Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249360 | XP_013445926.1 | 96.552 | 522 | 12 | 3 | 1 | 517 | 1 | 521 | 0.0 | 1030 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249360 | A0A072TSZ3 | 96.552 | 522 | 12 | 3 | 1 | 517 | 1 | 521 | 0.0 | 1030 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000330 | Msa1249360 | 0.826787 | 2.240049e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249360 | MtrunA17_Chr8g0364941 | 96.552 | 522 | 12 | 3 | 1 | 517 | 1 | 521 | 0.0 | 1030 |
| Msa1249360 | MtrunA17_Chr5g0413801 | 77.641 | 407 | 81 | 4 | 22 | 424 | 18 | 418 | 0.0 | 639 |
| Msa1249360 | MtrunA17_Chr6g0451131 | 48.501 | 567 | 235 | 10 | 1 | 517 | 1 | 560 | 5.72e-170 | 491 |
| Msa1249360 | MtrunA17_Chr2g0315511 | 40.513 | 390 | 196 | 9 | 7 | 394 | 10 | 365 | 2.25e-79 | 256 |
| Msa1249360 | MtrunA17_Chr8g0359721 | 58.170 | 153 | 63 | 1 | 119 | 271 | 24 | 175 | 2.03e-52 | 176 |
| Msa1249360 | MtrunA17_Chr8g0364901 | 38.916 | 203 | 113 | 6 | 71 | 267 | 31 | 228 | 1.91e-33 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249360 | AT1G70280.2 | 65.096 | 467 | 142 | 6 | 24 | 486 | 20 | 469 | 0.0 | 561 |
| Msa1249360 | AT1G23880.1 | 60.494 | 486 | 164 | 8 | 1 | 483 | 61 | 521 | 0.0 | 557 |
| Msa1249360 | AT1G70280.1 | 66.274 | 424 | 122 | 6 | 67 | 486 | 1 | 407 | 0.0 | 521 |
| Msa1249360 | AT1G23880.2 | 62.201 | 418 | 136 | 5 | 67 | 483 | 1 | 397 | 6.80e-174 | 497 |
| Msa1249360 | AT5G14890.1 | 48.031 | 508 | 197 | 14 | 22 | 515 | 23 | 477 | 1.42e-142 | 419 |
| Msa1249360 | AT3G14860.1 | 39.695 | 393 | 190 | 10 | 6 | 394 | 24 | 373 | 8.84e-76 | 247 |
| Msa1249360 | AT3G14860.2 | 39.949 | 393 | 190 | 11 | 6 | 394 | 24 | 374 | 3.40e-75 | 246 |
| Msa1249360 | AT1G23890.1 | 48.023 | 177 | 87 | 4 | 63 | 237 | 18 | 191 | 1.45e-42 | 152 |
| Msa1249360 | AT1G23890.2 | 49.412 | 170 | 81 | 4 | 70 | 237 | 25 | 191 | 1.57e-41 | 154 |
Find 143 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTCAGAACTTGTTTC+TGG | 0.022910 | 8_2:-44000920 | Msa1249360:intron |
| CTTTCTTCTCAACATGAATT+AGG | 0.084925 | 8_2:-44001342 | Msa1249360:five_prime_UTR |
| CTTGTTGGGGCTGGTTTCTT+TGG | 0.229956 | 8_2:-43998278 | Msa1249360:CDS |
| TTCATTCTTCATATTCTCTT+TGG | 0.235810 | 8_2:-44001072 | Msa1249360:CDS |
| TGTTGCAGATACTGCAAATA+TGG | 0.266517 | 8_2:-43998805 | Msa1249360:CDS |
| TTTAAACAACAATGGTTATT+AGG | 0.273326 | 8_2:-43997056 | Msa1249360:three_prime_UTR |
| AAGCAGGAAGAAAGTTTCTT+TGG | 0.273520 | 8_2:-43997837 | Msa1249360:CDS |
| ATTAGGAAAATTAGTGATTC+AGG | 0.278000 | 8_2:-43998780 | Msa1249360:intron |
| TCCATATTCCATACCAGTTT+TGG | 0.280048 | 8_2:+44000838 | None:intergenic |
| TTTCTTCTCAACATGAATTA+GGG | 0.285229 | 8_2:-44001341 | Msa1249360:five_prime_UTR |
| AAGCCATAGAAATCTATATT+TGG | 0.290099 | 8_2:+43997083 | None:intergenic |
| TCAGTGTTTGCCTTTGAAAT+TGG | 0.298813 | 8_2:+43997718 | None:intergenic |
| GACTCAATCCAGCTTTGATT+TGG | 0.302071 | 8_2:-43997186 | Msa1249360:three_prime_UTR |
| TCACTTGCTTCTGAGATTGT+TGG | 0.308982 | 8_2:+43997694 | None:intergenic |
| CAGGAATTGCAATGCTTGTT+GGG | 0.311958 | 8_2:-43998292 | Msa1249360:CDS |
| GGATCAGCTGAAGGATATTC+TGG | 0.315805 | 8_2:-43998906 | Msa1249360:CDS |
| CAGAGGAAATCAAGCCATTA+GGG | 0.318061 | 8_2:-43998453 | Msa1249360:CDS |
| TTGCCAAATATAGATTTCTA+TGG | 0.328212 | 8_2:-43997086 | Msa1249360:three_prime_UTR |
| CAACAATTGCTGGAGGAAAA+TGG | 0.329939 | 8_2:-43998580 | Msa1249360:CDS |
| ACAGAGGAAATCAAGCCATT+AGG | 0.345553 | 8_2:-43998454 | Msa1249360:CDS |
| GAAAGTTTCTTTGGATCTCT+TGG | 0.345987 | 8_2:-43997828 | Msa1249360:CDS |
| TCATTTCAGAACTTGTTTCT+GGG | 0.363224 | 8_2:-44000919 | Msa1249360:intron |
| ATACTGCAAATATGGCAATT+AGG | 0.364589 | 8_2:-43998797 | Msa1249360:CDS |
| GTCATCACACCTGTTGAATA+TGG | 0.365763 | 8_2:-43997306 | Msa1249360:CDS |
| TCAGGGGTCACAACAATTGC+TGG | 0.373460 | 8_2:-43998590 | Msa1249360:intron |
| GCAGGAATTGCAATGCTTGT+TGG | 0.380698 | 8_2:-43998293 | Msa1249360:intron |
| CTTAAAGCTACCACCAAAAC+TGG | 0.381528 | 8_2:-44000851 | Msa1249360:intron |
| CAGTGCAGGAACAGGAGGGG+AGG | 0.381702 | 8_2:-43997341 | Msa1249360:CDS |
| GATGATTGTGCATATCGATA+TGG | 0.382744 | 8_2:-43998413 | Msa1249360:CDS |
| AGTATTGAGTATATATAGTT+AGG | 0.386080 | 8_2:-43997227 | Msa1249360:exon |
| TTCGTCAACGGTGGAGATAA+TGG | 0.396514 | 8_2:-43997784 | Msa1249360:CDS |
| TCATCAACAGTTATCCCCTT+TGG | 0.399379 | 8_2:+43998843 | None:intergenic |
| TGCTGTTGTTGATGTGGTTG+TGG | 0.400661 | 8_2:+43997474 | None:intergenic |
| GACATGTTGATGGGAGGCTC+AGG | 0.403629 | 8_2:-43998884 | Msa1249360:CDS |
| TGGTTTCTTTGGTTATATGC+TGG | 0.403960 | 8_2:-43998267 | Msa1249360:CDS |
| TGTGGTCTTCTTCTGAAAAC+AGG | 0.420773 | 8_2:+43997750 | None:intergenic |
| CTTGCAGGTGAAGTGGTTGA+TGG | 0.422939 | 8_2:+44001021 | None:intergenic |
| GCTGATCCAGCTACCAGCTT+CGG | 0.423195 | 8_2:+43998921 | None:intergenic |
| CTCAGAAGCAAGTGAATGAT+TGG | 0.423951 | 8_2:-43997686 | Msa1249360:CDS |
| TGGAGGCCTTACAGATTTCA+AGG | 0.434455 | 8_2:+43997887 | None:intergenic |
| AATGTGGAAACTGTGTTTGA+TGG | 0.436794 | 8_2:-44000688 | Msa1249360:CDS |
| TTAGCAGAAAAGAGAGGAAA+AGG | 0.438670 | 8_2:+44001421 | None:intergenic |
| GACTTTGATGTGGTTTATGT+TGG | 0.439630 | 8_2:-43998503 | Msa1249360:CDS |
| GGTAAGCTTCTTGCGAATGC+TGG | 0.443223 | 8_2:-43997807 | Msa1249360:CDS |
| TGCAGATAGCAGACCGAAGC+TGG | 0.448340 | 8_2:-43998934 | Msa1249360:intron |
| GCATTGCTGCAGCGTAGGCT+CGG | 0.449626 | 8_2:-43998245 | Msa1249360:CDS |
