AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1243330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243330 MtrunA17_Chr8g0357481 88.040 301 3 1 1 268 1 301 0.0 504
Msa1243330 MtrunA17_Chr7g0272961 29.658 263 137 10 9 231 34 288 2.91e-22 93.6
Msa1243330 MtrunA17_Chr4g0074511 30.469 256 142 8 14 235 40 293 9.44e-22 92.0
Msa1243330 MtrunA17_Chr1g0191751 29.183 257 146 7 9 231 95 349 3.50e-21 91.3
Msa1243330 MtrunA17_Chr4g0032141 28.455 246 148 4 14 232 56 300 4.08e-21 90.5
Msa1243330 MtrunA17_Chr7g0239461 28.571 224 130 6 14 232 16 214 4.14e-21 88.6
Msa1243330 MtrunA17_Chr4g0044131 32.400 250 133 8 14 231 8 253 1.95e-20 88.2
Msa1243330 MtrunA17_Chr7g0239451 27.711 249 148 5 14 231 16 263 1.97e-20 87.8
Msa1243330 MtrunA17_Chr4g0026001 29.658 263 138 9 14 240 14 265 1.21e-19 85.9
Msa1243330 MtrunA17_Chr3g0112271 27.600 250 145 7 14 232 17 261 8.50e-19 83.6
Msa1243330 MtrunA17_Chr3g0084871 30.370 270 141 9 3 232 7 269 9.40e-19 83.6
Msa1243330 MtrunA17_Chr4g0075531 28.800 250 145 4 11 232 4 248 1.06e-18 82.8
Msa1243330 MtrunA17_Chr3g0112151 25.403 248 153 4 14 232 86 330 1.08e-18 84.3
Msa1243330 MtrunA17_Chr0c30g0494101 31.641 256 137 11 14 235 40 291 3.16e-18 82.4
Msa1243330 MtrunA17_Chr3g0112261 27.381 252 143 7 14 232 19 263 8.65e-18 80.9
Msa1243330 MtrunA17_Chr4g0025971 28.947 266 142 9 14 243 14 268 1.72e-17 80.1
Msa1243330 MtrunA17_Chr7g0266981 28.626 262 143 9 14 239 13 266 1.84e-17 80.1
Msa1243330 MtrunA17_Chr7g0239481 27.273 253 150 6 14 234 15 265 2.13e-17 79.7
Msa1243330 MtrunA17_Chr3g0112141 25.397 252 148 6 14 232 17 261 4.37e-17 79.0
Msa1243330 MtrunA17_Chr3g0112171 27.823 248 147 7 14 232 15 259 9.48e-17 77.8
Msa1243330 MtrunA17_Chr4g0044111 27.863 262 145 9 14 239 13 266 1.69e-16 77.4
Msa1243330 MtrunA17_Chr7g0239511 26.275 255 146 7 14 232 16 264 6.69e-16 75.5
Msa1243330 MtrunA17_Chr7g0239491 24.800 250 155 5 14 232 15 262 8.79e-16 75.1
Msa1243330 MtrunA17_Chr7g0267001 33.047 233 136 8 14 231 8 235 1.01e-15 74.7
Msa1243330 MtrunA17_Chr7g0266891 28.244 262 144 9 14 239 7 260 1.03e-15 75.1
Msa1243330 MtrunA17_Chr1g0182511 28.302 265 153 8 1 231 1 262 1.18e-15 74.7
Msa1243330 MtrunA17_Chr8g0386171 46.067 89 47 1 14 101 52 140 1.04e-14 73.2
Msa1243330 MtrunA17_Chr7g0239501 25.490 255 148 6 14 232 16 264 1.55e-14 71.6
Msa1243330 MtrunA17_Chr7g0270451 29.885 261 147 8 14 241 6 263 2.14e-14 71.2
Msa1243330 MtrunA17_Chr8g0386201 33.088 136 89 2 9 142 40 175 3.08e-14 71.6
Msa1243330 MtrunA17_Chr4g0032181 25.431 232 141 4 30 232 17 245 5.42e-14 70.1
Msa1243330 MtrunA17_Chr7g0259521 27.692 260 149 9 14 238 6 261 9.85e-14 69.3
Msa1243330 MtrunA17_Chr7g0270441 26.984 252 147 8 14 232 6 253 1.07e-13 69.3
Msa1243330 MtrunA17_Chr7g0267011 31.915 188 97 6 14 173 8 192 3.42e-13 66.6
Msa1243330 MtrunA17_Chr3g0122901 25.769 260 159 7 3 234 67 320 1.58e-12 66.6
Msa1243330 MtrunA17_Chr4g0040371 27.698 278 143 10 1 232 5 270 2.69e-11 62.8
Msa1243330 MtrunA17_Chr4g0028911 26.792 265 133 10 14 231 11 261 3.60e-11 62.0
Msa1243330 MtrunA17_Chr1g0160511 28.571 140 96 2 15 151 38 176 8.77e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243330 AT3G12800.1 70.034 297 55 1 6 268 2 298 2.26e-144 407
Msa1243330 AT2G07640.1 60.000 150 26 1 131 246 1 150 2.04e-54 173
Msa1243330 AT1G54870.1 30.268 261 146 7 5 231 72 330 7.86e-25 101
Msa1243330 AT3G05260.1 29.924 264 150 7 5 235 27 288 9.01e-25 100
Msa1243330 AT1G54870.2 30.268 261 146 7 5 231 74 332 1.02e-24 101
Msa1243330 AT1G36580.1 68.254 63 20 0 195 257 1 63 4.04e-24 96.7
Msa1243330 AT1G52340.1 32.075 265 140 9 14 239 18 281 7.68e-24 97.8
Msa1243330 AT4G05530.1 30.800 250 140 4 11 232 6 250 1.77e-21 90.9
Msa1243330 AT2G29260.1 28.226 248 146 5 14 232 68 312 7.68e-20 87.8
Msa1243330 AT1G63380.3 31.250 256 134 10 14 231 15 266 2.14e-19 85.9
Msa1243330 AT1G63380.4 29.804 255 139 9 14 231 19 270 2.61e-19 85.5
Msa1243330 AT1G63380.1 29.804 255 139 9 14 231 17 268 2.80e-19 85.5
Msa1243330 AT1G63380.2 29.804 255 139 9 14 231 22 273 3.16e-19 85.5
Msa1243330 AT3G55290.2 34.241 257 124 12 14 231 17 267 4.31e-19 84.7
Msa1243330 AT3G55290.1 34.241 257 124 12 14 231 18 268 4.33e-19 84.7
Msa1243330 AT3G55310.1 33.852 257 125 12 14 231 17 267 4.40e-19 84.7
Msa1243330 AT2G29310.1 28.462 260 150 10 14 242 7 261 9.75e-19 83.6
Msa1243330 AT2G29340.1 28.413 271 160 7 14 255 7 272 2.11e-18 83.6
Msa1243330 AT2G29320.1 27.799 259 154 7 14 242 13 268 8.46e-18 81.3
Msa1243330 AT2G29290.2 27.626 257 156 7 14 242 7 261 1.33e-17 80.5
Msa1243330 AT5G06060.1 25.781 256 162 5 14 242 9 263 1.87e-17 80.1
Msa1243330 AT5G50700.1 36.923 130 80 2 14 141 45 174 2.36e-17 80.9
Msa1243330 AT5G50600.1 36.923 130 80 2 14 141 45 174 2.36e-17 80.9
Msa1243330 AT3G46170.1 33.074 257 127 12 14 231 26 276 5.11e-17 79.3
Msa1243330 AT2G29150.1 25.714 245 153 5 14 231 16 258 2.88e-16 77.0
Msa1243330 AT2G29360.1 27.132 258 154 8 14 241 16 269 7.60e-16 75.9
Msa1243330 AT2G29370.1 24.390 246 158 3 14 232 16 260 9.67e-16 75.5
Msa1243330 AT2G29350.1 24.898 245 155 4 14 231 15 257 1.14e-15 75.1
Msa1243330 AT3G04000.1 27.536 276 154 9 1 234 1 272 2.48e-15 74.3
Msa1243330 AT5G18210.1 27.863 262 136 9 14 232 8 259 2.63e-15 73.9
Msa1243330 AT2G29300.1 27.381 252 144 9 14 232 7 252 3.36e-15 73.9
Msa1243330 AT3G29250.1 29.615 260 131 9 13 232 43 290 5.68e-15 73.6
