AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1255360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255360 MtrunA17_Chr8g0373571 98.529 340 5 0 1 340 1 340 0.0 692
Msa1255360 MtrunA17_Chr8g0369161 41.019 373 157 15 9 330 17 377 7.30e-59 194
Msa1255360 MtrunA17_Chr5g0410531 40.212 378 161 15 3 327 10 375 9.49e-59 194
Msa1255360 MtrunA17_Chr7g0275321 37.644 348 166 14 30 340 32 365 9.49e-51 174
Msa1255360 MtrunA17_Chr8g0347741 35.574 357 192 12 1 328 1 348 2.82e-44 157
Msa1255360 MtrunA17_Chr1g0162721 30.606 330 173 12 19 339 19 301 3.70e-32 122
Msa1255360 MtrunA17_Chr4g0065261 43.750 80 44 1 260 339 91 169 1.64e-14 70.9
Msa1255360 MtrunA17_Chr3g0139301 45.070 71 39 0 260 330 124 194 4.95e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255360 AT4G36730.1 54.651 344 110 11 1 340 1 302 1.32e-105 312
Msa1255360 AT4G36730.2 54.094 342 113 10 1 340 1 300 3.45e-105 311
Msa1255360 AT2G35530.1 45.143 350 126 17 31 330 42 375 3.25e-67 217
Msa1255360 AT1G32150.1 41.734 369 151 14 4 327 13 362 6.60e-59 195
Msa1255360 AT2G46270.1 36.991 319 160 13 30 328 30 327 7.43e-38 139
Msa1255360 AT2G46270.3 36.991 319 160 13 30 328 30 327 7.43e-38 139
Msa1255360 AT2G46270.2 37.821 312 144 14 30 328 30 304 1.65e-36 135
Msa1255360 AT2G46270.4 37.821 312 144 14 30 328 30 304 1.65e-36 135
Msa1255360 AT4G01120.1 34.012 344 177 11 2 328 7 317 4.89e-36 134
Msa1255360 AT5G60830.1 33.607 122 60 2 212 327 30 136 4.44e-11 62.0
Msa1255360 AT3G30530.1 43.038 79 43 1 262 340 81 157 5.95e-11 61.2

Find 148 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTCTAAGCTGATCTTTA+TGG 0.175848 8_2:-53893312 Msa1255360:exon
TTTATTTAAGTTTCTGATTA+TGG 0.187718 8_2:-53894671 Msa1255360:five_prime_UTR
ATACAATTCTTTAATTATAT+TGG 0.233076 8_2:-53894324 Msa1255360:intron
TTAATATTGGAATGGACTTA+TGG 0.240590 8_2:-53891438 Msa1255360:CDS
ATCTGAAAACGATTCTATTA+AGG 0.259096 8_2:-53890406 Msa1255360:intron
CAATTACAGTTGAAGATTAA+TGG 0.272334 8_2:+53889920 None:intergenic
CCTGCAACTAATCTTAATAT+TGG 0.282424 8_2:-53891451 Msa1255360:CDS
AGGTTGATTGTGTCTCATTT+TGG 0.284919 8_2:+53891387 None:intergenic
CTTTCCACTCTCTCCTGCTT+TGG 0.297217 8_2:+53892152 None:intergenic
TCCCTTCAAACTCTGTGGTT+TGG 0.313210 8_2:+53892241 None:intergenic
ACCTGGCCTCCCCACATATA+AGG 0.315990 8_2:+53892659 None:intergenic
ATGTTTGAATTGATCATATA+GGG 0.330177 8_2:-53889753 Msa1255360:three_prime_UTR
TTTGACCTCATGCTTGTTGA+TGG 0.336878 8_2:-53891631 Msa1255360:intron
GTTTCTAAGCTGATCTTTAT+GGG 0.351598 8_2:-53893311 Msa1255360:exon
GATATGGTTGAAGTAGGTTT+TGG 0.352866 8_2:-53894507 Msa1255360:five_prime_UTR
AGCAACAGTTGAGGCATAAT+AGG 0.367655 8_2:+53892697 None:intergenic
ATTTCTCAGTCATCTGTTCC+TGG 0.375045 8_2:-53891493 Msa1255360:CDS
GCCCCTGGAGCTGGTGCACT+TGG 0.382891 8_2:-53891361 Msa1255360:CDS
GCTTAGAAACACTGCCCTTT+CGG 0.383213 8_2:+53893324 None:intergenic
CCAATATTAAGATTAGTTGC+AGG 0.386214 8_2:+53891451 None:intergenic
ACAAAAGAGGGTGGAAGCGC+TGG 0.388500 8_2:-53890493 Msa1255360:CDS
CTTTATTTGTTTGCTAGAAA+AGG 0.389702 8_2:-53894743 Msa1255360:five_prime_UTR
TCAAGGTTAGCAACTACTTC+AGG 0.401006 8_2:+53890111 None:intergenic
TTCCTCAGTGTCGGCTTTGG+TGG 0.407471 8_2:-53890072 Msa1255360:three_prime_UTR
GTGCTTAATTATACTTGCTT+AGG 0.414495 8_2:-53894550 Msa1255360:five_prime_UTR
CAACCTGGTGCCCCTGGAGC+TGG 0.416002 8_2:-53891370 Msa1255360:CDS
AGGAACAGATGACTGAGAAA+TGG 0.416041 8_2:+53891495 None:intergenic
TGCATGGAGGTTGACCAATC+TGG 0.418724 8_2:+53893118 None:intergenic
TTCCCAGGAGGGTACATTGC+AGG 0.419287 8_2:+53892510 None:intergenic
TCCTTATATGTGGGGAGGCC+AGG 0.420738 8_2:-53892660 Msa1255360:intron
TCACCAAGTGCACCAGCTCC+AGG 0.421772 8_2:+53891358 None:intergenic
CTGGTCTCTTAATTGAGAAT+AGG 0.430322 8_2:-53889982 Msa1255360:three_prime_UTR
ACTGTTGTTTGTTTCATTCA+AGG 0.431117 8_2:+53890094 None:intergenic
CACATATAAGGATGCGGAGT+TGG 0.432062 8_2:+53892671 None:intergenic
CTTCAACCATATCAAAATCT+TGG 0.434229 8_2:+53894517 None:intergenic
ATCGAGACAACAGGATTTCC+AGG 0.434892 8_2:+53891475 None:intergenic
TTGGTGTATACACCCTAAAA+AGG 0.437917 8_2:+53894821 None:intergenic
GTTATAATTTGTACCTATGC+TGG 0.439655 8_2:-53889881 Msa1255360:three_prime_UTR
CACAATCAACCTGGTGCCCC+TGG 0.439660 8_2:-53891376 Msa1255360:CDS
GAGAGTGGAAAGGCAGGATC+AGG 0.441081 8_2:-53892141 Msa1255360:CDS
GGAAAGGCAGGATCAGGTTC+AGG 0.442394 8_2:-53892135 Msa1255360:CDS
GCAACAGTTGAGGCATAATA+GGG 0.445311 8_2:+53892698 None:intergenic
CAGTTCCTCAGTGTCGGCTT+TGG 0.446251 8_2:-53890075 Msa1255360:three_prime_UTR
CATGTTTGAATTGATCATAT+AGG 0.446841 8_2:-53889754 Msa1255360:three_prime_UTR
ATTTAGGCCTACTATAATCC+TGG 0.458725 8_2:-53892734 Msa1255360:intron
GTTGCAGGCATCGAGACAAC+AGG 0.464141 8_2:+53891466 None:intergenic
GTCCCGTATGGCGCCATCAT+AGG 0.468831 8_2:+53892546 None:intergenic
GCTGATCTTTATGGGGACTA+AGG 0.469213 8_2:-53893303 Msa1255360:exon
CAAATAAAGAAAATTGACTA+AGG 0.469300 8_2:+53894757 None:intergenic
TGCTAGCGATGAAAACCAAC+AGG 0.473083 8_2:-53891971 Msa1255360:intron
TAGGGAGGTGGAGCGGCTCC+AGG 0.475517 8_2:+53892716 None:intergenic
TTATGGAATGCATCTTCTGC+TGG 0.478101 8_2:-53891421 Msa1255360:CDS
AATTAAGACAGTTCTGCAGC+TGG 0.482360 8_2:-53890023 Msa1255360:three_prime_UTR
TATCCTGCAATGTACCCTCC+TGG 0.485161 8_2:-53892513 Msa1255360:CDS
AGTAGTATTGTTCTGCGCGT+TGG 0.490521 8_2:+53891522 None:intergenic
TACATTGCAGGATACGGAAC+TGG 0.491024 8_2:+53892522 None:intergenic
GGGACCTGATGGAAAGGATA+AGG 0.491928 8_2:-53892217 Msa1255360:CDS
