AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254970 MtrunA17_Chr8g0372871 84.099 283 18 1 1 283 1 256 4.52e-153 427
Msa1254970 MtrunA17_Chr8g0372881 73.477 279 72 1 5 283 10 286 7.21e-150 421
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254970 AT5G66450.2 51.316 228 103 4 62 283 1 226 2.32e-68 212
Msa1254970 AT5G66450.4 50.870 230 106 3 59 283 58 285 5.11e-68 213
Msa1254970 AT5G66450.1 50.870 230 106 3 59 283 58 285 5.11e-68 213
Msa1254970 AT3G50920.2 51.142 219 105 2 67 283 9 227 6.22e-64 201
Msa1254970 AT3G50920.1 51.142 219 105 2 67 283 60 278 2.64e-63 201
Msa1254970 AT5G66450.5 51.872 187 83 3 59 240 58 242 1.48e-52 172
Msa1254970 AT5G66450.3 52.717 184 80 3 59 237 58 239 1.12e-51 172

Find 107 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATTTCAATGATAATTTA+TGG 0.107697 8_2:-53351813 None:intergenic
GGTCAGAATCGTTGTTATTT+TGG 0.139850 8_2:+53356186 Msa1254970:CDS
GGATATTGATATACGAAATT+TGG 0.149391 8_2:-53352097 None:intergenic
TTTGGCATTTGGTTCTTATT+TGG 0.171210 8_2:+53355434 Msa1254970:CDS
CACAAAAGTTGTTAAGAAAA+TGG 0.193372 8_2:-53351690 None:intergenic
GAATCAAAATAATATGTATC+TGG 0.235073 8_2:-53351529 None:intergenic
CAATTCTTGAATAAACTTCT+TGG 0.251916 8_2:+53350383 Msa1254970:five_prime_UTR
GGTTTGTTCCTTTCAATCTC+TGG 0.253264 8_2:+53353033 Msa1254970:CDS
ATTATAGACTTGCGTATATT+AGG 0.275062 8_2:+53351570 Msa1254970:five_prime_UTR
AGTTGCTTGGCTTTGGCATT+TGG 0.278816 8_2:+53355423 Msa1254970:CDS
CTTTCTCTATCTTGTGGTAT+TGG 0.289727 8_2:+53356119 Msa1254970:CDS
CTTTGTCGTATTGTACTGAT+TGG 0.297326 8_2:+53351358 Msa1254970:five_prime_UTR
GGTGGACTCTCTTGGGAACT+TGG 0.300510 8_2:+53351162 Msa1254970:intron
TGGACTCTCTTGGGAACTTG+GGG 0.316901 8_2:+53351164 Msa1254970:five_prime_UTR
CTTCAAGATCATTCACTTGT+GGG 0.321620 8_2:+53353012 Msa1254970:CDS
CCATTTCAATGATAATTTAT+GGG 0.326429 8_2:-53351812 None:intergenic
CATAGAGGGTAATAATTGTT+TGG 0.333575 8_2:-53351465 None:intergenic
GCAGAAGCCTTATGGTTTGC+AGG 0.334010 8_2:+53354433 Msa1254970:CDS
TACCAGCAGTTGCTTGGCTT+TGG 0.335193 8_2:+53355416 Msa1254970:CDS
CAATTCAAGCGTTGTTGTCT+TGG 0.337886 8_2:+53351969 Msa1254970:five_prime_UTR
GTGGACTCTCTTGGGAACTT+GGG 0.342152 8_2:+53351163 Msa1254970:five_prime_UTR
CCCATAAATTATCATTGAAA+TGG 0.356125 8_2:+53351812 Msa1254970:five_prime_UTR
GTGAGACACGAACCAGGTTT+TGG 0.371124 8_2:+53351926 Msa1254970:five_prime_UTR
CTATCTTGTGGTATTGGCTA+TGG 0.375287 8_2:+53356125 Msa1254970:CDS
GGGTCTGCAGTACTTTGCTT+AGG 0.387991 8_2:+53356208 Msa1254970:CDS
GGACTCTCTTGGGAACTTGG+GGG 0.389684 8_2:+53351165 Msa1254970:five_prime_UTR
AACAAGAAGCTTTCGTTGAT+AGG 0.397043 8_2:+53353132 Msa1254970:CDS
GTTTGTTCCTTTCAATCTCT+GGG 0.399249 8_2:+53353034 Msa1254970:CDS
GGCATGATGCAGAAGCCTTA+TGG 0.399429 8_2:+53354425 Msa1254970:CDS
TTCAATCAGGTGGACTCTCT+TGG 0.404252 8_2:+53351154 Msa1254970:intron
TTTGCTGCTTCAACAAGATT+GGG 0.411156 8_2:-53351230 None:intergenic
TCAATCAGGTGGACTCTCTT+GGG 0.424399 8_2:+53351155 Msa1254970:intron
CGTATATTAGGTGCAATTGA+TGG 0.425604 8_2:+53351582 Msa1254970:five_prime_UTR
CACCATTACCAGCAGTTGCT+TGG 0.434301 8_2:+53355410 Msa1254970:CDS
GACTCTCTTGGGAACTTGGG+GGG 0.437246 8_2:+53351166 Msa1254970:five_prime_UTR
GGGTCAGATTTCACGGTTGA+AGG 0.444202 8_2:-53354517 None:intergenic
GAATGTGAAGACGGCATCCC+AGG 0.445039 8_2:-53354538 None:intergenic
CATCCCAGGGTCAGATTTCA+CGG 0.446760 8_2:-53354524 None:intergenic
GTATCTGGGATTCTTTCAAA+TGG 0.453583 8_2:-53351514 None:intergenic
CTGTCCTAGCTCTTTCGAAC+AGG 0.455979 8_2:+53352119 Msa1254970:five_prime_UTR
TGGATAGTAAGTGCCCTCTT+TGG 0.458814 8_2:+53354385 Msa1254970:CDS
ATAGCGCATAACAGTGGTTA+AGG 0.462534 8_2:-53356427 None:intergenic
CCTAGCTAGCTCTTTCCAAC+AGG 0.466762 8_2:+53350441 Msa1254970:five_prime_UTR
CACATTTAACTTAAGTGCAT+GGG 0.480127 8_2:+53351607 Msa1254970:five_prime_UTR
ATGCTGTAAATGTAAGAACT+TGG 0.485218 8_2:+53356312 Msa1254970:three_prime_UTR
CCTGTTGGAAAGAGCTAGCT+AGG 0.487652 8_2:-53350441 None:intergenic
GCTTCAAGATCATTCACTTG+TGG 0.496350 8_2:+53353011 Msa1254970:CDS
ACACATTTAACTTAAGTGCA+TGG 0.497100 8_2:+53351606 Msa1254970:five_prime_UTR
ACAGTGAGCCAAGTGGTTGT+TGG 0.497938 8_2:+53356079 Msa1254970:CDS
AGCCAAGCAACTGCTGGTAA+TGG 0.499311 8_2:-53355412 None:intergenic
GAATTGAATTGATTAAAGAA+TGG 0.501461 8_2:-53350366 None:intergenic
GTGGTTGTTGGAGCTGCTGT+AGG 0.502635 8_2:+53356091 Msa1254970:CDS
TTTACATTCCGATTGTATCT+GGG 0.506546 8_2:-53351406 None:intergenic
AATCAAAATAATATGTATCT+GGG 0.507328 8_2:-53351528 None:intergenic
ATTGATTTACAAAGAAAATG+AGG 0.507557 8_2:-53351783 None:intergenic
TGTGAAGCTAACAAGCAGAT+AGG 0.515728 8_2:+53351259 Msa1254970:five_prime_UTR
AAACATGACAGCAAAGAAGA+TGG 0.521863 8_2:-53354566 None:intergenic
TGCCAAAGCCAAGCAACTGC+TGG 0.522420 8_2:-53355418 None:intergenic
GGTCAACTTTCTCTATCTTG+TGG 0.525772 8_2:+53356113 Msa1254970:CDS
GCTATGGAATGCATTTGTGC+TGG 0.527094 8_2:+53356141 Msa1254970:CDS
TTTGTCGTATTGTACTGATT+GGG 0.534453 8_2:+53351359 Msa1254970:five_prime_UTR
