Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268160 | sp|Q6Q8A5|HXK2_TOBAC | 47.973 | 296 | 76 | 4 | 25 | 268 | 143 | 412 | 6.86e-77 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268160 | I3SY53 | 59.437 | 355 | 30 | 6 | 1 | 268 | 82 | 409 | 2.28e-123 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0292930 | Msa1268160 | 0.820135 | 8.048707e-53 | -8.615850e-47 |
| Msa0331000 | Msa1268160 | 0.806685 | 7.294374e-50 | -8.615850e-47 |
| Msa0975220 | Msa1268160 | 0.812186 | 4.811879e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268160 | MtrunA17_Chr1g0156571 | 59.437 | 355 | 30 | 6 | 1 | 268 | 82 | 409 | 1.49e-126 | 369 |
| Msa1268160 | MtrunA17_Chr8g0389821 | 39.796 | 294 | 96 | 7 | 29 | 268 | 143 | 409 | 4.98e-57 | 190 |
| Msa1268160 | MtrunA17_Chr6g0487071 | 39.535 | 301 | 101 | 7 | 22 | 268 | 134 | 407 | 3.27e-55 | 185 |
| Msa1268160 | MtrunA17_Chr8g0340741 | 38.591 | 298 | 102 | 7 | 25 | 268 | 138 | 408 | 9.60e-55 | 184 |
| Msa1268160 | MtrunA17_Chr5g0396421 | 36.301 | 292 | 106 | 9 | 22 | 261 | 136 | 399 | 9.72e-42 | 149 |
| Msa1268160 | MtrunA17_Chr4g0054541 | 37.705 | 183 | 78 | 5 | 62 | 240 | 5 | 155 | 9.94e-30 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268160 | AT1G47840.1 | 43.098 | 297 | 88 | 7 | 25 | 268 | 142 | 410 | 7.79e-62 | 202 |
| Msa1268160 | AT2G19860.2 | 39.865 | 296 | 97 | 7 | 27 | 268 | 32 | 300 | 5.66e-56 | 185 |
| Msa1268160 | AT2G19860.1 | 39.865 | 296 | 97 | 7 | 27 | 268 | 141 | 409 | 7.64e-55 | 184 |
| Msa1268160 | AT4G29130.1 | 39.322 | 295 | 98 | 7 | 28 | 268 | 142 | 409 | 5.21e-53 | 179 |
| Msa1268160 | AT1G47840.2 | 46.970 | 198 | 51 | 4 | 25 | 169 | 142 | 338 | 6.97e-45 | 155 |
| Msa1268160 | AT1G50460.3 | 37.981 | 208 | 100 | 3 | 62 | 268 | 151 | 330 | 4.92e-38 | 138 |
| Msa1268160 | AT1G50460.1 | 38.462 | 208 | 99 | 3 | 62 | 268 | 227 | 406 | 1.36e-37 | 139 |
| Msa1268160 | AT1G47845.1 | 46.154 | 156 | 58 | 3 | 113 | 268 | 40 | 169 | 1.22e-36 | 129 |
| Msa1268160 | AT3G20040.1 | 30.195 | 308 | 126 | 6 | 7 | 261 | 129 | 400 | 1.58e-36 | 135 |
| Msa1268160 | AT4G37840.1 | 38.542 | 192 | 89 | 5 | 62 | 251 | 228 | 392 | 5.48e-32 | 123 |
| Msa1268160 | AT1G50460.2 | 50.893 | 112 | 54 | 1 | 62 | 172 | 227 | 338 | 1.09e-30 | 118 |
Find 80 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTATCAAATACAGTTAA+AGG | 0.151018 | 8_3:-1131178 | None:intergenic |
| CTGTTTGATTTCATTGCTTT+GGG | 0.156073 | 8_3:+1129573 | Msa1268160:CDS |
| ATCTTCTTTGTCCACAAATT+TGG | 0.156563 | 8_3:-1129601 | None:intergenic |
| TGTAAATTGTAAGCATATTT+TGG | 0.164201 | 8_3:-1131814 | None:intergenic |
| AGAAACATGGCCTTGTAATT+TGG | 0.165747 | 8_3:-1131000 | None:intergenic |
| TGTTTCTTCTTCTGGTAAAA+TGG | 0.207744 | 8_3:+1131016 | Msa1268160:CDS |
| CAAGGCCATGTTTCTTCTTC+TGG | 0.211056 | 8_3:+1131008 | Msa1268160:CDS |
| GACTCAAAAGGTGTTATCTT+TGG | 0.251344 | 8_3:+1132198 | Msa1268160:three_prime_UTR |
| GCTGTTTGATTTCATTGCTT+TGG | 0.257650 | 8_3:+1129572 | Msa1268160:CDS |
| GAAACATGGCCTTGTAATTT+GGG | 0.287932 | 8_3:-1130999 | None:intergenic |
| CCAATCTCTCTCTTTCTTCC+TGG | 0.295285 | 8_3:-1129642 | None:intergenic |
| TTCAACTAGTATTTAATCAT+TGG | 0.316811 | 8_3:+1132425 | Msa1268160:three_prime_UTR |
| TGCTGCATGGCGCTTAGATC+CGG | 0.320311 | 8_3:-1131855 | None:intergenic |
| TCAAAAGATGGTTCAGGTAT+TGG | 0.321089 | 8_3:+1132348 | Msa1268160:three_prime_UTR |
| CCAGGAAGAAAGAGAGAGAT+TGG | 0.386101 | 8_3:+1129642 | Msa1268160:CDS |
| GCTGCATGGCGCTTAGATCC+GGG | 0.391118 | 8_3:-1131854 | None:intergenic |
| AGATACACTTTGTGTTTGTA+AGG | 0.396369 | 8_3:+1131748 | Msa1268160:CDS |
| CTTGCCGGTGCAGGAATTGT+AGG | 0.410547 | 8_3:+1132153 | Msa1268160:CDS |
| CTCTATCAAATACAGTTAAA+GGG | 0.412605 | 8_3:-1131177 | None:intergenic |
| AACTGTATTTGATAGAGAAA+TGG | 0.419441 | 8_3:+1131183 | Msa1268160:CDS |
| GAGACGAGTGCTAGTCAATA+TGG | 0.421859 | 8_3:+1131388 | Msa1268160:CDS |
| TGCTCAATCTTGTTTGTACA+TGG | 0.425914 | 8_3:-1132397 | None:intergenic |
| GAACATTCAAAAGATGGTTC+AGG | 0.429010 | 8_3:+1132342 | Msa1268160:three_prime_UTR |
| AAAGCGAGGTGGTAGCTTGC+CGG | 0.429514 | 8_3:+1132138 | Msa1268160:CDS |
| AGAGGTGTTGTTGCCATTGA+TGG | 0.432177 | 8_3:+1132225 | Msa1268160:three_prime_UTR |
| GTGATAGAACATTCAAAAGA+TGG | 0.439467 | 8_3:+1132336 | Msa1268160:three_prime_UTR |
| AGGTATTGGAGGTGCTCTAT+TGG | 0.445879 | 8_3:+1132362 | Msa1268160:three_prime_UTR |
| AGGTGGTAGCTTGCCGGTGC+AGG | 0.449812 | 8_3:+1132144 | Msa1268160:CDS |
| ATGAAAATTATCCTCAATAC+AGG | 0.454747 | 8_3:+1132256 | Msa1268160:three_prime_UTR |
| GCCATGCAGCAAGATAATTC+TGG | 0.458132 | 8_3:+1131867 | Msa1268160:CDS |
| ACAATCTCAGGAATGTATCT+AGG | 0.472627 | 8_3:+1131356 | Msa1268160:CDS |
| GGAAGAGTGTGGACATAAGT+TGG | 0.478490 | 8_3:-1127968 | None:intergenic |
