Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256620 | XP_013458668.1 | 91.857 | 307 | 20 | 4 | 1 | 303 | 8 | 313 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256620 | sp|Q9SW11|PUB35_ARATH | 29.299 | 157 | 105 | 3 | 91 | 246 | 22 | 173 | 3.32e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1000800 | Msa1256620 | 0.821011 | 5.065205e-53 | -8.615850e-47 |
| Msa0965780 | Msa1256620 | 0.836949 | 6.932018e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256620 | MtrunA17_Chr4g0076471 | 91.857 | 307 | 20 | 4 | 1 | 303 | 8 | 313 | 0.0 | 543 |
| Msa1256620 | MtrunA17_Chr4g0076451 | 49.438 | 178 | 79 | 6 | 89 | 258 | 50 | 224 | 8.60e-40 | 139 |
| Msa1256620 | MtrunA17_Chr4g0058581 | 36.313 | 179 | 100 | 6 | 87 | 262 | 113 | 280 | 2.49e-25 | 102 |
| Msa1256620 | MtrunA17_Chr4g0070941 | 34.375 | 160 | 89 | 8 | 91 | 242 | 7 | 158 | 7.11e-16 | 78.2 |
| Msa1256620 | MtrunA17_Chr2g0328101 | 30.000 | 160 | 105 | 4 | 89 | 248 | 31 | 183 | 4.70e-15 | 75.5 |
| Msa1256620 | MtrunA17_Chr3g0079031 | 28.235 | 170 | 114 | 4 | 91 | 256 | 16 | 181 | 3.36e-11 | 63.9 |
| Msa1256620 | MtrunA17_Chr3g0079051 | 26.250 | 160 | 113 | 3 | 91 | 249 | 24 | 179 | 3.80e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256620 | AT5G47740.1 | 43.564 | 202 | 104 | 7 | 63 | 260 | 21 | 216 | 8.88e-44 | 150 |
| Msa1256620 | AT5G47740.2 | 43.137 | 204 | 104 | 8 | 63 | 260 | 21 | 218 | 7.24e-42 | 145 |
| Msa1256620 | AT4G25160.1 | 29.299 | 157 | 105 | 3 | 91 | 246 | 22 | 173 | 3.38e-14 | 73.6 |
| Msa1256620 | AT5G51270.2 | 28.313 | 166 | 114 | 2 | 81 | 245 | 24 | 185 | 1.49e-12 | 68.6 |
| Msa1256620 | AT5G51270.1 | 28.313 | 166 | 114 | 2 | 81 | 245 | 24 | 185 | 1.49e-12 | 68.6 |
Find 63 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCTATCATGGTTATTT+AGG | 0.209565 | 8_2:+56776268 | Msa1256620:CDS |
| TGAATATTGAGTAGCGAAAA+AGG | 0.215696 | 8_2:+56776033 | Msa1256620:intron |
| CTCTACTTGATGAGAAATTC+TGG | 0.259064 | 8_2:-56776208 | None:intergenic |
| GTGATCGACCAAATGATTAA+TGG | 0.306978 | 8_2:+56776144 | Msa1256620:CDS |
| CAAGTGTTTGATTACAATTT+CGG | 0.312597 | 8_2:+56773671 | Msa1256620:CDS |
| GAATCTAAATATAAGGAAAT+TGG | 0.342523 | 8_2:+56775784 | Msa1256620:CDS |
| CCTAAATAACCATGATAGAT+TGG | 0.346815 | 8_2:-56776268 | None:intergenic |
| TTTGAAGAAGGAAAGTAGAT+TGG | 0.355768 | 8_2:+56773739 | Msa1256620:CDS |
| CCCAAGTGAAAAGCAAATTA+AGG | 0.356747 | 8_2:+56775563 | Msa1256620:CDS |
| TTGTAGGGAATCTAAATATA+AGG | 0.359391 | 8_2:+56775777 | Msa1256620:CDS |
| GAACTACCCATTCTAATCTA+AGG | 0.382032 | 8_2:+56775813 | Msa1256620:CDS |
| CAAGCATGGAAGCACTTTCA+TGG | 0.384069 | 8_2:+56773870 | Msa1256620:CDS |
| TGTAACCAAGTGATTGAGAT+TGG | 0.384205 | 8_2:+56776371 | Msa1256620:three_prime_UTR |
| AATGTAATATTTACTCATCT+TGG | 0.390060 | 8_2:-56776306 | None:intergenic |
