Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247130 | XP_013445707.1 | 100.000 | 120 | 0 | 0 | 1 | 120 | 1 | 120 | 6.84e-79 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247130 | sp|P40590|RL34_PEA | 97.500 | 120 | 3 | 0 | 1 | 120 | 1 | 120 | 3.24e-79 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0573500 | Msa1247130 | 0.805931 | 1.052044e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247130 | MtrunA17_Chr8g0361721 | 100.000 | 120 | 0 | 0 | 1 | 120 | 1 | 120 | 6.29e-83 | 238 |
| Msa1247130 | MtrunA17_Chr7g0217171 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 2.16e-81 | 234 |
| Msa1247130 | MtrunA17_Chr5g0417101 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 1.92e-79 | 229 |
| Msa1247130 | MtrunA17_Chr8g0343321 | 76.786 | 56 | 12 | 1 | 66 | 120 | 66 | 121 | 1.68e-21 | 82.8 |
| Msa1247130 | MtrunA17_Chr7g0217651 | 75.510 | 49 | 12 | 0 | 1 | 49 | 1 | 49 | 2.47e-21 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247130 | AT1G26880.1 | 90.833 | 120 | 11 | 0 | 1 | 120 | 1 | 120 | 9.14e-75 | 218 |
| Msa1247130 | AT1G69620.1 | 91.597 | 119 | 10 | 0 | 1 | 119 | 1 | 119 | 3.30e-74 | 216 |
| Msa1247130 | AT3G28900.1 | 87.500 | 120 | 15 | 0 | 1 | 120 | 1 | 120 | 7.71e-72 | 210 |
| Msa1247130 | AT1G26880.2 | 91.304 | 92 | 8 | 0 | 1 | 92 | 1 | 92 | 9.86e-58 | 174 |
Find 43 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATCCTCTTTCCAGTAAC+AGG | 0.237420 | 8_2:-39623777 | None:intergenic |
| TTCACAGTCCTCCTGTTTCT+AGG | 0.275401 | 8_2:-39626166 | None:intergenic |
| TAGAATCATCCGTGCTTTCT+TGG | 0.293017 | 8_2:+39626361 | Msa1247130:intron |
| TGGTCCACTAGCTCTCTTCT+TGG | 0.301308 | 8_2:-39623748 | None:intergenic |
| GGACCAAAATGCCCTGTTAC+TGG | 0.307357 | 8_2:+39623765 | Msa1247130:CDS |
| AACCCTATGTTGGTTGGATT+TGG | 0.320720 | 8_2:-39623584 | None:intergenic |
| TTTCCAGTAACAGGGCATTT+TGG | 0.356509 | 8_2:-39623768 | None:intergenic |
| GCTACAAAATGAATGGTATA+TGG | 0.366926 | 8_2:-39626716 | None:intergenic |
| GATCTAGGTTACCTAGAAAC+AGG | 0.420037 | 8_2:+39626155 | Msa1247130:CDS |
| CCTATGTTGGTTGGATTTGG+TGG | 0.421829 | 8_2:-39623581 | None:intergenic |
| ATTTCAGGCTACAAAATGAA+TGG | 0.433470 | 8_2:-39626723 | None:intergenic |
| AAAGGAAAAGCAAGCTTTGA+AGG | 0.441122 | 8_2:+39626430 | Msa1247130:CDS |
| CTGGAGGTGCTGTTAGAGAA+AGG | 0.447721 | 8_2:+39626212 | Msa1247130:CDS |
| CCACTGAGTACAAGAGATCT+AGG | 0.456424 | 8_2:+39626140 | Msa1247130:CDS |
| GTTACTGGAAAGAGGATTCA+AGG | 0.471253 | 8_2:+39623780 | Msa1247130:CDS |
| CCACCAAATCCAACCAACAT+AGG | 0.484896 | 8_2:+39623581 | Msa1247130:CDS |
| TTTCAGCGACGAGACGGAGA+AGG | 0.495451 | 8_2:-39623499 | None:intergenic |
| TTCTTCTTTCAGCGACGAGA+CGG | 0.502438 | 8_2:-39623505 | None:intergenic |
| ATAGCTGTGGCGCCTGCGGT+AGG | 0.504275 | 8_2:-39623557 | None:intergenic |
| TTTGACAACCCTATGTTGGT+TGG | 0.518215 | 8_2:-39623590 | None:intergenic |
| AGAAGAAGAAAATGGTTCAG+AGG | 0.548716 | 8_2:+39623530 | Msa1247130:exon |
| AGGACTGTGAATCGTGCCTA+TGG | 0.552813 | 8_2:+39626178 | Msa1247130:CDS |
| CACCAAATCCAACCAACATA+GGG | 0.560357 | 8_2:+39623582 | Msa1247130:CDS |
| TACTCAGTGGGTCTTAGATG+TGG | 0.563615 | 8_2:-39626127 | None:intergenic |