| CTGGCGATTTACAAGCAGTT+GGG | 0.483122 | 8_3:+1131886 | Msa1268160:CDS |
| GCTAGTCAATATGGCTAAAG+AGG | 0.497774 | 8_3:+1131397 | Msa1268160:CDS |
| CTAGTATTTAATCATTGGAA+TGG | 0.504269 | 8_3:+1132430 | Msa1268160:three_prime_UTR |
| GAGGTGTTGTTGCCATTGAT+GGG | 0.504662 | 8_3:+1132226 | Msa1268160:three_prime_UTR |
| TTTGGGGCTAGCCAAATTTG+TGG | 0.509779 | 8_3:+1129590 | Msa1268160:CDS |
| TCCCTCCTCTATGATAAAGC+AGG | 0.511452 | 8_3:+1131909 | Msa1268160:CDS |
| GGTGTTATCTTTGGAAAGAG+AGG | 0.513273 | 8_3:+1132207 | Msa1268160:three_prime_UTR |
| TATGTCCACACTCTTCCCTC+CGG | 0.526387 | 8_3:+1127974 | Msa1268160:CDS |
| TGGACATAAGTTGGTATCAT+GGG | 0.526568 | 8_3:-1127959 | None:intergenic |
| TCTGGCGATTTACAAGCAGT+TGG | 0.527066 | 8_3:+1131885 | Msa1268160:CDS |
| TGCAAGTAAGTCCTGTATTG+AGG | 0.528492 | 8_3:-1132267 | None:intergenic |
| TTACCCCTGCTTTATCATAG+AGG | 0.528899 | 8_3:-1131914 | None:intergenic |
| TTGCCGGTGCAGGAATTGTA+GGG | 0.531300 | 8_3:+1132154 | Msa1268160:CDS |
| GTGGACATAAGTTGGTATCA+TGG | 0.531624 | 8_3:-1127960 | None:intergenic |
| GTCAATATGGCTAAAGAGGA+AGG | 0.546836 | 8_3:+1131401 | Msa1268160:CDS |
| TCAGATCATTAGTACTGAGT+GGG | 0.549065 | 8_3:+1131135 | Msa1268160:intron |
| ATGGCCTTGTAATTTGGGAA+TGG | 0.553947 | 8_3:-1130994 | None:intergenic |
| TGTTTGATTTCATTGCTTTG+GGG | 0.556589 | 8_3:+1129574 | Msa1268160:CDS |
| AGTGCCATTCCCAAATTACA+AGG | 0.562170 | 8_3:+1130990 | Msa1268160:CDS |
| CGAAAACTTACATGGTGACC+AGG | 0.563070 | 8_3:-1131223 | None:intergenic |
| GCCAGAATTATCTTGCTGCA+TGG | 0.563415 | 8_3:-1131868 | None:intergenic |
| AAAGATGGTTCAGGTATTGG+AGG | 0.563572 | 8_3:+1132351 | Msa1268160:three_prime_UTR |
| TTACTTGCAAGATTCAGTAA+AGG | 0.568226 | 8_3:+1132281 | Msa1268160:three_prime_UTR |
| AGGTGTTGTTGCCATTGATG+GGG | 0.572480 | 8_3:+1132227 | Msa1268160:three_prime_UTR |
| GATACTGTCGGAACACTAGC+CGG | 0.573684 | 8_3:+1130888 | Msa1268160:CDS |
| ATGTCCACACTCTTCCCTCC+GGG | 0.574160 | 8_3:+1127975 | Msa1268160:CDS |
| AATCCCTACAATTCCTGCAC+CGG | 0.577992 | 8_3:-1132157 | None:intergenic |
| CCCCTGCTTTATCATAGAGG+AGG | 0.578706 | 8_3:-1131911 | None:intergenic |
| ATCTCTCTCTTTCTTCCTGG+AGG | 0.580253 | 8_3:-1129639 | None:intergenic |
| CTGCATGGCGCTTAGATCCG+GGG | 0.580837 | 8_3:-1131853 | None:intergenic |
| CCCTGCTTTATCATAGAGGA+GGG | 0.582109 | 8_3:-1131910 | None:intergenic |
| AAAATGGAAGAAGACTCAAA+AGG | 0.582348 | 8_3:+1132186 | Msa1268160:three_prime_UTR |
| ATTGTCGTAGTATTCTGCTC+CGG | 0.591120 | 8_3:-1130907 | None:intergenic |
| ATACTACGACAATGATGCTA+AGG | 0.592137 | 8_3:+1130917 | Msa1268160:CDS |
| CCCTCCTCTATGATAAAGCA+GGG | 0.592227 | 8_3:+1131910 | Msa1268160:CDS |
| GATGCTGCTGGTATAAATCC+TGG | 0.595310 | 8_3:+1131205 | Msa1268160:CDS |
| GGTGTTGTTGCCATTGATGG+GGG | 0.606184 | 8_3:+1132228 | Msa1268160:three_prime_UTR |
| GATAGAGAAATGGATGCTGC+TGG | 0.610170 | 8_3:+1131193 | Msa1268160:CDS |
| TTCAGATCATTAGTACTGAG+TGG | 0.635066 | 8_3:+1131134 | Msa1268160:intron |
| TGATAGGTTAATGATACTGT+CGG | 0.637284 | 8_3:+1130876 | Msa1268160:intron |
| TGCGACACAATTGTAAAGCG+AGG | 0.658970 | 8_3:+1132124 | Msa1268160:CDS |
| CAGATCATTAGTACTGAGTG+GGG | 0.682773 | 8_3:+1131136 | Msa1268160:intron |
| AAAACATAGACATACCCGGA+GGG | 0.687562 | 8_3:-1127989 | None:intergenic |
| CATACCCGGAGGGAAGAGTG+TGG | 0.694972 | 8_3:-1127979 | None:intergenic |
| ATAGAAAACATAGACATACC+CGG | 0.700483 | 8_3:-1127993 | None:intergenic |
| CCTCCTCTATGATAAAGCAG+GGG | 0.712381 | 8_3:+1131911 | Msa1268160:CDS |
| GACACAATTGTAAAGCGAGG+TGG | 0.713641 | 8_3:+1132127 | Msa1268160:CDS |
| GAAAACATAGACATACCCGG+AGG | 0.794091 | 8_3:-1127990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATATATAAATAAATATTG+TGG | - | chr8_3:1128061-1128080 | None:intergenic | 10.0% |
| !! | TATATTAAAATATTTGTATG+CGG | - | chr8_3:1128636-1128655 | None:intergenic | 10.0% |
| !! | TTATAAAAAAAATAATAGTG+CGG | - | chr8_3:1128801-1128820 | None:intergenic | 10.0% |
| !! | TAAAAATATGATAAAATGAT+AGG | - | chr8_3:1128849-1128868 | None:intergenic | 10.0% |
| !! | TTCTATAACAAAAAATAAAA+TGG | - | chr8_3:1129430-1129449 | None:intergenic | 10.0% |
| !!! | TTATTTTTTAATTAAACACA+CGG | - | chr8_3:1131533-1131552 | None:intergenic | 10.0% |
| !!! | AAAATAAATAATCTTATTTG+TGG | + | chr8_3:1131546-1131565 | Msa1268160:intron | 10.0% |
| !!! | AATTTACAAATAAATTTTAC+AGG | + | chr8_3:1131829-1131848 | Msa1268160:CDS | 10.0% |
| !! | AATAATAAAAAACACAAACA+AGG | - | chr8_3:1128108-1128127 | None:intergenic | 15.0% |
| !! | TATTATTGATATGATGATAT+AGG | + | chr8_3:1128121-1128140 | Msa1268160:intron | 15.0% |
| !!! | ATATAATTTTATCTTTGGAT+CGG | + | chr8_3:1129004-1129023 | Msa1268160:intron | 15.0% |
| !!! | ATGTTTTCTTAATACTAATT+GGG | + | chr8_3:1129526-1129545 | Msa1268160:intron | 15.0% |
| !! | AAATATAGAACTCTAATTAA+TGG | - | chr8_3:1130640-1130659 | None:intergenic | 15.0% |