| AAGTAGACCCATTAATCATT+TGG | 0.394457 | 8_2:-56776152 | None:intergenic |
| AATAAAACCACAACCACAAC+TGG | 0.394819 | 8_2:-56773633 | None:intergenic |
| TCTTGAATATCATGCTTAGT+TGG | 0.411358 | 8_2:-56773575 | None:intergenic |
| TTGGAATTAGTTTGACTTGA+GGG | 0.414606 | 8_2:-56773949 | None:intergenic |
| TGATCGACCAAATGATTAAT+GGG | 0.417446 | 8_2:+56776145 | Msa1256620:CDS |
| TCTGGAACTGCTACTGTCTC+TGG | 0.426326 | 8_2:-56776190 | None:intergenic |
| GCAAAATTCCATTGCGGACA+TGG | 0.429291 | 8_2:+56776065 | Msa1256620:CDS |
| AGAGAAACAGTAGTTGTAGA+AGG | 0.431084 | 8_2:-56773914 | None:intergenic |
| TATGTTACCTTAGATTAGAA+TGG | 0.433916 | 8_2:-56775820 | None:intergenic |
| GAAATCTCCAGTTGTGGTTG+TGG | 0.445667 | 8_2:+56773626 | Msa1256620:CDS |
| GGTAGAAATGATGCTTATTG+AGG | 0.452714 | 8_2:+56775724 | Msa1256620:CDS |
| AATATAAGGAAATTGGTGAT+TGG | 0.458551 | 8_2:+56775791 | Msa1256620:CDS |
| GTTTGAGATAAATTTGAAGA+AGG | 0.464932 | 8_2:+56773727 | Msa1256620:CDS |
| GAAGCCATTGTGGACCTTGT+AGG | 0.467590 | 8_2:+56775761 | Msa1256620:CDS |
| CTAAATAACCATGATAGATT+GGG | 0.468991 | 8_2:-56776267 | None:intergenic |
| AGGTGTCACGGCATGTTTCA+AGG | 0.477649 | 8_2:-56773894 | None:intergenic |
| GTAGAAATGATGCTTATTGA+GGG | 0.483302 | 8_2:+56775725 | Msa1256620:CDS |
| TCTAGATTTACATGACTCCT+TGG | 0.492923 | 8_2:-56775520 | None:intergenic |
| ATGTTACCTTAGATTAGAAT+GGG | 0.495541 | 8_2:-56775819 | None:intergenic |
| TTATATTTAGATTCCCTACA+AGG | 0.503404 | 8_2:-56775775 | None:intergenic |
| AAGCCATTGTGGACCTTGTA+GGG | 0.505067 | 8_2:+56775762 | Msa1256620:CDS |
| GAAGCTATGTATTGAATCAA+AGG | 0.507814 | 8_2:+56775609 | Msa1256620:CDS |
| GAGAGCAACTTACATGGAGT+TGG | 0.508185 | 8_2:-56773968 | None:intergenic |
| CGAAATTGTAATCAAACACT+TGG | 0.523720 | 8_2:-56773670 | None:intergenic |
| TTCGGAGACGACGACGATGA+TGG | 0.523895 | 8_2:+56773689 | Msa1256620:CDS |
| TTTAGATGATGTTGTTTATG+TGG | 0.528639 | 8_2:+56773823 | Msa1256620:CDS |
| ATTGGATTCAATAAGAGAAG+AGG | 0.530259 | 8_2:+56773757 | Msa1256620:CDS |
| CAGAATTTCTCATCAAGTAG+AGG | 0.556291 | 8_2:+56776209 | Msa1256620:CDS |
| TATGTGGCAGTGGGAACAAA+TGG | 0.556548 | 8_2:+56773839 | Msa1256620:CDS |
| TGATGTTGTTTATGTGGCAG+TGG | 0.557388 | 8_2:+56773829 | Msa1256620:CDS |
| AAATAGTGGGAAAGATTCCA+AGG | 0.564855 | 8_2:+56775503 | Msa1256620:intron |
| GGTATCCAATCTCAATCACT+TGG | 0.569063 | 8_2:-56776376 | None:intergenic |
| ATAGCTTCATGAATTTCTGA+AGG | 0.578929 | 8_2:-56775594 | None:intergenic |
| TTGGGCATCAAAAGCTTGAG+TGG | 0.587193 | 8_2:-56776249 | None:intergenic |
| GTTGGAATTAGTTTGACTTG+AGG | 0.589120 | 8_2:-56773950 | None:intergenic |
| CAACGTTGCTGAAGCCATTG+TGG | 0.592251 | 8_2:+56775751 | Msa1256620:CDS |
| TGACTTGAGGGAAAACGTGT+AGG | 0.604542 | 8_2:-56773937 | None:intergenic |
| AAATGGTGGAAGTTCAAGCA+TGG | 0.604604 | 8_2:+56773856 | Msa1256620:CDS |