GAATCCTTATCCTTTCCATC+AGG 0.492059 8_2:+53892213 None:intergenic
TTGGTTCACTGATCTAAAAG+AGG 0.493772 8_2:-53894479 Msa1255360:five_prime_UTR
GGATATGATGGTTGTACTGT+TGG 0.495462 8_2:+53893139 None:intergenic
GCACCAGCTCCAGGGGCACC+AGG 0.496227 8_2:+53891367 None:intergenic
CAACTCCGCATCCTTATATG+TGG 0.499896 8_2:-53892670 Msa1255360:CDS
ATTTCTTCAGCATCCTATGA+TGG 0.501272 8_2:-53892559 Msa1255360:intron
GGAACAGATGACTGAGAAAT+GGG 0.502735 8_2:+53891496 None:intergenic
AAAATAAAAGAATGAAGCAT+TGG 0.505182 8_2:+53894802 None:intergenic
GTATTTGCAGAAGTGCCCTT+CGG 0.507206 8_2:+53892180 None:intergenic
GGATCAGGTTCAGGCAATGA+TGG 0.509231 8_2:-53892126 Msa1255360:CDS
CATCCTATGATGGCGCCATA+CGG 0.509674 8_2:-53892549 Msa1255360:CDS
GCAGGAGAGAGTGGAAAGGC+AGG 0.510414 8_2:-53892147 Msa1255360:CDS
CACCAAACCACAGAGTTTGA+AGG 0.513023 8_2:-53892243 Msa1255360:CDS
TAAAACATCTTCATCAACTC+AGG 0.518814 8_2:-53893258 Msa1255360:intron
ATCCTATGATGGCGCCATAC+GGG 0.519112 8_2:-53892548 Msa1255360:CDS
GTGGTTTGGTGCATAGCACT+TGG 0.519553 8_2:+53892255 None:intergenic
AACGCGCAGAACAATACTAC+TGG 0.528283 8_2:-53891520 Msa1255360:CDS
TACTAATTAAGCATATGATA+AGG 0.528647 8_2:+53894868 None:intergenic
TTATAACAAATTAAGTGTAA+AGG 0.528669 8_2:+53889897 None:intergenic
AACCACAGAGTTTGAAGGGA+AGG 0.532538 8_2:-53892238 Msa1255360:CDS
GGAGGGTACATTGCAGGATA+CGG 0.533311 8_2:+53892516 None:intergenic
AAAAGAAAATTAATTGGAGG+AGG 0.534209 8_2:-53894581 Msa1255360:five_prime_UTR
GGAATCAGCTAGAAACAAGA+AGG 0.536581 8_2:-53891659 Msa1255360:CDS
ATCCTGCAATGTACCCTCCT+GGG 0.538664 8_2:-53892512 Msa1255360:CDS
AACTCCGCATCCTTATATGT+GGG 0.541725 8_2:-53892669 Msa1255360:CDS
TGACTAACCACTACCATGCT+AGG 0.543160 8_2:+53892474 None:intergenic
TACAACCATCATATCCAGAT+TGG 0.544261 8_2:-53893132 Msa1255360:CDS
TCCCTTCCCTTCAAACTCTG+TGG 0.544638 8_2:+53892236 None:intergenic
CACCAAGTGCACCAGCTCCA+GGG 0.545672 8_2:+53891359 None:intergenic
TGCTCATCCTAGCATGGTAG+TGG 0.548395 8_2:-53892481 Msa1255360:intron
AGTGCCAAAGCAGGAGAGAG+TGG 0.548817 8_2:-53892156 Msa1255360:CDS
ATTGATCATATAGGGTGGAA+TGG 0.549001 8_2:-53889745 Msa1255360:three_prime_UTR
GCAAATACAAGTGCCAAAGC+AGG 0.553074 8_2:-53892165 Msa1255360:CDS
CAGTGGTGACAGTGGTTCAG+AGG 0.554290 8_2:-53892004 Msa1255360:CDS
CAAAAGAGGGTGGAAGCGCT+GGG 0.555238 8_2:-53890492 Msa1255360:CDS
TTTGAAGGGAAGGGACCTGA+TGG 0.556168 8_2:-53892228 Msa1255360:CDS
GATGGTTGTACTGTTGGTGT+TGG 0.556241 8_2:+53893145 None:intergenic
ACTAAATAGAAGTGCTTCAG+TGG 0.557768 8_2:+53889841 None:intergenic
GTCGTGTAAACAGGAAGAGT+TGG 0.557803 8_2:-53890148 Msa1255360:intron
GAAGAGTTGGAACGGTTGTG+TGG 0.569549 8_2:-53890135 Msa1255360:CDS
GTTGACCAATCTGGATATGA+TGG 0.570626 8_2:+53893127 None:intergenic
ATCAATTCAAACATGCCCTA+AGG 0.571864 8_2:+53889762 None:intergenic
ACCAAGTGCACCAGCTCCAG+GGG 0.573078 8_2:+53891360 None:intergenic
AGATTGGTCAACCTCCATGC+AGG 0.576648 8_2:-53893116 Msa1255360:intron
CATATGTTCCATTACCTGCA+TGG 0.578688 8_2:+53893102 None:intergenic
GGATGAGCATACATATTCCC+AGG 0.579201 8_2:+53892495 None:intergenic
GCGGTCAAGACTACGCAAGC+AGG 0.579234 8_2:-53891079 Msa1255360:intron
TTTCTAAGCTGATCTTTATG+GGG 0.579308 8_2:-53893310 Msa1255360:exon
AACTAATCTTAATATTGGAA+TGG 0.579722 8_2:-53891446 Msa1255360:CDS
AGTCTAATCGAGAGTCAGCT+AGG 0.579925 8_2:-53891101 Msa1255360:CDS
ATATAATAACTTACACGCAA+AGG 0.587062 8_2:-53894405 Msa1255360:five_prime_UTR
AGATATCAATACTTGATCAT+CGG 0.587152 8_2:-53893364 Msa1255360:five_prime_UTR
GTTGAGGCATAATAGGGAGG+TGG 0.593384 8_2:+53892704 None:intergenic
AGCGGCTCCAGGATTATAGT+AGG 0.600575 8_2:+53892727 None:intergenic
AAGAGTTGGAACGGTTGTGT+GGG 0.601166 8_2:-53890134 Msa1255360:CDS
GTGTGAAGAGCTACAAAAGA+GGG 0.605519 8_2:-53890505 Msa1255360:CDS
ACCAAACCACAGAGTTTGAA+GGG 0.606609 8_2:-53892242 Msa1255360:CDS
AGGGAAGGGACCTGATGGAA+AGG 0.608864 8_2:-53892223 Msa1255360:CDS
AGTGGTGACAGTGGTTCAGA+GGG 0.609578 8_2:-53892003 Msa1255360:CDS
ACCACAGAGTTTGAAGGGAA+GGG 0.611703 8_2:-53892237 Msa1255360:CDS
CCTCCCCACATATAAGGATG+CGG 0.614767 8_2:+53892665 None:intergenic
CATATTCTATTCTCCAGCAT+AGG 0.619694 8_2:+53889868 None:intergenic
GAATCAGCTAGAAACAAGAA+GGG 0.620018 8_2:-53891658 Msa1255360:CDS
TTTGAATTGATCATATAGGG+TGG 0.620549 8_2:-53889750 Msa1255360:three_prime_UTR
GATCTTTATGGGGACTAAGG+AGG 0.620612 8_2:-53893300 Msa1255360:exon
TATGTATGCTCATCCTAGCA+TGG 0.624800 8_2:-53892487 Msa1255360:CDS
AAACAACAGTTCCTCAGTGT+CGG 0.625553 8_2:-53890081 Msa1255360:three_prime_UTR
TGCTGGAGAATAGAATATGT+AGG 0.627024 8_2:-53889864 Msa1255360:three_prime_UTR
AAGAAAGTTAGCATCTTCTG+TGG 0.627681 8_2:-53894431 Msa1255360:five_prime_UTR
AAATAAAGAAAATTGACTAA+GGG 0.629014 8_2:+53894758 None:intergenic
AGTGTGAAGAGCTACAAAAG+AGG 0.632849 8_2:-53890506 Msa1255360:CDS
CAAAGCAGGAGAGAGTGGAA+AGG 0.636173 8_2:-53892151 Msa1255360:CDS
TCCTTAAACAGTGGTGACAG+TGG 0.636548 8_2:-53892012 Msa1255360:intron
TGAAGAGCTACAAAAGAGGG+TGG 0.643369 8_2:-53890502 Msa1255360:CDS
CTGGTGCACTTGGTGAACAG+TGG 0.647119 8_2:-53891351 Msa1255360:CDS
CCGCATCCTTATATGTGGGG+AGG 0.647725 8_2:-53892665 Msa1255360:CDS
GGCATAATAGGGAGGTGGAG+CGG 0.650234 8_2:+53892709 None:intergenic
AGTTGGTGAAGCAACAGTTG+AGG 0.657295 8_2:+53892688 None:intergenic
AAAATGAGACACAATCAACC+TGG 0.657620 8_2:-53891385 Msa1255360:CDS
TCAAGTATTGATATCTGAGG+AGG 0.659197 8_2:+53893371 None:intergenic
GTAAACAGGAAGAGTTGGAA+CGG 0.665668 8_2:-53890143 Msa1255360:intron
TGATCAAGTATTGATATCTG+AGG 0.675678 8_2:+53893368 None:intergenic