| !! | ATTAATTAGAGTTCTATATT+TGG | + | chr8_3:1130639-1130658 | Msa1268160:intron | 15.0% |
| !! | TTATTTGAACAAAGAAATAA+AGG | - | chr8_3:1131063-1131082 | None:intergenic | 15.0% |
| !!! | TAATTATAAATAGAAGGTGT+GGG | - | chr8_3:1128440-1128459 | None:intergenic | 20.0% |
| !! | ACACCTTCTATTTATAATTA+GGG | + | chr8_3:1128440-1128459 | Msa1268160:intron | 20.0% |
| !! | TCCAAAGATAAAATTATATG+CGG | - | chr8_3:1129003-1129022 | None:intergenic | 20.0% |
| !! | TTGTAAAACCATCATAAATA+GGG | - | chr8_3:1129074-1129093 | None:intergenic | 20.0% |
| !! | GTAAAACCATTATAAATAGA+AGG | - | chr8_3:1129201-1129220 | None:intergenic | 20.0% |
| !!! | GATGTTTTCTTAATACTAAT+TGG | + | chr8_3:1129525-1129544 | Msa1268160:intron | 20.0% |
| !! | TATATAAACACTTACTAGTT+GGG | - | chr8_3:1129832-1129851 | None:intergenic | 20.0% |
| !! | TTATATAAACACTTACTAGT+TGG | - | chr8_3:1129833-1129852 | None:intergenic | 20.0% |
| !! | AACTAGTAAGTGTTTATATA+AGG | + | chr8_3:1129832-1129851 | Msa1268160:intron | 20.0% |
| !! | ACTAGTAAGTGTTTATATAA+GGG | + | chr8_3:1129833-1129852 | Msa1268160:intron | 20.0% |
| !! | AAAATTCAAACTCTTTACAT+AGG | + | chr8_3:1130679-1130698 | Msa1268160:intron | 20.0% |
| !! | TAAATATACAAATGCAGTAT+TGG | + | chr8_3:1130826-1130845 | Msa1268160:intron | 20.0% |
| !! | ATGCATATTAAAATGTGAAA+GGG | - | chr8_3:1131453-1131472 | None:intergenic | 20.0% |
| !!! | TGTAAATTGTAAGCATATTT+TGG | - | chr8_3:1131817-1131836 | None:intergenic | 20.0% |
| !!! | GCAGATAATTTAAAATACTA+AGG | - | chr8_3:1131987-1132006 | None:intergenic | 20.0% |
| !! | AGATTAATATGTACTTTCTT+GGG | - | chr8_3:1132009-1132028 | None:intergenic | 20.0% |
| !! | TTCAACTAGTATTTAATCAT+TGG | + | chr8_3:1132425-1132444 | Msa1268160:three_prime_UTR | 20.0% |
| ! | TAAATATTTATGAGACTCAC+CGG | + | chr8_3:1128298-1128317 | Msa1268160:intron | 25.0% |
| ! | CTAATTATAAATAGAAGGTG+TGG | - | chr8_3:1128441-1128460 | None:intergenic | 25.0% |
| ! | CACACCTTCTATTTATAATT+AGG | + | chr8_3:1128439-1128458 | Msa1268160:intron | 25.0% |
| ! | CACCTTCTATTTATAATTAG+GGG | + | chr8_3:1128441-1128460 | Msa1268160:intron | 25.0% |
| !! | CAAACACATCCAATAATTTT+CGG | - | chr8_3:1128535-1128554 | None:intergenic | 25.0% |
| ! | TAAAATATTTGTATGCGGTT+CGG | - | chr8_3:1128631-1128650 | None:intergenic | 25.0% |
| ! | CAAATTAATGCGGTTTAATT+TGG | - | chr8_3:1128930-1128949 | None:intergenic | 25.0% |
| ! | CAAATTAAACCGCATTAATT+TGG | + | chr8_3:1128928-1128947 | Msa1268160:intron | 25.0% |
| ! | AGATAAAATTATATGCGGTT+CGG | - | chr8_3:1128998-1129017 | None:intergenic | 25.0% |
| !! | ACCGCATATAATTTTATCTT+TGG | + | chr8_3:1128999-1129018 | Msa1268160:intron | 25.0% |
| ! | TGTAAAACCATCATAAATAG+GGG | - | chr8_3:1129073-1129092 | None:intergenic | 25.0% |
| ! | GTTGTAAAACCATCATAAAT+AGG | - | chr8_3:1129075-1129094 | None:intergenic | 25.0% |
| ! | AGAGTAATATCAATCAATCT+AGG | + | chr8_3:1129278-1129297 | Msa1268160:intron | 25.0% |
| ! | AGAGTAATATCAATCAATCT+AGG | + | chr8_3:1129278-1129297 | Msa1268160:intron | 25.0% |
| ! | CTAGGAAGTAGTATAATTAA+AGG | + | chr8_3:1129334-1129353 | Msa1268160:intron | 25.0% |
| ! | TTAAAGTCTAGTGAGAAAAT+TGG | + | chr8_3:1129733-1129752 | Msa1268160:intron | 25.0% |
| ! | ATATAAACACTTACTAGTTG+GGG | - | chr8_3:1129831-1129850 | None:intergenic | 25.0% |
| !! | TTTTCTTAGTTGGAAATATC+CGG | - | chr8_3:1130028-1130047 | None:intergenic | 25.0% |
| !! | AAGAACGATTTAAAATCGAA+GGG | - | chr8_3:1130244-1130263 | None:intergenic | 25.0% |
| !!! | AAATGCAGTATTGGTATAAA+TGG | + | chr8_3:1130835-1130854 | Msa1268160:intron | 25.0% |
| ! | CTCTATCAAATACAGTTAAA+GGG | - | chr8_3:1131180-1131199 | None:intergenic | 25.0% |
| ! | TCTCTATCAAATACAGTTAA+AGG | - | chr8_3:1131181-1131200 | None:intergenic | 25.0% |
| ! | AACTGTATTTGATAGAGAAA+TGG | + | chr8_3:1131183-1131202 | Msa1268160:CDS | 25.0% |
| !!! | CTCACTTGTTTTCTATATAA+GGG | - | chr8_3:1131292-1131311 | None:intergenic | 25.0% |
| !!! | ACTCACTTGTTTTCTATATA+AGG | - | chr8_3:1131293-1131312 | None:intergenic | 25.0% |
| ! | CATGCATATTAAAATGTGAA+AGG | - | chr8_3:1131454-1131473 | None:intergenic | 25.0% |
| !!! | TTGATCGCTTTTAATTCTAT+AGG | + | chr8_3:1131575-1131594 | Msa1268160:intron | 25.0% |
| ! | TGATTGATATTACGAATGAT+AGG | - | chr8_3:1131614-1131633 | None:intergenic | 25.0% |
| !!! | ATGGATCACAAAGTTTTATA+TGG | - | chr8_3:1131640-1131659 | None:intergenic | 25.0% |
| ! | AAATAGTATAAACGGATATG+TGG | - | chr8_3:1131669-1131688 | None:intergenic | 25.0% |
| ! | GAGATTAATATGTACTTTCT+TGG | - | chr8_3:1132010-1132029 | None:intergenic | 25.0% |
| !! | TGTTTTTCTTTCACTTAGAT+TGG | - | chr8_3:1132092-1132111 | None:intergenic | 25.0% |
| ! | ATGAAAATTATCCTCAATAC+AGG | + | chr8_3:1132256-1132275 | Msa1268160:three_prime_UTR | 25.0% |
| ! | CTAGTATTTAATCATTGGAA+TGG | + | chr8_3:1132430-1132449 | Msa1268160:three_prime_UTR | 25.0% |