Msa1243330 AT3G29250.2 29.278 263 134 9 14 236 6 256 5.86e-15 73.2
Msa1243330 AT2G29300.2 27.381 252 144 9 14 232 7 252 6.75e-15 73.2
Msa1243330 AT3G29250.3 29.730 259 130 9 14 232 42 288 1.32e-14 72.8
Msa1243330 AT1G07450.1 25.781 256 159 5 14 241 8 260 2.81e-14 71.2
Msa1243330 AT2G47120.1 27.273 264 138 8 14 237 6 255 5.11e-14 70.5
Msa1243330 AT2G47120.2 27.273 264 138 8 14 237 7 256 5.70e-14 70.5
Msa1243330 AT3G47350.1 32.824 131 86 2 14 142 44 174 1.44e-13 69.7
Msa1243330 AT3G47360.1 31.333 150 98 3 17 161 48 197 1.56e-13 69.7
Msa1243330 AT3G47350.2 32.824 131 86 2 14 142 44 174 2.85e-13 68.9
Msa1243330 AT4G13180.1 27.273 253 146 9 14 232 13 261 1.33e-12 66.6
Msa1243330 AT4G10020.1 29.333 150 102 3 7 152 40 189 6.56e-12 65.5
Msa1243330 AT2G29290.1 25.847 236 145 7 35 242 11 244 8.97e-12 63.9
Msa1243330 AT3G47350.3 37.374 99 61 1 16 113 46 144 9.80e-12 63.9
Msa1243330 AT5G18210.2 27.969 261 133 10 14 229 8 258 1.37e-11 63.9
Msa1243330 AT2G29310.2 25.820 244 145 10 30 242 21 259 3.21e-11 62.4
Msa1243330 AT5G50590.1 33.077 130 85 2 14 141 45 174 8.39e-11 61.6
Msa1243330 AT5G50690.1 33.077 130 85 2 14 141 45 174 8.39e-11 61.6

Find 103 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACACCAATTGGTTCATTTC+TGG 0.141423 8_2:-28993060 None:intergenic
TGTGAAGGAAAATACATTAA+TGG 0.230658 8_2:+28992939 Msa1243330:intron
CGCTTTCGATTCCTGCTGTT+GGG 0.266199 8_2:+28989207 Msa1243330:CDS
TTCAAACCAGATATCTTAAA+AGG 0.308568 8_2:+28989047 Msa1243330:CDS
ACTGGCGGAGCGTCGGGAAT+TGG 0.320337 8_2:+28989086 Msa1243330:CDS
GGCAAAGTAGCTTTAATAAC+TGG 0.335212 8_2:+28989068 Msa1243330:CDS
TGTATAAACTTGGGGAGAAA+TGG 0.343265 8_2:+28991336 Msa1243330:CDS
CCTCTGCTACCTATTTCTTC+AGG 0.344151 8_2:-28991296 None:intergenic
AGTCACTTTCATTTCATGAT+TGG 0.349206 8_2:+28993408 Msa1243330:three_prime_UTR
CATCCAACAGAAGAATAAAA+AGG 0.351586 8_2:+28993266 Msa1243330:three_prime_UTR
ATTCCTGCTGTTGGGTTTGA+AGG 0.357334 8_2:+28989215 Msa1243330:CDS
AAGAAACTTGGCCCTGGAAT+GGG 0.360032 8_2:+28991196 Msa1243330:CDS
GTTTGAAATATCAACGCAAT+TGG 0.363203 8_2:+28989109 Msa1243330:CDS
CATAAATTATGTTTCTAAGT+TGG 0.368785 8_2:-28993223 None:intergenic
AGTTCTTCAATCTGCGGTTT+CGG 0.369174 8_2:+28989175 Msa1243330:CDS
CATAATCTGTTCCCCATTCC+AGG 0.380062 8_2:-28991208 None:intergenic
TTTGAAATATCAACGCAATT+GGG 0.380854 8_2:+28989110 Msa1243330:CDS
TCGCTTTCGATTCCTGCTGT+TGG 0.383020 8_2:+28989206 Msa1243330:CDS
TTTGTACTGTCTTTGCCTGT+TGG 0.387153 8_2:+28993311 Msa1243330:three_prime_UTR
TTAATCCCCTGCAGTGTAAA+GGG 0.389980 8_2:-28993122 None:intergenic
CTGAGGATCTTTCGCCGAAT+GGG 0.391331 8_2:+28989348 Msa1243330:CDS
ACCTGTCTCACTGCCTCCTT+TGG 0.397100 8_2:-28993014 None:intergenic
GATTATGATATTCGAGTCAA+TGG 0.397358 8_2:+28991224 Msa1243330:CDS
CACTCCTGGCATGAGTAAAC+TGG 0.411577 8_2:+28991271 Msa1243330:CDS
ATCTGGTTTGAAGGGTGATT+CGG 0.416889 8_2:-28989036 None:intergenic
AAACTGGCTCCTGAAGAAAT+AGG 0.417404 8_2:+28991287 Msa1243330:CDS
GGGATTGCACCGGGTCCAAT+AGG 0.421199 8_2:+28991245 Msa1243330:CDS
GGCGACACTATGATAGTTGA+TGG 0.432277 8_2:+28992960 Msa1243330:CDS
GTATAAACTTGGGGAGAAAT+GGG 0.441031 8_2:+28991337 Msa1243330:CDS
TTTAATAACTGGCGGAGCGT+CGG 0.442410 8_2:+28989079 Msa1243330:CDS
ATGCCAGGAGTGTCACCTAT+TGG 0.442884 8_2:-28991260 None:intergenic
CACTTAAGTATCTGAAGAAA+GGG 0.449824 8_2:+28990835 Msa1243330:CDS
TGAAGGGGATGTGAGGAAGC+AGG 0.455697 8_2:+28989232 Msa1243330:CDS
GCTGAGGATCTTTCGCCGAA+TGG 0.457228 8_2:+28989347 Msa1243330:CDS
ATTCTTGTTAATGCTGCTGC+TGG 0.464854 8_2:+28989308 Msa1243330:CDS
AATTTGCTTACAATTCCAAC+AGG 0.468165 8_2:-28993326 None:intergenic
CTCTTCTTAGCATCAGATGC+AGG 0.469651 8_2:+28991377 Msa1243330:CDS
TTCCTGCTGTTGGGTTTGAA+GGG 0.470572 8_2:+28989216 Msa1243330:CDS
GAAATGCCTCTGTATAAACT+TGG 0.470825 8_2:+28991326 Msa1243330:CDS
TGGAGCGTCGGTTGCTGTGA+TGG 0.472642 8_2:+28989139 Msa1243330:CDS
GCCAAAGGAGGCAGTGAGAC+AGG 0.476361 8_2:+28993013 Msa1243330:CDS
AGATCCAGAAATGAACCAAT+TGG 0.476611 8_2:+28993056 Msa1243330:CDS
GCACTTAAGTATCTGAAGAA+AGG 0.480331 8_2:+28990834 Msa1243330:CDS
CAAGAAACTTGGCCCTGGAA+TGG 0.484527 8_2:+28991195 Msa1243330:CDS
CAGGGCCAAGTTTCTTGTAG+TGG 0.486821 8_2:-28991189 None:intergenic
TATTAGCCCCTTTACACTGC+AGG 0.488086 8_2:+28993115 Msa1243330:three_prime_UTR
TCTTTAAACAATACAATGGA+TGG 0.492130 8_2:+28993146 Msa1243330:three_prime_UTR
ATTAATCCCCTGCAGTGTAA+AGG 0.496233 8_2:-28993123 None:intergenic
AAATGCCTCTGTATAAACTT+GGG 0.505018 8_2:+28991327 Msa1243330:CDS
TCATGAAATGAAAGTGACTA+AGG 0.508457 8_2:-28993404 None:intergenic
TGATTCCACTACAAGAAACT+TGG 0.513482 8_2:+28991184 Msa1243330:CDS
TTTAAGATATCTGGTTTGAA+GGG 0.515723 8_2:-28989044 None:intergenic
ATGGAGGACTCTGGCTGAGC+CGG 0.519343 8_2:+28992979 Msa1243330:CDS
ATTATGATATTCGAGTCAAT+GGG 0.519870 8_2:+28991225 Msa1243330:CDS
GGAGCCAGTTTACTCATGCC+AGG 0.525918 8_2:-28991275 None:intergenic
TCACCTGTTCGAAACCCATT+CGG 0.526674 8_2:-28989362 None:intergenic
GCGAATTTAGCGTCGAAACA+TGG 0.537122 8_2:+28989004 Msa1243330:exon
CACTACAAGAAACTTGGCCC+TGG 0.538124 8_2:+28991190 Msa1243330:CDS
CGAGTCAATGGGATTGCACC+GGG 0.541053 8_2:+28991236 Msa1243330:CDS
TCGAGTCAATGGGATTGCAC+CGG 0.551196 8_2:+28991235 Msa1243330:CDS
AAGACAGTACAAACAACCAT+GGG 0.551619 8_2:-28993301 None:intergenic
TTGGGTTTGAAGGGGATGTG+AGG 0.552630 8_2:+28989225 Msa1243330:CDS
CGGTTGCTGTGATGGGTCGT+CGG 0.552646 8_2:+28989147 Msa1243330:CDS