ACTCCGCATCCTTATATGTG+GGG 0.679847 8_2:-53892668 Msa1255360:CDS
GAGCATACATATTCCCAGGA+GGG 0.682181 8_2:+53892499 None:intergenic
ACATACCATCAACAAGCATG+AGG 0.688310 8_2:+53891626 None:intergenic
ATGTTCCATTACCTGCATGG+AGG 0.690307 8_2:+53893105 None:intergenic
ACAGTTGAGGCATAATAGGG+AGG 0.694953 8_2:+53892701 None:intergenic
CGCCACCAAAGCCGACACTG+AGG 0.709401 8_2:+53890070 None:intergenic
AAGAGGGTGGAAGCGCTGGG+AGG 0.717810 8_2:-53890489 Msa1255360:CDS
TGAGCATACATATTCCCAGG+AGG 0.720547 8_2:+53892498 None:intergenic
CTAATCGAGAGTCAGCTAGG+CGG 0.772559 8_2:-53891098 Msa1255360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTTTTTTCATATATT+TGG - chr8_2:53889799-53889818 Msa1255360:three_prime_UTR 10.0%
!!! TTTTCTTTTTTCATATATTT+GGG - chr8_2:53889800-53889819 Msa1255360:three_prime_UTR 10.0%
!! AATCAAAAAAGAAAATTAAT+TGG - chr8_2:53889995-53890014 Msa1255360:three_prime_UTR 10.0%
!! ATACAATTCTTTAATTATAT+TGG - chr8_2:53890258-53890277 Msa1255360:intron 10.0%
!!! TATATTTTTATATGTTGTTT+AGG - chr8_2:53893632-53893651 Msa1255360:intron 10.0%
!!! TTTTTACATATACCTTTTTA+GGG - chr8_2:53889749-53889768 Msa1255360:three_prime_UTR 15.0%
!! AAATAAAGAAAATTGACTAA+GGG + chr8_2:53889827-53889846 None:intergenic 15.0%
!!! TTTATTTAAGTTTCTGATTA+TGG - chr8_2:53889911-53889930 Msa1255360:three_prime_UTR 15.0%
!!! ATTATAATTTTTTTGGCTTT+TGG - chr8_2:53889949-53889968 Msa1255360:three_prime_UTR 15.0%
!!! TTATAATTTTTTTGGCTTTT+GGG - chr8_2:53889950-53889969 Msa1255360:three_prime_UTR 15.0%
!! ACAATTATAATTATCTTCTT+TGG + chr8_2:53890382-53890401 None:intergenic 15.0%
!! GAAGATAATTATAATTGTAT+AGG - chr8_2:53890384-53890403 Msa1255360:intron 15.0%
!! ATTGTATAGGTTATATTAAA+TGG - chr8_2:53890397-53890416 Msa1255360:intron 15.0%
!!! AAACGAAAAATAATTGTTTT+GGG + chr8_2:53890424-53890443 None:intergenic 15.0%
!!! CTTTTGAAAACAATTAATAA+TGG - chr8_2:53890640-53890659 Msa1255360:intron 15.0%
!!! AATCTTACTAATTTTGATTA+TGG + chr8_2:53890966-53890985 None:intergenic 15.0%
!! ATGCAAAATTATAAACTAAA+TGG + chr8_2:53891057-53891076 None:intergenic 15.0%
!! AAATCGTATATGAATATATT+AGG + chr8_2:53891356-53891375 None:intergenic 15.0%
!! AATGATAAGAAAATATATGA+GGG + chr8_2:53891394-53891413 None:intergenic 15.0%
!! AAATGATAAGAAAATATATG+AGG + chr8_2:53891395-53891414 None:intergenic 15.0%
!!! CATATATTTTCTTATCATTT+CGG - chr8_2:53891395-53891414 Msa1255360:CDS 15.0%
!!! TTTTTTTCTCAAATTATTAC+CGG + chr8_2:53892716-53892735 None:intergenic 15.0%
!!! AATAAAGCTTTAGATTTAAA+TGG - chr8_2:53893894-53893913 Msa1255360:intron 15.0%
!!! TATTTTTTACTGAAGTAAAA+TGG + chr8_2:53894023-53894042 None:intergenic 15.0%
!! TTATAACAAATTAAGTGTAA+AGG + chr8_2:53894688-53894707 None:intergenic 15.0%
!! TACTAATTAAGCATATGATA+AGG + chr8_2:53889717-53889736 None:intergenic 20.0%
!!! CTTTTTACATATACCTTTTT+AGG - chr8_2:53889748-53889767 Msa1255360:three_prime_UTR 20.0%
!! AAAATAAAAGAATGAAGCAT+TGG + chr8_2:53889783-53889802 None:intergenic 20.0%
!! CAAATAAAGAAAATTGACTA+AGG + chr8_2:53889828-53889847 None:intergenic 20.0%
!! CAAAAAAGAAAATTAATTGG+AGG - chr8_2:53889998-53890017 Msa1255360:three_prime_UTR 20.0%
!!! ATTTTACCAAGATTTTGATA+TGG - chr8_2:53890059-53890078 Msa1255360:three_prime_UTR 20.0%
!!! TTTGCTGTGATTTTTTTTTT+AGG - chr8_2:53890207-53890226 Msa1255360:intron 20.0%
!! TGTATAGAAGAGAAAAATAA+GGG - chr8_2:53890230-53890249 Msa1255360:intron 20.0%
!!! AAAGCACTAATAGAAAATAT+AGG + chr8_2:53890299-53890318 None:intergenic 20.0%
!!! CAAACGAAAAATAATTGTTT+TGG + chr8_2:53890425-53890444 None:intergenic 20.0%
!!! CAAAACAATTATTTTTCGTT+TGG - chr8_2:53890423-53890442 Msa1255360:CDS 20.0%
!!! TTTGCATTAGATTTTATAGT+TGG - chr8_2:53891070-53891089 Msa1255360:intron 20.0%
!! TTATAAAAATAAGCTGAACA+TGG - chr8_2:53891712-53891731 Msa1255360:intron 20.0%
!! CTAGCAAAATGATAAAAATA+AGG + chr8_2:53892304-53892323 None:intergenic 20.0%
!! ATTAAGAATGAAAATTGAAG+AGG + chr8_2:53892538-53892557 None:intergenic 20.0%
!!! AATTTTATATCCTTAAACAG+TGG - chr8_2:53892561-53892580 Msa1255360:intron 20.0%
!!! AAGTATCTTTTTTTTTTTCG+CGG - chr8_2:53892999-53893018 Msa1255360:intron 20.0%
!! AACTAATCTTAATATTGGAA+TGG - chr8_2:53893136-53893155 Msa1255360:CDS 20.0%
!! TGAATAATATAACTCATACT+TGG + chr8_2:53893610-53893629 None:intergenic 20.0%
!! AAGATATAAAAGACCTAATA+AGG - chr8_2:53893666-53893685 Msa1255360:intron 20.0%
!! ATGTTTGAATTGATCATATA+GGG - chr8_2:53894829-53894848 Msa1255360:five_prime_UTR 20.0%
!! CTTTATTTGTTTGCTAGAAA+AGG - chr8_2:53889839-53889858 Msa1255360:three_prime_UTR 25.0%
! AAAAGAAAATTAATTGGAGG+AGG - chr8_2:53890001-53890020 Msa1255360:three_prime_UTR 25.0%
! ATATAATAACTTACACGCAA+AGG - chr8_2:53890177-53890196 Msa1255360:intron 25.0%
! GTGTATAGAAGAGAAAAATA+AGG - chr8_2:53890229-53890248 Msa1255360:intron 25.0%
! GTATAGAAGAGAAAAATAAG+GGG - chr8_2:53890231-53890250 Msa1255360:intron 25.0%
! ATTAGTGCTTTCAAAAAGTT+AGG - chr8_2:53890308-53890327 Msa1255360:intron 25.0%
!!! TTATTTTTCGTTTGGAAACT+TGG - chr8_2:53890431-53890450 Msa1255360:CDS 25.0%
! AATCATCCTTTGTATTGTAT+AGG - chr8_2:53890857-53890876 Msa1255360:intron 25.0%
! TTTAACTACATACTTTGTAG+AGG + chr8_2:53891016-53891035 None:intergenic 25.0%
! AGATATCAATACTTGATCAT+CGG - chr8_2:53891218-53891237 Msa1255360:intron 25.0%
! AGACAAACTATAATTCTGTT+TGG - chr8_2:53891545-53891564 Msa1255360:intron 25.0%
!!! GCTATTTTTATAAGCTATTC+CGG - chr8_2:53891684-53891703 Msa1255360:intron 25.0%
! TAGTCATCAGTTACATAATA+GGG + chr8_2:53891821-53891840 None:intergenic 25.0%