| !! | AATATTCATAACGTTTTCTC+AGG | + | chr8_3:1132458-1132477 | Msa1268160:three_prime_UTR | 25.0% |
| ATAGAAAACATAGACATACC+CGG | - | chr8_3:1127996-1128015 | None:intergenic | 30.0% | |
| TGATGATATAGGAATGAGAA+AGG | + | chr8_3:1128132-1128151 | Msa1268160:intron | 30.0% | |
| GATGATATAGGAATGAGAAA+GGG | + | chr8_3:1128133-1128152 | Msa1268160:intron | 30.0% | |
| !! | TTGTTTTATGCATTGGATCT+TGG | + | chr8_3:1128156-1128175 | Msa1268160:intron | 30.0% |
| AAATATTTATGAGACTCACC+GGG | + | chr8_3:1128299-1128318 | Msa1268160:intron | 30.0% | |
| CACCCCTAATTATAAATAGA+AGG | - | chr8_3:1128446-1128465 | None:intergenic | 30.0% | |
| !! | TTTGCGGTTTTTATTTGGAT+CGG | - | chr8_3:1128481-1128500 | None:intergenic | 30.0% |
| !! | CAATAATTTTCGGTTTTGTG+CGG | - | chr8_3:1128525-1128544 | None:intergenic | 30.0% |
| CGAAAATTATTGGATGTGTT+TGG | + | chr8_3:1128533-1128552 | Msa1268160:intron | 30.0% | |
| !!! | GTTTAATTTGGATCGGTTTT+TGG | - | chr8_3:1128918-1128937 | None:intergenic | 30.0% |
| !! | TAATGCGGTTTAATTTGGAT+CGG | - | chr8_3:1128925-1128944 | None:intergenic | 30.0% |
| ! | TAAACCGCATTAATTTGGAT+CGG | + | chr8_3:1128933-1128952 | Msa1268160:intron | 30.0% |
| ! | CCATTATAAATAGAAGGTGT+GGG | - | chr8_3:1129195-1129214 | None:intergenic | 30.0% |
| ACCATTATAAATAGAAGGTG+TGG | - | chr8_3:1129196-1129215 | None:intergenic | 30.0% | |
| ! | TGAGTTTTTGTAATCTCTCT+TGG | - | chr8_3:1129391-1129410 | None:intergenic | 30.0% |
| GATGATGATATAATATACGC+AGG | + | chr8_3:1129548-1129567 | Msa1268160:intron | 30.0% | |
| ! | CTGTTTGATTTCATTGCTTT+GGG | + | chr8_3:1129573-1129592 | Msa1268160:CDS | 30.0% |
| ! | TGTTTGATTTCATTGCTTTG+GGG | + | chr8_3:1129574-1129593 | Msa1268160:CDS | 30.0% |
| ATCTTCTTTGTCCACAAATT+TGG | - | chr8_3:1129604-1129623 | None:intergenic | 30.0% | |
| ! | TCAATAGAAGTTTGTTTGAC+AGG | - | chr8_3:1129684-1129703 | None:intergenic | 30.0% |
| !! | AAACAAACTTCTATTGACTC+TGG | + | chr8_3:1129687-1129706 | Msa1268160:intron | 30.0% |
| AGTAAGTGTTTATATAAGGG+TGG | + | chr8_3:1129836-1129855 | Msa1268160:intron | 30.0% | |
| GTAAGTGTTTATATAAGGGT+GGG | + | chr8_3:1129837-1129856 | Msa1268160:intron | 30.0% | |
| TAAGTGTTTATATAAGGGTG+GGG | + | chr8_3:1129838-1129857 | Msa1268160:intron | 30.0% | |
| TTAATCCTTAAGCAAAGCAA+AGG | - | chr8_3:1130053-1130072 | None:intergenic | 30.0% | |
| ! | GAAGAACGATTTAAAATCGA+AGG | - | chr8_3:1130245-1130264 | None:intergenic | 30.0% |
| TTATACCGAACGAAATTACT+GGG | - | chr8_3:1130519-1130538 | None:intergenic | 30.0% | |
| ATTATACCGAACGAAATTAC+TGG | - | chr8_3:1130520-1130539 | None:intergenic | 30.0% | |
| GAAAAACAACACTAATCAAG+TGG | + | chr8_3:1130549-1130568 | Msa1268160:intron | 30.0% | |
| TTCAAACTCTTTACATAGGT+AGG | + | chr8_3:1130683-1130702 | Msa1268160:intron | 30.0% | |
| CTAATAATTTCCTACCTGAT+AGG | + | chr8_3:1130860-1130879 | Msa1268160:intron | 30.0% | |
| TGATAGGTTAATGATACTGT+CGG | + | chr8_3:1130876-1130895 | Msa1268160:intron | 30.0% | |
| ! | TTTTACCAGAAGAAGAAACA+TGG | - | chr8_3:1131016-1131035 | None:intergenic | 30.0% |
| TGTTTCTTCTTCTGGTAAAA+TGG | + | chr8_3:1131016-1131035 | Msa1268160:CDS | 30.0% | |
| GGTAAAATGGTTAGTAAAAG+TGG | + | chr8_3:1131029-1131048 | Msa1268160:intron | 30.0% | |
| CAACAACATTACAATATCGA+TGG | - | chr8_3:1131251-1131270 | None:intergenic | 30.0% | |
| !! | ATTTTTGAGAAGACAATCTC+AGG | + | chr8_3:1131344-1131363 | Msa1268160:CDS | 30.0% |
| ATGCATGCATAAATATTCCT+TGG | + | chr8_3:1131467-1131486 | Msa1268160:intron | 30.0% | |
| AATATTCCTTGGTCACTATA+TGG | + | chr8_3:1131478-1131497 | Msa1268160:intron | 30.0% | |
| AACGGATATGTGGATTTATA+TGG | - | chr8_3:1131659-1131678 | None:intergenic | 30.0% | |
| AGATACACTTTGTGTTTGTA+AGG | + | chr8_3:1131748-1131767 | Msa1268160:CDS | 30.0% | |
| ! | AAATAAATTTTACAGGACCC+CGG | + | chr8_3:1131836-1131855 | Msa1268160:CDS | 30.0% |
| ! | TGAAAGAAAAACAGTTCTAG+AGG | + | chr8_3:1132099-1132118 | Msa1268160:CDS | 30.0% |
| AAAATGGAAGAAGACTCAAA+AGG | + | chr8_3:1132186-1132205 | Msa1268160:three_prime_UTR | 30.0% | |
| TTACTTGCAAGATTCAGTAA+AGG | + | chr8_3:1132281-1132300 | Msa1268160:three_prime_UTR | 30.0% | |
| GTGATAGAACATTCAAAAGA+TGG | + | chr8_3:1132336-1132355 | Msa1268160:three_prime_UTR | 30.0% | |
| !! | GAAAGGGTTGTTTTATGCAT+TGG | + | chr8_3:1128149-1128168 | Msa1268160:intron | 35.0% |
| !! | GTTGTTTTCATAAGTTCTCC+CGG | - | chr8_3:1128320-1128339 | None:intergenic | 35.0% |
| !! | GGTTTTTATTTGGATCGGTT+TGG | - | chr8_3:1128476-1128495 | None:intergenic | 35.0% |
| !!! | ATCGGTTTGCGGTTTTTATT+TGG | - | chr8_3:1128486-1128505 | None:intergenic | 35.0% |
| !!! | GGTTTTCGGTTTTTTTGGAT+CGG | - | chr8_3:1128504-1128523 | None:intergenic | 35.0% |
| CGCACAAAACCGAAAATTAT+TGG | + | chr8_3:1128523-1128542 | Msa1268160:intron | 35.0% | |