GGAGCGTCGGTTGCTGTGAT+GGG 0.554476 8_2:+28989140 Msa1243330:CDS
TAATTCTTTAAACAATACAA+TGG 0.554609 8_2:+28993142 Msa1243330:three_prime_UTR
TTCTTGTTAATGCTGCTGCT+GGG 0.557653 8_2:+28989309 Msa1243330:CDS
TCCCCTTCAAACCCAACAGC+AGG 0.558276 8_2:-28989218 None:intergenic
TATCTGAAGAAAGGGGCACC+AGG 0.566045 8_2:+28990843 Msa1243330:CDS
TCAACGCAATTGGGGAAACA+TGG 0.567028 8_2:+28989119 Msa1243330:CDS
GCCACGTTATTTGCCAAAGG+AGG 0.568351 8_2:+28993001 Msa1243330:CDS
ATTAGCCCCTTTACACTGCA+GGG 0.573910 8_2:+28993116 Msa1243330:three_prime_UTR
TTGAAATATCAACGCAATTG+GGG 0.574459 8_2:+28989111 Msa1243330:CDS
AGAAACTTGGCCCTGGAATG+GGG 0.582570 8_2:+28991197 Msa1243330:CDS
TCCTGCTGTTGGGTTTGAAG+GGG 0.588047 8_2:+28989217 Msa1243330:CDS
CCTGAAGAAATAGGTAGCAG+AGG 0.588385 8_2:+28991296 Msa1243330:CDS
TGATAGTTGATGGAGGACTC+TGG 0.594047 8_2:+28992970 Msa1243330:CDS
CCTTTGGCAAATAACGTGGC+CGG 0.597655 8_2:-28992998 None:intergenic
CCGGCCACGTTATTTGCCAA+AGG 0.598200 8_2:+28992998 Msa1243330:CDS
GGTCCAATAGGTGACACTCC+TGG 0.603194 8_2:+28991257 Msa1243330:CDS
AAGGCTATGGCTAGACCCCA+TGG 0.605801 8_2:+28993285 Msa1243330:three_prime_UTR
AATGCCTCTGTATAAACTTG+GGG 0.607132 8_2:+28991328 Msa1243330:CDS
GAAGCAAGTTCTTCAATCTG+CGG 0.609928 8_2:+28989169 Msa1243330:CDS
ATAATCTGTTCCCCATTCCA+GGG 0.611081 8_2:-28991207 None:intergenic
TGTGAGGAAGCAGGAAGATG+CGG 0.618720 8_2:+28989241 Msa1243330:CDS
TTCTCCCCAAGTTTATACAG+AGG 0.622115 8_2:-28991332 None:intergenic
GGAGTGTCACCTATTGGACC+CGG 0.626244 8_2:-28991254 None:intergenic
CTTTGAACATGAAATGTGGC+GGG 0.626951 8_2:+28993358 Msa1243330:three_prime_UTR
AAAGACAGTACAAACAACCA+TGG 0.633417 8_2:-28993302 None:intergenic
GTTTCAGACACCAATGTGTG+TGG 0.633582 8_2:-28988904 None:intergenic
GCCTCCTTTGGCAAATAACG+TGG 0.635341 8_2:-28993002 None:intergenic
GAATTGAATCAACGCAGTAG+CGG 0.640289 8_2:+28988982 Msa1243330:five_prime_UTR
ATTGGGGAAACATGGAGCGT+CGG 0.642414 8_2:+28989127 Msa1243330:CDS
GGAGAAATGGGATATTGCAA+TGG 0.644314 8_2:+28991349 Msa1243330:CDS
TAATCCCCTGCAGTGTAAAG+GGG 0.647893 8_2:-28993121 None:intergenic
TTAGCCCCTTTACACTGCAG+GGG 0.661864 8_2:+28993117 Msa1243330:three_prime_UTR
AAAGTAGCTTTAATAACTGG+CGG 0.668949 8_2:+28989071 Msa1243330:CDS
GTAAAAGACTCCACACACAT+TGG 0.673912 8_2:+28988894 Msa1243330:five_prime_UTR
ACTTAAGTATCTGAAGAAAG+GGG 0.691268 8_2:+28990836 Msa1243330:CDS
GACACTATGATAGTTGATGG+AGG 0.701596 8_2:+28992963 Msa1243330:CDS
ACTTTGAACATGAAATGTGG+CGG 0.712289 8_2:+28993357 Msa1243330:three_prime_UTR
GTAACTTTGAACATGAAATG+TGG 0.718210 8_2:+28993354 Msa1243330:three_prime_UTR
TGAACATGAAATGTGGCGGG+TGG 0.728393 8_2:+28993361 Msa1243330:three_prime_UTR
AGACAGTACAAACAACCATG+GGG 0.772054 8_2:-28993300 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCATCTTTTTAATTTA+AGG + chr8_2:28990986-28991005 Msa1243330:intron 10.0%
!!! TTTTTAATTTAAGGATTTAA+AGG + chr8_2:28990995-28991014 Msa1243330:intron 10.0%
!!! TAAAATTTTAATTATTCAAC+AGG + chr8_2:28991154-28991173 Msa1243330:intron 10.0%
!! AGATATAATTATGTAATTAT+AGG + chr8_2:28991663-28991682 Msa1243330:intron 10.0%
!! GATATAATTATGTAATTATA+GGG + chr8_2:28991664-28991683 Msa1243330:intron 10.0%
!! TAAAAATAATAATGCATAAA+AGG - chr8_2:28991699-28991718 None:intergenic 10.0%
!!! TTTATGCATTATTATTTTTA+TGG + chr8_2:28991699-28991718 Msa1243330:intron 10.0%
!!! ATTTTTTATTTATTTGTCTA+AGG + chr8_2:28992894-28992913 Msa1243330:intron 10.0%
!!! TACTTTTTAGATTCAATTAA+CGG + chr8_2:28989446-28989465 Msa1243330:intron 15.0%
!!! TAAGTATTTCTTTCATTTTA+AGG - chr8_2:28989642-28989661 None:intergenic 15.0%
!!! ATATGTAGATTTTAAAATCA+AGG - chr8_2:28990280-28990299 None:intergenic 15.0%
!!! AATGATTTTGCAATAATTTA+GGG - chr8_2:28990495-28990514 None:intergenic 15.0%
!!! AAATGATTTTGCAATAATTT+AGG - chr8_2:28990496-28990515 None:intergenic 15.0%
!!! AATTGATATTTTTGGTATAA+GGG - chr8_2:28991734-28991753 None:intergenic 15.0%
!! TAATTCTTTAAACAATACAA+TGG + chr8_2:28993142-28993161 Msa1243330:three_prime_UTR 15.0%
!!! ATTTGACTTTTAAGCATTTT+GGG + chr8_2:28989276-28989295 Msa1243330:CDS 20.0%
!! GAATCTAAAAAGTAAAATTG+AGG - chr8_2:28989440-28989459 None:intergenic 20.0%
!!! TGTCTATTTAGTAGTTATTT+TGG + chr8_2:28989583-28989602 Msa1243330:intron 20.0%
!! GCTAAACAACTTAAAAAAAA+AGG - chr8_2:28989862-28989881 None:intergenic 20.0%
!! ATTTGAATTGCATAAAATCA+TGG + chr8_2:28990307-28990326 Msa1243330:intron 20.0%
!!! TTCATTATTGTTTGAAGTTT+TGG + chr8_2:28990773-28990792 Msa1243330:intron 20.0%
!! AAAGATGAAAATTAACATCT+AGG - chr8_2:28990978-28990997 None:intergenic 20.0%
!! GCAAAATAATATATCTTCAT+TGG - chr8_2:28991059-28991078 None:intergenic 20.0%
!! AAGCTTAAAGTAAGTTTAAT+GGG - chr8_2:28991135-28991154 None:intergenic 20.0%
!! TAAGCTTAAAGTAAGTTTAA+TGG - chr8_2:28991136-28991155 None:intergenic 20.0%
!!! CAATTGATATTTTTGGTATA+AGG - chr8_2:28991735-28991754 None:intergenic 20.0%
!! TATACCAAAAATATCAATTG+TGG + chr8_2:28991735-28991754 Msa1243330:intron 20.0%
!! TATTACAAAAATACGCAAAA+TGG - chr8_2:28991785-28991804 None:intergenic 20.0%
!!! AGATACATAAAAGTATTGAA+AGG - chr8_2:28992726-28992745 None:intergenic 20.0%
!!! ACAATCTGATAATTTTATGA+TGG - chr8_2:28992752-28992771 None:intergenic 20.0%
!! AGTATTCAGTAAGTAAAAAT+GGG - chr8_2:28992815-28992834 None:intergenic 20.0%
!! TAGTATTCAGTAAGTAAAAA+TGG - chr8_2:28992816-28992835 None:intergenic 20.0%
