AlfalfaGEDB | Msa1245260

M. sativa cultivar zhongmu-4 / Msa1245260

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1245260	XP_039684974.1	68.323	805	180	11	7	751	15	804	0.0	1082
Msa1245260	XP_039684974.1	68.987	790	189	10	3	749	866	1642	0.0	1061

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1245260	sp\|Q9LW83\|CE101_ARATH	36.623	770	372	16	59	719	55	817	1.93e-143	445

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1245260	G7L9B8	68.323	805	180	11	7	751	15	804	0.0	1082

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1243610	Msa1245260	0.829626	4.633492e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1245260	MtrunA17_Chr8g0357961	68.323	805	180	11	7	751	15	804	1082
Msa1245260	MtrunA17_Chr8g0358071	69.057	795	195	9	3	754	12	798	1078
Msa1245260	MtrunA17_Chr8g0357991	67.778	810	185	11	3	751	11	805	1071
Msa1245260	MtrunA17_Chr8g0358031	68.961	799	193	12	3	754	12	802	1050
Msa1245260	MtrunA17_Chr8g0357881	67.547	795	203	11	3	754	17	799	1049
Msa1245260	MtrunA17_Chr8g0358081	67.758	794	193	12	3	754	11	783	1049
Msa1245260	MtrunA17_Chr8g0358101	67.588	796	194	13	3	754	11	786	1040
Msa1245260	MtrunA17_Chr8g0358121	68.050	795	191	12	3	754	11	785	1028
Msa1245260	MtrunA17_Chr8g0357981	70.860	628	137	5	163	749	1	623	890
Msa1245260	MtrunA17_Chr8g0357691	53.826	758	292	15	11	721	22	768	754

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1245260	AT3G16030.1	36.623	770	372	16	59	719	55	817	1.96e-144	445
Msa1245260	AT3G16030.6	34.911	845	405	20	4	719	10	838	5.37e-142	439
Msa1245260	AT3G16030.2	37.283	692	312	15	145	719	8	694	1.69e-131	407
Msa1245260	AT1G11340.1	36.021	769	375	25	58	722	49	804	6.35e-131	409
Msa1245260	AT4G21390.1	35.352	809	406	19	24	726	26	823	3.65e-129	405
Msa1245260	AT1G65790.1	35.075	804	395	21	53	747	53	838	1.14e-128	403
Msa1245260	AT1G65800.1	36.143	783	369	22	53	722	53	817	8.53e-127	399
Msa1245260	AT4G21380.1	34.424	825	388	24	13	722	33	819	2.94e-126	397
Msa1245260	AT1G11330.2	46.939	441	187	5	330	730	389	822	5.68e-126	396
Msa1245260	AT1G11330.2	30.556	180	115	5	42	215	47	222	3.39e-13	73.9