TAGAGAATCCCAGATACAAT+CGG 0.538835 8_2:+53351398 Msa1254970:five_prime_UTR
TTGATTTCAGTCATACCTGC+GGG 0.539512 8_2:+53356039 Msa1254970:intron
GTAAGAACTGCTCAGAGAGA+TGG 0.542961 8_2:+53353080 Msa1254970:CDS
CAGAAGCCTTATGGTTTGCA+GGG 0.543056 8_2:+53354434 Msa1254970:CDS
ACCCTCTATGCATTCTAACA+AGG 0.546564 8_2:+53351478 Msa1254970:five_prime_UTR
GAAGCCTTATGGTTTGCAGG+GGG 0.547181 8_2:+53354436 Msa1254970:CDS
ATAGCAAAGCGTGGCTGTTG+AGG 0.552728 8_2:-53352907 None:intergenic
GGAATCAACTCTTAATCGAC+TGG 0.555196 8_2:+53353193 Msa1254970:CDS
CCCTTGTTAGAATGCATAGA+GGG 0.556342 8_2:-53351479 None:intergenic
TAAGAGTTGATTCCACGCCC+TGG 0.556905 8_2:-53353184 None:intergenic
GTTACCTGTTCGAAAGAGCT+AGG 0.559671 8_2:-53352123 None:intergenic
CAGCAGCTCCAACAACCACT+TGG 0.559945 8_2:-53356087 None:intergenic
GCTGTTGTTTACAGAGCAAG+TGG 0.563321 8_2:+53354365 Msa1254970:intron
CAGAGAGATGGAAAGAGTGA+TGG 0.564058 8_2:+53353092 Msa1254970:CDS
TGATTAAAGAATGGAAAGTG+TGG 0.566434 8_2:-53350357 None:intergenic
CAACCGTGAAATCTGACCCT+GGG 0.567329 8_2:+53354521 Msa1254970:CDS
TGCTGTAAATGTAAGAACTT+GGG 0.574552 8_2:+53356313 Msa1254970:three_prime_UTR
ACCCTTGTTAGAATGCATAG+AGG 0.577285 8_2:-53351480 None:intergenic
TCGTATTGTACTGATTGGGT+TGG 0.577912 8_2:+53351363 Msa1254970:five_prime_UTR
TCAACCGTGAAATCTGACCC+TGG 0.578334 8_2:+53354520 Msa1254970:CDS
TGGTTGTTGGAGCTGCTGTA+GGG 0.581301 8_2:+53356092 Msa1254970:CDS
CTGTTCGAAAGAGCTAGGAC+AGG 0.586473 8_2:-53352118 None:intergenic
AAAGAAGTGATACGTTGAGT+TGG 0.587481 8_2:-53356451 None:intergenic
AAGCCTTATGGTTTGCAGGG+GGG 0.591130 8_2:+53354437 Msa1254970:CDS
GATCTTGAAGCAGATAAACT+AGG 0.591700 8_2:-53352999 None:intergenic
ACGTTAAACAAGTACTACAT+TGG 0.594721 8_2:+53352008 Msa1254970:five_prime_UTR
AAAACACAGTGGTTAGCTGT+AGG 0.596490 8_2:-53351662 None:intergenic
AACGATTCTGACCCACAAAG+AGG 0.600535 8_2:-53356176 None:intergenic
ATGGATTGAGAATGTGAAGA+CGG 0.609166 8_2:-53354547 None:intergenic
GCTATCAATAAGCTCATACT+CGG 0.609685 8_2:-53351287 None:intergenic
AATGTGAAGACGGCATCCCA+GGG 0.613656 8_2:-53354537 None:intergenic
AAGTTCTTACATTTACAGCA+TGG 0.613930 8_2:-53356310 None:intergenic
CCCTCTATGCATTCTAACAA+GGG 0.616784 8_2:+53351479 Msa1254970:five_prime_UTR
TGGGTGAAAAGTGCGATGGA+TGG 0.619297 8_2:+53353053 Msa1254970:CDS
TTTGATTTCAGTCATACCTG+CGG 0.623034 8_2:+53356038 Msa1254970:intron
GCGTGGCTGTTGAGGTCATG+TGG 0.627167 8_2:-53352899 None:intergenic
TATCTTGTGAGACACGAACC+AGG 0.639692 8_2:+53351920 Msa1254970:five_prime_UTR
AGAAGCCTTATGGTTTGCAG+GGG 0.644085 8_2:+53354435 Msa1254970:CDS
GTTGGCATAGCGCATAACAG+TGG 0.656759 8_2:-53356433 None:intergenic
TCTCTGGGTGAAAAGTGCGA+TGG 0.680175 8_2:+53353049 Msa1254970:CDS
AACAACGCTTGAATTGATGA+CGG 0.682051 8_2:-53351962 None:intergenic
AGATGGATTATAGCAAAGCG+TGG 0.685105 8_2:-53352916 None:intergenic
CAATCAGTACAATACGACAA+AGG 0.690493 8_2:-53351357 None:intergenic
AACGCTTGAATTGATGACGG+TGG 0.706454 8_2:-53351959 None:intergenic
ACTTCATACAGTGAGCCAAG+TGG 0.707082 8_2:+53356072 Msa1254970:CDS
TTTAACGTGTGATGATAGTG+CGG 0.716202 8_2:-53351993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTATTATTTTTGAC+AGG + chr8_2:53350896-53350915 Msa1254970:intron 10.0%
!!! ATTTTAGTTTTTAGTAATTA+TGG + chr8_2:53350922-53350941 Msa1254970:intron 10.0%
!!! ATATATGTTTTTTTTTCTAT+AGG + chr8_2:53351084-53351103 Msa1254970:intron 10.0%
!! TTAATATTGTATAATTGTAA+AGG + chr8_2:53354191-53354210 Msa1254970:intron 10.0%
!! TATATCTCAAATTTAATTGT+AGG - chr8_2:53350990-53351009 None:intergenic 15.0%
!! AATCAAAATAATATGTATCT+GGG - chr8_2:53351531-53351550 None:intergenic 15.0%
!!! TTTCCATTTTTTAATCAATT+CGG + chr8_2:53352056-53352075 Msa1254970:five_prime_UTR 15.0%
!!! ATTTTAGTTATAGGTAATTA+TGG + chr8_2:53352288-53352307 Msa1254970:intron 15.0%
!! ATATAATTATTGCAAAAGAA+AGG + chr8_2:53353424-53353443 Msa1254970:intron 15.0%
!! AAATATGAAGATTGAAAAAA+AGG - chr8_2:53353657-53353676 None:intergenic 15.0%
!! CATTTCCTTATAAAAAATAA+CGG - chr8_2:53354102-53354121 None:intergenic 15.0%
!! AGGTAAAAATAACAAATTTA+TGG - chr8_2:53354131-53354150 None:intergenic 15.0%
!! ATTATATTAAGTGAACATTA+AGG + chr8_2:53354314-53354333 Msa1254970:intron 15.0%
!! AATACATAATAAAATGCATT+TGG - chr8_2:53354689-53354708 None:intergenic 15.0%
!!! ATTATGTATTCTTTAGAAAA+TGG + chr8_2:53354699-53354718 Msa1254970:intron 15.0%
!!! CAATTTAAGATTTAATATGT+CGG - chr8_2:53354898-53354917 None:intergenic 15.0%
!! GAATTGAATTGATTAAAGAA+TGG - chr8_2:53350369-53350388 None:intergenic 20.0%
!!! TTTTGATATACTACGAATTT+TGG - chr8_2:53350415-53350434 None:intergenic 20.0%
!! TTAATAATTAACAACTGTCT+TGG - chr8_2:53350869-53350888 None:intergenic 20.0%
!!! GTTTTTACTTTTATTCAATC+AGG + chr8_2:53351141-53351160 Msa1254970:intron 20.0%
!!! ATTTTGTTTTTTCGTATAAG+TGG + chr8_2:53351429-53351448 Msa1254970:five_prime_UTR 20.0%
!! GAATCAAAATAATATGTATC+TGG - chr8_2:53351532-53351551 None:intergenic 20.0%
!!! ATTGATTTACAAAGAAAATG+AGG - chr8_2:53351786-53351805 None:intergenic 20.0%