!! ACAATTGTTTAAATTTGTGA+AGG + chr8_2:28992924-28992943 Msa1243330:intron 20.0%
!!! CATAAATTATGTTTCTAAGT+TGG - chr8_2:28993226-28993245 None:intergenic 20.0%
!! TTTAAGATATCTGGTTTGAA+GGG - chr8_2:28989047-28989066 None:intergenic 25.0%
!!! TTTTAAGATATCTGGTTTGA+AGG - chr8_2:28989048-28989067 None:intergenic 25.0%
! TTCAAACCAGATATCTTAAA+AGG + chr8_2:28989047-28989066 Msa1243330:CDS 25.0%
!! TTTGAAATATCAACGCAATT+GGG + chr8_2:28989110-28989129 Msa1243330:CDS 25.0%
!!! GATTTGACTTTTAAGCATTT+TGG + chr8_2:28989275-28989294 Msa1243330:CDS 25.0%
! CTAAAAAGTAAAATTGAGGA+CGG - chr8_2:28989436-28989455 None:intergenic 25.0%
!! ATTCAATTAACGGATGTATT+TGG + chr8_2:28989456-28989475 Msa1243330:intron 25.0%
! CATCAAATAGCTAATGTATA+TGG - chr8_2:28989495-28989514 None:intergenic 25.0%
! AATACATTTCTTAGAAATCG+AGG - chr8_2:28989783-28989802 None:intergenic 25.0%
!!! AGTTGTTTAGCCTTTTTAAA+CGG + chr8_2:28989871-28989890 Msa1243330:intron 25.0%
! ACTTACTTAACCGTTTAAAA+AGG - chr8_2:28989884-28989903 None:intergenic 25.0%
!!! AGCTTTGGTTAATAGATTTT+CGG + chr8_2:28989928-28989947 Msa1243330:intron 25.0%
!! TTATAAGTTTTTATCCAAGC+AGG + chr8_2:28990184-28990203 Msa1243330:intron 25.0%
!! TATAAGTTTTTATCCAAGCA+GGG + chr8_2:28990185-28990204 Msa1243330:intron 25.0%
! GTTAATCATGTTTAAATCTG+TGG - chr8_2:28990258-28990277 None:intergenic 25.0%
! GGTTAATTAAGTTCAATTGA+TGG + chr8_2:28990328-28990347 Msa1243330:intron 25.0%
!! AAATTCTACAACCTTTTGAA+TGG - chr8_2:28990436-28990455 None:intergenic 25.0%
!! ATGCTATTTGAACATCAATT+TGG - chr8_2:28990465-28990484 None:intergenic 25.0%
! TGTAAATTAGATAAGAGTCT+TGG - chr8_2:28990688-28990707 None:intergenic 25.0%
!! CATTTCTCGTATTCAATTTT+AGG - chr8_2:28990738-28990757 None:intergenic 25.0%
!! AGTATAAATCAGTTTTACAC+TGG + chr8_2:28991030-28991049 Msa1243330:intron 25.0%
! ATTATGATATTCGAGTCAAT+GGG + chr8_2:28991225-28991244 Msa1243330:CDS 25.0%
!!! CTGTAAATGTTGTATTTTTG+TGG + chr8_2:28991451-28991470 Msa1243330:intron 25.0%
! AAGTTATGAAAATGTTTCCA+AGG - chr8_2:28991491-28991510 None:intergenic 25.0%
! CATGATTAATTAGTAGTGTT+TGG + chr8_2:28991546-28991565 Msa1243330:intron 25.0%
! TTAATTAGTAGTGTTTGGTT+TGG + chr8_2:28991551-28991570 Msa1243330:intron 25.0%
! TACCATTAATAATCATCTGT+GGG + chr8_2:28991952-28991971 Msa1243330:intron 25.0%
!! TAGACTTCACATATTTTACA+TGG - chr8_2:28991811-28991830 None:intergenic 25.0%
! TGTGAAGGAAAATACATTAA+TGG + chr8_2:28992939-28992958 Msa1243330:intron 25.0%
! TCTTTAAACAATACAATGGA+TGG + chr8_2:28993146-28993165 Msa1243330:three_prime_UTR 25.0%
!!! ACTTTGCCTTTTAAGATATC+TGG - chr8_2:28989056-28989075 None:intergenic 30.0%
!! AAAGTAGCTTTAATAACTGG+CGG + chr8_2:28989071-28989090 Msa1243330:CDS 30.0%
! GTTTGAAATATCAACGCAAT+TGG + chr8_2:28989109-28989128 Msa1243330:CDS 30.0%
TTGAAATATCAACGCAATTG+GGG + chr8_2:28989111-28989130 Msa1243330:CDS 30.0%
!!! AGGATTTTTGTTGTTTTCGA+TGG + chr8_2:28989384-28989403 Msa1243330:intron 30.0%
ATTTCTTAGAAATCGAGGTT+GGG - chr8_2:28989778-28989797 None:intergenic 30.0%
TTTGCAATTTCGATGCATTT+AGG + chr8_2:28989801-28989820 Msa1243330:intron 30.0%
TTGCAATTTCGATGCATTTA+GGG + chr8_2:28989802-28989821 Msa1243330:intron 30.0%
!! CTACTATCATAAGTTTTGTG+AGG + chr8_2:28989980-28989999 Msa1243330:intron 30.0%
!! ATAAGTTTTGTGAGGTTGTT+TGG + chr8_2:28989988-28990007 Msa1243330:intron 30.0%
!! TAAGTTTTGTGAGGTTGTTT+GGG + chr8_2:28989989-28990008 Msa1243330:intron 30.0%
!! GTTGTTTTCGTAAGCTATAT+AGG - chr8_2:28990079-28990098 None:intergenic 30.0%
AGCTTACGAAAACAACTTAT+AGG + chr8_2:28990083-28990102 Msa1243330:intron 30.0%
! AACCTTTTGAATGGTTAACA+CGG - chr8_2:28990427-28990446 None:intergenic 30.0%
ATCAGAATCCTTCTATAATG+TGG + chr8_2:28990629-28990648 Msa1243330:intron 30.0%
CACTTAAGTATCTGAAGAAA+GGG + chr8_2:28990835-28990854 Msa1243330:CDS 30.0%
ACTTAAGTATCTGAAGAAAG+GGG + chr8_2:28990836-28990855 Msa1243330:CDS 30.0%
GATTATGATATTCGAGTCAA+TGG + chr8_2:28991224-28991243 Msa1243330:CDS 30.0%
AAATGCCTCTGTATAAACTT+GGG + chr8_2:28991327-28991346 Msa1243330:CDS 30.0%
GTAGTGAAATTAGACAGTAT+AGG + chr8_2:28991634-28991653 Msa1243330:intron 30.0%
!!! GATATTTTTGGTATAAGGGT+AGG - chr8_2:28991730-28991749 None:intergenic 30.0%
! CACACCACAATTGATATTTT+TGG - chr8_2:28991742-28991761 None:intergenic 30.0%
GTACCATTAATAATCATCTG+TGG + chr8_2:28991951-28991970 Msa1243330:intron 30.0%
TTCCCACAGATGATTATTAA+TGG - chr8_2:28991957-28991976 None:intergenic 30.0%
CACTAATATGATCCATATGT+GGG + chr8_2:28992028-28992047 Msa1243330:intron 30.0%
!!! TTGGAAGTATTTTGTTCCTA+GGG - chr8_2:28992459-28992478 None:intergenic 30.0%
!!! ATTGGAAGTATTTTGTTCCT+AGG - chr8_2:28992460-28992479 None:intergenic 30.0%
AGGAACAAAATACTTCCAAT+AGG + chr8_2:28992460-28992479 Msa1243330:intron 30.0%
AACAAAATACTTCCAATAGG+CGG + chr8_2:28992463-28992482 Msa1243330:intron 30.0%
!!! TTACTTTTTGGAACACCAAT+TGG - chr8_2:28993074-28993093 None:intergenic 30.0%
!! CTGAATCATAGCTTACTTTT+TGG - chr8_2:28993086-28993105 None:intergenic 30.0%
CATCCAACAGAAGAATAAAA+AGG + chr8_2:28993266-28993285 Msa1243330:three_prime_UTR 30.0%
! TAGCCTTTTTATTCTTCTGT+TGG - chr8_2:28993272-28993291 None:intergenic 30.0%
ACAGAAGAATAAAAAGGCTA+TGG + chr8_2:28993272-28993291 Msa1243330:three_prime_UTR 30.0%
! AATTTGCTTACAATTCCAAC+AGG - chr8_2:28993329-28993348 None:intergenic 30.0%
GTAACTTTGAACATGAAATG+TGG + chr8_2:28993354-28993373 Msa1243330:three_prime_UTR 30.0%