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Find 138 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTTTCAAGATCCTC+AGG	0.508410	8_2:-35133647	Msa1245260:CDS
AAAATTTGTTTCGAAAGAGA+AGG	0.523070	8_2:+35136861	None:intergenic
AAACAAGGCAAGTATTATCT+TGG	0.386305	8_2:-35137465	Msa1245260:CDS
AACTACATAATCTGACTTAA+TGG	0.219713	8_2:+35137341	None:intergenic
AACTTGTAGGGAACTTGGTG+AGG	0.578933	8_2:-35136710	Msa1245260:CDS
AAGAAGGTCAATTGAACATA+AGG	0.405426	8_2:-35137005	Msa1245260:CDS
AAGCGCTTCAACATTATAGA+AGG	0.432589	8_2:-35132984	Msa1245260:CDS
AAGTCTGATGTCTATAGCTT+TGG	0.433254	8_2:-35132642	Msa1245260:CDS
AAGTTAGGTCAGGGAGGCTA+TGG	0.457003	8_2:-35133975	Msa1245260:CDS
AATAAACTCTTTGTCCCATT+TGG	0.256263	8_2:+35137177	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATACTTATTATGGTTGTGG+TGG	-	chr8_2:35131961-35131980	Msa1245260:three_prime_UTR	30.0%
TATAAATCCATTGTATCACC+AGG	+	chr8_2:35132038-35132057	None:intergenic	30.0%
TTCGGTCTATATTCTAAACA+AGG	-	chr8_2:35132068-35132087	Msa1245260:three_prime_UTR	30.0%
AAACAAGGCAAGTATTATCT+TGG	-	chr8_2:35132083-35132102	Msa1245260:intron	30.0%
TATAGTTAAGTATCTGTCCT+CGG	+	chr8_2:35132132-35132151	None:intergenic	30.0%
TGGTAGAAATAATGTAGTGT+GGG	-	chr8_2:35132166-35132185	Msa1245260:CDS	30.0%
CTACATAATCTGACTTAATG+GGG	+	chr8_2:35132208-35132227	None:intergenic	30.0%
ATAAACTCTTTGTCCCATTT+GGG	+	chr8_2:35132373-35132392	None:intergenic	30.0%
AATAAACTCTTTGTCCCATT+TGG	+	chr8_2:35132374-35132393	None:intergenic	30.0%
ATGGGACAAAGAGTTTATTA+TGG	-	chr8_2:35132375-35132394	Msa1245260:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	35131951	35137619	35131951	ID=Msa1245260;Name=Msa1245260
chr8_2	mRNA	35131951	35137619	35131951	ID=Msa1245260-mRNA-1;Parent=Msa1245260;Name=Msa1245260-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.66\|0.71\|1\|0.83\|0.71\|7\|154\|754
chr8_2	exon	35131951	35132091	35131951	ID=Msa1245260-mRNA-1:exon:11143;Parent=Msa1245260-mRNA-1
chr8_2	exon	35132150	35132483	35132150	ID=Msa1245260-mRNA-1:exon:11142;Parent=Msa1245260-mRNA-1
chr8_2	exon	35132560	35132710	35132560	ID=Msa1245260-mRNA-1:exon:11141;Parent=Msa1245260-mRNA-1
chr8_2	exon	35132852	35133038	35132852	ID=Msa1245260-mRNA-1:exon:11140;Parent=Msa1245260-mRNA-1
chr8_2	exon	35133492	35133702	35133492	ID=Msa1245260-mRNA-1:exon:11139;Parent=Msa1245260-mRNA-1
chr8_2	exon	35133962	35134158	35133962	ID=Msa1245260-mRNA-1:exon:11138;Parent=Msa1245260-mRNA-1
chr8_2	exon	35136422	35137619	35136422	ID=Msa1245260-mRNA-1:exon:11137;Parent=Msa1245260-mRNA-1
chr8_2	CDS	35136422	35137619	35136422	ID=Msa1245260-mRNA-1:cds;Parent=Msa1245260-mRNA-1
chr8_2	CDS	35133962	35134158	35133962	ID=Msa1245260-mRNA-1:cds;Parent=Msa1245260-mRNA-1
chr8_2	CDS	35133492	35133702	35133492	ID=Msa1245260-mRNA-1:cds;Parent=Msa1245260-mRNA-1
chr8_2	CDS	35132852	35133038	35132852	ID=Msa1245260-mRNA-1:cds;Parent=Msa1245260-mRNA-1
chr8_2	CDS	35132560	35132710	35132560	ID=Msa1245260-mRNA-1:cds;Parent=Msa1245260-mRNA-1
chr8_2	CDS	35132163	35132483	35132163	ID=Msa1245260-mRNA-1:cds;Parent=Msa1245260-mRNA-1
chr8_2	three_prime_UTR	35132150	35132162	35132150	ID=Msa1245260-mRNA-1:three_prime_utr;Parent=Msa1245260-mRNA-1
chr8_2	three_prime_UTR	35131951	35132091	35131951	ID=Msa1245260-mRNA-1:three_prime_utr;Parent=Msa1245260-mRNA-1