!! CCATTTCAATGATAATTTAT+GGG - chr8_2:53351815-53351834 None:intergenic 20.0%
!! ACCATTTCAATGATAATTTA+TGG - chr8_2:53351816-53351835 None:intergenic 20.0%
!!! TAATTCGTTTAACTTTTTAG+CGG + chr8_2:53351863-53351882 Msa1254970:five_prime_UTR 20.0%
!!! TTCCATTTTTTAATCAATTC+GGG + chr8_2:53352057-53352076 Msa1254970:five_prime_UTR 20.0%
!! CCTATAACTAAAATTGAAAA+GGG - chr8_2:53352282-53352301 None:intergenic 20.0%
!! ACCTATAACTAAAATTGAAA+AGG - chr8_2:53352283-53352302 None:intergenic 20.0%
!! AACTAGTTGTAATAATTGTT+TGG - chr8_2:53352597-53352616 None:intergenic 20.0%
!! ATAAGTAAACAAGAATCAAA+TGG - chr8_2:53352677-53352696 None:intergenic 20.0%
!!! TTTTTCAAGTATCTTTGTTT+AGG - chr8_2:53352966-53352985 None:intergenic 20.0%
!!! ATTTATTTTTTTCTATCGTG+TGG + chr8_2:53353293-53353312 Msa1254970:intron 20.0%
!!! ATTTTATTGAAGAAATAGAC+TGG + chr8_2:53353346-53353365 Msa1254970:intron 20.0%
!! TGCAATAATTATATCATCAA+CGG - chr8_2:53353418-53353437 None:intergenic 20.0%
!!! GACAAAAAGATTTTAAAACT+TGG + chr8_2:53353448-53353467 Msa1254970:intron 20.0%
!! TCAAAAAATTTAGCATCATT+TGG + chr8_2:53353804-53353823 Msa1254970:intron 20.0%
!!! TATCACCGTTATTTTTTATA+AGG + chr8_2:53354094-53354113 Msa1254970:intron 20.0%
!!! TGCAATTTCAGTTTTAATAT+GGG - chr8_2:53354254-53354273 None:intergenic 20.0%
!!! TTGCAATTTCAGTTTTAATA+TGG - chr8_2:53354255-53354274 None:intergenic 20.0%
!! GTTCACTTAATATAATACAA+TGG - chr8_2:53354310-53354329 None:intergenic 20.0%
!! TAAATTGTTAAGAATTGATG+TGG + chr8_2:53354911-53354930 Msa1254970:intron 20.0%
!! TTGACAATCAAATATCTATT+TGG - chr8_2:53355122-53355141 None:intergenic 20.0%
!! TTAAAACAAAACAGAGATAA+TGG - chr8_2:53355167-53355186 None:intergenic 20.0%
!! ATGCAATTCTATTGTATTTA+TGG - chr8_2:53355325-53355344 None:intergenic 20.0%
!! ACAATGATCAACAATAAAAA+TGG - chr8_2:53356339-53356358 None:intergenic 20.0%
! CAATTCTTGAATAAACTTCT+TGG + chr8_2:53350383-53350402 Msa1254970:five_prime_UTR 25.0%
! CAAAAATCAAAATGAATACG+AGG - chr8_2:53350474-53350493 None:intergenic 25.0%
!!! ATTTTGATTTTTGTTGTTGC+TGG + chr8_2:53350481-53350500 Msa1254970:intron 25.0%
!!! TTGAATTTTGAAATGGAGTT+TGG + chr8_2:53350551-53350570 Msa1254970:intron 25.0%
!! TTTGAGATATATTCAATGAG+AGG + chr8_2:53350999-53351018 Msa1254970:intron 25.0%
!!! TTTACTTTTATTCAATCAGG+TGG + chr8_2:53351144-53351163 Msa1254970:intron 25.0%
! ATTATAGACTTGCGTATATT+AGG + chr8_2:53351570-53351589 Msa1254970:five_prime_UTR 25.0%
! CACAAAAGTTGTTAAGAAAA+TGG - chr8_2:53351693-53351712 None:intergenic 25.0%
! CCCATAAATTATCATTGAAA+TGG + chr8_2:53351812-53351831 Msa1254970:five_prime_UTR 25.0%
! TCTCACAAGATAAAAAACAT+GGG - chr8_2:53351912-53351931 None:intergenic 25.0%
! TGATTAAAAAATGGAAAGTG+TGG - chr8_2:53352053-53352072 None:intergenic 25.0%
! TTCCCGAATTGATTAAAAAA+TGG - chr8_2:53352062-53352081 None:intergenic 25.0%
! GGATATTGATATACGAAATT+TGG - chr8_2:53352100-53352119 None:intergenic 25.0%
! CAAAAATTACAGCATAAAAG+GGG - chr8_2:53352207-53352226 None:intergenic 25.0%
! CCAAAAATTACAGCATAAAA+GGG - chr8_2:53352208-53352227 None:intergenic 25.0%
! ACCAAAAATTACAGCATAAA+AGG - chr8_2:53352209-53352228 None:intergenic 25.0%
!!! CCCTTTTCAATTTTAGTTAT+AGG + chr8_2:53352279-53352298 Msa1254970:intron 25.0%
! TTCTAATTATAACTCCTCTT+GGG + chr8_2:53352339-53352358 Msa1254970:intron 25.0%
!! CTATTTCTTATATAACTTGC+TGG - chr8_2:53352381-53352400 None:intergenic 25.0%
! ATTATAGACTTGCATAGATT+AGG + chr8_2:53352737-53352756 Msa1254970:intron 25.0%
! TGATGTATAAAAAAAGACAG+TGG - chr8_2:53352843-53352862 None:intergenic 25.0%
!!! ACTGTCTTTTTTTATACATC+AGG + chr8_2:53352842-53352861 Msa1254970:intron 25.0%
!!! ATCCATCTAACAATTTTTTG+AGG + chr8_2:53352931-53352950 Msa1254970:CDS 25.0%
! ATGAGCAGAAAAAACAATAT+AGG - chr8_2:53353275-53353294 None:intergenic 25.0%
! TAAGCTATTAAGAATGGATA+CGG - chr8_2:53353488-53353507 None:intergenic 25.0%
! TATCCATTCTTAATAGCTTA+AGG + chr8_2:53353488-53353507 Msa1254970:intron 25.0%
! ATCCATTCTTAATAGCTTAA+GGG + chr8_2:53353489-53353508 Msa1254970:intron 25.0%
! TTGTCAAAAGAAAAACCATT+TGG + chr8_2:53353987-53354006 Msa1254970:intron 25.0%
!!! TATTTCAAGTTGTGAAGAAA+AGG - chr8_2:53354151-53354170 None:intergenic 25.0%
! AATAACAAAAACACCAAAGA+GGG - chr8_2:53354401-53354420 None:intergenic 25.0%
! AAATAACAAAAACACCAAAG+AGG - chr8_2:53354402-53354421 None:intergenic 25.0%
!!! TCTTTGGTGTTTTTGTTATT+TGG + chr8_2:53354401-53354420 Msa1254970:CDS 25.0%
! ATCATTTGAATGGAAATAAC+AGG - chr8_2:53354618-53354637 None:intergenic 25.0%
!!! TTTGTAATGGATCATTTGAA+TGG - chr8_2:53354628-53354647 None:intergenic 25.0%
!! GATAGTTTGAAGTTTGAATT+TGG + chr8_2:53354933-53354952 Msa1254970:intron 25.0%
! TGAATATTCTGGTAACTATT+TGG - chr8_2:53355203-53355222 None:intergenic 25.0%
! GATATACAACTCAACTAAAT+TGG - chr8_2:53355476-53355495 None:intergenic 25.0%
!! ATCTTTTATTCTCGTTTCAT+TGG + chr8_2:53355493-53355512 Msa1254970:intron 25.0%
!! ACATTAATTTGATCTCTTAC+AGG + chr8_2:53355618-53355637 Msa1254970:intron 25.0%