| CTTGAGTGGAACAAAACCAT+GGG | 0.629470 | 8_2:-56776235 | None:intergenic |
| CATCAAGTAGAGGAATCCCA+TGG | 0.636091 | 8_2:+56776219 | Msa1256620:CDS |
| GCTTGAGTGGAACAAAACCA+TGG | 0.639680 | 8_2:-56776236 | None:intergenic |
| GATGTTGTTTATGTGGCAGT+GGG | 0.642705 | 8_2:+56773830 | Msa1256620:CDS |
| AGTAGTTGTAGAAGGTGTCA+CGG | 0.650946 | 8_2:-56773906 | None:intergenic |
| ATTCAATAAGAGAAGAGGAG+TGG | 0.652515 | 8_2:+56773762 | Msa1256620:CDS |
| ATTCCCTACAAGGTCCACAA+TGG | 0.658292 | 8_2:-56775765 | None:intergenic |
| GTGGCAGTGGGAACAAATGG+TGG | 0.662195 | 8_2:+56773842 | Msa1256620:CDS |
| GATGTTAAAATCATATGTGA+AGG | 0.667869 | 8_2:+56776114 | Msa1256620:CDS |
| GATGATGAAATCTCCAGTTG+TGG | 0.697511 | 8_2:+56773620 | Msa1256620:CDS |
| AGGAAGGCAAAATTCCATTG+CGG | 0.724680 | 8_2:+56776059 | Msa1256620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTCATATAATAATTATTT+AGG | + | chr8_2:56774205-56774224 | Msa1256620:intron | 10.0% |
| !! | GTTCATATAATAATTATTTA+GGG | + | chr8_2:56774206-56774225 | Msa1256620:intron | 10.0% |
| !! | ATTATGAAAAGAAAAGAAAA+TGG | - | chr8_2:56774364-56774383 | None:intergenic | 15.0% |
| !!! | AAAACTTATTTTGAATGTTT+TGG | - | chr8_2:56774518-56774537 | None:intergenic | 15.0% |
| !!! | AAACTCAACAATATTTTTTT+TGG | - | chr8_2:56774770-56774789 | None:intergenic | 15.0% |
| !!! | TATCTCACATTTTTTTTTTT+TGG | + | chr8_2:56775188-56775207 | Msa1256620:intron | 15.0% |
| !!! | TTTGACAATAATTTGCTTTT+TGG | + | chr8_2:56774390-56774409 | Msa1256620:intron | 20.0% |
| !!! | TGTTTTTTTTTCGTACATTT+TGG | + | chr8_2:56774455-56774474 | Msa1256620:intron | 20.0% |
| !!! | TATTTTGAATGTTTTGGTTA+TGG | - | chr8_2:56774512-56774531 | None:intergenic | 20.0% |
| !! | TTTCATAATCGTAAACAATT+TGG | + | chr8_2:56774546-56774565 | Msa1256620:intron | 20.0% |
| !! | TTCATAATCGTAAACAATTT+GGG | + | chr8_2:56774547-56774566 | Msa1256620:intron | 20.0% |
| !!! | ATTTTCATGAGAGATTTTTT+CGG | - | chr8_2:56775159-56775178 | None:intergenic | 20.0% |
| !! | TATCTTGAATGTTTAAATAG+TGG | + | chr8_2:56775489-56775508 | Msa1256620:intron | 20.0% |
| !! | ATCTTGAATGTTTAAATAGT+GGG | + | chr8_2:56775490-56775509 | Msa1256620:intron | 20.0% |
| !! | ATACCTTATATATGTATTGA+TGG | + | chr8_2:56775649-56775668 | Msa1256620:intron | 20.0% |
| !! | GAATCTAAATATAAGGAAAT+TGG | + | chr8_2:56775784-56775803 | Msa1256620:CDS | 20.0% |
| !! | CTACAAAAAAAAAAAAGACA+AGG | - | chr8_2:56775846-56775865 | None:intergenic | 20.0% |
| !!! | TGTCTTTTTTTTTTTTGTAG+TGG | + | chr8_2:56775846-56775865 | Msa1256620:intron | 20.0% |
| !! | AATGTAATATTTACTCATCT+TGG | - | chr8_2:56776309-56776328 | None:intergenic | 20.0% |
| ! | CAAGTGTTTGATTACAATTT+CGG | + | chr8_2:56773671-56773690 | Msa1256620:CDS | 25.0% |
| !! | GTTTGAGATAAATTTGAAGA+AGG | + | chr8_2:56773727-56773746 | Msa1256620:CDS | 25.0% |