| TGCAAAACCTCAACAGCATA+AGG | 0.450890 | 8_2:+44000646 | None:intergenic |
| TATGGCAGTGATTTCCCTCT+TGG | 0.451443 | 8_2:-43998395 | Msa1249360:intron |
| TCCTCATTCCAAATCAAAGC+TGG | 0.453409 | 8_2:+43997178 | None:intergenic |
| ACAGAAGGCATTACTGTTAG+TGG | 0.454864 | 8_2:+43997933 | None:intergenic |
| CGGTACAATTGTAGAATCTC+AGG | 0.455028 | 8_2:-43998225 | Msa1249360:CDS |
| CAATTCATATTATGATCATC+AGG | 0.456575 | 8_2:+43997120 | None:intergenic |
| TCCAGCTTTGATTTGGAATG+AGG | 0.457197 | 8_2:-43997179 | Msa1249360:three_prime_UTR |
| AGCAGACCGAAGCTGGTAGC+TGG | 0.459795 | 8_2:-43998927 | Msa1249360:CDS |
| CACAATCATCAAAGTGGAGT+TGG | 0.462222 | 8_2:+43998426 | None:intergenic |
| ATTGCAATGCTTGTTGGGGC+TGG | 0.462265 | 8_2:-43998287 | Msa1249360:CDS |
| TCGTCAACGGTGGAGATAAT+GGG | 0.467902 | 8_2:-43997783 | Msa1249360:CDS |
| TCATATTCTGATGGAATCAA+TGG | 0.473880 | 8_2:+43997867 | None:intergenic |
| ATCACGAAACTTTCCTGTGC+TGG | 0.477387 | 8_2:+43997663 | None:intergenic |
| GAAAATTTAGCTTCTTCACT+TGG | 0.479921 | 8_2:+43998530 | None:intergenic |
| AGGAAAATGGAGCCGTGGAG+GGG | 0.481087 | 8_2:-43998567 | Msa1249360:CDS |
| GGAAAATGGAGCCGTGGAGG+GGG | 0.481323 | 8_2:-43998566 | Msa1249360:CDS |
| AACAACAATGGTTATTAGGA+AGG | 0.483807 | 8_2:-43997052 | Msa1249360:three_prime_UTR |
| GCAGGAACAGGAGGGGAGGA+AGG | 0.489615 | 8_2:-43997337 | Msa1249360:CDS |
| GGGCAGTGCAGGAACAGGAG+GGG | 0.490197 | 8_2:-43997344 | Msa1249360:CDS |
| TGCTGCTGCTGTTGTTGATG+TGG | 0.490699 | 8_2:+43997468 | None:intergenic |
| GGATATTCTGGACATGTTGA+TGG | 0.492558 | 8_2:-43998894 | Msa1249360:CDS |
| AATGAGCCTCCATATTCAAC+AGG | 0.498016 | 8_2:+43997297 | None:intergenic |
| GAGGAAAATGGAGCCGTGGA+GGG | 0.498407 | 8_2:-43998568 | Msa1249360:CDS |
| GTGGAGTTGGATCTCCCTAA+TGG | 0.498446 | 8_2:+43998439 | None:intergenic |
| ATGGGAGGCTCAGGGAGGCT+AGG | 0.499515 | 8_2:-43998875 | Msa1249360:CDS |
| AGAATATGAACCCGAAAAGC+AGG | 0.507195 | 8_2:-43997853 | Msa1249360:CDS |
| AAAAGCCCTTGAAATCTGTA+AGG | 0.509266 | 8_2:-43997893 | Msa1249360:CDS |
| TTCCTCTGTCTACAACAAGC+AGG | 0.514006 | 8_2:+43998468 | None:intergenic |
| TGCGAATGCTGGTTCGTCAA+CGG | 0.518168 | 8_2:-43997796 | Msa1249360:CDS |
| TGGGGCAGTGCAGGAACAGG+AGG | 0.528931 | 8_2:-43997346 | Msa1249360:CDS |
| AGTGAATGATTGGCCAGCAC+AGG | 0.531678 | 8_2:-43997676 | Msa1249360:CDS |
| TCTGCATCTTTCGACATGAA+AGG | 0.538618 | 8_2:+43997579 | None:intergenic |
| CAACAGTTATCCCCTTTGGA+TGG | 0.541128 | 8_2:+43998847 | None:intergenic |
| ATCTTTCGACATGAAAGGAT+AGG | 0.541256 | 8_2:+43997584 | None:intergenic |
| GGAGGAAAATGGAGCCGTGG+AGG | 0.541631 | 8_2:-43998569 | Msa1249360:CDS |
| AATTGAGCCTTATGCTGTTG+AGG | 0.544199 | 8_2:-44000653 | Msa1249360:CDS |
| TCGGTCTCGAATGAGTTACA+TGG | 0.544992 | 8_2:-43997256 | Msa1249360:CDS |
| GTGTTTGATGGAAGTAAGCT+TGG | 0.547130 | 8_2:-44000676 | Msa1249360:CDS |
| GTGTTTGCCTTTGAAATTGG+TGG | 0.549431 | 8_2:+43997721 | None:intergenic |
| AAAGTAAAGCATTCTATAGC+GGG | 0.550622 | 8_2:-43997536 | Msa1249360:CDS |
| AACAATGGTTATTAGGAAGG+TGG | 0.551782 | 8_2:-43997049 | Msa1249360:three_prime_UTR |
| CTGCAACATAAATATTTCCT+CGG | 0.552933 | 8_2:+43998820 | None:intergenic |
| GCTAGGATGAACCATCCAAA+GGG | 0.554047 | 8_2:-43998858 | Msa1249360:CDS |
| GTGAGTGAGAAGAGTGTGAA+AGG | 0.555603 | 8_2:+44001462 | None:intergenic |
| GCATTCTATAGCGGGTGGGA+TGG | 0.556786 | 8_2:-43997528 | Msa1249360:CDS |
| GATATTCTGGACATGTTGAT+GGG | 0.558030 | 8_2:-43998893 | Msa1249360:CDS |
| GCTTGTTGTTTAAACAACAA+TGG | 0.560018 | 8_2:-43997064 | Msa1249360:three_prime_UTR |
| ACAATGGTTATTAGGAAGGT+GGG | 0.562639 | 8_2:-43997048 | Msa1249360:three_prime_UTR |
| CGGTCTCGAATGAGTTACAT+GGG | 0.565662 | 8_2:-43997255 | Msa1249360:CDS |
| AGCTTTGATTTGGAATGAGG+AGG | 0.567530 | 8_2:-43997176 | Msa1249360:three_prime_UTR |
| ACATGTTGATGGGAGGCTCA+GGG | 0.573249 | 8_2:-43998883 | Msa1249360:CDS |
| GGTGCCCTTGTGTCGATAGA+CGG | 0.575046 | 8_2:+43997621 | None:intergenic |
| AAGTGTGAGGGACCGACGAT+TGG | 0.581409 | 8_2:+43997409 | None:intergenic |
| CTGGTAGCTGGATCAGCTGA+AGG | 0.583900 | 8_2:-43998915 | Msa1249360:CDS |
| GATATGCACAATCATCAAAG+TGG | 0.588148 | 8_2:+43998420 | None:intergenic |
| GGGGCAGTGCAGGAACAGGA+GGG | 0.589930 | 8_2:-43997345 | Msa1249360:CDS |
| AAATGAAGAACAAGTTGTTG+TGG | 0.591524 | 8_2:+44001133 | None:intergenic |
| TGCTGGCATTGCTGCAGCGT+AGG | 0.592474 | 8_2:-43998250 | Msa1249360:CDS |
| GGAGGCCTTACAGATTTCAA+GGG | 0.593740 | 8_2:+43997888 | None:intergenic |
| GGCTAGGATGAACCATCCAA+AGG | 0.596756 | 8_2:-43998859 | Msa1249360:CDS |
| AGAGCTACCACCAATTTCAA+AGG | 0.597932 | 8_2:-43997728 | Msa1249360:CDS |
| CTTTGCTCATAGAAAGTGTG+AGG | 0.599735 | 8_2:+43997396 | None:intergenic |
| GGACCGACGATTGGTACTGA+TGG | 0.601463 | 8_2:+43997418 | None:intergenic |
| AGGAGGATAAAATCAAGTGT+AGG | 0.603543 | 8_2:-43997159 | Msa1249360:three_prime_UTR |
| TATGTAGTTTGAGAAACAGA+AGG | 0.609655 | 8_2:+43997918 | None:intergenic |
| GTACTTACTTGCAGGTGAAG+TGG | 0.615067 | 8_2:+44001014 | None:intergenic |
| TCCCTGCTTGTTGTAGACAG+AGG | 0.617020 | 8_2:-43998470 | Msa1249360:CDS |
| GTGCTGAAGAGATTCTGTAA+AGG | 0.624023 | 8_2:+44000584 | None:intergenic |
| GGAGGGGAGGAAGGAATCTG+TGG | 0.624400 | 8_2:-43997328 | Msa1249360:CDS |
| TCCTCTGTCTACAACAAGCA+GGG | 0.626459 | 8_2:+43998469 | None:intergenic |
| AGAAAAGAGAGGAAAAGGAG+TGG | 0.626553 | 8_2:+44001426 | None:intergenic |
| GTAAAGCATTCTATAGCGGG+TGG | 0.628737 | 8_2:-43997533 | Msa1249360:CDS |