| AATGCCCTGTTACTGGAAAG+AGG | 0.571512 | 8_2:+39623772 | Msa1247130:CDS |
| TTCAGAGGCTTACCTACCGC+AGG | 0.575371 | 8_2:+39623545 | Msa1247130:CDS |
| ACAACCAAGAAGAGAGCTAG+TGG | 0.581836 | 8_2:+39623744 | Msa1247130:CDS |
| CTAGATCTCTTGTACTCAGT+GGG | 0.583788 | 8_2:-39626139 | None:intergenic |
| AAGGAAAAGCAAGCTTTGAA+GGG | 0.585465 | 8_2:+39626431 | Msa1247130:CDS |
| TGGCATAGCTGTGGCGCCTG+CGG | 0.587442 | 8_2:-39623561 | None:intergenic |
| CATAGGGTTGTCAAAACACC+CGG | 0.588675 | 8_2:+39623598 | Msa1247130:CDS |
| GCTCTTCAACCAAGAAAGCA+CGG | 0.590956 | 8_2:-39626370 | None:intergenic |
| TTACTGGAAAGAGGATTCAA+GGG | 0.591954 | 8_2:+39623781 | Msa1247130:CDS |
| TTGTGCTTCTCAAAAGCCAA+TGG | 0.605443 | 8_2:-39626762 | None:intergenic |
| ACTGTGAATCGTGCCTATGG+TGG | 0.611220 | 8_2:+39626181 | Msa1247130:CDS |
| CTTGAAGATCCAAAAGACAA+AGG | 0.616073 | 8_2:+39626412 | Msa1247130:CDS |
| GAATCCTCTTTCCAGTAACA+GGG | 0.623856 | 8_2:-39623776 | None:intergenic |
| CCTAGATCTCTTGTACTCAG+TGG | 0.628511 | 8_2:-39626140 | None:intergenic |
| TGGATTTGGTGGCATAGCTG+TGG | 0.632564 | 8_2:-39623570 | None:intergenic |
| TCCAGATAAAACTCCACCAT+AGG | 0.634243 | 8_2:-39626194 | None:intergenic |
| CAAACAAAACTGTATCACAA+TGG | 0.639917 | 8_2:-39626606 | None:intergenic |
| TACTGGAAAGAGGATTCAAG+GGG | 0.671922 | 8_2:+39623782 | Msa1247130:CDS |
| CTAGGTTACCTAGAAACAGG+AGG | 0.687862 | 8_2:+39626158 | Msa1247130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTGTAATACTTTA+AGG | + | chr8_2:39624141-39624160 | Msa1247130:intron | 10.0% |
| !! | AATTTATTGTAATACTTTAA+GGG | + | chr8_2:39624142-39624161 | Msa1247130:intron | 10.0% |
| !! | ATAAAAAAATAATGCATTAA+TGG | - | chr8_2:39626289-39626308 | None:intergenic | 10.0% |
| !!! | TAATTTTTTATGTAACAATG+AGG | + | chr8_2:39624714-39624733 | Msa1247130:intron | 15.0% |
| !! | AAAGCAATAAAACTTAAAAA+GGG | - | chr8_2:39625058-39625077 | None:intergenic | 15.0% |
| !! | TTGCATATATTTATTTATCA+AGG | + | chr8_2:39625593-39625612 | Msa1247130:intron | 15.0% |
| !! | ATATTTATTTATCAAGGTTA+AGG | + | chr8_2:39625599-39625618 | Msa1247130:intron | 15.0% |
| !!! | TACTTTTCAATTTGAAATCA+CGG | + | chr8_2:39624211-39624230 | Msa1247130:intron | 20.0% |
| !! | TTCTTATTGGTCAAAAATAA+TGG | - | chr8_2:39624356-39624375 | None:intergenic | 20.0% |
| !!! | TACTTTCCTTTTCTAAATTA+CGG | - | chr8_2:39624527-39624546 | None:intergenic | 20.0% |
| !! | AAATATTATTCTTGTGTGTT+TGG | - | chr8_2:39624584-39624603 | None:intergenic | 20.0% |
| !! | AAAATTTAGGAAACATCATA+TGG | - | chr8_2:39624769-39624788 | None:intergenic | 20.0% |
| !!! | TATGATGTTTCCTAAATTTT+TGG | + | chr8_2:39624769-39624788 | Msa1247130:intron | 20.0% |
| !!! | ATGATGTTTCCTAAATTTTT+GGG | + | chr8_2:39624770-39624789 | Msa1247130:intron | 20.0% |
| !! | ATATAAGATCCCAAAAATTT+AGG | - | chr8_2:39624782-39624801 | None:intergenic | 20.0% |
| !! | ATACTCTTCAAAAAAAATTG+AGG | - | chr8_2:39624934-39624953 | None:intergenic | 20.0% |
| !! | CATAACAAAATTGAACTAAA+AGG | - | chr8_2:39625027-39625046 | None:intergenic | 20.0% |
| !! | CAAAGCAATAAAACTTAAAA+AGG | - | chr8_2:39625059-39625078 | None:intergenic | 20.0% |