| !! | TTTAGATGATGTTGTTTATG+TGG | + | chr8_2:56773823-56773842 | Msa1256620:CDS | 25.0% |
| ! | TGTTTGTAAATAAGACAAGA+AGG | - | chr8_2:56773993-56774012 | None:intergenic | 25.0% |
| ! | TTAGTGATTTATGCTTATGT+TGG | - | chr8_2:56774039-56774058 | None:intergenic | 25.0% |
| ! | TATGATGTGCAATTAATAAG+AGG | - | chr8_2:56774098-56774117 | None:intergenic | 25.0% |
| !! | AAAGATTTGATCACATCTTT+TGG | - | chr8_2:56774184-56774203 | None:intergenic | 25.0% |
| !! | TAATTATTTAGGGAGAGTAT+TGG | + | chr8_2:56774216-56774235 | Msa1256620:intron | 25.0% |
| ! | ATGAAAAGAAAAGAAAATGG+AGG | - | chr8_2:56774361-56774380 | None:intergenic | 25.0% |
| !!! | AATGTTTTGGTTATGGTTTT+GGG | - | chr8_2:56774505-56774524 | None:intergenic | 25.0% |
| ! | ATTAATTGTACTTGGTTACT+AGG | + | chr8_2:56774647-56774666 | Msa1256620:intron | 25.0% |
| !!! | ACTAGGAATTTTAAAATCGT+TGG | + | chr8_2:56774664-56774683 | Msa1256620:intron | 25.0% |
| !!! | TGGTGGGTTTTAATATTTAA+AGG | + | chr8_2:56774684-56774703 | Msa1256620:intron | 25.0% |
| !! | ACCTAATGTCTTAATGTTTT+AGG | + | chr8_2:56774865-56774884 | Msa1256620:intron | 25.0% |
| ! | ACCTAAAACATTAAGACATT+AGG | - | chr8_2:56774869-56774888 | None:intergenic | 25.0% |
| !!! | TAATGTTTTAGGTAGAGATA+TGG | + | chr8_2:56774876-56774895 | Msa1256620:intron | 25.0% |
| ! | AACTGTCATTAGATTAACTA+GGG | - | chr8_2:56774945-56774964 | None:intergenic | 25.0% |
| !! | TGTGACTATATTTTTCTCAA+GGG | - | chr8_2:56775041-56775060 | None:intergenic | 25.0% |
| !! | TTGTGACTATATTTTTCTCA+AGG | - | chr8_2:56775042-56775061 | None:intergenic | 25.0% |
| ! | ATAAAAAAAAACACCAGCTA+AGG | - | chr8_2:56775121-56775140 | None:intergenic | 25.0% |
| !!! | TTTTCATGAGAGATTTTTTC+GGG | - | chr8_2:56775158-56775177 | None:intergenic | 25.0% |
| !!! | CACATTTTTTTTTTTTGGTC+AGG | + | chr8_2:56775193-56775212 | Msa1256620:intron | 25.0% |
| !!! | CGTATCTCACATTTTAATTA+AGG | + | chr8_2:56775217-56775236 | Msa1256620:intron | 25.0% |
| ! | ACTCCATCAATACATATATA+AGG | - | chr8_2:56775655-56775674 | None:intergenic | 25.0% |
| ! | TTATATTTAGATTCCCTACA+AGG | - | chr8_2:56775778-56775797 | None:intergenic | 25.0% |
| ! | TTGTAGGGAATCTAAATATA+AGG | + | chr8_2:56775777-56775796 | Msa1256620:CDS | 25.0% |
| !! | AATATAAGGAAATTGGTGAT+TGG | + | chr8_2:56775791-56775810 | Msa1256620:CDS | 25.0% |
| ! | ATGTTACCTTAGATTAGAAT+GGG | - | chr8_2:56775822-56775841 | None:intergenic | 25.0% |
| ! | TATGTTACCTTAGATTAGAA+TGG | - | chr8_2:56775823-56775842 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTGTAGTGGC+CGG | + | chr8_2:56775850-56775869 | Msa1256620:intron | 25.0% |
| ! | GATGTTAAAATCATATGTGA+AGG | + | chr8_2:56776114-56776133 | Msa1256620:CDS | 25.0% |
| ! | CTAAATAACCATGATAGATT+GGG | - | chr8_2:56776270-56776289 | None:intergenic | 25.0% |
| ! | TTTTGTAGACGAAAAATCGA+AGG | - | chr8_2:56773541-56773560 | None:intergenic | 30.0% |