| AGGAATTGCAATGCTTGTTG+GGG | 0.633301 | 8_2:-43998291 | Msa1249360:CDS |
| GGGTTCTTAGCAGAAAAGAG+AGG | 0.635422 | 8_2:+44001415 | None:intergenic |
| CAAAGTAAAGCATTCTATAG+CGG | 0.636293 | 8_2:-43997537 | Msa1249360:CDS |
| TGAAATTGGTGGTAGCTCTG+TGG | 0.637791 | 8_2:+43997732 | None:intergenic |
| ATCACACCTGTTGAATATGG+AGG | 0.639031 | 8_2:-43997303 | Msa1249360:CDS |
| GACGGTGGTTCGTCTTCGCG+AGG | 0.641399 | 8_2:+43997639 | None:intergenic |
| AACCACCGTCTATCGACACA+AGG | 0.643306 | 8_2:-43997626 | Msa1249360:CDS |
| TCAATGATGAAATTTGAGAG+TGG | 0.644787 | 8_2:-44000715 | Msa1249360:CDS |
| TATTCTGATGGAATCAATGG+AGG | 0.648038 | 8_2:+43997870 | None:intergenic |
| TGAAGAACAAGTTGTTGTGG+AGG | 0.649901 | 8_2:+44001136 | None:intergenic |
| TAAAGCATTCTATAGCGGGT+GGG | 0.650622 | 8_2:-43997532 | Msa1249360:CDS |
| CTTCACTTGGTCCATCAACG+TGG | 0.652333 | 8_2:+43998543 | None:intergenic |
| ATTTGAGAGTGGTTACAATG+TGG | 0.666565 | 8_2:-44000704 | Msa1249360:CDS |
| ATTCTGGACATGTTGATGGG+AGG | 0.671648 | 8_2:-43998890 | Msa1249360:CDS |
| GCTGGAGGAAAATGGAGCCG+TGG | 0.674332 | 8_2:-43998572 | Msa1249360:CDS |
| TCGCCATCAGTACCAATCGT+CGG | 0.674819 | 8_2:-43997421 | Msa1249360:CDS |
| GGGGTCACAACAATTGCTGG+AGG | 0.677079 | 8_2:-43998587 | Msa1249360:CDS |
| TTTGCTCATAGAAAGTGTGA+GGG | 0.679724 | 8_2:+43997397 | None:intergenic |
| GGGATAACTGTTGATGACCG+AGG | 0.680794 | 8_2:-43998837 | Msa1249360:CDS |
| TCAACGGTGGAGATAATGGG+AGG | 0.696996 | 8_2:-43997780 | Msa1249360:CDS |
| GAATGCTGGTTCGTCAACGG+TGG | 0.709428 | 8_2:-43997793 | Msa1249360:CDS |
| ACCACCGTCTATCGACACAA+GGG | 0.731163 | 8_2:-43997625 | Msa1249360:CDS |
| GCCCTTGTGTCGATAGACGG+TGG | 0.732896 | 8_2:+43997624 | None:intergenic |
| TGTTGATGGGAGGCTCAGGG+AGG | 0.745216 | 8_2:-43998880 | Msa1249360:CDS |
| CTAGGATGAACCATCCAAAG+GGG | 0.746879 | 8_2:-43998857 | Msa1249360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATTTAAATGTTATG+TGG | + | chr8_2:43997066-43997085 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTAAATGTTATG+TGG | + | chr8_2:43997066-43997085 | None:intergenic | 10.0% |
| !!! | TGTTTTTTAGATTTATAATT+TGG | - | chr8_2:43997956-43997975 | Msa1249360:intron | 10.0% |
| !!! | AATTAATGATTATTACTTTT+TGG | - | chr8_2:43997994-43998013 | Msa1249360:intron | 10.0% |
| !! | CATTCAATATTTAATGTATT+TGG | - | chr8_2:43999008-43999027 | Msa1249360:intron | 15.0% |
| !!! | AATTAAGATATCTTTTTTTC+AGG | - | chr8_2:43999837-43999856 | Msa1249360:intron | 15.0% |
| !!! | ATTAAGATATCTTTTTTTCA+GGG | - | chr8_2:43999838-43999857 | Msa1249360:intron | 15.0% |
| !!! | TTGAATTTTTATAACACAAT+TGG | - | chr8_2:44000287-44000306 | Msa1249360:intron | 15.0% |
| !!! | TGTTATGTGGTTTTTTTTTT+GGG | + | chr8_2:43997053-43997072 | None:intergenic | 20.0% |
| !!! | ATGTTATGTGGTTTTTTTTT+TGG | + | chr8_2:43997054-43997073 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTGTTTTTGTTGA+AGG | - | chr8_2:43997694-43997713 | Msa1249360:CDS | 20.0% |
| !!! | TTTTTTGTGTTTTTGTTGAA+GGG | - | chr8_2:43997695-43997714 | Msa1249360:CDS | 20.0% |
| !! | CATTGAATACATAATGTATT+TGG | + | chr8_2:43999046-43999065 | None:intergenic | 20.0% |
| !! | ATTAAAACATCTTATAGCTT+TGG | + | chr8_2:43999172-43999191 | None:intergenic | 20.0% |
| !! | TACACAAAATTCAATCATTT+AGG | + | chr8_2:43999755-43999774 | None:intergenic | 20.0% |
| !!! | ACTTTTATCATAAAGTTTAC+TGG | + | chr8_2:43999801-43999820 | None:intergenic | 20.0% |
| !!! | TTAAGATATCTTTTTTTCAG+GGG | - | chr8_2:43999839-43999858 | Msa1249360:intron | 20.0% |
| !! | TTCAATATAAATACATCAGA+AGG | + | chr8_2:44000272-44000291 | None:intergenic | 20.0% |
| !!! | AGTATTGAGTATATATAGTT+AGG | - | chr8_2:44001218-44001237 | Msa1249360:intron | 20.0% |
| !! | TTTAAACAACAATGGTTATT+AGG | - | chr8_2:44001389-44001408 | Msa1249360:five_prime_UTR | 20.0% |
| ! | TTTCTTCTCAACATGAATTA+GGG | - | chr8_2:43997104-43997123 | Msa1249360:three_prime_UTR | 25.0% |
| ! | GAGGTGTAAAAAGTAATAAT+GGG | + | chr8_2:43997151-43997170 | None:intergenic | 25.0% |
| ! | TTCTTTCTCAACATGAATTA+GGG | - | chr8_2:43997246-43997265 | Msa1249360:CDS | 25.0% |
| ! | GAGGTGTAAAAAGTAATAAT+GGG | + | chr8_2:43997151-43997170 | None:intergenic | 25.0% |
| ! | TTCATTCTTCATATTCTCTT+TGG | - | chr8_2:43997373-43997392 | Msa1249360:CDS | 25.0% |
| !! | AGATGATAACTTTGAAGAAA+TGG | + | chr8_2:43997486-43997505 | None:intergenic | 25.0% |
| !!! | TTTTTGTGTTTTTGTTGAAG+GGG | - | chr8_2:43997696-43997715 | Msa1249360:CDS | 25.0% |
| ! | TTTGGAGATTAGATACTTAA+TGG | - | chr8_2:43998012-43998031 | Msa1249360:intron | 25.0% |
| !!! | ATACTTAATGGATTATGTTG+TGG | - | chr8_2:43998024-43998043 | Msa1249360:intron | 25.0% |
| ! | ATACAATGAAGAGATCAAAA+TGG | + | chr8_2:43998130-43998149 | None:intergenic | 25.0% |
| ! | ATCTCTTCATTGTATCATAT+TGG | - | chr8_2:43998135-43998154 | Msa1249360:intron | 25.0% |
| ! | ATTAAAGTTAGTGACTGTTT+GGG | - | chr8_2:43998226-43998245 | Msa1249360:CDS | 25.0% |
| !! | ATATGTCTGAAAACTGTTTT+CGG | - | chr8_2:43998273-43998292 | Msa1249360:CDS | 25.0% |
| !!! | TTCCCCTTTCATTTTTTAAA+AGG | - | chr8_2:43998592-43998611 | Msa1249360:intron | 25.0% |
| !!! | CTCCTTTTAAAAAATGAAAG+GGG | + | chr8_2:43998597-43998616 | None:intergenic | 25.0% |
| !!! | GCTCCTTTTAAAAAATGAAA+GGG | + | chr8_2:43998598-43998617 | None:intergenic | 25.0% |