TCATGAAATGAAAGTGACTA+AGG - chr8_2:28993407-28993426 None:intergenic 30.0%
! AGTCACTTTCATTTCATGAT+TGG + chr8_2:28993408-28993427 Msa1243330:three_prime_UTR 30.0%
! AACCTGATTTTACCTTCAAA+AGG + chr8_2:28993466-28993485 Msa1243330:three_prime_UTR 30.0%
!! GGCAAAGTAGCTTTAATAAC+TGG + chr8_2:28989068-28989087 Msa1243330:CDS 35.0%
! TGACTTTTAAGCATTTTGGG+AGG + chr8_2:28989279-28989298 Msa1243330:CDS 35.0%
AAAAGTAAAATTGAGGACGG+AGG - chr8_2:28989433-28989452 None:intergenic 35.0%
ACTAACGAAAAACAGCTTTG+AGG - chr8_2:28989610-28989629 None:intergenic 35.0%
GTTGTTAAAGAGTCTCACAT+CGG + chr8_2:28989667-28989686 Msa1243330:intron 35.0%
CATTTCTTAGAAATCGAGGT+TGG - chr8_2:28989779-28989798 None:intergenic 35.0%
TGCAATTTCGATGCATTTAG+GGG + chr8_2:28989803-28989822 Msa1243330:intron 35.0%
GGATACTAAAGACACTATGT+GGG - chr8_2:28989841-28989860 None:intergenic 35.0%
AGGATACTAAAGACACTATG+TGG - chr8_2:28989842-28989861 None:intergenic 35.0%
! TTGGTTAATAGATTTTCGGC+TGG + chr8_2:28989932-28989951 Msa1243330:intron 35.0%
!! TAATAGATTTTCGGCTGGTT+TGG + chr8_2:28989937-28989956 Msa1243330:intron 35.0%
CAATAGCATAGTTCAATGAG+TGG - chr8_2:28990388-28990407 None:intergenic 35.0%
! ACTACTCATCTGAAACACAA+TGG - chr8_2:28990661-28990680 None:intergenic 35.0%
!!! GTTTTGGATATCGATTCTGT+TGG + chr8_2:28990789-28990808 Msa1243330:intron 35.0%
GCACTTAAGTATCTGAAGAA+AGG + chr8_2:28990834-28990853 Msa1243330:CDS 35.0%
ATTAGTGCTACCTTGCATTA+TGG + chr8_2:28990900-28990919 Msa1243330:intron 35.0%
AATTCATGTATCTGCAGCAA+AGG + chr8_2:28990938-28990957 Msa1243330:intron 35.0%
TGATTCCACTACAAGAAACT+TGG + chr8_2:28991184-28991203 Msa1243330:CDS 35.0%
GAAATGCCTCTGTATAAACT+TGG + chr8_2:28991326-28991345 Msa1243330:CDS 35.0%
AATGCCTCTGTATAAACTTG+GGG + chr8_2:28991328-28991347 Msa1243330:CDS 35.0%
TGTATAAACTTGGGGAGAAA+TGG + chr8_2:28991336-28991355 Msa1243330:CDS 35.0%
GTATAAACTTGGGGAGAAAT+GGG + chr8_2:28991337-28991356 Msa1243330:CDS 35.0%
AGTATCGCATATACCAAGTA+GGG - chr8_2:28991433-28991452 None:intergenic 35.0%
!! CTACTTCTCATTGACTTTGA+AGG - chr8_2:28991514-28991533 None:intergenic 35.0%
! GTGTTTAGGATTCCATGTTT+GGG + chr8_2:28991582-28991601 Msa1243330:intron 35.0%
!! TTTTTGGTATAAGGGTAGGA+AGG - chr8_2:28991726-28991745 None:intergenic 35.0%
ATATGTCATGTATGCTTCAG+AGG - chr8_2:28991868-28991887 None:intergenic 35.0%
ACCATCAAAGTGATCATCAA+CGG + chr8_2:28991919-28991938 Msa1243330:intron 35.0%
CCACATATGGATCATATTAG+TGG - chr8_2:28992030-28992049 None:intergenic 35.0%
CCACTAATATGATCCATATG+TGG + chr8_2:28992027-28992046 Msa1243330:intron 35.0%
CACTAGTATGAACCATATCT+GGG + chr8_2:28992094-28992113 Msa1243330:intron 35.0%
!! GCTGCTGTATATTTTTCAGT+TGG - chr8_2:28992437-28992456 None:intergenic 35.0%
! ATTTTACATGGTATCAGAGC+TGG - chr8_2:28992555-28992574 None:intergenic 35.0%
CACTAGTATGAACCATATGT+GGG + chr8_2:28992645-28992664 Msa1243330:intron 35.0%
CAAAGGTTTAAATACTGCTC+TGG - chr8_2:28992684-28992703 None:intergenic 35.0%
CAGAGCAGTATTTAAACCTT+TGG + chr8_2:28992682-28992701 Msa1243330:intron 35.0%
AAAGGTAGAACACTGAAAAG+AGG - chr8_2:28992708-28992727 None:intergenic 35.0%
AGGGTTTCAAAACAACTACA+TGG - chr8_2:28992840-28992859 None:intergenic 35.0%
!!! TGTAGTTGTTTTGAAACCCT+AGG + chr8_2:28992840-28992859 Msa1243330:intron 35.0%
AGATCCAGAAATGAACCAAT+TGG + chr8_2:28993056-28993075 Msa1243330:CDS 35.0%
! AACACCAATTGGTTCATTTC+TGG - chr8_2:28993063-28993082 None:intergenic 35.0%
AAGACAGTACAAACAACCAT+GGG - chr8_2:28993304-28993323 None:intergenic 35.0%
AAAGACAGTACAAACAACCA+TGG - chr8_2:28993305-28993324 None:intergenic 35.0%
ACTTTGAACATGAAATGTGG+CGG + chr8_2:28993357-28993376 Msa1243330:three_prime_UTR 35.0%
!! GTCCTTTTGAAGGTAAAATC+AGG - chr8_2:28993471-28993490 None:intergenic 35.0%
GTAAAAGACTCCACACACAT+TGG + chr8_2:28988894-28988913 Msa1243330:five_prime_UTR 40.0%
GAATTGAATCAACGCAGTAG+CGG + chr8_2:28988982-28989001 Msa1243330:five_prime_UTR 40.0%
! ATCTGGTTTGAAGGGTGATT+CGG - chr8_2:28989039-28989058 None:intergenic 40.0%
GAAGCAAGTTCTTCAATCTG+CGG + chr8_2:28989169-28989188 Msa1243330:CDS 40.0%
AGTTCTTCAATCTGCGGTTT+CGG + chr8_2:28989175-28989194 Msa1243330:CDS 40.0%
ATTCTTGTTAATGCTGCTGC+TGG + chr8_2:28989308-28989327 Msa1243330:CDS 40.0%
TTCTTGTTAATGCTGCTGCT+GGG + chr8_2:28989309-28989328 Msa1243330:CDS 40.0%
TAAGTGTCTATACGTGTACG+TGG + chr8_2:28989707-28989726 Msa1243330:intron 40.0%
AAGTGTCTATACGTGTACGT+GGG + chr8_2:28989708-28989727 Msa1243330:intron 40.0%
CTAATACAACCCCACAAAAC+CGG - chr8_2:28989754-28989773 None:intergenic 40.0%
TGACTCACGTGTAAATGAAG+TGG + chr8_2:28989904-28989923 Msa1243330:intron 40.0%
TGTAAATGAAGTGGCAGCTT+TGG + chr8_2:28989913-28989932 Msa1243330:intron 40.0%
TATCCAAGCAGGGTCATATT+AGG + chr8_2:28990195-28990214 Msa1243330:intron 40.0%
ATGCTATTGCTAACCACATG+CGG + chr8_2:28990399-28990418 Msa1243330:intron 40.0%
GACCGTGTTAACCATTCAAA+AGG + chr8_2:28990422-28990441 Msa1243330:intron 40.0%
TTGTCTGTGACAAGTCTCAA+AGG - chr8_2:28990584-28990603 None:intergenic 40.0%
GGTCATTGCCACATTATAGA+AGG - chr8_2:28990640-28990659 None:intergenic 40.0%
TTAACGAGAGTAGAGTGATG+TGG - chr8_2:28991081-28991100 None:intergenic 40.0%
ATAATCTGTTCCCCATTCCA+GGG - chr8_2:28991210-28991229 None:intergenic 40.0%
! AAACTGGCTCCTGAAGAAAT+AGG + chr8_2:28991287-28991306 Msa1243330:CDS 40.0%
TTCTCCCCAAGTTTATACAG+AGG - chr8_2:28991335-28991354 None:intergenic 40.0%