| TCTTGAATATCATGCTTAGT+TGG | - | chr8_2:56773578-56773597 | None:intergenic | 30.0% | |
| CGAAATTGTAATCAAACACT+TGG | - | chr8_2:56773673-56773692 | None:intergenic | 30.0% | |
| TTTGAAGAAGGAAAGTAGAT+TGG | + | chr8_2:56773739-56773758 | Msa1256620:CDS | 30.0% | |
| ATTGGATTCAATAAGAGAAG+AGG | + | chr8_2:56773757-56773776 | Msa1256620:CDS | 30.0% | |
| !! | TTGGAATTAGTTTGACTTGA+GGG | - | chr8_2:56773952-56773971 | None:intergenic | 30.0% |
| ! | CTGCTCAATTTTTCTTTTGA+AGG | + | chr8_2:56774263-56774282 | Msa1256620:intron | 30.0% |
| !!! | GAATGTTTTGGTTATGGTTT+TGG | - | chr8_2:56774506-56774525 | None:intergenic | 30.0% |
| ACAATTAATGTCAGCTCTTA+TGG | - | chr8_2:56774636-56774655 | None:intergenic | 30.0% | |
| !!! | AGGAATTTTAAAATCGTTGG+TGG | + | chr8_2:56774667-56774686 | Msa1256620:intron | 30.0% |
| !!! | GGAATTTTAAAATCGTTGGT+GGG | + | chr8_2:56774668-56774687 | Msa1256620:intron | 30.0% |
| ! | TGTCATACATTGACTAGAAA+TGG | + | chr8_2:56774806-56774825 | Msa1256620:intron | 30.0% |
| GAACTGTCATTAGATTAACT+AGG | - | chr8_2:56774946-56774965 | None:intergenic | 30.0% | |
| TGTGTCTTGAAAAATTCTTG+AGG | - | chr8_2:56775269-56775288 | None:intergenic | 30.0% | |
| !!! | AGAATTTTTCAAGACACATG+TGG | + | chr8_2:56775271-56775290 | Msa1256620:intron | 30.0% |
| !!! | CCTTAATTTGCTTTTCACTT+GGG | - | chr8_2:56775566-56775585 | None:intergenic | 30.0% |
| !!! | TCCTTAATTTGCTTTTCACT+TGG | - | chr8_2:56775567-56775586 | None:intergenic | 30.0% |
| ATAGCTTCATGAATTTCTGA+AGG | - | chr8_2:56775597-56775616 | None:intergenic | 30.0% | |
| GAAGCTATGTATTGAATCAA+AGG | + | chr8_2:56775609-56775628 | Msa1256620:CDS | 30.0% | |
| ! | TAATGAAAAGCGTAACATAC+AGG | + | chr8_2:56775697-56775716 | Msa1256620:intron | 30.0% |
| GTAGAAATGATGCTTATTGA+GGG | + | chr8_2:56775725-56775744 | Msa1256620:CDS | 30.0% | |
| !!! | TTTTTTTTTTTGTAGTGGCC+GGG | + | chr8_2:56775851-56775870 | Msa1256620:intron | 30.0% |
| CATAAAATATGCAAGGTTCA+GGG | - | chr8_2:56775884-56775903 | None:intergenic | 30.0% | |
| TGAATATTGAGTAGCGAAAA+AGG | + | chr8_2:56776033-56776052 | Msa1256620:intron | 30.0% | |
| GAATATTGAGTAGCGAAAAA+GGG | + | chr8_2:56776034-56776053 | Msa1256620:intron | 30.0% | |
| TGATCGACCAAATGATTAAT+GGG | + | chr8_2:56776145-56776164 | Msa1256620:CDS | 30.0% | |
| AAGTAGACCCATTAATCATT+TGG | - | chr8_2:56776155-56776174 | None:intergenic | 30.0% | |
| CCTAAATAACCATGATAGAT+TGG | - | chr8_2:56776271-56776290 | None:intergenic | 30.0% | |
| CCAATCTATCATGGTTATTT+AGG | + | chr8_2:56776268-56776287 | Msa1256620:CDS | 30.0% | |
| ! | TCATCTTGGTGATAAAAATC+TGG | - | chr8_2:56776295-56776314 | None:intergenic | 30.0% |
| AATAAAACCACAACCACAAC+TGG | - | chr8_2:56773636-56773655 | None:intergenic | 35.0% | |
| !!! | AGTTGTGGTTGTGGTTTTAT+TGG | + | chr8_2:56773635-56773654 | Msa1256620:CDS | 35.0% |