| !! | AAATTATATGCGGTTCGGTT+CGG | - | chr8_3:1128993-1129012 | None:intergenic | 35.0% |
| CCCACACCTTCTATTTATAA+TGG | + | chr8_3:1128437-1128456 | Msa1268160:intron | 35.0% | |
| ! | TAATTAGTAAGCACTAGCCT+AGG | + | chr8_3:1129240-1129259 | Msa1268160:intron | 35.0% |
| ! | CTTAGAGTATTCAACTTCCT+AGG | - | chr8_3:1129260-1129279 | None:intergenic | 35.0% |
| TTAACATGCAATGCAAGCTT+TGG | - | chr8_3:1129499-1129518 | None:intergenic | 35.0% | |
| ! | GCTGTTTGATTTCATTGCTT+TGG | + | chr8_3:1129572-1129591 | Msa1268160:CDS | 35.0% |
| ! | GATAGATTTCATTTTCCTCC+AGG | + | chr8_3:1129624-1129643 | Msa1268160:CDS | 35.0% |
| ACTATGAGAAACTAGTGTGT+GGG | + | chr8_3:1129770-1129789 | Msa1268160:intron | 35.0% | |
| GACTTAAAAATGTCCCACAT+TGG | + | chr8_3:1129798-1129817 | Msa1268160:intron | 35.0% | |
| AGAGTTCGTGAGAATTACTT+GGG | - | chr8_3:1130138-1130157 | None:intergenic | 35.0% | |
| ! | AAGCATCAACTGTGAGATTT+TGG | - | chr8_3:1130199-1130218 | None:intergenic | 35.0% |
| AACGATTGAACCATACTTTG+AGG | + | chr8_3:1130339-1130358 | Msa1268160:intron | 35.0% | |
| GAGAATTACACCTCAAAGTA+TGG | - | chr8_3:1130352-1130371 | None:intergenic | 35.0% | |
| ATATACTCGTAACAGTGATC+TGG | + | chr8_3:1130394-1130413 | Msa1268160:intron | 35.0% | |
| TATACTCGTAACAGTGATCT+GGG | + | chr8_3:1130395-1130414 | Msa1268160:intron | 35.0% | |
| TGTAGTTGCTTGTTTAAACG+AGG | + | chr8_3:1130712-1130731 | Msa1268160:intron | 35.0% | |
| GTATCATTAACCTATCAGGT+AGG | - | chr8_3:1130873-1130892 | None:intergenic | 35.0% | |
| GACAGTATCATTAACCTATC+AGG | - | chr8_3:1130877-1130896 | None:intergenic | 35.0% | |
| ATACTACGACAATGATGCTA+AGG | + | chr8_3:1130917-1130936 | Msa1268160:CDS | 35.0% | |
| !!! | GCTAAGGTTGCTGTTATTTT+AGG | + | chr8_3:1130933-1130952 | Msa1268160:CDS | 35.0% |
| !!! | GTTGCTGTTATTTTAGGAAC+TGG | + | chr8_3:1130939-1130958 | Msa1268160:CDS | 35.0% |
| !! | GAAACATGGCCTTGTAATTT+GGG | - | chr8_3:1131002-1131021 | None:intergenic | 35.0% |
| !! | AGAAACATGGCCTTGTAATT+TGG | - | chr8_3:1131003-1131022 | None:intergenic | 35.0% |
| ! | TTCAGATCATTAGTACTGAG+TGG | + | chr8_3:1131134-1131153 | Msa1268160:intron | 35.0% |
| ! | TCAGATCATTAGTACTGAGT+GGG | + | chr8_3:1131135-1131154 | Msa1268160:intron | 35.0% |
| ACAATCTCAGGAATGTATCT+AGG | + | chr8_3:1131356-1131375 | Msa1268160:CDS | 35.0% | |
| GCTAAAGAGGAAGGTTTATT+TGG | + | chr8_3:1131410-1131429 | Msa1268160:intron | 35.0% | |
| CACGGTAATTCAACAGTTAT+TGG | - | chr8_3:1131515-1131534 | None:intergenic | 35.0% | |
| TAGATTGGATTCAACCTGAA+TGG | - | chr8_3:1132077-1132096 | None:intergenic | 35.0% | |
| TGTAGGGATTCTGCAAAAAA+TGG | + | chr8_3:1132170-1132189 | Msa1268160:exon | 35.0% | |
| !! | GACTCAAAAGGTGTTATCTT+TGG | + | chr8_3:1132198-1132217 | Msa1268160:three_prime_UTR | 35.0% |
| GAACATTCAAAAGATGGTTC+AGG | + | chr8_3:1132342-1132361 | Msa1268160:three_prime_UTR | 35.0% | |
| TCAAAAGATGGTTCAGGTAT+TGG | + | chr8_3:1132348-1132367 | Msa1268160:three_prime_UTR | 35.0% | |
| ! | TGCTCAATCTTGTTTGTACA+TGG | - | chr8_3:1132400-1132419 | None:intergenic | 35.0% |
| AAAACATAGACATACCCGGA+GGG | - | chr8_3:1127992-1128011 | None:intergenic | 40.0% | |
| GTAGCAAACATGAGATCATG+AGG | - | chr8_3:1128228-1128247 | None:intergenic | 40.0% | |
| ! | TCTCATGTTTGCTACGTCTA+AGG | + | chr8_3:1128233-1128252 | Msa1268160:intron | 40.0% |
| !!! | GGTTTTTTTGGATCGGTTTG+CGG | - | chr8_3:1128497-1128516 | None:intergenic | 40.0% |
| ! | TGTGCGGTTTTCGGTTTTTT+TGG | - | chr8_3:1128509-1128528 | None:intergenic | 40.0% |
| !! | TTTCGGTTTTGTGCGGTTTT+CGG | - | chr8_3:1128518-1128537 | None:intergenic | 40.0% |
| ! | GACATTTTGTGAAAACCGCT+TGG | + | chr8_3:1128558-1128577 | Msa1268160:intron | 40.0% |
| TTTGTGAAAACCGCTTGGAT+TGG | + | chr8_3:1128563-1128582 | Msa1268160:intron | 40.0% | |
| AAAATCCGATCCAATCCAAG+CGG | - | chr8_3:1128576-1128595 | None:intergenic | 40.0% | |
| !! | TATTTGTATGCGGTTCGGTT+CGG | - | chr8_3:1128626-1128645 | None:intergenic | 40.0% |
| CGATCCGATCCAAATTAATG+CGG | - | chr8_3:1128940-1128959 | None:intergenic | 40.0% | |
| ! | CGCATTAATTTGGATCGGAT+CGG | + | chr8_3:1128938-1128957 | Msa1268160:intron | 40.0% |
| TAATTTGGATCGGATCGGAT+CGG | + | chr8_3:1128943-1128962 | Msa1268160:intron | 40.0% | |
| !! | ATCATAAATAGGGGTGTTCG+TGG | - | chr8_3:1129064-1129083 | None:intergenic | 40.0% |
| ACGAACACCCCTATTTATGA+TGG | + | chr8_3:1129063-1129082 | Msa1268160:intron | 40.0% | |
| !! | AATGCAAGCTTTGGCTTGTA+GGG | - | chr8_3:1129490-1129509 | None:intergenic | 40.0% |
| GACTCTGGCATACTAATTGT+TGG | + | chr8_3:1129702-1129721 | Msa1268160:intron | 40.0% | |
| CACTATGAGAAACTAGTGTG+TGG | + | chr8_3:1129769-1129788 | Msa1268160:intron | 40.0% | |
| GTTCACCCGTTCACAAAAAT+GGG | - | chr8_3:1129892-1129911 | None:intergenic | 40.0% | |