Gene Sequence

>Msa1245260

ATGAGTATCATATACTTATTATGGTTGTGGTGGAGTACTAGTACTGCTACTATTCTTGTTAAAGCACAAAGTGATAGTTTGAAGCCTGGTGATACAATGGATTTATATTTGAATAGCTTCGGTCTATATTCTAAACAAGGCAAGTATTATCTTGGTCTTACTGTTTTTAATGGTAATACCGAGGACAGATACTTAACTATATTTAGTAGTGCGGGTGGTAGAAATAATGTAGTGTGGGTTTATGATAATAATAACCCCATTAAGTCAGATTATGTAGTTTTATCACTAGACTACTCTGGTGTGCTCAAAATAGAATCTCTAAATAGTAAACCAAGAATCATTTACTCTTCACCTCAACCCATAAACAACACTGTGGCAACTATGTTGGACACAGGTAACTTTGTGCTTCAACAACTTCACCCAAATGGGACAAAGAGTTTATTATGGCAGAGTTTTGATTCTCCCGTAGACACTTTGTTACCAACGATGAAGTTAGGTGTTAATAGAAAAACTGGACATAATTGGTCATTAGTTTCGACGTTTACTCATTTCCTCGCGATTTCGGGTGAATTTAGTCTTGAATGGGAACCAAAAGAAGGTCAATTGAACATAAGGAAAAGCGGCAAAGTGCATTGGAAAATCGGAAAACTTAGGAGCAACGGATTATTCGAGAACATTCCAGAAGATGTGCAACGTGGGTATCGATATGTGATCATCTCTAACACAGATGAAGACTCCTTCTCTTTCGAAACAAATTTTAAGAAGTTTACAGGATGGGCACTATTCAATACTGGACAGTTATGGAGTAACAAAGGAGACATTGCTAATGCAGATATGTGTTATGGATATAATAGTAATGGAGGGTGCCAAAAATGGGAGGATATTCCAACTTGTAGGGAACTTGGTGAGGTGTTCCATACAAAGATTGGTATGCCTGCTAATGACAATGCAACATTTGAAGAAGATGCAAGTTATGGTTACAGTGATTGTAAGTCAAGTTGTTGGAGAAACTGTAATTGCACCGGATTCAAGGAATATTATAGTAATGGGACTGGATGTATATTCTATTCACAGAATTTCACCAAAGATCTTAACTTTGGGGACAATGGTAACTTTCATGTCTTGGTAAAGCCAATAAAGGCAGCCTCAACGGCTATTCGTAGTAAGCCAATAAAGGAAGCCTCAACGGCAATTCATGAGAAGAAAAGTAAAAGAAAGAAAACTGAGATGCGAAAATTGGCAGCTTTTGATGAATCCTATGGTCTCAAAGATCTTGAAGACGATTTTAAGGGACATGATATAAAGGTTTTAGACTATGCAACAATTTTGGAATCAACTATAGATTTTTCCCCTGAAAACAAGTTAGGTCAGGGAGGCTATGGACCTGTTTATAAGGGAATCTTGCCAACAGGACAAGAAGTTGCTGTAAAAAGACTTTCAAGATCCTCAGGACAAGGAATTGTGGAATTCAAAAATGAATTGGTACTTATATGTGAACTTCAGCACACAAATCTTGTACAACTACTTGGTTGTTGCATTCATGAAGAAGAAAGGATTCTAATTTACGAATATATGCCAAACAAAAGCTTGGATTTCTATCTATTTGATTGTACAAAAAGGAAGTACCTAGATTGGAACAAGCGCTTCAACATTATAGAAGGAATTTCTCAAGGATTACTCTATCTTCATAAGTACTCAAGACTCAAAATCATTCATAGAGACTTGAAAGCAAGCAACATCCTTCTTGATGAGAATATGAACCCAAAAATTTCTGATTTTGGTATGGCAAGAATTGGATACATGTCTCCAGAATATGCCATGGAAGGAGTTTGTTCTACAAAGTCTGATGTCTATAGCTTTGGAGTGTTGCTGCTTGAAATTGTTTGTGGAAGAAAAAATAATAGCTTTTATGATGATGATGGTCCACTAAATCTAATCGGACATGCATGGGAGCTATGGAATGATGGTGAGTATCTACTGTTACTGGATCCAACATTAAGTGACACATTTGTTCCTGATGAAGTGAAAAGGTGTATTCATGTTGGCCTCTTATGTGTAGAACACTATGCAAATGATCGACCTACAATGTCTGATGTTATATCAATGTTAACAAACAAATATGATCTCACAAACTTACCAAGAAGACCAGCATTTTATGTTAGAAGAGACATCCTTGATGGAGAAACAACTTATAAGCTGCCAGACACCGACACCTATTCTACAACAGCAGTTTCAACCTCATGTGAAGTCGAAGAGAACATATAA

Protein sequence

>Msa1245260

MSIIYLLWLWWSTSTATILVKAQSDSLKPGDTMDLYLNSFGLYSKQGKYYLGLTVFNGNTEDRYLTIFSSAGGRNNVVWVYDNNNPIKSDYVVLSLDYSGVLKIESLNSKPRIIYSSPQPINNTVATMLDTGNFVLQQLHPNGTKSLLWQSFDSPVDTLLPTMKLGVNRKTGHNWSLVSTFTHFLAISGEFSLEWEPKEGQLNIRKSGKVHWKIGKLRSNGLFENIPEDVQRGYRYVIISNTDEDSFSFETNFKKFTGWALFNTGQLWSNKGDIANADMCYGYNSNGGCQKWEDIPTCRELGEVFHTKIGMPANDNATFEEDASYGYSDCKSSCWRNCNCTGFKEYYSNGTGCIFYSQNFTKDLNFGDNGNFHVLVKPIKAASTAIRSKPIKEASTAIHEKKSKRKKTEMRKLAAFDESYGLKDLEDDFKGHDIKVLDYATILESTIDFSPENKLGQGGYGPVYKGILPTGQEVAVKRLSRSSGQGIVEFKNELVLICELQHTNLVQLLGCCIHEEERILIYEYMPNKSLDFYLFDCTKRKYLDWNKRFNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNPKISDFGMARIGYMSPEYAMEGVCSTKSDVYSFGVLLLEIVCGRKNNSFYDDDGPLNLIGHAWELWNDGEYLLLLDPTLSDTFVPDEVKRCIHVGLLCVEHYANDRPTMSDVISMLTNKYDLTNLPRRPAFYVRRDILDGETTYKLPDTDTYSTTAVSTSCEVEENI*