| !!! | GTTGTGGTTGTGGTTTTATT+GGG | + | chr8_2:56773636-56773655 | Msa1256620:CDS | 35.0% |
| ATTCAATAAGAGAAGAGGAG+TGG | + | chr8_2:56773762-56773781 | Msa1256620:CDS | 35.0% | |
| AGAGAAACAGTAGTTGTAGA+AGG | - | chr8_2:56773917-56773936 | None:intergenic | 35.0% | |
| !! | GTTGGAATTAGTTTGACTTG+AGG | - | chr8_2:56773953-56773972 | None:intergenic | 35.0% |
| GTGATTTATGCTTATGTTGG+AGG | - | chr8_2:56774036-56774055 | None:intergenic | 35.0% | |
| ATGGCATGAAAAATGAGTTC+AGG | - | chr8_2:56774617-56774636 | None:intergenic | 35.0% | |
| GAGCTGACATTAATTGTACT+TGG | + | chr8_2:56774639-56774658 | Msa1256620:intron | 35.0% | |
| TCAAGGGACAGTCTATAATA+TGG | - | chr8_2:56775025-56775044 | None:intergenic | 35.0% | |
| AGGCATGGAAAATGAAATCA+GGG | - | chr8_2:56775101-56775120 | None:intergenic | 35.0% | |
| AAGGCATGGAAAATGAAATC+AGG | - | chr8_2:56775102-56775121 | None:intergenic | 35.0% | |
| !!! | ATGAGAGATTTTTTCGGGAA+TGG | - | chr8_2:56775153-56775172 | None:intergenic | 35.0% |
| ! | AAATAGTGGGAAAGATTCCA+AGG | + | chr8_2:56775503-56775522 | Msa1256620:intron | 35.0% |
| TCTAGATTTACATGACTCCT+TGG | - | chr8_2:56775523-56775542 | None:intergenic | 35.0% | |
| CCCAAGTGAAAAGCAAATTA+AGG | + | chr8_2:56775563-56775582 | Msa1256620:CDS | 35.0% | |
| AAAGCGTAACATACAGGTTA+AGG | + | chr8_2:56775703-56775722 | Msa1256620:intron | 35.0% | |
| GGTAGAAATGATGCTTATTG+AGG | + | chr8_2:56775724-56775743 | Msa1256620:CDS | 35.0% | |
| GAACTACCCATTCTAATCTA+AGG | + | chr8_2:56775813-56775832 | Msa1256620:CDS | 35.0% | |
| !!! | TTTTTTTTTTGTAGTGGCCG+GGG | + | chr8_2:56775852-56775871 | Msa1256620:intron | 35.0% |
| GCATAAAATATGCAAGGTTC+AGG | - | chr8_2:56775885-56775904 | None:intergenic | 35.0% | |
| GACAGTGCATAAAATATGCA+AGG | - | chr8_2:56775891-56775910 | None:intergenic | 35.0% | |
| ACATGAGTTGTTTGTAGACA+AGG | - | chr8_2:56775951-56775970 | None:intergenic | 35.0% | |
| GTGATCGACCAAATGATTAA+TGG | + | chr8_2:56776144-56776163 | Msa1256620:CDS | 35.0% | |
| CTCTACTTGATGAGAAATTC+TGG | - | chr8_2:56776211-56776230 | None:intergenic | 35.0% | |
| CAGAATTTCTCATCAAGTAG+AGG | + | chr8_2:56776209-56776228 | Msa1256620:CDS | 35.0% | |
| ! | TTTTGATGCCCAATCTATCA+TGG | + | chr8_2:56776259-56776278 | Msa1256620:CDS | 35.0% |
| TGTAACCAAGTGATTGAGAT+TGG | + | chr8_2:56776371-56776390 | Msa1256620:three_prime_UTR | 35.0% | |
| GATGATGAAATCTCCAGTTG+TGG | + | chr8_2:56773620-56773639 | Msa1256620:CDS | 40.0% | |
| ! | TGATGTTGTTTATGTGGCAG+TGG | + | chr8_2:56773829-56773848 | Msa1256620:CDS | 40.0% |
| ! | GATGTTGTTTATGTGGCAGT+GGG | + | chr8_2:56773830-56773849 | Msa1256620:CDS | 40.0% |
| ! | AAATGGTGGAAGTTCAAGCA+TGG | + | chr8_2:56773856-56773875 | Msa1256620:CDS | 40.0% |
| !! | AGTAGTTGTAGAAGGTGTCA+CGG | - | chr8_2:56773909-56773928 | None:intergenic | 40.0% |
| AAGAAGGAGAGCAACTTACA+TGG | - | chr8_2:56773977-56773996 | None:intergenic | 40.0% | |