! GCAATTATTATACTCTATGT+CGG - chr8_2:53891973-53891992 Msa1255360:CDS 25.0%
!! TGATGTATTAACATTTTTCC+AGG - chr8_2:53892205-53892224 Msa1255360:CDS 25.0%
! TTGAATGTAAATGCATTTGT+CGG - chr8_2:53892744-53892763 Msa1255360:intron 25.0%
! CAAAAATACATACAGAAAAC+TGG + chr8_2:53892880-53892899 None:intergenic 25.0%
!! CAGTTTTCTGTATGTATTTT+TGG - chr8_2:53892878-53892897 Msa1255360:intron 25.0%
! AAAAAGATACTTACGATTAC+AGG + chr8_2:53892991-53893010 None:intergenic 25.0%
!! TTAATATTGGAATGGACTTA+TGG - chr8_2:53893144-53893163 Msa1255360:CDS 25.0%
! TTTCGATCTTTGTGTTTATA+TGG - chr8_2:53893324-53893343 Msa1255360:five_prime_UTR 25.0%
! TAATTAATGAACCACTAACT+TGG + chr8_2:53893575-53893594 None:intergenic 25.0%
! AGACAAAATTTATAATCCTG+AGG - chr8_2:53893926-53893945 Msa1255360:intron 25.0%
! ATCTGAAAACGATTCTATTA+AGG - chr8_2:53894176-53894195 Msa1255360:intron 25.0%
! CAATTACAGTTGAAGATTAA+TGG + chr8_2:53894665-53894684 None:intergenic 25.0%
! CATGTTTGAATTGATCATAT+AGG - chr8_2:53894828-53894847 Msa1255360:five_prime_UTR 25.0%
CATATGATAAGGTCCAAAAA+TGG + chr8_2:53889706-53889725 None:intergenic 30.0%
GTGCTTAATTATACTTGCTT+AGG - chr8_2:53890032-53890051 Msa1255360:three_prime_UTR 30.0%
CTTCAACCATATCAAAATCT+TGG + chr8_2:53890068-53890087 None:intergenic 30.0%
!! GATTTTGATATGGTTGAAGT+AGG - chr8_2:53890069-53890088 Msa1255360:three_prime_UTR 30.0%
ATGACAAGATTAGTAGTTGA+TGG - chr8_2:53890342-53890361 Msa1255360:intron 30.0%
! TGTTATTTGTCTTCCTTTAG+TGG - chr8_2:53890822-53890841 Msa1255360:intron 30.0%
GTTATTTGTCTTCCTTTAGT+GGG - chr8_2:53890823-53890842 Msa1255360:intron 30.0%
TACAATTATACGTTACGACT+CGG - chr8_2:53890920-53890939 Msa1255360:intron 30.0%
TCAAATAGTAGCAACTATCA+AGG + chr8_2:53891099-53891118 None:intergenic 30.0%
!! TGATCAAGTATTGATATCTG+AGG + chr8_2:53891217-53891236 None:intergenic 30.0%
! TGTTTCTAAGCTGATCTTTA+TGG - chr8_2:53891270-53891289 Msa1255360:intron 30.0%
GTTTCTAAGCTGATCTTTAT+GGG - chr8_2:53891271-53891290 Msa1255360:intron 30.0%
TTTCTAAGCTGATCTTTATG+GGG - chr8_2:53891272-53891291 Msa1255360:intron 30.0%
!! GTTGATGAAGATGTTTTAGA+AGG + chr8_2:53891322-53891341 None:intergenic 30.0%
TAAAACATCTTCATCAACTC+AGG - chr8_2:53891324-53891343 Msa1255360:intron 30.0%
!!! GCTTATTTTTATAAGCTCTC+CGG + chr8_2:53891706-53891725 None:intergenic 30.0%
CTAGTCATCAGTTACATAAT+AGG + chr8_2:53891822-53891841 None:intergenic 30.0%
!! TGATGACTAGCTTCTTATTT+AGG - chr8_2:53891832-53891851 Msa1255360:intron 30.0%
GTAAATGTTGTCCATCATTT+AGG - chr8_2:53891944-53891963 Msa1255360:intron 30.0%
ATTGCATACATCCTAAATGA+TGG + chr8_2:53891958-53891977 None:intergenic 30.0%
ATACATCATGTATAAGCAGA+TGG + chr8_2:53892193-53892212 None:intergenic 30.0%
TTGCCACGTTTATCAAAATT+TGG - chr8_2:53892236-53892255 Msa1255360:CDS 30.0%
!! ATGCCAAATTTTGATAAACG+TGG + chr8_2:53892242-53892261 None:intergenic 30.0%
GATTCATCTAAAAAACCGAA+GGG - chr8_2:53892387-53892406 Msa1255360:intron 30.0%
AACGATCTCAAATAAACAAG+AGG + chr8_2:53892504-53892523 None:intergenic 30.0%
AAGACACATACTCATATTGA+AGG + chr8_2:53892803-53892822 None:intergenic 30.0%
! CCAATATTAAGATTAGTTGC+AGG + chr8_2:53893134-53893153 None:intergenic 30.0%
CCTGCAACTAATCTTAATAT+TGG - chr8_2:53893131-53893150 Msa1255360:CDS 30.0%
AAGGAAGTTATACAAAGGTA+AGG + chr8_2:53893398-53893417 None:intergenic 30.0%
TGTTGAAGGAAGTTATACAA+AGG + chr8_2:53893403-53893422 None:intergenic 30.0%
!! GTAAGCTTTGGAAATATACT+TGG - chr8_2:53893525-53893544 Msa1255360:intron 30.0%
TTTAGGTATCAAATAACCTC+AGG + chr8_2:53893945-53893964 None:intergenic 30.0%
!!! CTTTTTCAACTAAGTCATGT+TGG + chr8_2:53893976-53893995 None:intergenic 30.0%
CAACATGACTTAGTTGAAAA+AGG - chr8_2:53893974-53893993 Msa1255360:intron 30.0%
CTATTCTGCCTTAAATTTAC+TGG - chr8_2:53894212-53894231 Msa1255360:intron 30.0%
GTAGACAACCAGTAAATTTA+AGG + chr8_2:53894223-53894242 None:intergenic 30.0%
ATATTACAACTCACAATCTG+AGG - chr8_2:53894404-53894423 Msa1255360:five_prime_UTR 30.0%
! ACTGTTGTTTGTTTCATTCA+AGG + chr8_2:53894491-53894510 None:intergenic 30.0%
! GTTATAATTTGTACCTATGC+TGG - chr8_2:53894701-53894720 Msa1255360:five_prime_UTR 30.0%
GGTAGTGAAAATCGAAAAAT+TGG + chr8_2:53894802-53894821 None:intergenic 30.0%
! TTTTCGATTTTCACTACCTT+AGG - chr8_2:53894804-53894823 Msa1255360:five_prime_UTR 30.0%
! TTTCGATTTTCACTACCTTA+GGG - chr8_2:53894805-53894824 Msa1255360:five_prime_UTR 30.0%
TTTGAATTGATCATATAGGG+TGG - chr8_2:53894832-53894851 Msa1255360:five_prime_UTR 30.0%
TTGGTGTATACACCCTAAAA+AGG + chr8_2:53889764-53889783 None:intergenic 35.0%
! GATATGGTTGAAGTAGGTTT+TGG - chr8_2:53890075-53890094 Msa1255360:three_prime_UTR 35.0%
TTGGTTCACTGATCTAAAAG+AGG - chr8_2:53890103-53890122 Msa1255360:exon 35.0%
AAGAAAGTTAGCATCTTCTG+TGG - chr8_2:53890151-53890170 Msa1255360:intron 35.0%
!! AAGATTAGTAGTTGATGGCA+TGG - chr8_2:53890347-53890366 Msa1255360:intron 35.0%
! ACTTTGCTCTAGCTTCAATT+GGG + chr8_2:53890516-53890535 None:intergenic 35.0%
GTCTCAGGTTCAAAAACTAA+TGG + chr8_2:53890575-53890594 None:intergenic 35.0%
TTCAAAAGACAGTTGTGTGT+TGG + chr8_2:53890628-53890647 None:intergenic 35.0%
CATCCTTTGTATTGTATAGG+AGG - chr8_2:53890860-53890879 Msa1255360:intron 35.0%
CATCCTCCTATACAATACAA+AGG + chr8_2:53890866-53890885 None:intergenic 35.0%
CTTTGTATTGTATAGGAGGA+TGG - chr8_2:53890864-53890883 Msa1255360:intron 35.0%
!! TCGGTATTTGAAGTCGTTTT+TGG - chr8_2:53890939-53890958 Msa1255360:intron 35.0%
!! TCAAGTATTGATATCTGAGG+AGG + chr8_2:53891214-53891233 None:intergenic 35.0%