| !!! | AGCTCCTTTTAAAAAATGAA+AGG | + | chr8_2:43998599-43998618 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr8_2:43998911-43998930 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr8_2:43998912-43998931 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATATATGTGAC+CGG | + | chr8_2:43998973-43998992 | None:intergenic | 25.0% |
| !!! | TAAGCAAGAAAGTACTTTTT+AGG | + | chr8_2:43999071-43999090 | None:intergenic | 25.0% |
| ! | ATTAGGAAAATTAGTGATTC+AGG | - | chr8_2:43999665-43999684 | Msa1249360:intron | 25.0% |
| ! | AAAACAATATATCACCAAGA+GGG | + | chr8_2:43999710-43999729 | None:intergenic | 25.0% |
| ! | AAAAACAATATATCACCAAG+AGG | + | chr8_2:43999711-43999730 | None:intergenic | 25.0% |
| ! | AATCATTTAGGTATTAAGCA+TGG | + | chr8_2:43999743-43999762 | None:intergenic | 25.0% |
| !!! | AGATTTTAGTTTTACCAAGA+GGG | + | chr8_2:44000067-44000086 | None:intergenic | 25.0% |
| !!! | AAGATTTTAGTTTTACCAAG+AGG | + | chr8_2:44000068-44000087 | None:intergenic | 25.0% |
| ! | CAATTCATATTATGATCATC+AGG | + | chr8_2:44001328-44001347 | None:intergenic | 25.0% |
| ! | TTGCCAAATATAGATTTCTA+TGG | - | chr8_2:44001359-44001378 | Msa1249360:five_prime_UTR | 25.0% |
| ! | AAGCCATAGAAATCTATATT+TGG | + | chr8_2:44001365-44001384 | None:intergenic | 25.0% |
| CTTTCTTCTCAACATGAATT+AGG | - | chr8_2:43997103-43997122 | Msa1249360:three_prime_UTR | 30.0% | |
| ! | GTGTAAAAAGTAATAATGGG+AGG | + | chr8_2:43997148-43997167 | None:intergenic | 30.0% |
| ! | GGAGGTGTAAAAAGTAATAA+TGG | + | chr8_2:43997152-43997171 | None:intergenic | 30.0% |
| AAATGAAGAACAAGTTGTTG+TGG | + | chr8_2:43997173-43997192 | None:intergenic | 30.0% | |
| CTTCTTTCTCAACATGAATT+AGG | - | chr8_2:43997245-43997264 | Msa1249360:CDS | 30.0% | |
| ! | GTGTAAAAAGTAATAATGGG+AGG | + | chr8_2:43997148-43997167 | None:intergenic | 30.0% |
| ! | GGAGGTGTAAAAAGTAATAA+TGG | + | chr8_2:43997152-43997171 | None:intergenic | 30.0% |
| AAATGAAGAACAAGTTGTTG+TGG | + | chr8_2:43997173-43997192 | None:intergenic | 30.0% | |
| ATGGAAGCAAAAGAAGAAAT+GGG | + | chr8_2:43997467-43997486 | None:intergenic | 30.0% | |
| AATGGAAGCAAAAGAAGAAA+TGG | + | chr8_2:43997468-43997487 | None:intergenic | 30.0% | |
| ! | TTCATTTCAGAACTTGTTTC+TGG | - | chr8_2:43997525-43997544 | Msa1249360:CDS | 30.0% |
| ! | TCATTTCAGAACTTGTTTCT+GGG | - | chr8_2:43997526-43997545 | Msa1249360:CDS | 30.0% |
| !!! | TGTTCCTGCTTTTTCTAAAT+GGG | - | chr8_2:43997563-43997582 | Msa1249360:CDS | 30.0% |
| TCAATGATGAAATTTGAGAG+TGG | - | chr8_2:43997730-43997749 | Msa1249360:CDS | 30.0% | |
| TTCATATACCTTGTGATCAT+TGG | - | chr8_2:43997914-43997933 | Msa1249360:CDS | 30.0% | |
| AGTGGTGCTTATATAGAATT+TGG | - | chr8_2:43998164-43998183 | Msa1249360:intron | 30.0% | |
| GTGGTGCTTATATAGAATTT+GGG | - | chr8_2:43998165-43998184 | Msa1249360:intron | 30.0% | |
| TATAGAATTTGGGTCATGTT+TGG | - | chr8_2:43998175-43998194 | Msa1249360:intron | 30.0% | |
| CATTAAAGTTAGTGACTGTT+TGG | - | chr8_2:43998225-43998244 | Msa1249360:CDS | 30.0% | |
| !!! | TCTATCTTGTTTTCAGCTTA+TGG | + | chr8_2:43998306-43998325 | None:intergenic | 30.0% |
| !! | CTTATACAGAAGCACTTATA+TGG | - | chr8_2:43998392-43998411 | Msa1249360:intron | 30.0% |
| AAGTTACTAAAGACTCTGTT+TGG | + | chr8_2:43998442-43998461 | None:intergenic | 30.0% | |
| !! | TGCTCATCATTGTTATTTCA+TGG | - | chr8_2:43998480-43998499 | Msa1249360:CDS | 30.0% |
| TTCTTATCATGCAACTTGTA+AGG | - | chr8_2:43998542-43998561 | Msa1249360:CDS | 30.0% | |
| ! | TTGTAAGGTTTTCTTTGACT+TGG | - | chr8_2:43998557-43998576 | Msa1249360:CDS | 30.0% |
| !! | TGTAAGGTTTTCTTTGACTT+GGG | - | chr8_2:43998558-43998577 | Msa1249360:CDS | 30.0% |
| !!! | CAATGTTTTTAGACGATTCA+TGG | - | chr8_2:43998625-43998644 | Msa1249360:intron | 30.0% |
| ATTAAACAGGTGAAAAACGA+CGG | + | chr8_2:43998724-43998743 | None:intergenic | 30.0% | |
| TATGTCGTAGTCAATTAAAC+AGG | + | chr8_2:43998737-43998756 | None:intergenic | 30.0% | |
| AATTGACTACGACATATATG+TGG | - | chr8_2:43998741-43998760 | Msa1249360:intron | 30.0% | |
| TCCTCTATGCATCAAATATT+TGG | - | chr8_2:43998803-43998822 | Msa1249360:CDS | 30.0% | |
| TCCAAATATTTGATGCATAG+AGG | + | chr8_2:43998807-43998826 | None:intergenic | 30.0% | |
| TTGACATAATCTTCGATACT+TGG | + | chr8_2:43998854-43998873 | None:intergenic | 30.0% | |
| TTCTTGCTTATATATGTGAC+CGG | - | chr8_2:43999081-43999100 | Msa1249360:intron | 30.0% | |
| ACTCATAACATGTTTGTAAG+CGG | + | chr8_2:43999232-43999251 | None:intergenic | 30.0% | |
| CTGCAACATAAATATTTCCT+CGG | + | chr8_2:43999628-43999647 | None:intergenic | 30.0% | |
| ATACTGCAAATATGGCAATT+AGG | - | chr8_2:43999648-43999667 | Msa1249360:intron | 30.0% | |
| ! | GAAAATTTAGCTTCTTCACT+TGG | + | chr8_2:43999918-43999937 | None:intergenic | 30.0% |
| ! | ATTTTCTGATGACTTTGATG+TGG | - | chr8_2:43999932-43999951 | Msa1249360:intron | 30.0% |
| !! | TCTATTTTCTCAAGTATTGC+TGG | - | chr8_2:44000403-44000422 | Msa1249360:intron | 30.0% |
| !! | AAACATCTTATGCTTTTTGC+AGG | - | chr8_2:44000481-44000500 | Msa1249360:intron | 30.0% |
| TATGTAGTTTGAGAAACAGA+AGG | + | chr8_2:44000530-44000549 | None:intergenic | 30.0% | |
| TCATATTCTGATGGAATCAA+TGG | + | chr8_2:44000581-44000600 | None:intergenic | 30.0% | |
| CAGAAAAAATTCAACAGTTG+CGG | - | chr8_2:44000885-44000904 | Msa1249360:CDS | 30.0% | |
| ! | CAAAGTAAAGCATTCTATAG+CGG | - | chr8_2:44000908-44000927 | Msa1249360:CDS | 30.0% |
| ! | AAAGTAAAGCATTCTATAGC+GGG | - | chr8_2:44000909-44000928 | Msa1249360:CDS | 30.0% |
| ! | ACAACCAATGAAGTAGTTTT+TGG | - | chr8_2:44001079-44001098 | Msa1249360:CDS | 30.0% |
| ! | CAACCAATGAAGTAGTTTTT+GGG | - | chr8_2:44001080-44001099 | Msa1249360:CDS | 30.0% |