!! CATTAATTTGATCTCTTACA+GGG + chr8_2:53355619-53355638 Msa1254970:intron 25.0%
! AGTATATAATGTTCGTAGTT+AGG - chr8_2:53355897-53355916 None:intergenic 25.0%
! AAACTAACATTTGCTTAGTA+TGG + chr8_2:53355920-53355939 Msa1254970:intron 25.0%
! AACATATTATGTGCACTATA+TGG - chr8_2:53355989-53356008 None:intergenic 25.0%
TGATTAAAGAATGGAAAGTG+TGG - chr8_2:53350360-53350379 None:intergenic 30.0%
TGGAATTTCTTTGATTCCTT+TGG + chr8_2:53350501-53350520 Msa1254970:intron 30.0%
!! GGTGGATTTGAATTTTGAAA+TGG + chr8_2:53350544-53350563 Msa1254970:intron 30.0%
!!! AGTTTGGTTTCTTGTTGTTT+TGG + chr8_2:53350567-53350586 Msa1254970:intron 30.0%
TCACTCTCATATCACAAAAA+TGG - chr8_2:53350651-53350670 None:intergenic 30.0%
TTTGTGATATGAGAGTGAAA+TGG + chr8_2:53350653-53350672 Msa1254970:intron 30.0%
!! TTTGTCGTATTGTACTGATT+GGG + chr8_2:53351359-53351378 Msa1254970:five_prime_UTR 30.0%
TTTACATTCCGATTGTATCT+GGG - chr8_2:53351409-53351428 None:intergenic 30.0%
! TTTTACATTCCGATTGTATC+TGG - chr8_2:53351410-53351429 None:intergenic 30.0%
CATAGAGGGTAATAATTGTT+TGG - chr8_2:53351468-53351487 None:intergenic 30.0%
! ACACATTTAACTTAAGTGCA+TGG + chr8_2:53351606-53351625 Msa1254970:five_prime_UTR 30.0%
! CACATTTAACTTAAGTGCAT+GGG + chr8_2:53351607-53351626 Msa1254970:five_prime_UTR 30.0%
AAATGGTTGAAAAAACACAG+TGG - chr8_2:53351676-53351695 None:intergenic 30.0%
! ACTTTATCTCTCTTTTGTTC+TGG + chr8_2:53351747-53351766 Msa1254970:five_prime_UTR 30.0%
CTCACAAGATAAAAAACATG+GGG - chr8_2:53351911-53351930 None:intergenic 30.0%
GTCTCACAAGATAAAAAACA+TGG - chr8_2:53351913-53351932 None:intergenic 30.0%
ACGTTAAACAAGTACTACAT+TGG + chr8_2:53352008-53352027 Msa1254970:five_prime_UTR 30.0%
CAGAAATCAAAATGAATGTG+AGG - chr8_2:53352152-53352171 None:intergenic 30.0%
!!! ATTTTGATTTCTGCTGTTTC+CGG + chr8_2:53352159-53352178 Msa1254970:intron 30.0%
CAAAGGAATCAAAGAAATTC+CGG - chr8_2:53350503-53350522 None:intergenic 30.0%
! CCCTTTTATGCTGTAATTTT+TGG + chr8_2:53352205-53352224 Msa1254970:intron 30.0%
CTTCTAATTATAACTCCTCT+TGG + chr8_2:53352338-53352357 Msa1254970:intron 30.0%
TCTGTCCTAATGTACTTATT+GGG + chr8_2:53352483-53352502 Msa1254970:intron 30.0%
TTTACATTCCGATTGTATCT+GGG - chr8_2:53351409-53351428 None:intergenic 30.0%
! TTTTACATTCCGATTGTATC+TGG - chr8_2:53351410-53351429 None:intergenic 30.0%
GTTTATCGTAGTTGTATAAG+TGG + chr8_2:53352558-53352577 Msa1254970:intron 30.0%
CATAGATTAGGTTCAATTGA+CGG + chr8_2:53352749-53352768 Msa1254970:intron 30.0%
! ACACATTTAACTTAAGTGGA+TGG + chr8_2:53352773-53352792 Msa1254970:intron 30.0%
! CACATTTAACTTAAGTGGAT+GGG + chr8_2:53352774-53352793 Msa1254970:intron 30.0%
GTCCTCAAAAAATTGTTAGA+TGG - chr8_2:53352936-53352955 None:intergenic 30.0%
TATTGATGAATCTGAATCTC+TGG - chr8_2:53353394-53353413 None:intergenic 30.0%
TTAGATTTGTATGGTAGGAT+AGG - chr8_2:53353601-53353620 None:intergenic 30.0%
!!! TGGTTTTAGATTTGTATGGT+AGG - chr8_2:53353606-53353625 None:intergenic 30.0%
!!! GAGTTGGTTTTAGATTTGTA+TGG - chr8_2:53353610-53353629 None:intergenic 30.0%
AGCATACTTTGATATAGTCA+AGG + chr8_2:53353703-53353722 Msa1254970:intron 30.0%
CATCATTTGGAAAATGTTCA+GGG + chr8_2:53353817-53353836 Msa1254970:intron 30.0%
AAACCGAGTTTAGATTCTTA+AGG + chr8_2:53354017-53354036 Msa1254970:intron 30.0%
TAAGTGAACATTAAGGTATG+AGG + chr8_2:53354321-53354340 Msa1254970:intron 30.0%
AAGTGAACATTAAGGTATGA+GGG + chr8_2:53354322-53354341 Msa1254970:intron 30.0%
!!! TTGGTGTTTTTGTTATTTGG+AGG + chr8_2:53354404-53354423 Msa1254970:CDS 30.0%
TTTGAATGGAAATAACAGGT+GGG - chr8_2:53354614-53354633 None:intergenic 30.0%
ATTTGAATGGAAATAACAGG+TGG - chr8_2:53354615-53354634 None:intergenic 30.0%
!!! TGCATAGGCTTGTTTTATTA+GGG - chr8_2:53354751-53354770 None:intergenic 30.0%
!!! ATGCATAGGCTTGTTTTATT+AGG - chr8_2:53354752-53354771 None:intergenic 30.0%
AAAGAAAGAACAGAATGCAT+AGG - chr8_2:53354766-53354785 None:intergenic 30.0%
AGGAAATTCAGTGAAAACAA+GGG + chr8_2:53355052-53355071 Msa1254970:intron 30.0%
AGTTACCAGAATATTCATCT+AGG + chr8_2:53355206-53355225 Msa1254970:intron 30.0%
TGATTCCTAGATGAATATTC+TGG - chr8_2:53355214-53355233 None:intergenic 30.0%
ATTCATCTAGGAATCAATTC+AGG + chr8_2:53355218-53355237 Msa1254970:intron 30.0%
TTCATCTAGGAATCAATTCA+GGG + chr8_2:53355219-53355238 Msa1254970:intron 30.0%
ATTCAGGGAAAAAAAACCTT+TGG + chr8_2:53355234-53355253 Msa1254970:intron 30.0%
!! TTTGGCATTTGGTTCTTATT+TGG + chr8_2:53355434-53355453 Msa1254970:CDS 30.0%
! ACTACTATGATGGAAAGTTA+AGG - chr8_2:53355567-53355586 None:intergenic 30.0%
TAACAAAGTTCTTGTGAAGA+GGG - chr8_2:53355658-53355677 None:intergenic 30.0%
TTAACAAAGTTCTTGTGAAG+AGG - chr8_2:53355659-53355678 None:intergenic 30.0%
!!! GTCAGAATCGTTGTTATTTT+GGG + chr8_2:53356187-53356206 Msa1254970:CDS 30.0%
!!! TCAGAATCGTTGTTATTTTG+GGG + chr8_2:53356188-53356207 Msa1254970:CDS 30.0%
! CTTAGGTTTTCTTTTACATG+TGG + chr8_2:53356225-53356244 Msa1254970:CDS 30.0%
AAGTTCTTACATTTACAGCA+TGG - chr8_2:53356313-53356332 None:intergenic 30.0%
ATGCTGTAAATGTAAGAACT+TGG + chr8_2:53356312-53356331 Msa1254970:three_prime_UTR 30.0%