GGAGAAATGGGATATTGCAA+TGG + chr8_2:28991349-28991368 Msa1243330:CDS 40.0%
TTATCCAAGTGTTCCCTACT+TGG + chr8_2:28991417-28991436 Msa1243330:intron 40.0%
TATACCAAGTAGGGAACACT+TGG - chr8_2:28991424-28991443 None:intergenic 40.0%
CAGTATCGCATATACCAAGT+AGG - chr8_2:28991434-28991453 None:intergenic 40.0%
! GGTGTTTAGGATTCCATGTT+TGG + chr8_2:28991581-28991600 Msa1243330:intron 40.0%
!! TCCATGTTTGGGTTTTGCTT+TGG + chr8_2:28991593-28991612 Msa1243330:intron 40.0%
ACCAAAGCAAAACCCAAACA+TGG - chr8_2:28991597-28991616 None:intergenic 40.0%
CCATCAAAGTGATCATCAAC+GGG + chr8_2:28991920-28991939 Msa1243330:intron 40.0%
TGATCATCAACGGGAAAAGA+AGG + chr8_2:28991929-28991948 Msa1243330:intron 40.0%
ATATGTGGGAAAGTCACCAT+CGG + chr8_2:28992042-28992061 Msa1243330:intron 40.0%
CCAGATATGGTTCATACTAG+TGG - chr8_2:28992096-28992115 None:intergenic 40.0%
CCACTAGTATGAACCATATC+TGG + chr8_2:28992093-28992112 Msa1243330:intron 40.0%
GTATGAACCATATCTGGGAA+AGG + chr8_2:28992099-28992118 Msa1243330:intron 40.0%
GAAAAATATACAGCAGCCCT+AGG + chr8_2:28992440-28992459 Msa1243330:intron 40.0%
AGCAGTGAAGCACAAAGATA+AGG + chr8_2:28992515-28992534 Msa1243330:intron 40.0%
TAGTGGTTGTTCAACTTCCT+AGG - chr8_2:28992630-28992649 None:intergenic 40.0%
CCACATATGGTTCATACTAG+TGG - chr8_2:28992647-28992666 None:intergenic 40.0%
CCACTAGTATGAACCATATG+TGG + chr8_2:28992644-28992663 Msa1243330:intron 40.0%
GTATGAACCATATGTGGGAA+AGG + chr8_2:28992650-28992669 Msa1243330:intron 40.0%
AGGTTTAAATACTGCTCTGG+TGG - chr8_2:28992681-28992700 None:intergenic 40.0%
! GTCACTGTTTGAGATACCTA+GGG - chr8_2:28992859-28992878 None:intergenic 40.0%
! AGTCACTGTTTGAGATACCT+AGG - chr8_2:28992860-28992879 None:intergenic 40.0%
!! GACACTATGATAGTTGATGG+AGG + chr8_2:28992963-28992982 Msa1243330:CDS 40.0%
TTAATCCCCTGCAGTGTAAA+GGG - chr8_2:28993125-28993144 None:intergenic 40.0%
ATTAATCCCCTGCAGTGTAA+AGG - chr8_2:28993126-28993145 None:intergenic 40.0%
AGACAGTACAAACAACCATG+GGG - chr8_2:28993303-28993322 None:intergenic 40.0%
TTTGTACTGTCTTTGCCTGT+TGG + chr8_2:28993311-28993330 Msa1243330:three_prime_UTR 40.0%
CTTTGAACATGAAATGTGGC+GGG + chr8_2:28993358-28993377 Msa1243330:three_prime_UTR 40.0%
! GGTTTATGCTGTCCTTTTGA+AGG - chr8_2:28993481-28993500 None:intergenic 40.0%
GTTTCAGACACCAATGTGTG+TGG - chr8_2:28988907-28988926 None:intergenic 45.0%
! GCGAATTTAGCGTCGAAACA+TGG + chr8_2:28989004-28989023 Msa1243330:exon 45.0%
TTTAATAACTGGCGGAGCGT+CGG + chr8_2:28989079-28989098 Msa1243330:CDS 45.0%
TCAACGCAATTGGGGAAACA+TGG + chr8_2:28989119-28989138 Msa1243330:CDS 45.0%
ATTCCTGCTGTTGGGTTTGA+AGG + chr8_2:28989215-28989234 Msa1243330:CDS 45.0%
TTCCTGCTGTTGGGTTTGAA+GGG + chr8_2:28989216-28989235 Msa1243330:CDS 45.0%
! GAATTTTCTTGCTGCTGCTG+AGG + chr8_2:28989331-28989350 Msa1243330:CDS 45.0%
TCACCTGTTCGAAACCCATT+CGG - chr8_2:28989365-28989384 None:intergenic 45.0%
!!! GATTTTCGGCTGGTTTGGAT+TGG + chr8_2:28989942-28989961 Msa1243330:intron 45.0%
ACACCTAATATGACCCTGCT+TGG - chr8_2:28990201-28990220 None:intergenic 45.0%
TGCTATTGCTAACCACATGC+GGG + chr8_2:28990400-28990419 Msa1243330:intron 45.0%
CAGGTAGGAACTCTTCTAGT+GGG + chr8_2:28990862-28990881 Msa1243330:intron 45.0%
AGGTAGGAACTCTTCTAGTG+GGG + chr8_2:28990863-28990882 Msa1243330:intron 45.0%
CCAAGAAGCTCCATAATGCA+AGG - chr8_2:28990913-28990932 None:intergenic 45.0%
CCTTGCATTATGGAGCTTCT+TGG + chr8_2:28990910-28990929 Msa1243330:intron 45.0%
AAGAAACTTGGCCCTGGAAT+GGG + chr8_2:28991196-28991215 Msa1243330:CDS 45.0%
CATAATCTGTTCCCCATTCC+AGG - chr8_2:28991211-28991230 None:intergenic 45.0%
! CCTCTGCTACCTATTTCTTC+AGG - chr8_2:28991299-28991318 None:intergenic 45.0%
CCTGAAGAAATAGGTAGCAG+AGG + chr8_2:28991296-28991315 Msa1243330:CDS 45.0%
CTCTTCTTAGCATCAGATGC+AGG + chr8_2:28991377-28991396 Msa1243330:CDS 45.0%
TGGTGACTATCTGAAAGCCT+TGG + chr8_2:28991471-28991490 Msa1243330:intron 45.0%
!! AGTGTTTGGTTTGGACTTGC+TGG + chr8_2:28991560-28991579 Msa1243330:intron 45.0%
!! GTTTGGACTTGCTGGTGTTT+AGG + chr8_2:28991568-28991587 Msa1243330:intron 45.0%
!! TTGGTGACAGTCTAGCTTTC+TGG + chr8_2:28991612-28991631 Msa1243330:intron 45.0%
!! CCCGTTGATGATCACTTTGA+TGG - chr8_2:28991923-28991942 None:intergenic 45.0%
CGATTAATCCAGTGGTGACT+CGG - chr8_2:28991988-28992007 None:intergenic 45.0%
ACCACTGGATTAATCGTCGA+TGG + chr8_2:28991992-28992011 Msa1243330:intron 45.0%
CCACTGGATTAATCGTCGAT+GGG + chr8_2:28991993-28992012 Msa1243330:intron 45.0%
GATGGTGACTTTCCCACATA+TGG - chr8_2:28992043-28992062 None:intergenic 45.0%
!!! ATAACCAGCTGCCACTTTTC+TGG - chr8_2:28992354-28992373 None:intergenic 45.0%
! GAGATAGTAAGCACTAGCCT+AGG + chr8_2:28992610-28992629 Msa1243330:intron 45.0%
GAACACTGAAAAGAGGCCAA+AGG - chr8_2:28992701-28992720 None:intergenic 45.0%
GGCGACACTATGATAGTTGA+TGG + chr8_2:28992960-28992979 Msa1243330:CDS 45.0%
!! TGATAGTTGATGGAGGACTC+TGG + chr8_2:28992970-28992989 Msa1243330:CDS 45.0%
TATTAGCCCCTTTACACTGC+AGG + chr8_2:28993115-28993134 Msa1243330:three_prime_UTR 45.0%
ATTAGCCCCTTTACACTGCA+GGG + chr8_2:28993116-28993135 Msa1243330:three_prime_UTR 45.0%
TAATCCCCTGCAGTGTAAAG+GGG - chr8_2:28993124-28993143 None:intergenic 45.0%
!! ACAAATAAATAAAAAATTAA+AGG - chr8_2:28992891-28992910 None:intergenic 5.0%
! TTAATAACTGGCGGAGCGTC+GGG + chr8_2:28989080-28989099 Msa1243330:CDS 50.0%
ATTGGGGAAACATGGAGCGT+CGG + chr8_2:28989127-28989146 Msa1243330:CDS 50.0%
TCGCTTTCGATTCCTGCTGT+TGG + chr8_2:28989206-28989225 Msa1243330:CDS 50.0%