| !!! | TCATGATGTTTTAAAATAAG+TGG | - | chr8_2:39625776-39625795 | None:intergenic | 20.0% |
| !! | AATAAAACAATCACTAAGTT+AGG | - | chr8_2:39625957-39625976 | None:intergenic | 20.0% |
| !!! | ATACAAAAACTTTTCATTTC+AGG | - | chr8_2:39626741-39626760 | None:intergenic | 20.0% |
| ! | AATACTATTAGTATAGTAGC+TGG | + | chr8_2:39624101-39624120 | Msa1247130:intron | 25.0% |
| !! | CAAAAATAATGGAGAGAAAA+AGG | - | chr8_2:39624345-39624364 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr8_2:39624369-39624388 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr8_2:39624368-39624387 | Msa1247130:intron | 25.0% |
| !! | TTTTTATGTAACAATGAGGT+TGG | + | chr8_2:39624718-39624737 | Msa1247130:intron | 25.0% |
| !! | TAGAACTAAACTTTTGAACA+AGG | - | chr8_2:39624820-39624839 | None:intergenic | 25.0% |
| ! | ACATAACATTACCCTTAAAA+GGG | - | chr8_2:39624972-39624991 | None:intergenic | 25.0% |
| ! | AACATAACATTACCCTTAAA+AGG | - | chr8_2:39624973-39624992 | None:intergenic | 25.0% |
| ! | AACAAAATTGAACTAAAAGG+AGG | - | chr8_2:39625024-39625043 | None:intergenic | 25.0% |
| !!! | TACTAGTTTTCTTTTCCTTT+TGG | - | chr8_2:39625245-39625264 | None:intergenic | 25.0% |
| !!! | AGTACTGGATTTTTTTTTGA+AGG | + | chr8_2:39625261-39625280 | Msa1247130:intron | 25.0% |
| ! | CAAAATACAATTTCAAAGAC+AGG | - | chr8_2:39625345-39625364 | None:intergenic | 25.0% |
| ! | ACGACTAGAATAATGAAATT+TGG | + | chr8_2:39625548-39625567 | Msa1247130:intron | 25.0% |
| ! | TATCTAACTGTATCTAGAAA+AGG | + | chr8_2:39625847-39625866 | Msa1247130:intron | 25.0% |
| ! | TAGGTTATTAGGTTAAAACA+GGG | - | chr8_2:39625938-39625957 | None:intergenic | 25.0% |
| ! | TTAGGTTATTAGGTTAAAAC+AGG | - | chr8_2:39625939-39625958 | None:intergenic | 25.0% |
| ! | AATCACTAAGTTAGGTTATT+AGG | - | chr8_2:39625949-39625968 | None:intergenic | 25.0% |
| !! | TTATGCTACATTGATACTTT+TGG | + | chr8_2:39625986-39626005 | Msa1247130:intron | 25.0% |
| !! | TATGCTACATTGATACTTTT+GGG | + | chr8_2:39625987-39626006 | Msa1247130:intron | 25.0% |
| !!! | TTTGTTCTGCTTAACTTTTT+TGG | + | chr8_2:39626235-39626254 | Msa1247130:intron | 25.0% |
| !! | AAACGAGATAAAGATCTTTT+TGG | + | chr8_2:39626466-39626485 | Msa1247130:three_prime_UTR | 25.0% |
| !!! | TTGTTAGTTTTGTGCTTATT+TGG | + | chr8_2:39626547-39626566 | Msa1247130:three_prime_UTR | 25.0% |
| !! | GAAAAGTTTTTGTATACCAT+TGG | + | chr8_2:39626746-39626765 | Msa1247130:three_prime_UTR | 25.0% |
| GAAGAAGAAGAAGAAGAAAA+TGG | + | chr8_2:39623522-39623541 | Msa1247130:exon | 30.0% | |
| !! | TAATTGGATTTGTTGAATGC+AGG | + | chr8_2:39623702-39623721 | Msa1247130:intron | 30.0% |
| TCAGATCAGAAGAAATGAAA+AGG | - | chr8_2:39623817-39623836 | None:intergenic | 30.0% | |
| ACTAAGATTAAATGCACTGT+CGG | + | chr8_2:39623916-39623935 | Msa1247130:intron | 30.0% | |
| !!! | TTTGCCGTTATGTTTTAACA+TGG | + | chr8_2:39623981-39624000 | Msa1247130:intron | 30.0% |
| !!! | TTGCCGTTATGTTTTAACAT+GGG | + | chr8_2:39623982-39624001 | Msa1247130:intron | 30.0% |
| AACCCCATGTTAAAACATAA+CGG | - | chr8_2:39623988-39624007 | None:intergenic | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | + | chr8_2:39624273-39624292 | Msa1247130:intron | 30.0% |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr8_2:39624394-39624413 | Msa1247130:intron | 30.0% | |