TGCTGTAAATGTAAGAACTT+GGG + chr8_2:53356313-53356332 Msa1254970:three_prime_UTR 30.0%
!!! AATGTTGTTTTATCCTGAGT+TGG + chr8_2:53356479-53356498 Msa1254970:three_prime_UTR 30.0%
!!! GCTGCTGTAATTTTTGGAAT+TGG + chr8_2:53350523-53350542 Msa1254970:intron 35.0%
!!! GCTGTAATTTTTGGAATTGG+TGG + chr8_2:53350526-53350545 Msa1254970:intron 35.0%
! GTTTACTCTTTGTACTGGTA+GGG - chr8_2:53350752-53350771 None:intergenic 35.0%
TCTTGGTTTACTCTTTGTAC+TGG - chr8_2:53350757-53350776 None:intergenic 35.0%
AGCAGTTGGAGTATATATCT+TGG - chr8_2:53350774-53350793 None:intergenic 35.0%
TTATCTACGTTACTAGCAGT+TGG - chr8_2:53350788-53350807 None:intergenic 35.0%
TATTCAATGAGAGGAGATTC+TGG + chr8_2:53351008-53351027 Msa1254970:intron 35.0%
! TTTGCTGCTTCAACAAGATT+GGG - chr8_2:53351233-53351252 None:intergenic 35.0%
!! TTTTGCTGCTTCAACAAGAT+TGG - chr8_2:53351234-53351253 None:intergenic 35.0%
GCTATCAATAAGCTCATACT+CGG - chr8_2:53351290-53351309 None:intergenic 35.0%
CAATCAGTACAATACGACAA+AGG - chr8_2:53351360-53351379 None:intergenic 35.0%
! CTTTGTCGTATTGTACTGAT+TGG + chr8_2:53351358-53351377 Msa1254970:five_prime_UTR 35.0%
TAGAGAATCCCAGATACAAT+CGG + chr8_2:53351398-53351417 Msa1254970:five_prime_UTR 35.0%
! GTATCTGGGATTCTTTCAAA+TGG - chr8_2:53351517-53351536 None:intergenic 35.0%
CGTATATTAGGTGCAATTGA+TGG + chr8_2:53351582-53351601 Msa1254970:five_prime_UTR 35.0%
AACAACGCTTGAATTGATGA+CGG - chr8_2:53351965-53351984 None:intergenic 35.0%
! TTTAACGTGTGATGATAGTG+CGG - chr8_2:53351996-53352015 None:intergenic 35.0%
!! TTTTTGGTGTGTGATGATTC+TGG + chr8_2:53352221-53352240 Msa1254970:intron 35.0%
!! TTTTGGTGTGTGATGATTCT+GGG + chr8_2:53352222-53352241 Msa1254970:intron 35.0%
CAATAAGTACATTAGGACAG+AGG - chr8_2:53352484-53352503 None:intergenic 35.0%
CTCTGTCCTAATGTACTTAT+TGG + chr8_2:53352482-53352501 Msa1254970:intron 35.0%
TCCTAATGTACTTATTGGGT+TGG + chr8_2:53352487-53352506 Msa1254970:intron 35.0%
ACCAACCCAATAAGTACATT+AGG - chr8_2:53352491-53352510 None:intergenic 35.0%
AAGAGAATCCCAGATACAAT+CGG + chr8_2:53352522-53352541 Msa1254970:intron 35.0%
ACCCTCTATGTATTCTAACA+AGG + chr8_2:53352631-53352650 Msa1254970:intron 35.0%
CCCTTGTTAGAATACATAGA+GGG - chr8_2:53352635-53352654 None:intergenic 35.0%
CCCTCTATGTATTCTAACAA+GGG + chr8_2:53352632-53352651 Msa1254970:intron 35.0%
ACCCTTGTTAGAATACATAG+AGG - chr8_2:53352636-53352655 None:intergenic 35.0%
! CGGTACACATTTAACTTAAG+TGG + chr8_2:53352769-53352788 Msa1254970:intron 35.0%
GATCTTGAAGCAGATAAACT+AGG - chr8_2:53353002-53353021 None:intergenic 35.0%
CTTCAAGATCATTCACTTGT+GGG + chr8_2:53353012-53353031 Msa1254970:CDS 35.0%
GTTTGTTCCTTTCAATCTCT+GGG + chr8_2:53353034-53353053 Msa1254970:CDS 35.0%
AACAAGAAGCTTTCGTTGAT+AGG + chr8_2:53353132-53353151 Msa1254970:CDS 35.0%
CTAACATGGAGTGGTAATTT+AGG - chr8_2:53353237-53353256 None:intergenic 35.0%
AACAACCAGAGTGAATAACT+TGG + chr8_2:53353543-53353562 Msa1254970:intron 35.0%
GTTATCCAAGTTATTCACTC+TGG - chr8_2:53353551-53353570 None:intergenic 35.0%
ACTTGGATAACAAACCGATA+AGG + chr8_2:53353560-53353579 Msa1254970:intron 35.0%
TAAAACCAACTCTAGTGCTT+TGG + chr8_2:53353618-53353637 Msa1254970:intron 35.0%
! AAAATCCAAAGCACTAGAGT+TGG - chr8_2:53353626-53353645 None:intergenic 35.0%
!! AACTCTAGTGCTTTGGATTT+TGG + chr8_2:53353625-53353644 Msa1254970:intron 35.0%
CCAACATATCAGTAACAACA+GGG - chr8_2:53353759-53353778 None:intergenic 35.0%
TCCAACATATCAGTAACAAC+AGG - chr8_2:53353760-53353779 None:intergenic 35.0%
GCATCATTTGGAAAATGTTC+AGG + chr8_2:53353816-53353835 Msa1254970:intron 35.0%
! TGTTTGAAATTGCTCCAAGA+AGG - chr8_2:53353867-53353886 None:intergenic 35.0%
!!! CTCGGTTTTTTAGTTCCAAA+TGG - chr8_2:53354005-53354024 None:intergenic 35.0%
!! GTTTTAATATGGGCAAGCTA+TGG - chr8_2:53354244-53354263 None:intergenic 35.0%
! ATGGATTGAGAATGTGAAGA+CGG - chr8_2:53354550-53354569 None:intergenic 35.0%
AAACATGACAGCAAAGAAGA+TGG - chr8_2:53354569-53354588 None:intergenic 35.0%
GGGACAATTTGTCTTTGTAA+TGG - chr8_2:53354641-53354660 None:intergenic 35.0%
TATGGTGAAAGGAACTGATA+TGG + chr8_2:53354840-53354859 Msa1254970:intron 35.0%
TTGTACAGATCTTTGACAAC+AGG + chr8_2:53355032-53355051 Msa1254970:intron 35.0%
CAGGAAATTCAGTGAAAACA+AGG + chr8_2:53355051-53355070 Msa1254970:intron 35.0%
GGAAATTCAGTGAAAACAAG+GGG + chr8_2:53355053-53355072 Msa1254970:intron 35.0%
!! GAAGACATAGTTCTAACCAA+AGG - chr8_2:53355253-53355272 None:intergenic 35.0%
TATGTCTTCTCTCTACTTCA+TGG + chr8_2:53355264-53355283 Msa1254970:intron 35.0%
ACACAAAAAAGCAGAGAGTA+AGG - chr8_2:53355526-53355545 None:intergenic 35.0%
! TTTTGTGTGCTTCATGACAT+TGG + chr8_2:53355538-53355557 Msa1254970:intron 35.0%
TGTGAATATGATGCAGCTAA+TGG - chr8_2:53355601-53355620 None:intergenic 35.0%
! ACATCCAAAGGACTTTGAAA+AGG + chr8_2:53355854-53355873 Msa1254970:intron 35.0%
! ATCTCCTTTTCAAAGTCCTT+TGG - chr8_2:53355861-53355880 None:intergenic 35.0%
! TTTGATTTCAGTCATACCTG+CGG + chr8_2:53356038-53356057 Msa1254970:intron 35.0%