CGCTTTCGATTCCTGCTGTT+GGG + chr8_2:28989207-28989226 Msa1243330:CDS 50.0%
TCCTGCTGTTGGGTTTGAAG+GGG + chr8_2:28989217-28989236 Msa1243330:CDS 50.0%
TTGGGTTTGAAGGGGATGTG+AGG + chr8_2:28989225-28989244 Msa1243330:CDS 50.0%
TGTGAGGAAGCAGGAAGATG+CGG + chr8_2:28989241-28989260 Msa1243330:CDS 50.0%
CTGAGGATCTTTCGCCGAAT+GGG + chr8_2:28989348-28989367 Msa1243330:CDS 50.0%
! GAATGGGTTTCGAACAGGTG+AGG + chr8_2:28989364-28989383 Msa1243330:intron 50.0%
!!! ACCTCACATGCCGGTTTTGT+GGG + chr8_2:28989741-28989760 Msa1243330:intron 50.0%
!! TATCTGAAGAAAGGGGCACC+AGG + chr8_2:28990843-28990862 Msa1243330:CDS 50.0%
CCACTAGAAGAGTTCCTACC+TGG - chr8_2:28990864-28990883 None:intergenic 50.0%
CCAGGTAGGAACTCTTCTAG+TGG + chr8_2:28990861-28990880 Msa1243330:intron 50.0%
GGTAGGAACTCTTCTAGTGG+GGG + chr8_2:28990864-28990883 Msa1243330:intron 50.0%
CAGGGCCAAGTTTCTTGTAG+TGG - chr8_2:28991192-28991211 None:intergenic 50.0%
CACTACAAGAAACTTGGCCC+TGG + chr8_2:28991190-28991209 Msa1243330:CDS 50.0%
CAAGAAACTTGGCCCTGGAA+TGG + chr8_2:28991195-28991214 Msa1243330:CDS 50.0%
AGAAACTTGGCCCTGGAATG+GGG + chr8_2:28991197-28991216 Msa1243330:CDS 50.0%
TCGAGTCAATGGGATTGCAC+CGG + chr8_2:28991235-28991254 Msa1243330:CDS 50.0%
!! ATGCCAGGAGTGTCACCTAT+TGG - chr8_2:28991263-28991282 None:intergenic 50.0%
CACTCCTGGCATGAGTAAAC+TGG + chr8_2:28991271-28991290 Msa1243330:CDS 50.0%
TATAGTCACCGAGTCACCAC+TGG + chr8_2:28991977-28991996 Msa1243330:intron 50.0%
CCCATCGACGATTAATCCAG+TGG - chr8_2:28991996-28992015 None:intergenic 50.0%
ACCATCGGATTGATCGTCGA+TGG + chr8_2:28992057-28992076 Msa1243330:intron 50.0%
CCATCGGATTGATCGTCGAT+GGG + chr8_2:28992058-28992077 Msa1243330:intron 50.0%
GATCGTCGATGGGAAGGAAA+AGG + chr8_2:28992068-28992087 Msa1243330:intron 50.0%
GACGACTCCTTTCCCAGATA+TGG - chr8_2:28992109-28992128 None:intergenic 50.0%
AGTCGTCACCAGAACATGAC+AGG + chr8_2:28992122-28992141 Msa1243330:intron 50.0%
CAACTCCTCCTGTCATGTTC+TGG - chr8_2:28992133-28992152 None:intergenic 50.0%
ACAGGAGGAGTTGCGATTGT+TGG + chr8_2:28992140-28992159 Msa1243330:intron 50.0%
! CGATTGTTGGCGCTGAAAGA+TGG + chr8_2:28992153-28992172 Msa1243330:intron 50.0%
! TTGTTGGCGCTGAAAGATGG+TGG + chr8_2:28992156-28992175 Msa1243330:intron 50.0%
!! AATCCAGAGGTGGTTGGTGA+CGG + chr8_2:28992309-28992328 Msa1243330:intron 50.0%
! GTTGGGTTGCACCAGAAAAG+TGG + chr8_2:28992340-28992359 Msa1243330:intron 50.0%
GGTTATTGCACAGCGGGAAA+TGG + chr8_2:28992368-28992387 Msa1243330:intron 50.0%
ATGGTGTGAAGGAAGGTCAC+TGG + chr8_2:28992387-28992406 Msa1243330:intron 50.0%
TGTGAAGGAAGGTCACTGGA+AGG + chr8_2:28992391-28992410 Msa1243330:intron 50.0%
GTGAAGGAAGGTCACTGGAA+GGG + chr8_2:28992392-28992411 Msa1243330:intron 50.0%
TCTTTGTGCTTCACTGCTGC+CGG - chr8_2:28992513-28992532 None:intergenic 50.0%
GGTGTCTCCTTTCCCACATA+TGG - chr8_2:28992660-28992679 None:intergenic 50.0%
CCTTTGGCAAATAACGTGGC+CGG - chr8_2:28993001-28993020 None:intergenic 50.0%
GCCACGTTATTTGCCAAAGG+AGG + chr8_2:28993001-28993020 Msa1243330:CDS 50.0%
GCCTCCTTTGGCAAATAACG+TGG - chr8_2:28993005-28993024 None:intergenic 50.0%
TTAGCCCCTTTACACTGCAG+GGG + chr8_2:28993117-28993136 Msa1243330:three_prime_UTR 50.0%
! TGAACATGAAATGTGGCGGG+TGG + chr8_2:28993361-28993380 Msa1243330:three_prime_UTR 50.0%
TCCCCTTCAAACCCAACAGC+AGG - chr8_2:28989221-28989240 None:intergenic 55.0%
TGAAGGGGATGTGAGGAAGC+AGG + chr8_2:28989232-28989251 Msa1243330:CDS 55.0%
GCTGAGGATCTTTCGCCGAA+TGG + chr8_2:28989347-28989366 Msa1243330:CDS 55.0%
! TCGCCGAATGGGTTTCGAAC+AGG + chr8_2:28989359-28989378 Msa1243330:CDS 55.0%
GCAATCCTCACCTCACATGC+CGG + chr8_2:28989732-28989751 Msa1243330:intron 55.0%
CAAAACCGGCATGTGAGGTG+AGG - chr8_2:28989740-28989759 None:intergenic 55.0%
!!! CACCTCACATGCCGGTTTTG+TGG + chr8_2:28989740-28989759 Msa1243330:intron 55.0%
!!! CCTCACATGCCGGTTTTGTG+GGG + chr8_2:28989742-28989761 Msa1243330:intron 55.0%
!! TGAAGAAAGGGGCACCAGGT+AGG + chr8_2:28990847-28990866 Msa1243330:intron 55.0%
CGAGTCAATGGGATTGCACC+GGG + chr8_2:28991236-28991255 Msa1243330:CDS 55.0%
! GGAGTGTCACCTATTGGACC+CGG - chr8_2:28991257-28991276 None:intergenic 55.0%
GGTCCAATAGGTGACACTCC+TGG + chr8_2:28991257-28991276 Msa1243330:CDS 55.0%
GGAGCCAGTTTACTCATGCC+AGG - chr8_2:28991278-28991297 None:intergenic 55.0%
CCCATCGACGATCAATCCGA+TGG - chr8_2:28992061-28992080 None:intergenic 55.0%
CGGATTGATCGTCGATGGGA+AGG + chr8_2:28992062-28992081 Msa1243330:intron 55.0%
CGTCACCAGAACATGACAGG+AGG + chr8_2:28992125-28992144 Msa1243330:intron 55.0%
GCTCTCACACGCGAATCTAG+AGG + chr8_2:28992190-28992209 Msa1243330:intron 55.0%
CGAATCTAGAGGCAGCGTGT+GGG + chr8_2:28992201-28992220 Msa1243330:intron 55.0%
GAATCTAGAGGCAGCGTGTG+GGG + chr8_2:28992202-28992221 Msa1243330:intron 55.0%
TCCAAGCACGGAGAATGTGG+TGG + chr8_2:28992225-28992244 Msa1243330:intron 55.0%
ACCACCACATTCTCCGTGCT+TGG - chr8_2:28992229-28992248 None:intergenic 55.0%
! GAGAATGTGGTGGTGCGTGA+AGG + chr8_2:28992235-28992254 Msa1243330:intron 55.0%
TAAAGAACCACCGTGCTCGC+CGG + chr8_2:28992284-28992303 Msa1243330:intron 55.0%
CCAACCACCTCTGGATTCTC+CGG - chr8_2:28992306-28992325 None:intergenic 55.0%
TGCACCAGAAAAGTGGCAGC+TGG + chr8_2:28992347-28992366 Msa1243330:intron 55.0%
GGCAGCTGGTTATTGCACAG+CGG + chr8_2:28992361-28992380 Msa1243330:intron 55.0%
GCAGCTGGTTATTGCACAGC+GGG + chr8_2:28992362-28992381 Msa1243330:intron 55.0%