| TATCCGGAAGTTTCTTGGAT+CGG | - | chr8_3:1130012-1130031 | None:intergenic | 40.0% | |
| GGAAATATCCGGAAGTTTCT+TGG | - | chr8_3:1130017-1130036 | None:intergenic | 40.0% | |
| !!! | AGCAAAGGCGTTTTCTTAGT+TGG | - | chr8_3:1130038-1130057 | None:intergenic | 40.0% |
| AAACGCCTTTGCTTTGCTTA+AGG | + | chr8_3:1130045-1130064 | Msa1268160:intron | 40.0% | |
| GAGTTCGTGAGAATTACTTG+GGG | - | chr8_3:1130137-1130156 | None:intergenic | 40.0% | |
| CAGAGTTCGTGAGAATTACT+TGG | - | chr8_3:1130139-1130158 | None:intergenic | 40.0% | |
| TCACGAACTCTGCCTATAAA+AGG | + | chr8_3:1130147-1130166 | Msa1268160:intron | 40.0% | |
| !! | TTTTGGTGTGAAGAGTGAGT+GGG | - | chr8_3:1130182-1130201 | None:intergenic | 40.0% |
| !! | ATTTTGGTGTGAAGAGTGAG+TGG | - | chr8_3:1130183-1130202 | None:intergenic | 40.0% |
| TAGTCTACCTTGCACAAACT+AGG | + | chr8_3:1130447-1130466 | Msa1268160:intron | 40.0% | |
| AGTCTACCTTGCACAAACTA+GGG | + | chr8_3:1130448-1130467 | Msa1268160:intron | 40.0% | |
| !! | GCTTTCTTTAAGACGTTTCG+CGG | - | chr8_3:1130479-1130498 | None:intergenic | 40.0% |
| ACTCACCCAGTAATTTCGTT+CGG | + | chr8_3:1130511-1130530 | Msa1268160:intron | 40.0% | |
| AACACTAATCAAGTGGACCA+AGG | + | chr8_3:1130556-1130575 | Msa1268160:intron | 40.0% | |
| ACACTAATCAAGTGGACCAA+GGG | + | chr8_3:1130557-1130576 | Msa1268160:intron | 40.0% | |
| TGCTTGTTTAAACGAGGCTT+TGG | + | chr8_3:1130718-1130737 | Msa1268160:intron | 40.0% | |
| AGATATGCGAGTTTCTGCTT+TGG | + | chr8_3:1130754-1130773 | Msa1268160:intron | 40.0% | |
| ATTGTCGTAGTATTCTGCTC+CGG | - | chr8_3:1130910-1130929 | None:intergenic | 40.0% | |
| ! | AGTGCCATTCCCAAATTACA+AGG | + | chr8_3:1130990-1131009 | Msa1268160:CDS | 40.0% |
| !! | ATGGCCTTGTAATTTGGGAA+TGG | - | chr8_3:1130997-1131016 | None:intergenic | 40.0% |
| ! | CAGATCATTAGTACTGAGTG+GGG | + | chr8_3:1131136-1131155 | Msa1268160:intron | 40.0% |
| GCTAGTCAATATGGCTAAAG+AGG | + | chr8_3:1131397-1131416 | Msa1268160:CDS | 40.0% | |
| GTCAATATGGCTAAAGAGGA+AGG | + | chr8_3:1131401-1131420 | Msa1268160:CDS | 40.0% | |
| TTCTGACCATATAGTGACCA+AGG | - | chr8_3:1131487-1131506 | None:intergenic | 40.0% | |
| TTACCCCTGCTTTATCATAG+AGG | - | chr8_3:1131917-1131936 | None:intergenic | 40.0% | |
| ATGGAACAAGTGAGTGTCAA+GGG | - | chr8_3:1132058-1132077 | None:intergenic | 40.0% | |
| AATGGAACAAGTGAGTGTCA+AGG | - | chr8_3:1132059-1132078 | None:intergenic | 40.0% | |
| ! | GGTGTTATCTTTGGAAAGAG+AGG | + | chr8_3:1132207-1132226 | Msa1268160:three_prime_UTR | 40.0% |
| TTCATACAAACCCCCATCAA+TGG | - | chr8_3:1132241-1132260 | None:intergenic | 40.0% | |
| TGCAAGTAAGTCCTGTATTG+AGG | - | chr8_3:1132270-1132289 | None:intergenic | 40.0% | |
| !! | AAAGATGGTTCAGGTATTGG+AGG | + | chr8_3:1132351-1132370 | Msa1268160:three_prime_UTR | 40.0% |
| ! | GGAAGAGTGTGGACATAAGT+TGG | - | chr8_3:1127971-1127990 | None:intergenic | 45.0% |
| GAAAACATAGACATACCCGG+AGG | - | chr8_3:1127993-1128012 | None:intergenic | 45.0% | |
| ! | GAAAACCGCTTGGATTGGAT+CGG | + | chr8_3:1128568-1128587 | Msa1268160:intron | 45.0% |
| !! | GCTTGGATTGGATCGGATTT+TGG | + | chr8_3:1128575-1128594 | Msa1268160:intron | 45.0% |
| GCTTCAAAACCGATCCAAAC+CGG | + | chr8_3:1129037-1129056 | Msa1268160:intron | 45.0% | |
| !! | CAATGCAAGCTTTGGCTTGT+AGG | - | chr8_3:1129491-1129510 | None:intergenic | 45.0% |
| !! | TTTGGGGCTAGCCAAATTTG+TGG | + | chr8_3:1129590-1129609 | Msa1268160:CDS | 45.0% |
| ATCTCTCTCTTTCTTCCTGG+AGG | - | chr8_3:1129642-1129661 | None:intergenic | 45.0% | |
| CCAATCTCTCTCTTTCTTCC+TGG | - | chr8_3:1129645-1129664 | None:intergenic | 45.0% | |
| CCAGGAAGAAAGAGAGAGAT+TGG | + | chr8_3:1129642-1129661 | Msa1268160:CDS | 45.0% | |
| CACAAAAATGGGTACCCCAA+GGG | - | chr8_3:1129881-1129900 | None:intergenic | 45.0% | |
| TCACAAAAATGGGTACCCCA+AGG | - | chr8_3:1129882-1129901 | None:intergenic | 45.0% | |
| !! | GGGGTACCCATTTTTGTGAA+CGG | + | chr8_3:1129883-1129902 | Msa1268160:intron | 45.0% |
| !! | GGGTACCCATTTTTGTGAAC+GGG | + | chr8_3:1129884-1129903 | Msa1268160:intron | 45.0% |
| CGTTCACCCGTTCACAAAAA+TGG | - | chr8_3:1129893-1129912 | None:intergenic | 45.0% | |
| ATCCGGAAGTTTCTTGGATC+GGG | - | chr8_3:1130011-1130030 | None:intergenic | 45.0% | |
| GCGTAAAACGCGTTTGCTTA+AGG | + | chr8_3:1130095-1130114 | Msa1268160:intron | 45.0% | |
| ! | TTTGGTGTGAAGAGTGAGTG+GGG | - | chr8_3:1130181-1130200 | None:intergenic | 45.0% |
| GAGAAGAGAGAAAATCGCAC+AGG | - | chr8_3:1130222-1130241 | None:intergenic | 45.0% | |
| TCTACTCCTTTCTGTCCCAT+CGG | + | chr8_3:1130272-1130291 | Msa1268160:intron | 45.0% | |
| TTGATCGAAGCCACTCGATA+CGG | - | chr8_3:1130320-1130339 | None:intergenic | 45.0% | |
| !! | TGATCTGGGCTGTTTTATCC+TGG | + | chr8_3:1130409-1130428 | Msa1268160:intron | 45.0% |
| ACGTCTTAAAGAAAGCGACC+TGG | + | chr8_3:1130483-1130502 | Msa1268160:intron | 45.0% | |