| ! | AACCAATGAAGTAGTTTTTG+GGG | - | chr8_2:44001081-44001100 | Msa1249360:CDS | 30.0% |
| !! | GCTTGTTGTTTAAACAACAA+TGG | - | chr8_2:44001381-44001400 | Msa1249360:five_prime_UTR | 30.0% |
| AACAACAATGGTTATTAGGA+AGG | - | chr8_2:44001393-44001412 | Msa1249360:five_prime_UTR | 30.0% | |
| TTAGCAGAAAAGAGAGGAAA+AGG | + | chr8_2:43997027-43997046 | None:intergenic | 35.0% | |
| AAGCAAAAGAAGAAATGGGT+TGG | + | chr8_2:43997463-43997482 | None:intergenic | 35.0% | |
| !!! | CTGTTCCTGCTTTTTCTAAA+TGG | - | chr8_2:43997562-43997581 | Msa1249360:CDS | 35.0% |
| CAAACCCATTTAGAAAAAGC+AGG | + | chr8_2:43997570-43997589 | None:intergenic | 35.0% | |
| !!! | CTGCTTTTTCTAAATGGGTT+TGG | - | chr8_2:43997568-43997587 | Msa1249360:CDS | 35.0% |
| !!! | AGTTTTGGTGGTAGCTTTAA+GGG | + | chr8_2:43997595-43997614 | None:intergenic | 35.0% |
| !! | ATATTCCATACCAGTTTTGG+TGG | + | chr8_2:43997607-43997626 | None:intergenic | 35.0% |
| ACCAAAACTGGTATGGAATA+TGG | - | chr8_2:43997606-43997625 | Msa1249360:CDS | 35.0% | |
| ! | TCCATATTCCATACCAGTTT+TGG | + | chr8_2:43997610-43997629 | None:intergenic | 35.0% |
| ATTTGAGAGTGGTTACAATG+TGG | - | chr8_2:43997741-43997760 | Msa1249360:CDS | 35.0% | |
| AATGTGGAAACTGTGTTTGA+TGG | - | chr8_2:43997757-43997776 | Msa1249360:CDS | 35.0% | |
| ! | CTGTTGAGGTTTTGCATAAT+GGG | - | chr8_2:43997806-43997825 | Msa1249360:CDS | 35.0% |
| ! | TGTTGAGGTTTTGCATAATG+GGG | - | chr8_2:43997807-43997826 | Msa1249360:CDS | 35.0% |
| GAATTAAGCCAATGATCACA+AGG | + | chr8_2:43997925-43997944 | None:intergenic | 35.0% | |
| TGGATTATGTTGTGGATGAT+TGG | - | chr8_2:43998032-43998051 | Msa1249360:intron | 35.0% | |
| ATTATGTTGTGGATGATTGG+TGG | - | chr8_2:43998035-43998054 | Msa1249360:intron | 35.0% | |
| AATTTGGGTCATGTTTGGAT+TGG | - | chr8_2:43998180-43998199 | Msa1249360:intron | 35.0% | |
| AAAATGAAAGGGGAATACCA+CGG | + | chr8_2:43998587-43998606 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTCT+AGG | + | chr8_2:43999202-43999221 | None:intergenic | 35.0% | |
| ACATCTTCATCAAGGTCATA+AGG | + | chr8_2:43999353-43999372 | None:intergenic | 35.0% | |
| AATGCGATACATCTTCATCA+AGG | + | chr8_2:43999361-43999380 | None:intergenic | 35.0% | |
| !! | TGCATTTTGATATGTGTCAG+CGG | - | chr8_2:43999393-43999412 | Msa1249360:intron | 35.0% |
| GAATGAAGTATACACATGCA+AGG | + | chr8_2:43999461-43999480 | None:intergenic | 35.0% | |
| GATATTCTGGACATGTTGAT+GGG | - | chr8_2:43999552-43999571 | Msa1249360:intron | 35.0% | |
| TGTTGCAGATACTGCAAATA+TGG | - | chr8_2:43999640-43999659 | Msa1249360:intron | 35.0% | |
| AATATATCACCAAGAGGGAA+AGG | + | chr8_2:43999705-43999724 | None:intergenic | 35.0% | |
| GACTTTGATGTGGTTTATGT+TGG | - | chr8_2:43999942-43999961 | Msa1249360:intron | 35.0% | |
| GATATGCACAATCATCAAAG+TGG | + | chr8_2:44000028-44000047 | None:intergenic | 35.0% | |
| GATGATTGTGCATATCGATA+TGG | - | chr8_2:44000032-44000051 | Msa1249360:intron | 35.0% | |
| TGGTTTCTTTGGTTATATGC+TGG | - | chr8_2:44000178-44000197 | Msa1249360:intron | 35.0% | |
| AAAAGCCCTTGAAATCTGTA+AGG | - | chr8_2:44000552-44000571 | Msa1249360:intron | 35.0% | |
| TATTCTGATGGAATCAATGG+AGG | + | chr8_2:44000578-44000597 | None:intergenic | 35.0% | |
| !!! | TTTTCGGGTTCATATTCTGA+TGG | + | chr8_2:44000590-44000609 | None:intergenic | 35.0% |
| !! | AAACTTTCTTCCTGCTTTTC+GGG | + | chr8_2:44000605-44000624 | None:intergenic | 35.0% |
| !! | GAAACTTTCTTCCTGCTTTT+CGG | + | chr8_2:44000606-44000625 | None:intergenic | 35.0% |
| AAGCAGGAAGAAAGTTTCTT+TGG | - | chr8_2:44000608-44000627 | Msa1249360:CDS | 35.0% | |
| GAAAGTTTCTTTGGATCTCT+TGG | - | chr8_2:44000617-44000636 | Msa1249360:CDS | 35.0% | |
| !! | TCAGTGTTTGCCTTTGAAAT+TGG | + | chr8_2:44000730-44000749 | None:intergenic | 35.0% |
| !! | TGAAAGGATAGGTTTTTCGA+GGG | + | chr8_2:44000853-44000872 | None:intergenic | 35.0% |
| ! | ATGAAAGGATAGGTTTTTCG+AGG | + | chr8_2:44000854-44000873 | None:intergenic | 35.0% |
| ATCTTTCGACATGAAAGGAT+AGG | + | chr8_2:44000864-44000883 | None:intergenic | 35.0% | |
| ! | TTTGCTCATAGAAAGTGTGA+GGG | + | chr8_2:44001051-44001070 | None:intergenic | 35.0% |
| AGGAGGATAAAATCAAGTGT+AGG | - | chr8_2:44001286-44001305 | Msa1249360:intron | 35.0% | |
| AACAATGGTTATTAGGAAGG+TGG | - | chr8_2:44001396-44001415 | Msa1249360:five_prime_UTR | 35.0% | |
| ACAATGGTTATTAGGAAGGT+GGG | - | chr8_2:44001397-44001416 | Msa1249360:five_prime_UTR | 35.0% | |
| AGAAAAGAGAGGAAAAGGAG+TGG | + | chr8_2:43997022-43997041 | None:intergenic | 40.0% | |
| TGAAGAACAAGTTGTTGTGG+AGG | + | chr8_2:43997170-43997189 | None:intergenic | 40.0% | |
| TGAAGAACAAGTTGTTGTGG+AGG | + | chr8_2:43997170-43997189 | None:intergenic | 40.0% | |
| !! | CAAAAGAAGAAATGGGTTGG+TGG | + | chr8_2:43997460-43997479 | None:intergenic | 40.0% |
| AGAAAAAGCAGGAACAGCAT+TGG | + | chr8_2:43997559-43997578 | None:intergenic | 40.0% | |
| !! | CAGTTTTGGTGGTAGCTTTA+AGG | + | chr8_2:43997596-43997615 | None:intergenic | 40.0% |
| CTTAAAGCTACCACCAAAAC+TGG | - | chr8_2:43997594-43997613 | Msa1249360:CDS | 40.0% | |
| GTGTTTGATGGAAGTAAGCT+TGG | - | chr8_2:43997769-43997788 | Msa1249360:CDS | 40.0% | |
| ! | AATTGAGCCTTATGCTGTTG+AGG | - | chr8_2:43997792-43997811 | Msa1249360:CDS | 40.0% |
| TGCAAAACCTCAACAGCATA+AGG | + | chr8_2:43997802-43997821 | None:intergenic | 40.0% | |
| ! | GCTGTTGAGGTTTTGCATAA+TGG | - | chr8_2:43997805-43997824 | Msa1249360:CDS | 40.0% |