CACAGCGGGAAATGGTGTGA+AGG + chr8_2:28992376-28992395 Msa1243330:intron 55.0%
GCGGGAAATGGTGTGAAGGA+AGG + chr8_2:28992380-28992399 Msa1243330:intron 55.0%
CCGGCCACGTTATTTGCCAA+AGG + chr8_2:28992998-28993017 Msa1243330:CDS 55.0%
ACCTGTCTCACTGCCTCCTT+TGG - chr8_2:28993017-28993036 None:intergenic 55.0%
AAGGCTATGGCTAGACCCCA+TGG + chr8_2:28993285-28993304 Msa1243330:three_prime_UTR 55.0%
!! TGGAGCGTCGGTTGCTGTGA+TGG + chr8_2:28989139-28989158 Msa1243330:CDS 60.0%
!! GGAGCGTCGGTTGCTGTGAT+GGG + chr8_2:28989140-28989159 Msa1243330:CDS 60.0%
!! CGGTTGCTGTGATGGGTCGT+CGG + chr8_2:28989147-28989166 Msa1243330:CDS 60.0%
CCCCACAAAACCGGCATGTG+AGG - chr8_2:28989745-28989764 None:intergenic 60.0%
GGTTAACACGGTCCCGCATG+TGG - chr8_2:28990415-28990434 None:intergenic 60.0%
GGGATTGCACCGGGTCCAAT+AGG + chr8_2:28991245-28991264 Msa1243330:CDS 60.0%
GCGAATCTAGAGGCAGCGTG+TGG + chr8_2:28992200-28992219 Msa1243330:intron 60.0%
GGGTCCAAGCACGGAGAATG+TGG + chr8_2:28992222-28992241 Msa1243330:intron 60.0%
TCTGGATTCTCCGGCGAGCA+CGG - chr8_2:28992297-28992316 None:intergenic 60.0%
CCGGAGAATCCAGAGGTGGT+TGG + chr8_2:28992303-28992322 Msa1243330:intron 60.0%
!! AGGTGGTTGGTGACGGTGCT+CGG + chr8_2:28992316-28992335 Msa1243330:intron 60.0%
!! TTGGTGACGGTGCTCGGTGT+TGG + chr8_2:28992322-28992341 Msa1243330:intron 60.0%
!! TGGTGACGGTGCTCGGTGTT+GGG + chr8_2:28992323-28992342 Msa1243330:intron 60.0%
!! CTTCCAATAGGCGGTGCTGC+CGG + chr8_2:28992472-28992491 Msa1243330:intron 60.0%
TTGTGCTTCACTGCTGCCGG+TGG - chr8_2:28992510-28992529 None:intergenic 60.0%
ATGGAGGACTCTGGCTGAGC+CGG + chr8_2:28992979-28992998 Msa1243330:CDS 60.0%
GCCAAAGGAGGCAGTGAGAC+AGG + chr8_2:28993013-28993032 Msa1243330:CDS 60.0%
!! ACTGGCGGAGCGTCGGGAAT+TGG + chr8_2:28989086-28989105 Msa1243330:CDS 65.0%
!! CTGGCGGAGCGTCGGGAATT+GGG + chr8_2:28989087-28989106 Msa1243330:CDS 65.0%
CAGCGTGTGGGGTCCAAGCA+CGG + chr8_2:28992213-28992232 Msa1243330:intron 65.0%
! GTGGTGCGTGAAGGCGCATG+TGG + chr8_2:28992244-28992263 Msa1243330:intron 65.0%
! GTGCGTGAAGGCGCATGTGG+TGG + chr8_2:28992247-28992266 Msa1243330:intron 65.0%
! GTGAAGGCGCATGTGGTGGC+TGG + chr8_2:28992251-28992270 Msa1243330:intron 65.0%
AAGGCGCATGTGGTGGCTGG+TGG + chr8_2:28992254-28992273 Msa1243330:intron 65.0%
GTGCTCGCCGGAGAATCCAG+AGG + chr8_2:28992296-28992315 Msa1243330:intron 65.0%
CTCGCCGGAGAATCCAGAGG+TGG + chr8_2:28992299-28992318 Msa1243330:intron 65.0%
GCACCGTCACCAACCACCTC+TGG - chr8_2:28992315-28992334 None:intergenic 65.0%
! CCGGTGGTGGCATTTGCCAC+CGG - chr8_2:28992494-28992513 None:intergenic 65.0%
CCGGTGGCAAATGCCACCAC+CGG + chr8_2:28992491-28992510 Msa1243330:intron 65.0%
TGCTTCACTGCTGCCGGTGG+TGG - chr8_2:28992507-28992526 None:intergenic 65.0%
GGATTCTCCGGCGAGCACGG+TGG - chr8_2:28992294-28992313 None:intergenic 70.0%
CCACCGGCAGCACCGCCTAT+TGG - chr8_2:28992478-28992497 None:intergenic 70.0%
!! CCAATAGGCGGTGCTGCCGG+TGG + chr8_2:28992475-28992494 Msa1243330:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 28988871 28993500 28988871 ID=Msa1243330;Name=Msa1243330
chr8_2 mRNA 28988871 28993500 28988871 ID=Msa1243330-mRNA-1;Parent=Msa1243330;Name=Msa1243330-mRNA-1;_AED=0.29;_eAED=0.29;_QI=152|0.66|0.5|1|1|1|4|400|268
chr8_2 exon 28988871 28989380 28988871 ID=Msa1243330-mRNA-1:exon:9990;Parent=Msa1243330-mRNA-1
chr8_2 exon 28990790 28990864 28990790 ID=Msa1243330-mRNA-1:exon:9991;Parent=Msa1243330-mRNA-1
chr8_2 exon 28991180 28991398 28991180 ID=Msa1243330-mRNA-1:exon:9992;Parent=Msa1243330-mRNA-1
chr8_2 exon 28992946 28993500 28992946 ID=Msa1243330-mRNA-1:exon:9993;Parent=Msa1243330-mRNA-1
chr8_2 five_prime_UTR 28988871 28989022 28988871 ID=Msa1243330-mRNA-1:five_prime_utr;Parent=Msa1243330-mRNA-1
chr8_2 CDS 28989023 28989380 28989023 ID=Msa1243330-mRNA-1:cds;Parent=Msa1243330-mRNA-1
chr8_2 CDS 28990790 28990864 28990790 ID=Msa1243330-mRNA-1:cds;Parent=Msa1243330-mRNA-1
chr8_2 CDS 28991180 28991398 28991180 ID=Msa1243330-mRNA-1:cds;Parent=Msa1243330-mRNA-1
chr8_2 CDS 28992946 28993100 28992946 ID=Msa1243330-mRNA-1:cds;Parent=Msa1243330-mRNA-1
chr8_2 three_prime_UTR 28993101 28993500 28993101 ID=Msa1243330-mRNA-1:three_prime_utr;Parent=Msa1243330-mRNA-1
Gene Sequence

>Msa1243330

ATGGTAGCTTCAACCGAATCACCCTTCAAACCAGATATCTTAAAAGGCAAAGTAGCTTTAATAACTGGCGGAGCGTCGGGAATTGGGTTTGAAATATCAACGCAATTGGGGAAACATGGAGCGTCGGTTGCTGTGATGGGTCGTCGGAAGCAAGTTCTTCAATCTGCGGTTTCGGTTCTTCAATCGCTTTCGATTCCTGCTGTTGGGTTTGAAGGGGATGTGAGGAAGCAGGAAGATGCGGCGAGAGTTGTTGATTTGACTTTTAAGCATTTTGGGAGGATTGATATTCTTGTTAATGCTGCTGCTGGGAATTTTCTTGCTGCTGCTGAGGATCTTTCGCCGAATGGGTTTCGAACAGTTTTGGATATCGATTCTGTTGGCACATTCACTATGTGTCATGAAGCACTTAAGTATCTGAAGAAAGGGGCACCAGCTGTTGATTCCACTACAAGAAACTTGGCCCTGGAATGGGGAACAGATTATGATATTCGAGTCAATGGGATTGCACCGGGTCCAATAGGTGACACTCCTGGCATGAGTAAACTGGCTCCTGAAGAAATAGGTAGCAGAGGCAGAGATGAAATGCCTCTGTATAAACTTGGGGAGAAATGGGATATTGCAATGGCTGCTCTCTTCTTAGCATCAGATGCAGGAAAATACATTAATGGCGACACTATGATAGTTGATGGAGGACTCTGGCTGAGCCGGCCACGTTATTTGCCAAAGGAGGCAGTGAGACAGGTATCGCGAGAAGTAGAGAAAAGATCCAGAAATGAACCAATTGGTGTTCCAAAAAGTAAGCTATGA
Protein sequence

>Msa1243330

MVASTESPFKPDILKGKVALITGGASGIGFEISTQLGKHGASVAVMGRRKQVLQSAVSVLQSLSIPAVGFEGDVRKQEDAARVVDLTFKHFGRIDILVNAAAGNFLAAAEDLSPNGFRTVLDIDSVGTFTMCHEALKYLKKGAPAVDSTTRNLALEWGTDYDIRVNGIAPGPIGDTPGMSKLAPEEIGSRGRDEMPLYKLGEKWDIAMAALFLASDAGKYINGDTMIVDGGLWLSRPRYLPKEAVRQVSREVEKRSRNEPIGVPKSKL*