! TGATCATCGGTCTTTTTGTT+TGG - chr8_2:53891231-53891250 Msa1255360:intron 35.0%
TACAACCATCATATCCAGAT+TGG - chr8_2:53891450-53891469 Msa1255360:CDS 35.0%
ATTTAGGCCTACTATAATCC+TGG - chr8_2:53891848-53891867 Msa1255360:intron 35.0%
!! AATGATGGACAACATTTACC+TGG + chr8_2:53891943-53891962 None:intergenic 35.0%
ATTTCTTCAGCATCCTATGA+TGG - chr8_2:53892023-53892042 Msa1255360:intron 35.0%
GGATTCATCTAAAAAACCGA+AGG - chr8_2:53892386-53892405 Msa1255360:intron 35.0%
GTAATCTGTCATATACCTGT+TGG + chr8_2:53892629-53892648 None:intergenic 35.0%
TTCTCAAATTATTACCGGTG+TGG + chr8_2:53892711-53892730 None:intergenic 35.0%
TGGTCTAATGACTTCTATCT+TGG - chr8_2:53892898-53892917 Msa1255360:intron 35.0%
CTAATGACTTCTATCTTGGT+AGG - chr8_2:53892902-53892921 Msa1255360:intron 35.0%
GAATCAGCTAGAAACAAGAA+GGG - chr8_2:53892924-53892943 Msa1255360:intron 35.0%
TTAGTGTTTCCATGAACTTC+AGG - chr8_2:53893035-53893054 Msa1255360:intron 35.0%
! TTGATTGTGTCTCATTTTGG+CGG + chr8_2:53893195-53893214 None:intergenic 35.0%
!! AGGTTGATTGTGTCTCATTT+TGG + chr8_2:53893198-53893217 None:intergenic 35.0%
AAAATGAGACACAATCAACC+TGG - chr8_2:53893197-53893216 Msa1255360:intron 35.0%
CTATCAAGATCAGACACATT+AGG + chr8_2:53893427-53893446 None:intergenic 35.0%
CTAATGTGTCTGATCTTGAT+AGG - chr8_2:53893425-53893444 Msa1255360:five_prime_UTR 35.0%
AGTTTCCTATTGGACAACTA+CGG + chr8_2:53893862-53893881 None:intergenic 35.0%
TAGTTGTCCAATAGGAAACT+AGG - chr8_2:53893862-53893881 Msa1255360:intron 35.0%
AGTTTGACCTAGTTTCCTAT+TGG + chr8_2:53893872-53893891 None:intergenic 35.0%
! TCATGTTGGCTACATAGTTT+AGG + chr8_2:53893962-53893981 None:intergenic 35.0%
TTGCATTTCTTGTACCAACT+AGG - chr8_2:53894050-53894069 Msa1255360:intron 35.0%
CTGGTCTCTTAATTGAGAAT+AGG - chr8_2:53894600-53894619 Msa1255360:five_prime_UTR 35.0%
CATATTCTATTCTCCAGCAT+AGG + chr8_2:53894717-53894736 None:intergenic 35.0%
TGCTGGAGAATAGAATATGT+AGG - chr8_2:53894718-53894737 Msa1255360:five_prime_UTR 35.0%
!! ACTAAATAGAAGTGCTTCAG+TGG + chr8_2:53894744-53894763 None:intergenic 35.0%
ATCAATTCAAACATGCCCTA+AGG + chr8_2:53894823-53894842 None:intergenic 35.0%
ATTGATCATATAGGGTGGAA+TGG - chr8_2:53894837-53894856 Msa1255360:five_prime_UTR 35.0%
!!! GAAGTAGGTTTTGGTTGCTT+TGG - chr8_2:53890084-53890103 Msa1255360:three_prime_UTR 40.0%
TCGTTTGGAAACTTGGTATC+CGG - chr8_2:53890438-53890457 Msa1255360:CDS 40.0%
CACGAGTACCAACTAATCTA+GGG - chr8_2:53890461-53890480 Msa1255360:CDS 40.0%
ACGAGTACCAACTAATCTAG+GGG - chr8_2:53890462-53890481 Msa1255360:CDS 40.0%
! GACTTTGCTCTAGCTTCAAT+TGG + chr8_2:53890517-53890536 None:intergenic 40.0%
TTCCTTTAGTGGGAGATGAA+TGG - chr8_2:53890833-53890852 Msa1255360:intron 40.0%
TTCCATTCATCTCCCACTAA+AGG + chr8_2:53890838-53890857 None:intergenic 40.0%
!!! TTTTTGTTTGGTGCACCGAA+AGG - chr8_2:53891243-53891262 Msa1255360:intron 40.0%
!!! TTTTGTTTGGTGCACCGAAA+GGG - chr8_2:53891244-53891263 Msa1255360:intron 40.0%
! TCATTTCGGTTTGCACAAAC+AGG - chr8_2:53891409-53891428 Msa1255360:CDS 40.0%
GGATATGATGGTTGTACTGT+TGG + chr8_2:53891446-53891465 None:intergenic 40.0%
GTTGACCAATCTGGATATGA+TGG + chr8_2:53891458-53891477 None:intergenic 40.0%
CATATGTTCCATTACCTGCA+TGG + chr8_2:53891483-53891502 None:intergenic 40.0%
AAGCACTTGTGTGACTGTTT+GGG + chr8_2:53891759-53891778 None:intergenic 40.0%
TAAGCACTTGTGTGACTGTT+TGG + chr8_2:53891760-53891779 None:intergenic 40.0%
GCAACAGTTGAGGCATAATA+GGG + chr8_2:53891887-53891906 None:intergenic 40.0%
AGCAACAGTTGAGGCATAAT+AGG + chr8_2:53891888-53891907 None:intergenic 40.0%
AACTCCGCATCCTTATATGT+GGG - chr8_2:53891913-53891932 Msa1255360:intron 40.0%
TATGTATGCTCATCCTAGCA+TGG - chr8_2:53892095-53892114 Msa1255360:intron 40.0%
ACCAAACCACAGAGTTTGAA+GGG - chr8_2:53892340-53892359 Msa1255360:intron 40.0%
GAATCCTTATCCTTTCCATC+AGG + chr8_2:53892372-53892391 None:intergenic 40.0%
! GCAATGATGGCTTTTCACAT+AGG - chr8_2:53892469-53892488 Msa1255360:intron 40.0%
! GATGGCTTTTCACATAGGTT+TGG - chr8_2:53892474-53892493 Msa1255360:intron 40.0%
! AATGAGAGCACATGTAACGA+TGG + chr8_2:53892651-53892670 None:intergenic 40.0%
GGAATCAGCTAGAAACAAGA+AGG - chr8_2:53892923-53892942 Msa1255360:intron 40.0%
! TTTGACCTCATGCTTGTTGA+TGG - chr8_2:53892951-53892970 Msa1255360:intron 40.0%
ACATACCATCAACAAGCATG+AGG + chr8_2:53892959-53892978 None:intergenic 40.0%
GATACTTACGATTACAGGTG+AGG + chr8_2:53892986-53893005 None:intergenic 40.0%
GGAACAGATGACTGAGAAAT+GGG + chr8_2:53893089-53893108 None:intergenic 40.0%
AGGAACAGATGACTGAGAAA+TGG + chr8_2:53893090-53893109 None:intergenic 40.0%
ATTTCTCAGTCATCTGTTCC+TGG - chr8_2:53893089-53893108 Msa1255360:intron 40.0%
TTATGGAATGCATCTTCTGC+TGG - chr8_2:53893161-53893180 Msa1255360:intron 40.0%
AACAGTGGATGCAACAAGTA+TGG - chr8_2:53893246-53893265 Msa1255360:intron 40.0%
TGTTCTGTTCTCGTATTGCT+CGG - chr8_2:53893294-53893313 Msa1255360:CDS 40.0%
CAGACACATTAGGATGTTGA+AGG + chr8_2:53893417-53893436 None:intergenic 40.0%
! ATATACTTGGTTCTCCCTTG+AGG - chr8_2:53893538-53893557 Msa1255360:intron 40.0%
ATAACACTGAGCCAAGTTAG+TGG - chr8_2:53893561-53893580 Msa1255360:intron 40.0%
TCGGATCTACTCTCCTTATT+AGG + chr8_2:53893682-53893701 None:intergenic 40.0%
TACATGATCTGGGTTGCTAT+CGG + chr8_2:53893701-53893720 None:intergenic 40.0%
TGGATGGCTATACATGATCT+GGG + chr8_2:53893711-53893730 None:intergenic 40.0%
TTGGATGGCTATACATGATC+TGG + chr8_2:53893712-53893731 None:intergenic 40.0%
ATCATGTATAGCCATCCAAC+TGG - chr8_2:53893713-53893732 Msa1255360:intron 40.0%