| AGATTAACTAGGGAAGCGAT+GGG | - | chr8_2:56774935-56774954 | None:intergenic | 40.0% | |
| TAGATTAACTAGGGAAGCGA+TGG | - | chr8_2:56774936-56774955 | None:intergenic | 40.0% | |
| TCTGTCCAACATTAGACTAG+GGG | - | chr8_2:56775000-56775019 | None:intergenic | 40.0% | |
| CTCTGTCCAACATTAGACTA+GGG | - | chr8_2:56775001-56775020 | None:intergenic | 40.0% | |
| ACTCTGTCCAACATTAGACT+AGG | - | chr8_2:56775002-56775021 | None:intergenic | 40.0% | |
| ! | TTCATTTTCCATGCCTTAGC+TGG | + | chr8_2:56775105-56775124 | Msa1256620:intron | 40.0% |
| AAAAAACACCAGCTAAGGCA+TGG | - | chr8_2:56775116-56775135 | None:intergenic | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr8_2:56775324-56775343 | None:intergenic | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr8_2:56775347-56775366 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr8_2:56775350-56775369 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr8_2:56775358-56775377 | Msa1256620:intron | 40.0% | |
| AGGAAGGCAAAATTCCATTG+CGG | + | chr8_2:56776059-56776078 | Msa1256620:CDS | 40.0% | |
| ! | TTTTAACACCATGTCCGCAA+TGG | - | chr8_2:56776076-56776095 | None:intergenic | 40.0% |
| CTTGAGTGGAACAAAACCAT+GGG | - | chr8_2:56776238-56776257 | None:intergenic | 40.0% | |
| GGTATCCAATCTCAATCACT+TGG | - | chr8_2:56776379-56776398 | None:intergenic | 40.0% | |
| GAAATCTCCAGTTGTGGTTG+TGG | + | chr8_2:56773626-56773645 | Msa1256620:CDS | 45.0% | |
| TATGTGGCAGTGGGAACAAA+TGG | + | chr8_2:56773839-56773858 | Msa1256620:CDS | 45.0% | |
| !! | CAAGCATGGAAGCACTTTCA+TGG | + | chr8_2:56773870-56773889 | Msa1256620:CDS | 45.0% |
| TGACTTGAGGGAAAACGTGT+AGG | - | chr8_2:56773940-56773959 | None:intergenic | 45.0% | |
| GAGAGCAACTTACATGGAGT+TGG | - | chr8_2:56773971-56773990 | None:intergenic | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr8_2:56775330-56775349 | None:intergenic | 45.0% |
| ! | TGCTTTTCACTTGGGTCAAG+TGG | - | chr8_2:56775558-56775577 | None:intergenic | 45.0% |
| AAGCCATTGTGGACCTTGTA+GGG | + | chr8_2:56775762-56775781 | Msa1256620:CDS | 45.0% | |
| ATTCCCTACAAGGTCCACAA+TGG | - | chr8_2:56775768-56775787 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | - | chr8_2:56775913-56775932 | None:intergenic | 45.0% | |
| ! | GCAATGGAATTTTGCCTTCC+TGG | - | chr8_2:56776060-56776079 | None:intergenic | 45.0% |
| GCAAAATTCCATTGCGGACA+TGG | + | chr8_2:56776065-56776084 | Msa1256620:CDS | 45.0% | |
| CATCAAGTAGAGGAATCCCA+TGG | + | chr8_2:56776219-56776238 | Msa1256620:CDS | 45.0% | |
| GCTTGAGTGGAACAAAACCA+TGG | - | chr8_2:56776239-56776258 | None:intergenic | 45.0% | |
| TTGGGCATCAAAAGCTTGAG+TGG | - | chr8_2:56776252-56776271 | None:intergenic | 45.0% | |
| ! | AGGTGTCACGGCATGTTTCA+AGG | - | chr8_2:56773897-56773916 | None:intergenic | 50.0% |