| !!! | ACCAAGGGTTTTGCTGTTTC+TGG | + | chr8_3:1130572-1130591 | Msa1268160:intron | 45.0% |
| TCCAGAAACAGCAAAACCCT+TGG | - | chr8_3:1130576-1130595 | None:intergenic | 45.0% | |
| !! | AACGAGGCTTTGGAATGACA+AGG | + | chr8_3:1130728-1130747 | Msa1268160:intron | 45.0% |
| CAAGGCCATGTTTCTTCTTC+TGG | + | chr8_3:1131008-1131027 | Msa1268160:CDS | 45.0% | |
| !!! | GAGTGGGGTGCTTTTTCAAA+TGG | + | chr8_3:1131151-1131170 | Msa1268160:CDS | 45.0% |
| GATAGAGAAATGGATGCTGC+TGG | + | chr8_3:1131193-1131212 | Msa1268160:CDS | 45.0% | |
| GATGCTGCTGGTATAAATCC+TGG | + | chr8_3:1131205-1131224 | Msa1268160:CDS | 45.0% | |
| CGAAAACTTACATGGTGACC+AGG | - | chr8_3:1131226-1131245 | None:intergenic | 45.0% | |
| CGATGGTGCGAAAACTTACA+TGG | - | chr8_3:1131234-1131253 | None:intergenic | 45.0% | |
| GAGACGAGTGCTAGTCAATA+TGG | + | chr8_3:1131388-1131407 | Msa1268160:CDS | 45.0% | |
| GCCATGCAGCAAGATAATTC+TGG | + | chr8_3:1131867-1131886 | Msa1268160:CDS | 45.0% | |
| GCCAGAATTATCTTGCTGCA+TGG | - | chr8_3:1131871-1131890 | None:intergenic | 45.0% | |
| TCTGGCGATTTACAAGCAGT+TGG | + | chr8_3:1131885-1131904 | Msa1268160:CDS | 45.0% | |
| CTGGCGATTTACAAGCAGTT+GGG | + | chr8_3:1131886-1131905 | Msa1268160:CDS | 45.0% | |
| TCCCTCCTCTATGATAAAGC+AGG | + | chr8_3:1131909-1131928 | Msa1268160:CDS | 45.0% | |
| CCCTGCTTTATCATAGAGGA+GGG | - | chr8_3:1131913-1131932 | None:intergenic | 45.0% | |
| CCCTCCTCTATGATAAAGCA+GGG | + | chr8_3:1131910-1131929 | Msa1268160:CDS | 45.0% | |
| CCTCCTCTATGATAAAGCAG+GGG | + | chr8_3:1131911-1131930 | Msa1268160:CDS | 45.0% | |
| GACACTCACTTGTTCCATTC+AGG | + | chr8_3:1132060-1132079 | Msa1268160:intron | 45.0% | |
| TGCGACACAATTGTAAAGCG+AGG | + | chr8_3:1132124-1132143 | Msa1268160:CDS | 45.0% | |
| GACACAATTGTAAAGCGAGG+TGG | + | chr8_3:1132127-1132146 | Msa1268160:CDS | 45.0% | |
| AATCCCTACAATTCCTGCAC+CGG | - | chr8_3:1132160-1132179 | None:intergenic | 45.0% | |
| !! | AGAGGTGTTGTTGCCATTGA+TGG | + | chr8_3:1132225-1132244 | Msa1268160:three_prime_UTR | 45.0% |
| !! | GAGGTGTTGTTGCCATTGAT+GGG | + | chr8_3:1132226-1132245 | Msa1268160:three_prime_UTR | 45.0% |
| !! | AGGTGTTGTTGCCATTGATG+GGG | + | chr8_3:1132227-1132246 | Msa1268160:three_prime_UTR | 45.0% |
| !! | AGGTATTGGAGGTGCTCTAT+TGG | + | chr8_3:1132362-1132381 | Msa1268160:three_prime_UTR | 45.0% |
| !! | AATATTTATTTATATATTGT+TGG | + | chr8_3:1128062-1128081 | Msa1268160:intron | 5.0% |
| !! | ATATATTCTAATTATAAAAA+TGG | - | chr8_3:1128664-1128683 | None:intergenic | 5.0% |
| !! | AAAAAATAAAATAGTATAAA+CGG | - | chr8_3:1131677-1131696 | None:intergenic | 5.0% |
| TATGTCCACACTCTTCCCTC+CGG | + | chr8_3:1127974-1127993 | Msa1268160:CDS | 50.0% | |
| !! | CGGTTCGGTTCGGTTTGATT+CGG | - | chr8_3:1128616-1128635 | None:intergenic | 50.0% |
| !!! | TATGCGGTTCGGTTCGGTTT+TGG | - | chr8_3:1128620-1128639 | None:intergenic | 50.0% |
| !! | AAATAGGGGTGTTCGTGGTC+CGG | - | chr8_3:1129059-1129078 | None:intergenic | 50.0% |
| TTGGGGTGACTCTCCAATGT+GGG | - | chr8_3:1129814-1129833 | None:intergenic | 50.0% | |
| GGAAGTTTCTTGGATCGGGT+CGG | - | chr8_3:1130007-1130026 | None:intergenic | 50.0% | |
| GACCCGATCCAAGAAACTTC+CGG | + | chr8_3:1130006-1130025 | Msa1268160:intron | 50.0% | |
| ! | ACGCGTTTTACGCGTGACTT+GGG | - | chr8_3:1130088-1130107 | None:intergenic | 50.0% |
| ! | AACGCGTTTTACGCGTGACT+TGG | - | chr8_3:1130089-1130108 | None:intergenic | 50.0% |
| TCGAAACCGATGGGACAGAA+AGG | - | chr8_3:1130281-1130300 | None:intergenic | 50.0% | |
| CCGCTCTATTCGAAACCGAT+GGG | - | chr8_3:1130290-1130309 | None:intergenic | 50.0% | |
| !! | CCCATCGGTTTCGAATAGAG+CGG | + | chr8_3:1130287-1130306 | Msa1268160:intron | 50.0% |
| ACCGCTCTATTCGAAACCGA+TGG | - | chr8_3:1130291-1130310 | None:intergenic | 50.0% | |
| !! | GGGCTGTTTTATCCTGGAGA+CGG | + | chr8_3:1130415-1130434 | Msa1268160:intron | 50.0% |
| ! | GCACTACCCTAGTTTGTGCA+AGG | - | chr8_3:1130457-1130476 | None:intergenic | 50.0% |
| GATACTGTCGGAACACTAGC+CGG | + | chr8_3:1130888-1130907 | Msa1268160:CDS | 50.0% | |
| CCCCTGCTTTATCATAGAGG+AGG | - | chr8_3:1131914-1131933 | None:intergenic | 50.0% | |
| TTGCCGGTGCAGGAATTGTA+GGG | + | chr8_3:1132154-1132173 | Msa1268160:CDS | 50.0% | |
| !! | GGTGTTGTTGCCATTGATGG+GGG | + | chr8_3:1132228-1132247 | Msa1268160:three_prime_UTR | 50.0% |
| ATGTCCACACTCTTCCCTCC+GGG | + | chr8_3:1127975-1127994 | Msa1268160:CDS | 55.0% | |
| !! | GTTCGTGGTCCGGTTTGGAT+CGG | - | chr8_3:1129049-1129068 | None:intergenic | 55.0% |
| GTTGGGGTGACTCTCCAATG+TGG | - | chr8_3:1129815-1129834 | None:intergenic | 55.0% | |
| ! | CGCGTTTTACGCGTGACTTG+GGG | - | chr8_3:1130087-1130106 | None:intergenic | 55.0% |
| ! | GGGGCGAGCTCTCCTTTTAT+AGG | - | chr8_3:1130162-1130181 | None:intergenic | 55.0% |
| CGGTTACGTACCGTATCGAG+TGG | + | chr8_3:1130307-1130326 | Msa1268160:intron | 55.0% | |