| TGTTGTCCGTAATTTAGAAA+AGG | + | chr8_2:39624518-39624537 | Msa1247130:intron | 30.0% | |
| ! | AACTAAACTTTTGAACAAGG+CGG | - | chr8_2:39624817-39624836 | None:intergenic | 30.0% |
| !!! | TGTCATTTTGAACCCTTTTA+AGG | + | chr8_2:39624957-39624976 | Msa1247130:intron | 30.0% |
| !! | GTCATTTTGAACCCTTTTAA+GGG | + | chr8_2:39624958-39624977 | Msa1247130:intron | 30.0% |
| TTTATGCTTACTTTGTACAC+TGG | + | chr8_2:39625083-39625102 | Msa1247130:intron | 30.0% | |
| GATTCAATATTCGTTCCAAA+AGG | + | chr8_2:39625227-39625246 | Msa1247130:intron | 30.0% | |
| AAGGAAAAGAAAACTAGTAC+TGG | + | chr8_2:39625246-39625265 | Msa1247130:intron | 30.0% | |
| TGCAAACACTTTATTATAGC+TGG | + | chr8_2:39625428-39625447 | Msa1247130:intron | 30.0% | |
| ! | ATTTATGTGATTAGAGTGTC+TGG | - | chr8_2:39625507-39625526 | None:intergenic | 30.0% |
| CCTTTCTTTAGTAAGATGAA+TGG | - | chr8_2:39625663-39625682 | None:intergenic | 30.0% | |
| CCATTCATCTTACTAAAGAA+AGG | + | chr8_2:39625660-39625679 | Msa1247130:intron | 30.0% | |
| ATGCATAAAGGACTTATACA+AGG | - | chr8_2:39625894-39625913 | None:intergenic | 30.0% | |
| AGGTTATTAGGTTAAAACAG+GGG | - | chr8_2:39625937-39625956 | None:intergenic | 30.0% | |
| !! | TAATTGCTTTTGCATTACTC+AGG | + | chr8_2:39626016-39626035 | Msa1247130:intron | 30.0% |
| CAAACAAAACTGTATCACAA+TGG | - | chr8_2:39626609-39626628 | None:intergenic | 30.0% | |
| ! | TTGTCTCAATTTTCTCTTGA+TGG | + | chr8_2:39626626-39626645 | Msa1247130:three_prime_UTR | 30.0% |
| GCTACAAAATGAATGGTATA+TGG | - | chr8_2:39626719-39626738 | None:intergenic | 30.0% | |
| ATTTCAGGCTACAAAATGAA+TGG | - | chr8_2:39626726-39626745 | None:intergenic | 30.0% | |
| AGAAGAAGAAAATGGTTCAG+AGG | + | chr8_2:39623530-39623549 | Msa1247130:exon | 35.0% | |
| !! | GACGTGTCGTTTAATCTAAT+TGG | + | chr8_2:39623686-39623705 | Msa1247130:intron | 35.0% |
| TTACTGGAAAGAGGATTCAA+GGG | + | chr8_2:39623781-39623800 | Msa1247130:CDS | 35.0% | |
| !!! | TGCCGTTATGTTTTAACATG+GGG | + | chr8_2:39623983-39624002 | Msa1247130:intron | 35.0% |
| ! | ATACTTTAAGGGTGTGTGTT+TGG | + | chr8_2:39624153-39624172 | Msa1247130:intron | 35.0% |
| GTCCAAAAGTTGTCAAAAAG+TGG | - | chr8_2:39624278-39624297 | None:intergenic | 35.0% | |
| GAAATATCCAGCTAAGTAGT+TGG | + | chr8_2:39624619-39624638 | Msa1247130:intron | 35.0% | |
| AATCAAACCAACTACTTAGC+TGG | - | chr8_2:39624629-39624648 | None:intergenic | 35.0% | |
| TGGTTTAGTCATTGCAATAG+TGG | + | chr8_2:39625103-39625122 | Msa1247130:intron | 35.0% | |
| !! | TACATGCTATAGCGGATAAA+GGG | - | chr8_2:39625133-39625152 | None:intergenic | 35.0% |
| TTTATCCGCTATAGCATGTA+GGG | + | chr8_2:39625133-39625152 | Msa1247130:intron | 35.0% | |
| TGAAGGAAGAAAACTAGTAC+TGG | + | chr8_2:39625278-39625297 | Msa1247130:intron | 35.0% | |
| ! | AAAACTAGTACTGGATGTCA+TGG | + | chr8_2:39625287-39625306 | Msa1247130:intron | 35.0% |
| ! | GAAATTGTATTTTGCGAAGC+TGG | + | chr8_2:39625351-39625370 | Msa1247130:intron | 35.0% |
| TAAAGAAAGGTCTCAACACT+AGG | + | chr8_2:39625673-39625692 | Msa1247130:intron | 35.0% | |
| GGTAGTACTTCTCAAACTAT+GGG | - | chr8_2:39625755-39625774 | None:intergenic | 35.0% | |