CTTTCTCTATCTTGTGGTAT+TGG + chr8_2:53356119-53356138 Msa1254970:CDS 35.0%
! ATGCTTTTGTATCCTCTTTG+TGG + chr8_2:53356164-53356183 Msa1254970:CDS 35.0%
! TGCTTTTGTATCCTCTTTGT+GGG + chr8_2:53356165-53356184 Msa1254970:CDS 35.0%
!!! GGTCAGAATCGTTGTTATTT+TGG + chr8_2:53356186-53356205 Msa1254970:CDS 35.0%
! TTTTACATGTGGTTCGCAAT+TGG + chr8_2:53356236-53356255 Msa1254970:CDS 35.0%
AAAGAAGTGATACGTTGAGT+TGG - chr8_2:53356454-53356473 None:intergenic 35.0%
ATACGAGGTATGTTACCTGT+TGG - chr8_2:53350459-53350478 None:intergenic 40.0%
CCAAAAATTACAGCAGCCAA+AGG - chr8_2:53350520-53350539 None:intergenic 40.0%
! CCTTTGGCTGCTGTAATTTT+TGG + chr8_2:53350517-53350536 Msa1254970:intron 40.0%
! GGTTTACTCTTTGTACTGGT+AGG - chr8_2:53350753-53350772 None:intergenic 40.0%
AGTAACGTAGATAACCTGAC+TGG + chr8_2:53350794-53350813 Msa1254970:intron 40.0%
TTCACACAATCTTACCAGTC+AGG - chr8_2:53350811-53350830 None:intergenic 40.0%
ATGTTATGTATGCAGCTAGC+TGG - chr8_2:53351053-53351072 None:intergenic 40.0%
TGTGAAGCTAACAAGCAGAT+AGG + chr8_2:53351259-53351278 Msa1254970:five_prime_UTR 40.0%
!! TCGTATTGTACTGATTGGGT+TGG + chr8_2:53351363-53351382 Msa1254970:five_prime_UTR 40.0%
ACCCTCTATGCATTCTAACA+AGG + chr8_2:53351478-53351497 Msa1254970:five_prime_UTR 40.0%
CCCTTGTTAGAATGCATAGA+GGG - chr8_2:53351482-53351501 None:intergenic 40.0%
CCCTCTATGCATTCTAACAA+GGG + chr8_2:53351479-53351498 Msa1254970:five_prime_UTR 40.0%
ACCCTTGTTAGAATGCATAG+AGG - chr8_2:53351483-53351502 None:intergenic 40.0%
! AAAACACAGTGGTTAGCTGT+AGG - chr8_2:53351665-53351684 None:intergenic 40.0%
! CAATTCAAGCGTTGTTGTCT+TGG + chr8_2:53351969-53351988 Msa1254970:five_prime_UTR 40.0%
! AAGTGTGGTTTTCGTGTCTT+TGG - chr8_2:53352038-53352057 None:intergenic 40.0%
CAGCATAAAAGGGGTTACAA+AGG - chr8_2:53352198-53352217 None:intergenic 40.0%
! TGTGTGATGATTCTGGGAAT+TGG + chr8_2:53352228-53352247 Msa1254970:intron 40.0%
ATAACTCCTCTTGGGAACTT+AGG + chr8_2:53352347-53352366 Msa1254970:intron 40.0%
! AAAGACAGTGGTTAGCTGTA+GGG - chr8_2:53352831-53352850 None:intergenic 40.0%
! AAAAGACAGTGGTTAGCTGT+AGG - chr8_2:53352832-53352851 None:intergenic 40.0%
!! AGATGGATTATAGCAAAGCG+TGG - chr8_2:53352919-53352938 None:intergenic 40.0%
GCTTCAAGATCATTCACTTG+TGG + chr8_2:53353011-53353030 Msa1254970:CDS 40.0%
! GGTTTGTTCCTTTCAATCTC+TGG + chr8_2:53353033-53353052 Msa1254970:CDS 40.0%
! CTTTTCACCCAGAGATTGAA+AGG - chr8_2:53353044-53353063 None:intergenic 40.0%
! TGAGCCAAAGTTTTTGTTCC+AGG + chr8_2:53353166-53353185 Msa1254970:CDS 40.0%
! GAGCCAAAGTTTTTGTTCCA+GGG + chr8_2:53353167-53353186 Msa1254970:CDS 40.0%
GGAATCAACTCTTAATCGAC+TGG + chr8_2:53353193-53353212 Msa1254970:CDS 40.0%
GTGGTAATTTAGGAAGGAAG+TGG - chr8_2:53353227-53353246 None:intergenic 40.0%
CATGGAGTGGTAATTTAGGA+AGG - chr8_2:53353233-53353252 None:intergenic 40.0%
ATTACCACTCCATGTTAGCT+TGG + chr8_2:53353239-53353258 Msa1254970:intron 40.0%
CTATCGTGTGGAATGTGTAT+AGG + chr8_2:53353305-53353324 Msa1254970:intron 40.0%
CTGAATCTCTGGATTCTGAA+TGG - chr8_2:53353383-53353402 None:intergenic 40.0%
CGCCCTTAAGCTATTAAGAA+TGG - chr8_2:53353494-53353513 None:intergenic 40.0%
TTCAACCAGTTTGGACTTCA+TGG - chr8_2:53353525-53353544 None:intergenic 40.0%
TCGGGAAATAGCAACCTTAT+CGG - chr8_2:53353577-53353596 None:intergenic 40.0%
TTTGTATGGTAGGATAGGCT+CGG - chr8_2:53353596-53353615 None:intergenic 40.0%
!! AGTGCTTTGGATTTTGGAAG+TGG + chr8_2:53353631-53353650 Msa1254970:intron 40.0%
GTAACAACAGGGAACTCAAT+AGG - chr8_2:53353748-53353767 None:intergenic 40.0%
CCCTGTTGTTACTGATATGT+TGG + chr8_2:53353756-53353775 Msa1254970:intron 40.0%
TTTGGAAAATGTTCAGGGTG+TGG + chr8_2:53353822-53353841 Msa1254970:intron 40.0%
! ACCTACCTCATTTTCCTTCT+TGG + chr8_2:53353850-53353869 Msa1254970:intron 40.0%
TCCAAGAAGGAAAATGAGGT+AGG - chr8_2:53353854-53353873 None:intergenic 40.0%
TTGCTCCAAGAAGGAAAATG+AGG - chr8_2:53353858-53353877 None:intergenic 40.0%
ACTAAACGACAGAACGATCA+TGG - chr8_2:53353924-53353943 None:intergenic 40.0%
CCGCCTTAAGAATCTAAACT+CGG - chr8_2:53354023-53354042 None:intergenic 40.0%
CCGAGTTTAGATTCTTAAGG+CGG + chr8_2:53354020-53354039 Msa1254970:intron 40.0%
AGTATTTGAGTGCCAACCTT+AGG + chr8_2:53354278-53354297 Msa1254970:intron 40.0%
GTATTTGAGTGCCAACCTTA+GGG + chr8_2:53354279-53354298 Msa1254970:intron 40.0%
CAAGTACTTATCACAGAGCA+GGG - chr8_2:53354661-53354680 None:intergenic 40.0%
ACAAGTACTTATCACAGAGC+AGG - chr8_2:53354662-53354681 None:intergenic 40.0%
! AGGTTACGAGAGCATAGATA+TGG + chr8_2:53354822-53354841 Msa1254970:intron 40.0%
! GAGAGCATAGATATGGTGAA+AGG + chr8_2:53354829-53354848 Msa1254970:intron 40.0%
! TCATGGAAGTGTAGATGTGT+TGG + chr8_2:53355281-53355300 Msa1254970:intron 40.0%
!! TGTTTCTTTGGTGATGATGC+AGG + chr8_2:53355360-53355379 Msa1254970:intron 40.0%
TTATTCTCGTTTCATTGGCG+TGG + chr8_2:53355498-53355517 Msa1254970:intron 40.0%
CGAGGTAGTAACTACTATGA+TGG - chr8_2:53355577-53355596 None:intergenic 40.0%
!! CTTAGTATGGTTCGAGTTGT+AGG + chr8_2:53355933-53355952 Msa1254970:intron 40.0%