| ! | GTTTTATCCTGGAGACGGCG+TGG | + | chr8_3:1130420-1130439 | Msa1268160:intron | 55.0% |
| TTACTGGGTGAGTCACGACC+AGG | - | chr8_3:1130504-1130523 | None:intergenic | 55.0% | |
| TGCTGCATGGCGCTTAGATC+CGG | - | chr8_3:1131858-1131877 | None:intergenic | 55.0% | |
| ! | AAAGCGAGGTGGTAGCTTGC+CGG | + | chr8_3:1132138-1132157 | Msa1268160:CDS | 55.0% |
| CTTGCCGGTGCAGGAATTGT+AGG | + | chr8_3:1132153-1132172 | Msa1268160:CDS | 55.0% | |
| CATACCCGGAGGGAAGAGTG+TGG | - | chr8_3:1127982-1128001 | None:intergenic | 60.0% | |
| TAAGGGTGGGGTGACCTCCA+AGG | + | chr8_3:1129850-1129869 | Msa1268160:intron | 60.0% | |
| AAGGGTGGGGTGACCTCCAA+GGG | + | chr8_3:1129851-1129870 | Msa1268160:intron | 60.0% | |
| ! | ACCTCCAAGGGTGTGCCCTT+GGG | + | chr8_3:1129863-1129882 | Msa1268160:intron | 60.0% |
| CTAACAACCACGCCGTCTCC+AGG | - | chr8_3:1130430-1130449 | None:intergenic | 60.0% | |
| CTGCATGGCGCTTAGATCCG+GGG | - | chr8_3:1131856-1131875 | None:intergenic | 60.0% | |
| GCTGCATGGCGCTTAGATCC+GGG | - | chr8_3:1131857-1131876 | None:intergenic | 60.0% | |
| ! | GGGGTGTTCGTGGTCCGGTT+TGG | - | chr8_3:1129054-1129073 | None:intergenic | 65.0% |
| ! | GACCTCCAAGGGTGTGCCCT+TGG | + | chr8_3:1129862-1129881 | Msa1268160:intron | 65.0% |
| ! | CCTCCAAGGGTGTGCCCTTG+GGG | + | chr8_3:1129864-1129883 | Msa1268160:intron | 65.0% |
| ! | GTACCCCAAGGGCACACCCT+TGG | - | chr8_3:1129870-1129889 | None:intergenic | 65.0% |
| ! | AGGTGGTAGCTTGCCGGTGC+AGG | + | chr8_3:1132144-1132163 | Msa1268160:CDS | 65.0% |
| ! | CCCCAAGGGCACACCCTTGG+AGG | - | chr8_3:1129867-1129886 | None:intergenic | 70.0% |
| CAAGCCCAAGCCCGGCTGGT+CGG | - | chr8_3:1129952-1129971 | None:intergenic | 70.0% | |
| GACCAGCCGGGCTTGGGCTT+GGG | + | chr8_3:1129951-1129970 | Msa1268160:intron | 70.0% | |
| CCACGACCCAAGCCCAAGCC+CGG | - | chr8_3:1129960-1129979 | None:intergenic | 70.0% | |
| CGGGCTTGGGCTTGGGTCGT+GGG | + | chr8_3:1129958-1129977 | Msa1268160:intron | 70.0% | |
| GACGACGCCGTCCGACCAGC+CGG | + | chr8_3:1129938-1129957 | Msa1268160:intron | 75.0% | |
| ACGACGCCGTCCGACCAGCC+GGG | + | chr8_3:1129939-1129958 | Msa1268160:intron | 75.0% | |
| ! | CCCAAGCCCGGCTGGTCGGA+CGG | - | chr8_3:1129948-1129967 | None:intergenic | 75.0% |
| CCGTCCGACCAGCCGGGCTT+GGG | + | chr8_3:1129945-1129964 | Msa1268160:intron | 75.0% | |
| CGACCAGCCGGGCTTGGGCT+TGG | + | chr8_3:1129950-1129969 | Msa1268160:intron | 75.0% | |
| GACCCAAGCCCAAGCCCGGC+TGG | - | chr8_3:1129956-1129975 | None:intergenic | 75.0% | |
| CCGGGCTTGGGCTTGGGTCG+TGG | + | chr8_3:1129957-1129976 | Msa1268160:intron | 75.0% | |
| ! | GCCGTCCGACCAGCCGGGCT+TGG | + | chr8_3:1129944-1129963 | Msa1268160:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 1127962 | 1132500 | 1127962 | ID=Msa1268160;Name=Msa1268160 |
| chr8_3 | mRNA | 1127962 | 1132500 | 1127962 | ID=Msa1268160-mRNA-1;Parent=Msa1268160;Name=Msa1268160-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0.14|0.12|1|0.28|0.5|8|326|273 |
| chr8_3 | exon | 1127962 | 1128042 | 1127962 | ID=Msa1268160-mRNA-1:exon:144;Parent=Msa1268160-mRNA-1 |
| chr8_3 | exon | 1129570 | 1129663 | 1129570 | ID=Msa1268160-mRNA-1:exon:145;Parent=Msa1268160-mRNA-1 |
| chr8_3 | exon | 1130705 | 1130712 | 1130705 | ID=Msa1268160-mRNA-1:exon:146;Parent=Msa1268160-mRNA-1 |
| chr8_3 | exon | 1130882 | 1131037 | 1130882 | ID=Msa1268160-mRNA-1:exon:147;Parent=Msa1268160-mRNA-1 |
| chr8_3 | exon | 1131139 | 1131234 | 1131139 | ID=Msa1268160-mRNA-1:exon:148;Parent=Msa1268160-mRNA-1 |
| chr8_3 | exon | 1131344 | 1131422 | 1131344 | ID=Msa1268160-mRNA-1:exon:149;Parent=Msa1268160-mRNA-1 |
| chr8_3 | exon | 1131718 | 1131932 | 1131718 | ID=Msa1268160-mRNA-1:exon:150;Parent=Msa1268160-mRNA-1 |
| chr8_3 | exon | 1132082 | 1132500 | 1132082 | ID=Msa1268160-mRNA-1:exon:151;Parent=Msa1268160-mRNA-1 |
| chr8_3 | CDS | 1127962 | 1128042 | 1127962 | ID=Msa1268160-mRNA-1:cds;Parent=Msa1268160-mRNA-1 |
| chr8_3 | CDS | 1129570 | 1129663 | 1129570 | ID=Msa1268160-mRNA-1:cds;Parent=Msa1268160-mRNA-1 |
| chr8_3 | CDS | 1130705 | 1130712 | 1130705 | ID=Msa1268160-mRNA-1:cds;Parent=Msa1268160-mRNA-1 |
| chr8_3 | CDS | 1130882 | 1131037 | 1130882 | ID=Msa1268160-mRNA-1:cds;Parent=Msa1268160-mRNA-1 |
| chr8_3 | CDS | 1131139 | 1131234 | 1131139 | ID=Msa1268160-mRNA-1:cds;Parent=Msa1268160-mRNA-1 |
| chr8_3 | CDS | 1131344 | 1131422 | 1131344 | ID=Msa1268160-mRNA-1:cds;Parent=Msa1268160-mRNA-1 |
| chr8_3 | CDS | 1131718 | 1131932 | 1131718 | ID=Msa1268160-mRNA-1:cds;Parent=Msa1268160-mRNA-1 |
| chr8_3 | CDS | 1132082 | 1132174 | 1132082 | ID=Msa1268160-mRNA-1:cds;Parent=Msa1268160-mRNA-1 |
| chr8_3 | three_prime_UTR | 1132175 | 1132500 | 1132175 | ID=Msa1268160-mRNA-1:three_prime_utr;Parent=Msa1268160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