| TGGTAGTACTTCTCAAACTA+TGG | - | chr8_2:39625756-39625775 | None:intergenic | 35.0% | |
| ! | GGCGCGTTTTTAATAGTAAT+TGG | + | chr8_2:39626037-39626056 | Msa1247130:intron | 35.0% |
| ACTTTGCTTAATCATGTCTC+TGG | + | chr8_2:39626333-39626352 | Msa1247130:intron | 35.0% | |
| CTTGAAGATCCAAAAGACAA+AGG | + | chr8_2:39626412-39626431 | Msa1247130:CDS | 35.0% | |
| !! | CTTGCTTTTCCTTTGTCTTT+TGG | - | chr8_2:39626424-39626443 | None:intergenic | 35.0% |
| ! | AAAGGAAAAGCAAGCTTTGA+AGG | + | chr8_2:39626430-39626449 | Msa1247130:CDS | 35.0% |
| !! | AAGGAAAAGCAAGCTTTGAA+GGG | + | chr8_2:39626431-39626450 | Msa1247130:CDS | 35.0% |
| ! | CGAGATAAAGATCTTTTTGG+AGG | + | chr8_2:39626469-39626488 | Msa1247130:three_prime_UTR | 35.0% |
| !!! | GATCTTTTTGGAGGAGTATT+AGG | + | chr8_2:39626478-39626497 | Msa1247130:three_prime_UTR | 35.0% |
| CACCAAATCCAACCAACATA+GGG | + | chr8_2:39623582-39623601 | Msa1247130:CDS | 40.0% | |
| ! | AACCCTATGTTGGTTGGATT+TGG | - | chr8_2:39623587-39623606 | None:intergenic | 40.0% |
| TTTGACAACCCTATGTTGGT+TGG | - | chr8_2:39623593-39623612 | None:intergenic | 40.0% | |
| !!! | GTGTTTTGACAACCCTATGT+TGG | - | chr8_2:39623597-39623616 | None:intergenic | 40.0% |
| ! | AGAGGTTAGTTACCACTTAC+CGG | - | chr8_2:39623620-39623639 | None:intergenic | 40.0% |
| CAACAAAGTGAAGAGAAGAG+AGG | - | chr8_2:39623638-39623657 | None:intergenic | 40.0% | |
| ! | TTGTTGTCGTTTACTAAGCG+AGG | + | chr8_2:39623652-39623671 | Msa1247130:intron | 40.0% |
| !! | TTGGATTTGTTGAATGCAGG+TGG | + | chr8_2:39623705-39623724 | Msa1247130:intron | 40.0% |
| !! | TTTCCAGTAACAGGGCATTT+TGG | - | chr8_2:39623771-39623790 | None:intergenic | 40.0% |
| GAATCCTCTTTCCAGTAACA+GGG | - | chr8_2:39623779-39623798 | None:intergenic | 40.0% | |
| TGAATCCTCTTTCCAGTAAC+AGG | - | chr8_2:39623780-39623799 | None:intergenic | 40.0% | |
| GTTACTGGAAAGAGGATTCA+AGG | + | chr8_2:39623780-39623799 | Msa1247130:CDS | 40.0% | |
| TACTGGAAAGAGGATTCAAG+GGG | + | chr8_2:39623782-39623801 | Msa1247130:CDS | 40.0% | |
| ! | ATGGGGTTTGAAGTGTTATG+TGG | + | chr8_2:39624000-39624019 | Msa1247130:intron | 40.0% |
| GCAATATGATGAGTTCTCGT+TGG | + | chr8_2:39624022-39624041 | Msa1247130:intron | 40.0% | |
| ! | TTTAAGGGTGTGTGTTTGGA+TGG | + | chr8_2:39624157-39624176 | Msa1247130:intron | 40.0% |
| TTTGGATGGAGGGTTTAGAA+GGG | + | chr8_2:39624171-39624190 | Msa1247130:intron | 40.0% | |
| TTCTTGTGTGTTTGGATCGA+GGG | - | chr8_2:39624576-39624595 | None:intergenic | 40.0% | |
| ATTCTTGTGTGTTTGGATCG+AGG | - | chr8_2:39624577-39624596 | None:intergenic | 40.0% | |
| GTTAATTGCGGCGAAATTGT+GGG | + | chr8_2:39624863-39624882 | Msa1247130:intron | 40.0% | |
| !! | CTACATGCTATAGCGGATAA+AGG | - | chr8_2:39625134-39625153 | None:intergenic | 40.0% |
| CTTTATCCGCTATAGCATGT+AGG | + | chr8_2:39625132-39625151 | Msa1247130:intron | 40.0% | |
| TTATCCGCTATAGCATGTAG+GGG | + | chr8_2:39625134-39625153 | Msa1247130:intron | 40.0% | |
| CTCTTAAGATCAAGCAGCAT+AGG | - | chr8_2:39625731-39625750 | None:intergenic | 40.0% | |
| ! | ACTTATACAAGGCACCACAA+GGG | - | chr8_2:39625883-39625902 | None:intergenic | 40.0% |
| ! | GCACTAAAAGGCATGCATAA+AGG | - | chr8_2:39625906-39625925 | None:intergenic | 40.0% |