| CAAAACTACTGTCACGCTCC+CGG | + | chr8_2:56774970-56774989 | Msa1256620:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr8_2:56775337-56775356 | Msa1256620:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr8_2:56775342-56775361 | None:intergenic | 50.0% | |
| CAACGTTGCTGAAGCCATTG+TGG | + | chr8_2:56775751-56775770 | Msa1256620:CDS | 50.0% | |
| GAAGCCATTGTGGACCTTGT+AGG | + | chr8_2:56775761-56775780 | Msa1256620:CDS | 50.0% | |
| AAGGTTCAGGGTTCAAACCC+CGG | - | chr8_2:56775872-56775891 | None:intergenic | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+TGG | - | chr8_2:56775914-56775933 | None:intergenic | 50.0% | |
| GCTTGTGAGCTTAGCTCAGT+TGG | - | chr8_2:56775918-56775937 | None:intergenic | 50.0% | |
| TTGAGTAGCGAAAAAGGGCC+AGG | + | chr8_2:56776039-56776058 | Msa1256620:intron | 50.0% | |
| ! | TCTGGAACTGCTACTGTCTC+TGG | - | chr8_2:56776193-56776212 | None:intergenic | 50.0% |
| TTCGGAGACGACGACGATGA+TGG | + | chr8_2:56773689-56773708 | Msa1256620:CDS | 55.0% | |
| GTGGCAGTGGGAACAAATGG+TGG | + | chr8_2:56773842-56773861 | Msa1256620:CDS | 55.0% | |
| ! | ACATTAGACTAGGGGAGCGC+CGG | - | chr8_2:56774992-56775011 | None:intergenic | 55.0% |
| GCGCTCCCCTAGTCTAATGT+TGG | + | chr8_2:56774992-56775011 | Msa1256620:intron | 55.0% | |
| GTAGCGAAAAAGGGCCAGGA+AGG | + | chr8_2:56776043-56776062 | Msa1256620:intron | 55.0% | |
| !! | CATTAGACTAGGGGAGCGCC+GGG | - | chr8_2:56774991-56775010 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 56773515 | 56776415 | 56773515 | ID=Msa1256620;Name=Msa1256620 |
| chr8_2 | mRNA | 56773515 | 56776415 | 56773515 | ID=Msa1256620-mRNA-1;Parent=Msa1256620;Name=Msa1256620-mRNA-1;_AED=0.28;_eAED=0.28;_QI=57|1|1|1|1|1|4|101|303 |
| chr8_2 | exon | 56773515 | 56773977 | 56773515 | ID=Msa1256620-mRNA-1:exon:17488;Parent=Msa1256620-mRNA-1 |
| chr8_2 | exon | 56775509 | 56775630 | 56775509 | ID=Msa1256620-mRNA-1:exon:17489;Parent=Msa1256620-mRNA-1 |
| chr8_2 | exon | 56775719 | 56775834 | 56775719 | ID=Msa1256620-mRNA-1:exon:17490;Parent=Msa1256620-mRNA-1 |
| chr8_2 | exon | 56776047 | 56776415 | 56776047 | ID=Msa1256620-mRNA-1:exon:17491;Parent=Msa1256620-mRNA-1 |
| chr8_2 | five_prime_UTR | 56773515 | 56773571 | 56773515 | ID=Msa1256620-mRNA-1:five_prime_utr;Parent=Msa1256620-mRNA-1 |
| chr8_2 | CDS | 56773572 | 56773977 | 56773572 | ID=Msa1256620-mRNA-1:cds;Parent=Msa1256620-mRNA-1 |
| chr8_2 | CDS | 56775509 | 56775630 | 56775509 | ID=Msa1256620-mRNA-1:cds;Parent=Msa1256620-mRNA-1 |
| chr8_2 | CDS | 56775719 | 56775834 | 56775719 | ID=Msa1256620-mRNA-1:cds;Parent=Msa1256620-mRNA-1 |
| chr8_2 | CDS | 56776047 | 56776314 | 56776047 | ID=Msa1256620-mRNA-1:cds;Parent=Msa1256620-mRNA-1 |
| chr8_2 | three_prime_UTR | 56776315 | 56776415 | 56776315 | ID=Msa1256620-mRNA-1:three_prime_utr;Parent=Msa1256620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