TTGATTTCAGTCATACCTGC+GGG + chr8_2:53356039-53356058 Msa1254970:intron 40.0%
GGTCAACTTTCTCTATCTTG+TGG + chr8_2:53356113-53356132 Msa1254970:CDS 40.0%
!! CTATCTTGTGGTATTGGCTA+TGG + chr8_2:53356125-53356144 Msa1254970:CDS 40.0%
ATAGCGCATAACAGTGGTTA+AGG - chr8_2:53356430-53356449 None:intergenic 40.0%
! ACTCTTTGTACTGGTAGGGA+GGG - chr8_2:53350748-53350767 None:intergenic 45.0%
! TACTCTTTGTACTGGTAGGG+AGG - chr8_2:53350749-53350768 None:intergenic 45.0%
ACCAGACTCGTACGAATTGT+TGG + chr8_2:53350841-53350860 Msa1254970:intron 45.0%
TCCAACAATTCGTACGAGTC+TGG - chr8_2:53350845-53350864 None:intergenic 45.0%
! TTCAATCAGGTGGACTCTCT+TGG + chr8_2:53351154-53351173 Msa1254970:intron 45.0%
! TCAATCAGGTGGACTCTCTT+GGG + chr8_2:53351155-53351174 Msa1254970:intron 45.0%
TATCTTGTGAGACACGAACC+AGG + chr8_2:53351920-53351939 Msa1254970:five_prime_UTR 45.0%
! GGCATTTTCACACCAAAACC+TGG - chr8_2:53351941-53351960 None:intergenic 45.0%
!! AACGCTTGAATTGATGACGG+TGG - chr8_2:53351962-53351981 None:intergenic 45.0%
GTTACCTGTTCGAAAGAGCT+AGG - chr8_2:53352126-53352145 None:intergenic 45.0%
! GTGATGATTCTGGGAATTGG+TGG + chr8_2:53352231-53352250 Msa1254970:intron 45.0%
ATTACGCCTAAGTTCCCAAG+AGG - chr8_2:53352356-53352375 None:intergenic 45.0%
CATAGAGGGTCTAAGTGAAG+AGG - chr8_2:53352621-53352640 None:intergenic 45.0%
GTAAGAACTGCTCAGAGAGA+TGG + chr8_2:53353080-53353099 Msa1254970:CDS 45.0%
CAGAGAGATGGAAAGAGTGA+TGG + chr8_2:53353092-53353111 Msa1254970:CDS 45.0%
ACGCCCTGGAACAAAAACTT+TGG - chr8_2:53353173-53353192 None:intergenic 45.0%
! AAAGTTTTTGTTCCAGGGCG+TGG + chr8_2:53353172-53353191 Msa1254970:CDS 45.0%
CAGTAGAAGCCAAGCTAACA+TGG - chr8_2:53353251-53353270 None:intergenic 45.0%
CACTACCATGAAGTCCAAAC+TGG + chr8_2:53353517-53353536 Msa1254970:intron 45.0%
CTCTGGTTGTTCAACCAGTT+TGG - chr8_2:53353534-53353553 None:intergenic 45.0%
TTGTATGGTAGGATAGGCTC+GGG - chr8_2:53353595-53353614 None:intergenic 45.0%
AACAGGGAACTCAATAGGAG+TGG - chr8_2:53353743-53353762 None:intergenic 45.0%
GACAAAGCAGAGTTGTCTTG+TGG - chr8_2:53353972-53353991 None:intergenic 45.0%
AATACAATGGCAGCTCCCTA+AGG - chr8_2:53354297-53354316 None:intergenic 45.0%
! GCTGTTGTTTACAGAGCAAG+TGG + chr8_2:53354365-53354384 Msa1254970:intron 45.0%
TGGATAGTAAGTGCCCTCTT+TGG + chr8_2:53354385-53354404 Msa1254970:CDS 45.0%
! CAGAAGCCTTATGGTTTGCA+GGG + chr8_2:53354434-53354453 Msa1254970:CDS 45.0%
! AGAAGCCTTATGGTTTGCAG+GGG + chr8_2:53354435-53354454 Msa1254970:CDS 45.0%
CCTTCTGAGCTTTCAGAATG+AGG - chr8_2:53354805-53354824 None:intergenic 45.0%
! CCTCATTCTGAAAGCTCAGA+AGG + chr8_2:53354802-53354821 Msa1254970:intron 45.0%
!! AGTTGCTTGGCTTTGGCATT+TGG + chr8_2:53355423-53355442 Msa1254970:CDS 45.0%
! TATGATGCAGCTAATGGACG+AGG - chr8_2:53355595-53355614 None:intergenic 45.0%
AACCACTGAGCGATATCTTG+GGG - chr8_2:53355826-53355845 None:intergenic 45.0%
CAACCACTGAGCGATATCTT+GGG - chr8_2:53355827-53355846 None:intergenic 45.0%
TCAACCACTGAGCGATATCT+TGG - chr8_2:53355828-53355847 None:intergenic 45.0%
!! AGTATGGTTCGAGTTGTAGG+TGG + chr8_2:53355936-53355955 Msa1254970:intron 45.0%
ACTTCATACAGTGAGCCAAG+TGG + chr8_2:53356072-53356091 Msa1254970:CDS 45.0%
GCTATGGAATGCATTTGTGC+TGG + chr8_2:53356141-53356160 Msa1254970:CDS 45.0%
AACGATTCTGACCCACAAAG+AGG - chr8_2:53356179-53356198 None:intergenic 45.0%
CCTGTTGGAAAGAGCTAGCT+AGG - chr8_2:53350444-53350463 None:intergenic 50.0%
! CCTAGCTAGCTCTTTCCAAC+AGG + chr8_2:53350441-53350460 Msa1254970:five_prime_UTR 50.0%
CACTCAAACGCAGCACAAAG+AGG - chr8_2:53350596-53350615 None:intergenic 50.0%
CTCTTTGTGCTGCGTTTGAG+TGG + chr8_2:53350594-53350613 Msa1254970:intron 50.0%
!! ATGCAGCTAGCTGGTTTGAG+TGG - chr8_2:53351044-53351063 None:intergenic 50.0%
GTGGACTCTCTTGGGAACTT+GGG + chr8_2:53351163-53351182 Msa1254970:five_prime_UTR 50.0%
TGGACTCTCTTGGGAACTTG+GGG + chr8_2:53351164-53351183 Msa1254970:five_prime_UTR 50.0%
! GTGAGACACGAACCAGGTTT+TGG + chr8_2:53351926-53351945 Msa1254970:five_prime_UTR 50.0%
CTGTTCGAAAGAGCTAGGAC+AGG - chr8_2:53352121-53352140 None:intergenic 50.0%
! CTGTCCTAGCTCTTTCGAAC+AGG + chr8_2:53352119-53352138 Msa1254970:five_prime_UTR 50.0%
ATAGCAAAGCGTGGCTGTTG+AGG - chr8_2:53352910-53352929 None:intergenic 50.0%
! TCTCTGGGTGAAAAGTGCGA+TGG + chr8_2:53353049-53353068 Msa1254970:CDS 50.0%
! TGGGTGAAAAGTGCGATGGA+TGG + chr8_2:53353053-53353072 Msa1254970:CDS 50.0%
! TAAGAGTTGATTCCACGCCC+TGG - chr8_2:53353187-53353206 None:intergenic 50.0%
GAAGCCAAGCTAACATGGAG+TGG - chr8_2:53353246-53353265 None:intergenic 50.0%
GGCATGATGCAGAAGCCTTA+TGG + chr8_2:53354425-53354444 Msa1254970:CDS 50.0%
! GCAGAAGCCTTATGGTTTGC+AGG + chr8_2:53354433-53354452 Msa1254970:CDS 50.0%
! GAAGCCTTATGGTTTGCAGG+GGG + chr8_2:53354436-53354455 Msa1254970:CDS 50.0%
! AAGCCTTATGGTTTGCAGGG+GGG + chr8_2:53354437-53354456 Msa1254970:CDS 50.0%
GGGTCAGATTTCACGGTTGA+AGG - chr8_2:53354520-53354539 None:intergenic 50.0%
TCAACCGTGAAATCTGACCC+TGG + chr8_2:53354520-53354539 Msa1254970:CDS 50.0%