| GGTTAAAACAGGGGAGTTAA+AGG | - | chr8_2:39625928-39625947 | None:intergenic | 40.0% | |
| ATTGGTGAAATACGTAACCG+TGG | + | chr8_2:39626055-39626074 | Msa1247130:intron | 40.0% | |
| TAACCTCATGACTCAAACCA+CGG | - | chr8_2:39626075-39626094 | None:intergenic | 40.0% | |
| CTAGATCTCTTGTACTCAGT+GGG | - | chr8_2:39626142-39626161 | None:intergenic | 40.0% | |
| GATCTAGGTTACCTAGAAAC+AGG | + | chr8_2:39626155-39626174 | Msa1247130:CDS | 40.0% | |
| TCCAGATAAAACTCCACCAT+AGG | - | chr8_2:39626197-39626216 | None:intergenic | 40.0% | |
| !! | TATGGTGGAGTTTTATCTGG+AGG | + | chr8_2:39626196-39626215 | Msa1247130:CDS | 40.0% |
| TAGAATCATCCGTGCTTTCT+TGG | + | chr8_2:39626361-39626380 | Msa1247130:intron | 40.0% | |
| TTGTGCTTCTCAAAAGCCAA+TGG | - | chr8_2:39626765-39626784 | None:intergenic | 40.0% | |
| !!! | ATTGGCTTTTGAGAAGCACA+AGG | + | chr8_2:39626764-39626783 | Msa1247130:three_prime_UTR | 40.0% |
| !! | TTGGCTTTTGAGAAGCACAA+GGG | + | chr8_2:39626765-39626784 | Msa1247130:three_prime_UTR | 40.0% |
| TTCTTCTTTCAGCGACGAGA+CGG | - | chr8_2:39623508-39623527 | None:intergenic | 45.0% | |
| ! | CCTATGTTGGTTGGATTTGG+TGG | - | chr8_2:39623584-39623603 | None:intergenic | 45.0% |
| CCACCAAATCCAACCAACAT+AGG | + | chr8_2:39623581-39623600 | Msa1247130:CDS | 45.0% | |
| CATAGGGTTGTCAAAACACC+CGG | + | chr8_2:39623598-39623617 | Msa1247130:CDS | 45.0% | |
| TTGTCAAAACACCCGGTAAG+TGG | + | chr8_2:39623605-39623624 | Msa1247130:intron | 45.0% | |
| ! | GAGGTTAGTTACCACTTACC+GGG | - | chr8_2:39623619-39623638 | None:intergenic | 45.0% |
| ACAACCAAGAAGAGAGCTAG+TGG | + | chr8_2:39623744-39623763 | Msa1247130:CDS | 45.0% | |
| AATGCCCTGTTACTGGAAAG+AGG | + | chr8_2:39623772-39623791 | Msa1247130:CDS | 45.0% | |
| TGCTCGAAGATATGCTCTGA+TGG | + | chr8_2:39623885-39623904 | Msa1247130:intron | 45.0% | |
| GTTTGGATGGAGGGTTTAGA+AGG | + | chr8_2:39624170-39624189 | Msa1247130:intron | 45.0% | |
| TTGGATGGAGGGTTTAGAAG+GGG | + | chr8_2:39624172-39624191 | Msa1247130:intron | 45.0% | |
| GGAGAGAAAAAGGAAGAGAG+AGG | - | chr8_2:39624335-39624354 | None:intergenic | 45.0% | |
| TGTTTGGATCGAGGGTTTAG+GGG | - | chr8_2:39624568-39624587 | None:intergenic | 45.0% | |
| GTGTTTGGATCGAGGGTTTA+GGG | - | chr8_2:39624569-39624588 | None:intergenic | 45.0% | |
| TGTGTTTGGATCGAGGGTTT+AGG | - | chr8_2:39624570-39624589 | None:intergenic | 45.0% | |
| CGTTAATTGCGGCGAAATTG+TGG | + | chr8_2:39624862-39624881 | Msa1247130:intron | 45.0% | |
| ! | CCTTATAGTGGAAGCCATAG+CGG | - | chr8_2:39624895-39624914 | None:intergenic | 45.0% |
| CGCTATGGCTTCCACTATAA+GGG | + | chr8_2:39624893-39624912 | Msa1247130:intron | 45.0% | |
| GGCTTCCACTATAAGGGTTT+CGG | + | chr8_2:39624899-39624918 | Msa1247130:intron | 45.0% | |
| GCTTCCACTATAAGGGTTTC+GGG | + | chr8_2:39624900-39624919 | Msa1247130:intron | 45.0% | |
| CTTCCACTATAAGGGTTTCG+GGG | + | chr8_2:39624901-39624920 | Msa1247130:intron | 45.0% | |
| TATCCGCTATAGCATGTAGG+GGG | + | chr8_2:39625135-39625154 | Msa1247130:intron | 45.0% | |
| ! | ACTAGTACTGGATGTCATGG+TGG | + | chr8_2:39625290-39625309 | Msa1247130:intron | 45.0% |
| !! | ATGTCATGGTGGACTGTAGA+CGG | + | chr8_2:39625301-39625320 | Msa1247130:intron | 45.0% |