| GTGCTGAAGAGATTCTGTAA+AGG | + | chr8_2:43997864-43997883 | None:intergenic | 40.0% | |
| !! | GGGATGCTTTTTACCGAATT+TGG | - | chr8_2:43998060-43998079 | Msa1249360:intron | 40.0% |
| !!! | AATGCCGATGAGCTAGTTTT+GGG | - | chr8_2:43998083-43998102 | Msa1249360:intron | 40.0% |
| ! | GTATCATATTGGCTAGTCAG+TGG | - | chr8_2:43998146-43998165 | Msa1249360:intron | 40.0% |
| AAGTTCATTACCGTCTGAGA+TGG | - | chr8_2:43998678-43998697 | Msa1249360:intron | 40.0% | |
| CTCATGATTATGACCCTGTT+TGG | - | chr8_2:43998895-43998914 | Msa1249360:CDS | 40.0% | |
| CACTTATGATATACTCCCTC+CGG | - | chr8_2:43998951-43998970 | Msa1249360:intron | 40.0% | |
| TGCTTATATATGTGACCGGA+GGG | + | chr8_2:43999085-43999104 | None:intergenic | 40.0% | |
| TTGCTTATATATGTGACCGG+AGG | + | chr8_2:43999084-43999103 | None:intergenic | 40.0% | |
| TTGCTTATATATGTGACCGG+AGG | - | chr8_2:43999084-43999103 | Msa1249360:intron | 40.0% | |
| TGCTTATATATGTGACCGGA+GGG | - | chr8_2:43999085-43999104 | Msa1249360:intron | 40.0% | |
| AACCTATCCTAGAGAGCTTA+TGG | - | chr8_2:43999192-43999211 | Msa1249360:intron | 40.0% | |
| !! | TTCCATAAGCTCTCTAGGAT+AGG | + | chr8_2:43999197-43999216 | None:intergenic | 40.0% |
| !! | GCATTTTGATATGTGTCAGC+GGG | - | chr8_2:43999394-43999413 | Msa1249360:intron | 40.0% |
| !! | CATTTTGATATGTGTCAGCG+GGG | - | chr8_2:43999395-43999414 | Msa1249360:intron | 40.0% |
| !! | ATTTTGATATGTGTCAGCGG+GGG | - | chr8_2:43999396-43999415 | Msa1249360:intron | 40.0% |
| TGCAAGGACATAAACTGTCA+CGG | + | chr8_2:43999445-43999464 | None:intergenic | 40.0% | |
| GGATATTCTGGACATGTTGA+TGG | - | chr8_2:43999551-43999570 | Msa1249360:intron | 40.0% | |
| TCATCAACAGTTATCCCCTT+TGG | + | chr8_2:43999605-43999624 | None:intergenic | 40.0% | |
| TTTCTTCATCCTTTCCCTCT+TGG | - | chr8_2:43999693-43999712 | Msa1249360:intron | 40.0% | |
| CAACAATTGCTGGAGGAAAA+TGG | - | chr8_2:43999865-43999884 | Msa1249360:intron | 40.0% | |
| ACAGAGGAAATCAAGCCATT+AGG | - | chr8_2:43999991-44000010 | Msa1249360:intron | 40.0% | |
| CAGAGGAAATCAAGCCATTA+GGG | - | chr8_2:43999992-44000011 | Msa1249360:intron | 40.0% | |
| CACAATCATCAAAGTGGAGT+TGG | + | chr8_2:44000022-44000041 | None:intergenic | 40.0% | |
| GATTCATTTCCTTCATACGC+AGG | - | chr8_2:44000134-44000153 | Msa1249360:intron | 40.0% | |
| ATTGCAATTCCTGCGTATGA+AGG | + | chr8_2:44000146-44000165 | None:intergenic | 40.0% | |
| CAGGAATTGCAATGCTTGTT+GGG | - | chr8_2:44000153-44000172 | Msa1249360:intron | 40.0% | |
| ! | AGGAATTGCAATGCTTGTTG+GGG | - | chr8_2:44000154-44000173 | Msa1249360:intron | 40.0% |
| CGGTACAATTGTAGAATCTC+AGG | - | chr8_2:44000220-44000239 | Msa1249360:intron | 40.0% | |
| TGTCAAACACCGATAGATGT+CGG | + | chr8_2:44000358-44000377 | None:intergenic | 40.0% | |
| ! | TTCTCAAGTATTGCTGGTGT+TGG | - | chr8_2:44000409-44000428 | Msa1249360:intron | 40.0% |
| !! | ACTTTGATAAGCACTGACAC+AGG | + | chr8_2:44000457-44000476 | None:intergenic | 40.0% |
| !! | CTTATGCTTTTTGCAGGTTC+AGG | - | chr8_2:44000487-44000506 | Msa1249360:intron | 40.0% |
| !! | ACAGAAGGCATTACTGTTAG+TGG | + | chr8_2:44000515-44000534 | None:intergenic | 40.0% |
| AGAATATGAACCCGAAAAGC+AGG | - | chr8_2:44000592-44000611 | Msa1249360:CDS | 40.0% | |
| ! | TGTGGTCTTCTTCTGAAAAC+AGG | + | chr8_2:44000698-44000717 | None:intergenic | 40.0% |
| AGAGCTACCACCAATTTCAA+AGG | - | chr8_2:44000717-44000736 | Msa1249360:CDS | 40.0% | |
| !! | GTGTTTGCCTTTGAAATTGG+TGG | + | chr8_2:44000727-44000746 | None:intergenic | 40.0% |
| !! | TCACTTGCTTCTGAGATTGT+TGG | + | chr8_2:44000754-44000773 | None:intergenic | 40.0% |
| CTCAGAAGCAAGTGAATGAT+TGG | - | chr8_2:44000759-44000778 | Msa1249360:intron | 40.0% | |
| !!! | GAAAGGATAGGTTTTTCGAG+GGG | + | chr8_2:44000852-44000871 | None:intergenic | 40.0% |
| TCTGCATCTTTCGACATGAA+AGG | + | chr8_2:44000869-44000888 | None:intergenic | 40.0% | |
| !! | TAAAGCATTCTATAGCGGGT+GGG | - | chr8_2:44000913-44000932 | Msa1249360:CDS | 40.0% |
| ! | GGTTGTTGTTGTTGTTGTTG+CGG | + | chr8_2:44000953-44000972 | None:intergenic | 40.0% |
| ! | CTTTGCTCATAGAAAGTGTG+AGG | + | chr8_2:44001052-44001071 | None:intergenic | 40.0% |
| TGCCCCAAAAACTACTTCAT+TGG | + | chr8_2:44001086-44001105 | None:intergenic | 40.0% | |
| GTCATCACACCTGTTGAATA+TGG | - | chr8_2:44001139-44001158 | Msa1249360:five_prime_UTR | 40.0% | |
| ATCACACCTGTTGAATATGG+AGG | - | chr8_2:44001142-44001161 | Msa1249360:five_prime_UTR | 40.0% | |
| AATGAGCCTCCATATTCAAC+AGG | + | chr8_2:44001151-44001170 | None:intergenic | 40.0% | |
| ! | TGTACGAACATCGCGATTTT+CGG | - | chr8_2:44001170-44001189 | Msa1249360:five_prime_UTR | 40.0% |
| ! | GACTCAATCCAGCTTTGATT+TGG | - | chr8_2:44001259-44001278 | Msa1249360:intron | 40.0% |
| !! | TCCAGCTTTGATTTGGAATG+AGG | - | chr8_2:44001266-44001285 | Msa1249360:intron | 40.0% |
| TCCTCATTCCAAATCAAAGC+TGG | + | chr8_2:44001270-44001289 | None:intergenic | 40.0% | |
| !! | AGCTTTGATTTGGAATGAGG+AGG | - | chr8_2:44001269-44001288 | Msa1249360:intron | 40.0% |
| ! | GTGAGTGAGAAGAGTGTGAA+AGG | + | chr8_2:43996986-43997005 | None:intergenic | 45.0% |
| GGGTTCTTAGCAGAAAAGAG+AGG | + | chr8_2:43997033-43997052 | None:intergenic | 45.0% | |
| GTACTTACTTGCAGGTGAAG+TGG | + | chr8_2:43997434-43997453 | None:intergenic | 45.0% | |
| AGCTACCACCAAAACTGGTA+TGG | - | chr8_2:43997599-43997618 | Msa1249360:CDS | 45.0% | |
| ! | TGTTGTGGATGATTGGTGGT+TGG | - | chr8_2:43998039-43998058 | Msa1249360:intron | 45.0% |
| ! | GTTGTGGATGATTGGTGGTT+GGG | - | chr8_2:43998040-43998059 | Msa1249360:intron | 45.0% |