CAACATTGATCCAACAACTG+AGG - chr8_2:53893768-53893787 Msa1255360:intron 40.0%
TTGATCCAACAACTGAGGTT+TGG - chr8_2:53893773-53893792 Msa1255360:intron 40.0%
!! GTTTGGTTGGACTAGTTAGA+TGG - chr8_2:53893790-53893809 Msa1255360:intron 40.0%
TAGATGGCAATAGCCTATAG+AGG - chr8_2:53893806-53893825 Msa1255360:intron 40.0%
CAATAGCCTATAGAGGATCT+GGG - chr8_2:53893813-53893832 Msa1255360:intron 40.0%
TTTCCTATTGGACAACTACG+GGG + chr8_2:53893860-53893879 None:intergenic 40.0%
GTTTCCTATTGGACAACTAC+GGG + chr8_2:53893861-53893880 None:intergenic 40.0%
AGTGTGAAGAGCTACAAAAG+AGG - chr8_2:53894076-53894095 Msa1255360:intron 40.0%
GTGTGAAGAGCTACAAAAGA+GGG - chr8_2:53894077-53894096 Msa1255360:intron 40.0%
CCTCAGATTGAATGTGTGTT+CGG + chr8_2:53894355-53894374 None:intergenic 40.0%
! ACACATTCAATCTGAGGTGT+CGG - chr8_2:53894358-53894377 Msa1255360:five_prime_UTR 40.0%
GTAAACAGGAAGAGTTGGAA+CGG - chr8_2:53894439-53894458 Msa1255360:five_prime_UTR 40.0%
TCAAGGTTAGCAACTACTTC+AGG + chr8_2:53894474-53894493 None:intergenic 40.0%
AAACAACAGTTCCTCAGTGT+CGG - chr8_2:53894501-53894520 Msa1255360:five_prime_UTR 40.0%
AATTAAGACAGTTCTGCAGC+TGG - chr8_2:53894559-53894578 Msa1255360:five_prime_UTR 40.0%
! AGCTGGACTTTTCAAATCAG+TGG - chr8_2:53894576-53894595 Msa1255360:five_prime_UTR 40.0%
! GACTTTTCAAATCAGTGGAC+TGG - chr8_2:53894581-53894600 Msa1255360:five_prime_UTR 40.0%
! AGATTAGTTGGTACTCGTGC+CGG + chr8_2:53890460-53890479 None:intergenic 45.0%
GCACGAGTACCAACTAATCT+AGG - chr8_2:53890460-53890479 Msa1255360:CDS 45.0%
GACTGATCCCCTAGATTAGT+TGG + chr8_2:53890472-53890491 None:intergenic 45.0%
TCAGTCTCATCGTTCACTAG+CGG - chr8_2:53890486-53890505 Msa1255360:CDS 45.0%
TTTGAACCTGAGACCTAGAG+AGG - chr8_2:53890581-53890600 Msa1255360:intron 45.0%
!! AAGACAGTTGTGTGTTGGCT+TGG + chr8_2:53890623-53890642 None:intergenic 45.0%
GCTTAGAAACACTGCCCTTT+CGG + chr8_2:53891261-53891280 None:intergenic 45.0%
GCTGATCTTTATGGGGACTA+AGG - chr8_2:53891279-53891298 Msa1255360:intron 45.0%
GATCTTTATGGGGACTAAGG+AGG - chr8_2:53891282-53891301 Msa1255360:intron 45.0%
GATGGTTGTACTGTTGGTGT+TGG + chr8_2:53891440-53891459 None:intergenic 45.0%
ATGTTCCATTACCTGCATGG+AGG + chr8_2:53891480-53891499 None:intergenic 45.0%
ACAGTTGAGGCATAATAGGG+AGG + chr8_2:53891884-53891903 None:intergenic 45.0%
!! AGTTGGTGAAGCAACAGTTG+AGG + chr8_2:53891897-53891916 None:intergenic 45.0%
CACATATAAGGATGCGGAGT+TGG + chr8_2:53891914-53891933 None:intergenic 45.0%
CAACTCCGCATCCTTATATG+TGG - chr8_2:53891912-53891931 Msa1255360:intron 45.0%
ACTCCGCATCCTTATATGTG+GGG - chr8_2:53891914-53891933 Msa1255360:intron 45.0%
TACATTGCAGGATACGGAAC+TGG + chr8_2:53892063-53892082 None:intergenic 45.0%
GAGCATACATATTCCCAGGA+GGG + chr8_2:53892086-53892105 None:intergenic 45.0%
TGAGCATACATATTCCCAGG+AGG + chr8_2:53892087-53892106 None:intergenic 45.0%
GGATGAGCATACATATTCCC+AGG + chr8_2:53892090-53892109 None:intergenic 45.0%
TGACTAACCACTACCATGCT+AGG + chr8_2:53892111-53892130 None:intergenic 45.0%
TGTACACTGCGTCTATGTCT+CGG - chr8_2:53892149-53892168 Msa1255360:CDS 45.0%
AACGTGGCAAAAAAGTTGCC+TGG + chr8_2:53892226-53892245 None:intergenic 45.0%
CACCAAACCACAGAGTTTGA+AGG - chr8_2:53892339-53892358 Msa1255360:intron 45.0%
TCCCTTCAAACTCTGTGGTT+TGG + chr8_2:53892344-53892363 None:intergenic 45.0%
AACCACAGAGTTTGAAGGGA+AGG - chr8_2:53892344-53892363 Msa1255360:intron 45.0%
ACCACAGAGTTTGAAGGGAA+GGG - chr8_2:53892345-53892364 Msa1255360:intron 45.0%
!! GTATTTGCAGAAGTGCCCTT+CGG + chr8_2:53892405-53892424 None:intergenic 45.0%
GCAAATACAAGTGCCAAAGC+AGG - chr8_2:53892417-53892436 Msa1255360:intron 45.0%
TCCTTAAACAGTGGTGACAG+TGG - chr8_2:53892570-53892589 Msa1255360:intron 45.0%
ACCACTGTCACCACTGTTTA+AGG + chr8_2:53892574-53892593 None:intergenic 45.0%
TGCTAGCGATGAAAACCAAC+AGG - chr8_2:53892611-53892630 Msa1255360:intron 45.0%
TGTGGATGTGTCTGTGTTTC+AGG + chr8_2:53892693-53892712 None:intergenic 45.0%
AAACACAGACACATCCACAC+CGG - chr8_2:53892694-53892713 Msa1255360:CDS 45.0%
!! AAATGCATTTGTCGGTGTCG+AGG - chr8_2:53892752-53892771 Msa1255360:intron 45.0%
! TTTTTCGCGGTTGCTGAAAC+AGG - chr8_2:53893012-53893031 Msa1255360:intron 45.0%
AGTAGTATTGTTCTGCGCGT+TGG + chr8_2:53893063-53893082 None:intergenic 45.0%
AACGCGCAGAACAATACTAC+TGG - chr8_2:53893062-53893081 Msa1255360:intron 45.0%
ATCGAGACAACAGGATTTCC+AGG + chr8_2:53893110-53893129 None:intergenic 45.0%
AGTCTAATCGAGAGTCAGCT+AGG - chr8_2:53893481-53893500 Msa1255360:intron 45.0%
TGGCTCAGTGTTATCCTCAA+GGG + chr8_2:53893555-53893574 None:intergenic 45.0%
TTGGCTCAGTGTTATCCTCA+AGG + chr8_2:53893556-53893575 None:intergenic 45.0%
! ATTTTCCTGGTCCAGTTGGA+TGG + chr8_2:53893727-53893746 None:intergenic 45.0%
! TACAACTGCTGGGATTTTCC+TGG + chr8_2:53893740-53893759 None:intergenic 45.0%
TGCAGTTCGATACAACTGCT+GGG + chr8_2:53893750-53893769 None:intergenic 45.0%
TTGCAGTTCGATACAACTGC+TGG + chr8_2:53893751-53893770 None:intergenic 45.0%
! TCCAACAACTGAGGTTTGGT+TGG - chr8_2:53893777-53893796 Msa1255360:intron 45.0%
TCCAACCAAACCTCAGTTGT+TGG + chr8_2:53893781-53893800 None:intergenic 45.0%
GCAATAGCCTATAGAGGATC+TGG - chr8_2:53893812-53893831 Msa1255360:intron 45.0%
GATCAACCCAGATCCTCTAT+AGG + chr8_2:53893822-53893841 None:intergenic 45.0%
TGAAGAGCTACAAAAGAGGG+TGG - chr8_2:53894080-53894099 Msa1255360:intron 45.0%
!! TTGTCTACAAAGCACCGACA+CGG - chr8_2:53894235-53894254 Msa1255360:intron 45.0%
TTACCACTCACCTCATGTGT+CGG - chr8_2:53894315-53894334 Msa1255360:intron 45.0%