CAACCGTGAAATCTGACCCT+GGG + chr8_2:53354521-53354540 Msa1254970:CDS 50.0%
CATCCCAGGGTCAGATTTCA+CGG - chr8_2:53354527-53354546 None:intergenic 50.0%
AATGTGAAGACGGCATCCCA+GGG - chr8_2:53354540-53354559 None:intergenic 50.0%
CACCATTACCAGCAGTTGCT+TGG + chr8_2:53355410-53355429 Msa1254970:CDS 50.0%
AGCCAAGCAACTGCTGGTAA+TGG - chr8_2:53355415-53355434 None:intergenic 50.0%
TACCAGCAGTTGCTTGGCTT+TGG + chr8_2:53355416-53355435 Msa1254970:CDS 50.0%
GATATCGCTCAGTGGTTGAG+TGG + chr8_2:53355829-53355848 Msa1254970:intron 50.0%
GGTTGAGTGGTGACATCCAA+AGG + chr8_2:53355842-53355861 Msa1254970:intron 50.0%
!! GTTCGAGTTGTAGGTGGCTT+GGG + chr8_2:53355942-53355961 Msa1254970:intron 50.0%
! GAAGTTTTTGTGACACCCGC+AGG - chr8_2:53356057-53356076 None:intergenic 50.0%
ACAGTGAGCCAAGTGGTTGT+TGG + chr8_2:53356079-53356098 Msa1254970:CDS 50.0%
TGGTTGTTGGAGCTGCTGTA+GGG + chr8_2:53356092-53356111 Msa1254970:CDS 50.0%
GGGTCTGCAGTACTTTGCTT+AGG + chr8_2:53356208-53356227 Msa1254970:CDS 50.0%
GTTGGCATAGCGCATAACAG+TGG - chr8_2:53356436-53356455 None:intergenic 50.0%
TCGTACGAGTCTGGTGCATG+TGG - chr8_2:53350836-53350855 None:intergenic 55.0%
! GGTGGACTCTCTTGGGAACT+TGG + chr8_2:53351162-53351181 Msa1254970:intron 55.0%
GGACTCTCTTGGGAACTTGG+GGG + chr8_2:53351165-53351184 Msa1254970:five_prime_UTR 55.0%
GACTCTCTTGGGAACTTGGG+GGG + chr8_2:53351166-53351185 Msa1254970:five_prime_UTR 55.0%
CAATGGCAGCTCCCTAAGGT+TGG - chr8_2:53354293-53354312 None:intergenic 55.0%
AGACCCCCCTGCAAACCATA+AGG - chr8_2:53354443-53354462 None:intergenic 55.0%
GAATGTGAAGACGGCATCCC+AGG - chr8_2:53354541-53354560 None:intergenic 55.0%
TGCCAAAGCCAAGCAACTGC+TGG - chr8_2:53355421-53355440 None:intergenic 55.0%
GTCCCCAAGATATCGCTCAG+TGG + chr8_2:53355821-53355840 Msa1254970:intron 55.0%
!! GGTTCGAGTTGTAGGTGGCT+TGG + chr8_2:53355941-53355960 Msa1254970:intron 55.0%
CAGCAGCTCCAACAACCACT+TGG - chr8_2:53356090-53356109 None:intergenic 55.0%
GTGGTTGTTGGAGCTGCTGT+AGG + chr8_2:53356091-53356110 Msa1254970:CDS 55.0%
GCGTGGCTGTTGAGGTCATG+TGG - chr8_2:53352902-53352921 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 53350350 53356510 53350350 ID=Msa1254970;Name=Msa1254970
chr8_2 mRNA 53350350 53356510 53350350 ID=Msa1254970-mRNA-1;Parent=Msa1254970;Name=Msa1254970-mRNA-1;_AED=0.20;_eAED=0.20;_QI=1112|1|1|1|0.6|0.66|6|237|283
chr8_2 exon 53350350 53350462 53350350 ID=Msa1254970-mRNA-1:exon:16461;Parent=Msa1254970-mRNA-1
chr8_2 exon 53351163 53352140 53351163 ID=Msa1254970-mRNA-1:exon:16462;Parent=Msa1254970-mRNA-1
chr8_2 exon 53352864 53353214 53352864 ID=Msa1254970-mRNA-1:exon:16463;Parent=Msa1254970-mRNA-1
chr8_2 exon 53354379 53354601 53354379 ID=Msa1254970-mRNA-1:exon:16464;Parent=Msa1254970-mRNA-1
chr8_2 exon 53355382 53355455 53355382 ID=Msa1254970-mRNA-1:exon:16465;Parent=Msa1254970-mRNA-1
chr8_2 exon 53356049 53356510 53356049 ID=Msa1254970-mRNA-1:exon:16466;Parent=Msa1254970-mRNA-1
chr8_2 five_prime_UTR 53350350 53350462 53350350 ID=Msa1254970-mRNA-1:five_prime_utr;Parent=Msa1254970-mRNA-1
chr8_2 five_prime_UTR 53351163 53352140 53351163 ID=Msa1254970-mRNA-1:five_prime_utr;Parent=Msa1254970-mRNA-1
chr8_2 five_prime_UTR 53352864 53352884 53352864 ID=Msa1254970-mRNA-1:five_prime_utr;Parent=Msa1254970-mRNA-1
chr8_2 CDS 53352885 53353214 53352885 ID=Msa1254970-mRNA-1:cds;Parent=Msa1254970-mRNA-1
chr8_2 CDS 53354379 53354601 53354379 ID=Msa1254970-mRNA-1:cds;Parent=Msa1254970-mRNA-1
chr8_2 CDS 53355382 53355455 53355382 ID=Msa1254970-mRNA-1:cds;Parent=Msa1254970-mRNA-1
chr8_2 CDS 53356049 53356273 53356049 ID=Msa1254970-mRNA-1:cds;Parent=Msa1254970-mRNA-1
chr8_2 three_prime_UTR 53356274 53356510 53356274 ID=Msa1254970-mRNA-1:three_prime_utr;Parent=Msa1254970-mRNA-1
Gene Sequence

>Msa1254970

ATGCTGCAATCTTTCCACATGACCTCAACAGCCACGCTTTGCTATAATCCATCTAACAATTTTTTGAGGACAAATCAGCCTAAACAAAGATACTTGAAAAACAATTCATTTTCTCCTAGTTTATCTGCTTCAAGATCATTCACTTGTGGGTTTGTTCCTTTCAATCTCTGGGTGAAAAGTGCGATGGATGGATTTGTAAGAACTGCTCAGAGAGATGGAAAGAGTGATGGACATATTGAAGTGCTTGAACAAGAAGCTTTCGTTGATAGGTCATCTGAGTCTGAGCCAAAGTTTTTGTTCCAGGGCGTGGAATCAACTCTTAATCGACTGAGCAAGTGGATAGTAAGTGCCCTCTTTGGTGTTTTTGTTATTTGGAGGCATGATGCAGAAGCCTTATGGTTTGCAGGGGGGTCTGTTTTGAATGCAATGCTTTCTGTTTTACTCAAACAACTACTTAATCAGAAACGACCTTCAACCGTGAAATCTGACCCTGGGATGCCGTCTTCACATTCTCAATCCATCTTCTTTGCTGTCATGTTTACTATCTTGTCAAGTGTTGAATTGTTAAGTATCAATGCACTCACCATTACCAGCAGTTGCTTGGCTTTGGCATTTGGTTCTTATTTGTCATACCTGCGGGTGTCACAAAAACTTCATACAGTGAGCCAAGTGGTTGTTGGAGCTGCTGTAGGGTCAACTTTCTCTATCTTGTGGTATTGGCTATGGAATGCATTTGTGCTGGATGCTTTTGTATCCTCTTTGTGGGTCAGAATCGTTGTTATTTTGGGGTCTGCAGTACTTTGCTTAGGTTTTCTTTTACATGTGGTTCGCAATTGGCTTAATGACGAATGA
Protein sequence

>Msa1254970

MLQSFHMTSTATLCYNPSNNFLRTNQPKQRYLKNNSFSPSLSASRSFTCGFVPFNLWVKSAMDGFVRTAQRDGKSDGHIEVLEQEAFVDRSSESEPKFLFQGVESTLNRLSKWIVSALFGVFVIWRHDAEALWFAGGSVLNAMLSVLLKQLLNQKRPSTVKSDPGMPSSHSQSIFFAVMFTILSSVELLSINALTITSSCLALAFGSYLSYLRVSQKLHTVSQVVVGAAVGSTFSILWYWLWNAFVLDAFVSSLWVRIVVILGSAVLCLGFLLHVVRNWLNDE*