| GCTCATCGGCATTCCAAATT+CGG | + | chr8_2:43998076-43998095 | None:intergenic | 45.0% | |
| !! | GAATGCCGATGAGCTAGTTT+TGG | - | chr8_2:43998082-43998101 | Msa1249360:intron | 45.0% |
| CACACCCAAAACTAGCTCAT+CGG | + | chr8_2:43998090-43998109 | None:intergenic | 45.0% | |
| AACAGGTGAAAAACGACGGT+AGG | + | chr8_2:43998720-43998739 | None:intergenic | 45.0% | |
| ATGCATAGAGGAGTCGAACT+GGG | + | chr8_2:43998795-43998814 | None:intergenic | 45.0% | |
| ACATAAGCACTTACTCCCTC+CGG | + | chr8_2:43999103-43999122 | None:intergenic | 45.0% | |
| ! | TTTTGATATGTGTCAGCGGG+GGG | - | chr8_2:43999397-43999416 | Msa1249360:intron | 45.0% |
| GGATCAGCTGAAGGATATTC+TGG | - | chr8_2:43999539-43999558 | Msa1249360:intron | 45.0% | |
| ! | ATTCTGGACATGTTGATGGG+AGG | - | chr8_2:43999555-43999574 | Msa1249360:intron | 45.0% |
| GCTAGGATGAACCATCCAAA+GGG | - | chr8_2:43999587-43999606 | Msa1249360:intron | 45.0% | |
| CTAGGATGAACCATCCAAAG+GGG | - | chr8_2:43999588-43999607 | Msa1249360:intron | 45.0% | |
| CAACAGTTATCCCCTTTGGA+TGG | + | chr8_2:43999601-43999620 | None:intergenic | 45.0% | |
| TCCTCTGTCTACAACAAGCA+GGG | + | chr8_2:43999979-43999998 | None:intergenic | 45.0% | |
| TTCCTCTGTCTACAACAAGC+AGG | + | chr8_2:43999980-43999999 | None:intergenic | 45.0% | |
| TATGGCAGTGATTTCCCTCT+TGG | - | chr8_2:44000050-44000069 | Msa1249360:intron | 45.0% | |
| GCAGGAATTGCAATGCTTGT+TGG | - | chr8_2:44000152-44000171 | Msa1249360:intron | 45.0% | |
| GGAGGCCTTACAGATTTCAA+GGG | + | chr8_2:44000560-44000579 | None:intergenic | 45.0% | |
| TGGAGGCCTTACAGATTTCA+AGG | + | chr8_2:44000561-44000580 | None:intergenic | 45.0% | |
| TTCGTCAACGGTGGAGATAA+TGG | - | chr8_2:44000661-44000680 | Msa1249360:CDS | 45.0% | |
| TCGTCAACGGTGGAGATAAT+GGG | - | chr8_2:44000662-44000681 | Msa1249360:CDS | 45.0% | |
| ! | TGAAATTGGTGGTAGCTCTG+TGG | + | chr8_2:44000716-44000735 | None:intergenic | 45.0% |
| ATCACGAAACTTTCCTGTGC+TGG | + | chr8_2:44000785-44000804 | None:intergenic | 45.0% | |
| ! | GTAAAGCATTCTATAGCGGG+TGG | - | chr8_2:44000912-44000931 | Msa1249360:CDS | 45.0% |
| TGCTGTTGTTGATGTGGTTG+TGG | + | chr8_2:44000974-44000993 | None:intergenic | 45.0% | |
| TCGGTCTCGAATGAGTTACA+TGG | - | chr8_2:44001189-44001208 | Msa1249360:intron | 45.0% | |
| CGGTCTCGAATGAGTTACAT+GGG | - | chr8_2:44001190-44001209 | Msa1249360:intron | 45.0% | |
| !!! | AATAAAACAATTTTAAAAAA+TGG | + | chr8_2:43997656-43997675 | None:intergenic | 5.0% |
| CTTGCAGGTGAAGTGGTTGA+TGG | + | chr8_2:43997427-43997446 | None:intergenic | 50.0% | |
| GGTGGTGAGTACTTACTTGC+AGG | + | chr8_2:43997442-43997461 | None:intergenic | 50.0% | |
| !!! | CGATGAGCTAGTTTTGGGTG+TGG | - | chr8_2:43998088-43998107 | Msa1249360:intron | 50.0% |
| AGACGATTCATGGCTGCTCA+TGG | - | chr8_2:43998635-43998654 | Msa1249360:intron | 50.0% | |
| TAGTAGGCTGCCATCTCAGA+CGG | + | chr8_2:43998691-43998710 | None:intergenic | 50.0% | |
| ! | TCTGAGATGGCAGCCTACTA+TGG | - | chr8_2:43998691-43998710 | Msa1249360:intron | 50.0% |
| GGAGTCGAACTGGGAAAAAG+TGG | + | chr8_2:43998786-43998805 | None:intergenic | 50.0% | |
| GATGCATAGAGGAGTCGAAC+TGG | + | chr8_2:43998796-43998815 | None:intergenic | 50.0% | |
| ! | ACATGTTGATGGGAGGCTCA+GGG | - | chr8_2:43999562-43999581 | Msa1249360:intron | 50.0% |
| GGCTAGGATGAACCATCCAA+AGG | - | chr8_2:43999586-43999605 | Msa1249360:intron | 50.0% | |
| !! | GGGATAACTGTTGATGACCG+AGG | - | chr8_2:43999608-43999627 | Msa1249360:intron | 50.0% |
| TCAGGGGTCACAACAATTGC+TGG | - | chr8_2:43999855-43999874 | Msa1249360:intron | 50.0% | |
| CTTCACTTGGTCCATCAACG+TGG | + | chr8_2:43999905-43999924 | None:intergenic | 50.0% | |
| !! | TCCCTGCTTGTTGTAGACAG+AGG | - | chr8_2:43999975-43999994 | Msa1249360:intron | 50.0% |
| GTGGAGTTGGATCTCCCTAA+TGG | + | chr8_2:44000009-44000028 | None:intergenic | 50.0% | |
| ! | ATTGCAATGCTTGTTGGGGC+TGG | - | chr8_2:44000158-44000177 | Msa1249360:intron | 50.0% |
| !! | CTTGTTGGGGCTGGTTTCTT+TGG | - | chr8_2:44000167-44000186 | Msa1249360:intron | 50.0% |
| TCTGTTGTTGAAGACGTGCC+CGG | - | chr8_2:44000329-44000348 | Msa1249360:intron | 50.0% | |
| !! | ATAAGCACTGACACAGGCAC+CGG | + | chr8_2:44000451-44000470 | None:intergenic | 50.0% |
| GGTAAGCTTCTTGCGAATGC+TGG | - | chr8_2:44000638-44000657 | Msa1249360:CDS | 50.0% | |
| !! | TGCGAATGCTGGTTCGTCAA+CGG | - | chr8_2:44000649-44000668 | Msa1249360:CDS | 50.0% |
| !! | TCAACGGTGGAGATAATGGG+AGG | - | chr8_2:44000665-44000684 | Msa1249360:CDS | 50.0% |
| ! | AGTGAATGATTGGCCAGCAC+AGG | - | chr8_2:44000769-44000788 | Msa1249360:intron | 50.0% |
| AACCACCGTCTATCGACACA+AGG | - | chr8_2:44000819-44000838 | Msa1249360:intron | 50.0% | |
| ACCACCGTCTATCGACACAA+GGG | - | chr8_2:44000820-44000839 | Msa1249360:intron | 50.0% | |
| !!! | GGATAGGTTTTTCGAGGGGT+TGG | + | chr8_2:44000848-44000867 | None:intergenic | 50.0% |
| TGCTGCTGCTGTTGTTGATG+TGG | + | chr8_2:44000980-44000999 | None:intergenic | 50.0% | |
| TCGCCATCAGTACCAATCGT+CGG | - | chr8_2:44001024-44001043 | Msa1249360:CDS | 50.0% | |
| !!! | AGTAGTTTTTGGGGCAGTGC+AGG | - | chr8_2:44001090-44001109 | Msa1249360:CDS | 50.0% |
| !! | TTCTTTGACTTGGGTCGCCG+TGG | - | chr8_2:43998567-43998586 | Msa1249360:CDS | 55.0% |
| TGCAGATAGCAGACCGAAGC+TGG | - | chr8_2:43999511-43999530 | Msa1249360:intron | 55.0% | |
| GCTGATCCAGCTACCAGCTT+CGG | + | chr8_2:43999527-43999546 | None:intergenic | 55.0% | |
| CTGGTAGCTGGATCAGCTGA+AGG | - | chr8_2:43999530-43999549 | Msa1249360:intron | 55.0% | |
| ! | GACATGTTGATGGGAGGCTC+AGG | - | chr8_2:43999561-43999580 | Msa1249360:intron | 55.0% |
| GGGGTCACAACAATTGCTGG+AGG | - | chr8_2:43999858-43999877 | Msa1249360:intron | 55.0% | |
| GAGGAAAATGGAGCCGTGGA+GGG | - | chr8_2:43999877-43999896 | Msa1249360:intron | 55.0% | |
| AGGAAAATGGAGCCGTGGAG+GGG | - | chr8_2:43999878-43999897 | Msa1249360:intron | 55.0% | |
| ACCGATAGATGTCGGACACC+GGG | + | chr8_2:44000350-44000369 | None:intergenic | 55.0% | |
| CACCGATAGATGTCGGACAC+CGG | + | chr8_2:44000351-44000370 | None:intergenic | 55.0% | |
| !! | TAAGCACTGACACAGGCACC+GGG | + | chr8_2:44000450-44000469 | None:intergenic | 55.0% |
| !! | GAATGCTGGTTCGTCAACGG+TGG | - | chr8_2:44000652-44000671 | Msa1249360:CDS | 55.0% |
| ! | GGTGCCCTTGTGTCGATAGA+CGG | + | chr8_2:44000827-44000846 | None:intergenic | 55.0% |
| !! | GCATTCTATAGCGGGTGGGA+TGG | - | chr8_2:44000917-44000936 | Msa1249360:intron | 55.0% |
| ! | GGACCGACGATTGGTACTGA+TGG | + | chr8_2:44001030-44001049 | None:intergenic | 55.0% |
| AAGTGTGAGGGACCGACGAT+TGG | + | chr8_2:44001039-44001058 | None:intergenic | 55.0% | |
| !!! | TTTTGGGGCAGTGCAGGAAC+AGG | - | chr8_2:44001096-44001115 | Msa1249360:CDS | 55.0% |
| CGACGGTAGGCTGCCATAGT+AGG | + | chr8_2:43998707-43998726 | None:intergenic | 60.0% | |
| AGCAGACCGAAGCTGGTAGC+TGG | - | chr8_2:43999518-43999537 | Msa1249360:intron | 60.0% | |
| ! | TGTTGATGGGAGGCTCAGGG+AGG | - | chr8_2:43999565-43999584 | Msa1249360:intron | 60.0% |
| GCTGGAGGAAAATGGAGCCG+TGG | - | chr8_2:43999873-43999892 | Msa1249360:intron | 60.0% | |
| GGAGGAAAATGGAGCCGTGG+AGG | - | chr8_2:43999876-43999895 | Msa1249360:intron | 60.0% | |
| GGAAAATGGAGCCGTGGAGG+GGG | - | chr8_2:43999879-43999898 | Msa1249360:intron | 60.0% | |
| TGCTGGCATTGCTGCAGCGT+AGG | - | chr8_2:44000195-44000214 | Msa1249360:intron | 60.0% | |
| GCATTGCTGCAGCGTAGGCT+CGG | - | chr8_2:44000200-44000219 | Msa1249360:intron | 60.0% | |
| GCCCGGTGTCCGACATCTAT+CGG | - | chr8_2:44000346-44000365 | Msa1249360:intron | 60.0% | |
| TGGCGTGTCAGTGTCATGCC+CGG | - | chr8_2:44000429-44000448 | Msa1249360:intron | 60.0% | |
| ! | GCCCTTGTGTCGATAGACGG+TGG | + | chr8_2:44000824-44000843 | None:intergenic | 60.0% |
| GGAGGGGAGGAAGGAATCTG+TGG | - | chr8_2:44001117-44001136 | Msa1249360:exon | 60.0% | |
| ATGGGAGGCTCAGGGAGGCT+AGG | - | chr8_2:43999570-43999589 | Msa1249360:intron | 65.0% | |
| CATCAACGTGGCCCCCTCCA+CGG | + | chr8_2:43999893-43999912 | None:intergenic | 65.0% | |
| GACGGTGGTTCGTCTTCGCG+AGG | + | chr8_2:44000809-44000828 | None:intergenic | 65.0% | |
| TGGGGCAGTGCAGGAACAGG+AGG | - | chr8_2:44001099-44001118 | Msa1249360:CDS | 65.0% | |
| GGGGCAGTGCAGGAACAGGA+GGG | - | chr8_2:44001100-44001119 | Msa1249360:CDS | 65.0% | |
| GGGCAGTGCAGGAACAGGAG+GGG | - | chr8_2:44001101-44001120 | Msa1249360:CDS | 65.0% | |
| CAGTGCAGGAACAGGAGGGG+AGG | - | chr8_2:44001104-44001123 | Msa1249360:exon | 65.0% | |
| GCAGGAACAGGAGGGGAGGA+AGG | - | chr8_2:44001108-44001127 | Msa1249360:exon | 65.0% | |
| CGTGGAGGGGGCCACGTTGA+TGG | - | chr8_2:43999891-43999910 | Msa1249360:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 43996974 | 44001493 | 43996974 | ID=Msa1249360;Name=Msa1249360 |
| chr8_2 | mRNA | 43996974 | 44001493 | 43996974 | ID=Msa1249360-mRNA-1;Parent=Msa1249360;Name=Msa1249360-mRNA-1;_AED=0.11;_eAED=0.11;_QI=237|1|1|1|0.85|0.75|8|268|517 |
| chr8_2 | exon | 43996974 | 43997964 | 43996974 | ID=Msa1249360-mRNA-1:exon:13399;Parent=Msa1249360-mRNA-1 |
| chr8_2 | exon | 43998223 | 43998311 | 43998223 | ID=Msa1249360-mRNA-1:exon:13398;Parent=Msa1249360-mRNA-1 |
| chr8_2 | exon | 43998396 | 43998608 | 43998396 | ID=Msa1249360-mRNA-1:exon:13397;Parent=Msa1249360-mRNA-1 |
| chr8_2 | exon | 43998781 | 43998951 | 43998781 | ID=Msa1249360-mRNA-1:exon:13396;Parent=Msa1249360-mRNA-1 |
| chr8_2 | exon | 44000575 | 44000751 | 44000575 | ID=Msa1249360-mRNA-1:exon:13395;Parent=Msa1249360-mRNA-1 |
| chr8_2 | exon | 44000852 | 44000932 | 44000852 | ID=Msa1249360-mRNA-1:exon:13394;Parent=Msa1249360-mRNA-1 |
| chr8_2 | exon | 44001022 | 44001190 | 44001022 | ID=Msa1249360-mRNA-1:exon:13393;Parent=Msa1249360-mRNA-1 |
| chr8_2 | exon | 44001326 | 44001493 | 44001326 | ID=Msa1249360-mRNA-1:exon:13392;Parent=Msa1249360-mRNA-1 |
| chr8_2 | five_prime_UTR | 44001326 | 44001493 | 44001326 | ID=Msa1249360-mRNA-1:five_prime_utr;Parent=Msa1249360-mRNA-1 |
| chr8_2 | five_prime_UTR | 44001122 | 44001190 | 44001122 | ID=Msa1249360-mRNA-1:five_prime_utr;Parent=Msa1249360-mRNA-1 |
| chr8_2 | CDS | 44001022 | 44001121 | 44001022 | ID=Msa1249360-mRNA-1:cds;Parent=Msa1249360-mRNA-1 |
| chr8_2 | CDS | 44000852 | 44000932 | 44000852 | ID=Msa1249360-mRNA-1:cds;Parent=Msa1249360-mRNA-1 |
| chr8_2 | CDS | 44000575 | 44000751 | 44000575 | ID=Msa1249360-mRNA-1:cds;Parent=Msa1249360-mRNA-1 |
| chr8_2 | CDS | 43998781 | 43998951 | 43998781 | ID=Msa1249360-mRNA-1:cds;Parent=Msa1249360-mRNA-1 |
| chr8_2 | CDS | 43998396 | 43998608 | 43998396 | ID=Msa1249360-mRNA-1:cds;Parent=Msa1249360-mRNA-1 |
| chr8_2 | CDS | 43998223 | 43998311 | 43998223 | ID=Msa1249360-mRNA-1:cds;Parent=Msa1249360-mRNA-1 |
| chr8_2 | CDS | 43997242 | 43997964 | 43997242 | ID=Msa1249360-mRNA-1:cds;Parent=Msa1249360-mRNA-1 |
| chr8_2 | three_prime_UTR | 43996974 | 43997241 | 43996974 | ID=Msa1249360-mRNA-1:three_prime_utr;Parent=Msa1249360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