CCGAACACACATTCAATCTG+AGG - chr8_2:53894352-53894371 Msa1255360:five_prime_UTR 45.0%
! CAACTCACAATCTGAGGTGT+CGG - chr8_2:53894410-53894429 Msa1255360:five_prime_UTR 45.0%
GTCGTGTAAACAGGAAGAGT+TGG - chr8_2:53894434-53894453 Msa1255360:five_prime_UTR 45.0%
AAGAGTTGGAACGGTTGTGT+GGG - chr8_2:53894448-53894467 Msa1255360:five_prime_UTR 45.0%
!!! TAAAGTAATTATAATTTTTT+TGG - chr8_2:53889942-53889961 Msa1255360:three_prime_UTR 5.0%
!! ATAAACTTATAAAAAAATAA+TGG - chr8_2:53890666-53890685 Msa1255360:intron 5.0%
!! GGCTTTTGGGTGTGTTGTTG+TGG - chr8_2:53889963-53889982 Msa1255360:three_prime_UTR 50.0%
AGCTAGAGCAAAGTCCTGTG+TGG - chr8_2:53890522-53890541 Msa1255360:intron 50.0%
TATGTTGAGCCAGTCCACAC+AGG + chr8_2:53890539-53890558 None:intergenic 50.0%
!! TGTGTTGGCTTGGAACCTCA+GGG + chr8_2:53890613-53890632 None:intergenic 50.0%
TGCATGGAGGTTGACCAATC+TGG + chr8_2:53891467-53891486 None:intergenic 50.0%
! AGATTGGTCAACCTCCATGC+AGG - chr8_2:53891466-53891485 Msa1255360:CDS 50.0%
GTCAACCTCCATGCAGGTAA+TGG - chr8_2:53891472-53891491 Msa1255360:CDS 50.0%
CTTGTGTGACTGTTTGGGAG+AGG + chr8_2:53891754-53891773 None:intergenic 50.0%
AGCGGCTCCAGGATTATAGT+AGG + chr8_2:53891858-53891877 None:intergenic 50.0%
GTTGAGGCATAATAGGGAGG+TGG + chr8_2:53891881-53891900 None:intergenic 50.0%
CCTCCCCACATATAAGGATG+CGG + chr8_2:53891920-53891939 None:intergenic 50.0%
! CATCCTATGATGGCGCCATA+CGG - chr8_2:53892033-53892052 Msa1255360:intron 50.0%
! ATCCTATGATGGCGCCATAC+GGG - chr8_2:53892034-53892053 Msa1255360:intron 50.0%
! GGAGGGTACATTGCAGGATA+CGG + chr8_2:53892069-53892088 None:intergenic 50.0%
TATCCTGCAATGTACCCTCC+TGG - chr8_2:53892069-53892088 Msa1255360:intron 50.0%
ATCCTGCAATGTACCCTCCT+GGG - chr8_2:53892070-53892089 Msa1255360:intron 50.0%
TGCTCATCCTAGCATGGTAG+TGG - chr8_2:53892101-53892120 Msa1255360:intron 50.0%
!! GTGGTTTGGTGCATAGCACT+TGG + chr8_2:53892330-53892349 None:intergenic 50.0%
TCCCTTCCCTTCAAACTCTG+TGG + chr8_2:53892349-53892368 None:intergenic 50.0%
TTTGAAGGGAAGGGACCTGA+TGG - chr8_2:53892354-53892373 Msa1255360:intron 50.0%
GGGACCTGATGGAAAGGATA+AGG - chr8_2:53892365-53892384 Msa1255360:intron 50.0%
CTTTCCACTCTCTCCTGCTT+TGG + chr8_2:53892433-53892452 None:intergenic 50.0%
CAAAGCAGGAGAGAGTGGAA+AGG - chr8_2:53892431-53892450 Msa1255360:intron 50.0%
GGATCAGGTTCAGGCAATGA+TGG - chr8_2:53892456-53892475 Msa1255360:intron 50.0%
AGTGGTGACAGTGGTTCAGA+GGG - chr8_2:53892579-53892598 Msa1255360:intron 50.0%
AGGCGACACTTGTCATACAC+TGG - chr8_2:53892772-53892791 Msa1255360:intron 50.0%
CTAATCGAGAGTCAGCTAGG+CGG - chr8_2:53893484-53893503 Msa1255360:intron 50.0%
CTACGCAAGCAGGTAAGCTT+TGG - chr8_2:53893513-53893532 Msa1255360:intron 50.0%
TATAGCCATCCAACTGGACC+AGG - chr8_2:53893719-53893738 Msa1255360:intron 50.0%
! TGGGATTTTCCTGGTCCAGT+TGG + chr8_2:53893731-53893750 None:intergenic 50.0%
ATTGGACAACTACGGGGAAC+TGG + chr8_2:53893854-53893873 None:intergenic 50.0%
GTTCCCCGTAGTTGTCCAAT+AGG - chr8_2:53893854-53893873 Msa1255360:intron 50.0%
CTCTTCACACTCAGCCTAGT+TGG + chr8_2:53894067-53894086 None:intergenic 50.0%
! TGACACTCACGCATTGACAC+TGG - chr8_2:53894261-53894280 Msa1255360:intron 50.0%
!! AGGTGTCGGTGCTATATAGC+TGG - chr8_2:53894372-53894391 Msa1255360:five_prime_UTR 50.0%
GAAGAGTTGGAACGGTTGTG+TGG - chr8_2:53894447-53894466 Msa1255360:five_prime_UTR 50.0%
GTCTCATCGTTCACTAGCGG+CGG - chr8_2:53890489-53890508 Msa1255360:CDS 55.0%
TCTCATCGTTCACTAGCGGC+GGG - chr8_2:53890490-53890509 Msa1255360:CDS 55.0%
GAGCAAAGTCCTGTGTGGAC+TGG - chr8_2:53890527-53890546 Msa1255360:intron 55.0%
GAACCTGAGACCTAGAGAGG+AGG - chr8_2:53890584-53890603 Msa1255360:intron 55.0%
TGTCCTCCTCTCTAGGTCTC+AGG + chr8_2:53890590-53890609 None:intergenic 55.0%
!! GTGTGTTGGCTTGGAACCTC+AGG + chr8_2:53890614-53890633 None:intergenic 55.0%
GGCATAATAGGGAGGTGGAG+CGG + chr8_2:53891876-53891895 None:intergenic 55.0%
CCGCATCCTTATATGTGGGG+AGG - chr8_2:53891917-53891936 Msa1255360:intron 55.0%
TCCTTATATGTGGGGAGGCC+AGG - chr8_2:53891922-53891941 Msa1255360:intron 55.0%
ACCTGGCCTCCCCACATATA+AGG + chr8_2:53891926-53891945 None:intergenic 55.0%
TACGGAACTGGAGTCCCGTA+TGG + chr8_2:53892051-53892070 None:intergenic 55.0%
! TTCCCAGGAGGGTACATTGC+AGG + chr8_2:53892075-53892094 None:intergenic 55.0%
AGGGAAGGGACCTGATGGAA+AGG - chr8_2:53892359-53892378 Msa1255360:intron 55.0%
AGTGCCAAAGCAGGAGAGAG+TGG - chr8_2:53892426-53892445 Msa1255360:intron 55.0%
GAGAGTGGAAAGGCAGGATC+AGG - chr8_2:53892441-53892460 Msa1255360:intron 55.0%
GGAAAGGCAGGATCAGGTTC+AGG - chr8_2:53892447-53892466 Msa1255360:intron 55.0%
CAGTGGTGACAGTGGTTCAG+AGG - chr8_2:53892578-53892597 Msa1255360:intron 55.0%
!! GCGTTGGCTCCTGAAGTTCA+TGG + chr8_2:53893047-53893066 None:intergenic 55.0%
!! GTTGCAGGCATCGAGACAAC+AGG + chr8_2:53893119-53893138 None:intergenic 55.0%
! CTGGTGCACTTGGTGAACAG+TGG - chr8_2:53893231-53893250 Msa1255360:intron 55.0%
! ACAAAAGAGGGTGGAAGCGC+TGG - chr8_2:53894089-53894108 Msa1255360:intron 55.0%
!! CAAAAGAGGGTGGAAGCGCT+GGG - chr8_2:53894090-53894109 Msa1255360:intron 55.0%
CGTGAGTGTCATGTCCGTGT+CGG + chr8_2:53894252-53894271 None:intergenic 55.0%
ACACCGACACATGAGGTGAG+TGG + chr8_2:53894321-53894340 None:intergenic 55.0%
TGACACGACACCGACACATG+AGG + chr8_2:53894328-53894347 None:intergenic 55.0%
!! GGTGTCGGTGTCGTGTAAAC+AGG - chr8_2:53894425-53894444 Msa1255360:five_prime_UTR 55.0%
!! CAGTTCCTCAGTGTCGGCTT+TGG - chr8_2:53894507-53894526 Msa1255360:five_prime_UTR 55.0%