| TTGCGAAGCTGGTACAGAAT+CGG | + | chr8_2:39625362-39625381 | Msa1247130:intron | 45.0% | |
| !!! | TAAGGTTTTGCCTAGCCTTG+AGG | + | chr8_2:39625617-39625636 | Msa1247130:intron | 45.0% |
| AGTTAGCAATTGTCGCCTCA+AGG | - | chr8_2:39625635-39625654 | None:intergenic | 45.0% | |
| TGCTTCCGCATCAGTCATAT+TGG | + | chr8_2:39625806-39625825 | Msa1247130:intron | 45.0% | |
| TCCGCATCAGTCATATTGGA+TGG | + | chr8_2:39625810-39625829 | Msa1247130:intron | 45.0% | |
| GCCATCCAATATGACTGATG+CGG | - | chr8_2:39625814-39625833 | None:intergenic | 45.0% | |
| AAGGTAGTCCTAATCCCTTG+TGG | + | chr8_2:39625866-39625885 | Msa1247130:intron | 45.0% | |
| ! | GACTTATACAAGGCACCACA+AGG | - | chr8_2:39625884-39625903 | None:intergenic | 45.0% |
| !! | GGGGAGTTAAAGGCACTAAA+AGG | - | chr8_2:39625918-39625937 | None:intergenic | 45.0% |
| TAACCGTGGTTTGAGTCATG+AGG | + | chr8_2:39626069-39626088 | Msa1247130:intron | 45.0% | |
| TACTCAGTGGGTCTTAGATG+TGG | - | chr8_2:39626130-39626149 | None:intergenic | 45.0% | |
| CCTAGATCTCTTGTACTCAG+TGG | - | chr8_2:39626143-39626162 | None:intergenic | 45.0% | |
| CCACTGAGTACAAGAGATCT+AGG | + | chr8_2:39626140-39626159 | Msa1247130:CDS | 45.0% | |
| CTAGGTTACCTAGAAACAGG+AGG | + | chr8_2:39626158-39626177 | Msa1247130:CDS | 45.0% | |
| ! | TTCACAGTCCTCCTGTTTCT+AGG | - | chr8_2:39626169-39626188 | None:intergenic | 45.0% |
| !! | GCCTATGGTGGAGTTTTATC+TGG | + | chr8_2:39626193-39626212 | Msa1247130:CDS | 45.0% |
| GCTCTTCAACCAAGAAAGCA+CGG | - | chr8_2:39626373-39626392 | None:intergenic | 45.0% | |
| !! | TGGATTTGGTGGCATAGCTG+TGG | - | chr8_2:39623573-39623592 | None:intergenic | 50.0% |
| ! | TGGTCCACTAGCTCTCTTCT+TGG | - | chr8_2:39623751-39623770 | None:intergenic | 50.0% |
| GGACCAAAATGCCCTGTTAC+TGG | + | chr8_2:39623765-39623784 | Msa1247130:CDS | 50.0% | |
| ! | AAGGGTGTGTGTTTGGATGG+AGG | + | chr8_2:39624160-39624179 | Msa1247130:intron | 50.0% |
| AGGGTGTGTGTTTGGATGGA+GGG | + | chr8_2:39624161-39624180 | Msa1247130:intron | 50.0% | |
| ATGGAGGGTTTAGAAGGGGA+AGG | + | chr8_2:39624176-39624195 | Msa1247130:intron | 50.0% | |
| TGGAGGGTTTAGAAGGGGAA+GGG | + | chr8_2:39624177-39624196 | Msa1247130:intron | 50.0% | |
| TTTGGATCGAGGGTTTAGGG+GGG | - | chr8_2:39624566-39624585 | None:intergenic | 50.0% | |
| GTTTGGATCGAGGGTTTAGG+GGG | - | chr8_2:39624567-39624586 | None:intergenic | 50.0% | |
| GCGCACTGTTGCGTTAATTG+CGG | + | chr8_2:39624851-39624870 | Msa1247130:intron | 50.0% | |
| ATTGTGGGACCAAACCGCTA+TGG | + | chr8_2:39624878-39624897 | Msa1247130:intron | 50.0% | |
| TAGTGGAAGCCATAGCGGTT+TGG | - | chr8_2:39624890-39624909 | None:intergenic | 50.0% | |
| CCGCTATGGCTTCCACTATA+AGG | + | chr8_2:39624892-39624911 | Msa1247130:intron | 50.0% | |
| TCTCCCCGAAACCCTTATAG+TGG | - | chr8_2:39624907-39624926 | None:intergenic | 50.0% | |
| GCTGCTACGCGACACTATTT+GGG | + | chr8_2:39625160-39625179 | Msa1247130:intron | 50.0% | |
| ! | ACAAGGCACCACAAGGGATT+AGG | - | chr8_2:39625877-39625896 | None:intergenic | 50.0% |
| AGGACTGTGAATCGTGCCTA+TGG | + | chr8_2:39626178-39626197 | Msa1247130:CDS | 50.0% | |
| ACTGTGAATCGTGCCTATGG+TGG | + | chr8_2:39626181-39626200 | Msa1247130:CDS | 50.0% | |
| !! | CTGGAGGTGCTGTTAGAGAA+AGG | + | chr8_2:39626212-39626231 | Msa1247130:CDS | 50.0% |
| TTTCAGCGACGAGACGGAGA+AGG | - | chr8_2:39623502-39623521 | None:intergenic | 55.0% | |
| TTCAGAGGCTTACCTACCGC+AGG | + | chr8_2:39623545-39623564 | Msa1247130:CDS | 55.0% | |
| ! | TAGTAGCTGGTCGAGTTGCG+AGG | + | chr8_2:39624114-39624133 | Msa1247130:intron | 55.0% |
| AGGGTTTAGAAGGGGAAGGG+TGG | + | chr8_2:39624180-39624199 | Msa1247130:intron | 55.0% | |
| GGGTTTAGAAGGGGAAGGGT+GGG | + | chr8_2:39624181-39624200 | Msa1247130:intron | 55.0% | |
| GGTTTAGAAGGGGAAGGGTG+GGG | + | chr8_2:39624182-39624201 | Msa1247130:intron | 55.0% | |
| AGGGTTTAGGGGGGAATGGA+GGG | - | chr8_2:39624557-39624576 | None:intergenic | 55.0% | |
| ATCGAGGGTTTAGGGGGGAA+TGG | - | chr8_2:39624561-39624580 | None:intergenic | 55.0% | |
| CGACCCCCTACATGCTATAG+CGG | - | chr8_2:39625141-39625160 | None:intergenic | 55.0% | |
| CGCTGCTACGCGACACTATT+TGG | + | chr8_2:39625159-39625178 | Msa1247130:intron | 55.0% | |
| GCAATTGTCGCCTCAAGGCT+AGG | - | chr8_2:39625630-39625649 | None:intergenic | 55.0% | |
| TTAGAAGGGGAAGGGTGGGG+AGG | + | chr8_2:39624185-39624204 | Msa1247130:intron | 60.0% | |
| TTAGGGGGGAATGGAGGGGA+GGG | - | chr8_2:39624552-39624571 | None:intergenic | 60.0% | |
| TTTAGGGGGGAATGGAGGGG+AGG | - | chr8_2:39624553-39624572 | None:intergenic | 60.0% | |
| GGGTTTAGGGGGGAATGGAG+GGG | - | chr8_2:39624556-39624575 | None:intergenic | 60.0% | |
| GAGGGTTTAGGGGGGAATGG+AGG | - | chr8_2:39624558-39624577 | None:intergenic | 60.0% | |
| ATAGCTGTGGCGCCTGCGGT+AGG | - | chr8_2:39623560-39623579 | None:intergenic | 65.0% | |
| TGGCATAGCTGTGGCGCCTG+CGG | - | chr8_2:39623564-39623583 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 39623475 | 39626798 | 39623475 | ID=Msa1247130;Name=Msa1247130 |
| chr8_2 | mRNA | 39623475 | 39626798 | 39623475 | ID=Msa1247130-mRNA-1;Parent=Msa1247130;Name=Msa1247130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=66|1|1|1|1|1|4|341|120 |
| chr8_2 | exon | 39623475 | 39623619 | 39623475 | ID=Msa1247130-mRNA-1:exon:12188;Parent=Msa1247130-mRNA-1 |
| chr8_2 | exon | 39623724 | 39623803 | 39623724 | ID=Msa1247130-mRNA-1:exon:12189;Parent=Msa1247130-mRNA-1 |
| chr8_2 | exon | 39626124 | 39626233 | 39626124 | ID=Msa1247130-mRNA-1:exon:12190;Parent=Msa1247130-mRNA-1 |
| chr8_2 | exon | 39626364 | 39626798 | 39626364 | ID=Msa1247130-mRNA-1:exon:12191;Parent=Msa1247130-mRNA-1 |
| chr8_2 | five_prime_UTR | 39623475 | 39623540 | 39623475 | ID=Msa1247130-mRNA-1:five_prime_utr;Parent=Msa1247130-mRNA-1 |
| chr8_2 | CDS | 39623541 | 39623619 | 39623541 | ID=Msa1247130-mRNA-1:cds;Parent=Msa1247130-mRNA-1 |
| chr8_2 | CDS | 39623724 | 39623803 | 39623724 | ID=Msa1247130-mRNA-1:cds;Parent=Msa1247130-mRNA-1 |
| chr8_2 | CDS | 39626124 | 39626233 | 39626124 | ID=Msa1247130-mRNA-1:cds;Parent=Msa1247130-mRNA-1 |
| chr8_2 | CDS | 39626364 | 39626457 | 39626364 | ID=Msa1247130-mRNA-1:cds;Parent=Msa1247130-mRNA-1 |
| chr8_2 | three_prime_UTR | 39626458 | 39626798 | 39626458 | ID=Msa1247130-mRNA-1:three_prime_utr;Parent=Msa1247130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