!! TTCCTCAGTGTCGGCTTTGG+TGG - chr8_2:53894510-53894529 Msa1255360:five_prime_UTR 55.0%
! CTCAGGGTGTCCTCCTCTCT+AGG + chr8_2:53890597-53890616 None:intergenic 60.0%
CTAGAGAGGAGGACACCCTG+AGG - chr8_2:53890595-53890614 Msa1255360:intron 60.0%
GTCCCGTATGGCGCCATCAT+AGG + chr8_2:53892039-53892058 None:intergenic 60.0%
GCAGGAGAGAGTGGAAAGGC+AGG - chr8_2:53892435-53892454 Msa1255360:intron 60.0%
CACAATCAACCTGGTGCCCC+TGG - chr8_2:53893206-53893225 Msa1255360:intron 60.0%
ACCAAGTGCACCAGCTCCAG+GGG + chr8_2:53893225-53893244 None:intergenic 60.0%
CACCAAGTGCACCAGCTCCA+GGG + chr8_2:53893226-53893245 None:intergenic 60.0%
TCACCAAGTGCACCAGCTCC+AGG + chr8_2:53893227-53893246 None:intergenic 60.0%
GCGGTCAAGACTACGCAAGC+AGG - chr8_2:53893503-53893522 Msa1255360:intron 60.0%
!! AAGAGGGTGGAAGCGCTGGG+AGG - chr8_2:53894093-53894112 Msa1255360:intron 65.0%
CGCCACCAAAGCCGACACTG+AGG + chr8_2:53894515-53894534 None:intergenic 65.0%
TAGGGAGGTGGAGCGGCTCC+AGG + chr8_2:53891869-53891888 None:intergenic 70.0%
CAACCTGGTGCCCCTGGAGC+TGG - chr8_2:53893212-53893231 Msa1255360:intron 70.0%
GCCCCTGGAGCTGGTGCACT+TGG - chr8_2:53893221-53893240 Msa1255360:intron 70.0%
!! GCACCAGCTCCAGGGGCACC+AGG + chr8_2:53893218-53893237 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 53889696 53894908 53889696 ID=Msa1255360;Name=Msa1255360
chr8_2 mRNA 53889696 53894908 53889696 ID=Msa1255360-mRNA-1;Parent=Msa1255360;Name=Msa1255360-mRNA-1;_AED=0.19;_eAED=0.19;_QI=717|1|1|1|0.90|0.83|12|411|340
chr8_2 exon 53889696 53890157 53889696 ID=Msa1255360-mRNA-1:exon:16735;Parent=Msa1255360-mRNA-1
chr8_2 exon 53890407 53890532 53890407 ID=Msa1255360-mRNA-1:exon:16734;Parent=Msa1255360-mRNA-1
chr8_2 exon 53891080 53891157 53891080 ID=Msa1255360-mRNA-1:exon:16733;Parent=Msa1255360-mRNA-1
chr8_2 exon 53891342 53891547 53891342 ID=Msa1255360-mRNA-1:exon:16732;Parent=Msa1255360-mRNA-1
chr8_2 exon 53891632 53891680 53891632 ID=Msa1255360-mRNA-1:exon:16731;Parent=Msa1255360-mRNA-1
chr8_2 exon 53891972 53892023 53891972 ID=Msa1255360-mRNA-1:exon:16730;Parent=Msa1255360-mRNA-1
chr8_2 exon 53892114 53892280 53892114 ID=Msa1255360-mRNA-1:exon:16729;Parent=Msa1255360-mRNA-1
chr8_2 exon 53892482 53892571 53892482 ID=Msa1255360-mRNA-1:exon:16728;Parent=Msa1255360-mRNA-1
chr8_2 exon 53892661 53892750 53892661 ID=Msa1255360-mRNA-1:exon:16727;Parent=Msa1255360-mRNA-1
chr8_2 exon 53893117 53893173 53893117 ID=Msa1255360-mRNA-1:exon:16726;Parent=Msa1255360-mRNA-1
chr8_2 exon 53893259 53893448 53893259 ID=Msa1255360-mRNA-1:exon:16725;Parent=Msa1255360-mRNA-1
chr8_2 exon 53894325 53894908 53894325 ID=Msa1255360-mRNA-1:exon:16724;Parent=Msa1255360-mRNA-1
chr8_2 five_prime_UTR 53894325 53894908 53894325 ID=Msa1255360-mRNA-1:five_prime_utr;Parent=Msa1255360-mRNA-1
chr8_2 five_prime_UTR 53893316 53893448 53893316 ID=Msa1255360-mRNA-1:five_prime_utr;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53893259 53893315 53893259 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53893117 53893173 53893117 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53892661 53892750 53892661 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53892482 53892571 53892482 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53892114 53892280 53892114 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53891972 53892023 53891972 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53891632 53891680 53891632 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53891342 53891547 53891342 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53891080 53891157 53891080 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53890407 53890532 53890407 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 CDS 53890107 53890157 53890107 ID=Msa1255360-mRNA-1:cds;Parent=Msa1255360-mRNA-1
chr8_2 three_prime_UTR 53889696 53890106 53889696 ID=Msa1255360-mRNA-1:three_prime_utr;Parent=Msa1255360-mRNA-1
Gene Sequence

>Msa1255360

ATGGGGACTAAGGAGGATAGCACAACTAAACCTTCTAAAACATCTTCATCAACTCAGGAAGTACCAACACCAACAGTACAACCATCATATCCAGATTGGTCAACCTCCATGCAGGCCTACTATAATCCTGGAGCCGCTCCACCTCCCTATTATGCCTCAACTGTTGCTTCACCAACTCCGCATCCTTATATGTGGGGAGGCCAGCATCCTATGATGGCGCCATACGGGACTCCAGTTCCGTATCCTGCAATGTACCCTCCTGGGAATATGTATGCTCATCCTAGCATGGTAGTGACTCCAAGTGCTATGCACCAAACCACAGAGTTTGAAGGGAAGGGACCTGATGGAAAGGATAAGGATTCATCTAAAAAACCGAAGGGCACTTCTGCAAATACAAGTGCCAAAGCAGGAGAGAGTGGAAAGGCAGGATCAGGTTCAGGCAATGATGGCTTTTCACATAGTGGTGACAGTGGTTCAGAGGGTTCATCTAATGCTAGCGATGAAAACCAACAGGAATCAGCTAGAAACAAGAAGGGAAGCTTTGACCTCATGCTTGTTGATGGAGCCAACGCGCAGAACAATACTACTGGACCCATTTCTCAGTCATCTGTTCCTGGAAATCCTGTTGTCTCGATGCCTGCAACTAATCTTAATATTGGAATGGACTTATGGAATGCATCTTCTGCTGGTGCTGAAGCCGCCAAAATGAGACACAATCAACCTGGTGCCCCTGGAGCTGGTGCACTTGGTGAACAGTGGATGCAACAAGATGATCGTGAGTTGAAAAGACAGAAGAGAAAACAGTCTAATCGAGAGTCAGCTAGGCGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGCTACAAAAGAGGGTGGAAGCGCTGGGAGGTGAGAATCGAACTCTCAGAGAAGAGCTTCAGAAACTTTCTGAAGAGTGTGAGAAGCTTACATCTGAAAACGATTCTATTAAGGAAGAGTTGGAACGGTTGTGTGGGCCTGAAGTAGTTGCTAACCTTGAATGA
Protein sequence

>Msa1255360

MGTKEDSTTKPSKTSSSTQEVPTPTVQPSYPDWSTSMQAYYNPGAAPPPYYASTVASPTPHPYMWGGQHPMMAPYGTPVPYPAMYPPGNMYAHPSMVVTPSAMHQTTEFEGKGPDGKDKDSSKKPKGTSANTSAKAGESGKAGSGSGNDGFSHSGDSGSEGSSNASDENQQESARNKKGSFDLMLVDGANAQNNTTGPISQSSVPGNPVVSMPATNLNIGMDLWNASSAGAEAAKMRHNQPGAPGAGALGEQWMQQDDRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSENDSIKEELERLCGPEVVANLE*