AlfalfaGEDB | Msa1278530

M. sativa cultivar zhongmu-4 / Msa1278530

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1278530	XP_013444782.1	96.997	333	10	0	1	333	1	333	0.0	659

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1278530	sp\|C0SVG5\|RVE5_ARATH	56.129	310	118	8	1	305	1	297	8.25e-108	319

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1278530	A0A072TN18	96.997	333	10	0	1	333	1	333	0.0	659

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TFs/TRs:

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Gene ID	Type	Classification
Msa1278530	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1237380	Msa1278530	0.997068	2.164151e-236	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1278530	MtrunA17_Chr8g0348391	96.997	333	10	0	1	333	1	333	0.0	659
Msa1278530	MtrunA17_Chr1g0181771	53.992	263	95	5	52	308	35	277	1.89e-85	259
Msa1278530	MtrunA17_Chr6g0469431	65.405	185	49	4	1	185	1	170	4.64e-74	228
Msa1278530	MtrunA17_Chr3g0109791	40.884	181	90	3	24	187	17	197	2.28e-26	107
Msa1278530	MtrunA17_Chr6g0481061	54.255	94	35	2	53	138	46	139	1.46e-25	106
Msa1278530	MtrunA17_Chr6g0469441	75.439	57	14	0	242	298	23	79	1.99e-25	97.8
Msa1278530	MtrunA17_Chr5g0433851	44.186	172	70	6	49	201	28	192	2.70e-24	102
Msa1278530	MtrunA17_Chr7g0276421	59.459	74	30	0	41	114	3	76	4.45e-24	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1278530	AT4G01280.1	56.169	308	120	6	1	305	1	296	1.16e-109	322
Msa1278530	AT4G01280.2	56.129	310	118	8	1	305	1	297	8.38e-109	319
Msa1278530	AT1G01520.1	53.355	313	111	9	1	306	1	285	8.99e-103	303
Msa1278530	AT5G52660.2	53.651	315	119	5	14	312	9	312	1.23e-102	305
Msa1278530	AT5G52660.1	53.651	315	118	5	14	312	9	311	2.41e-102	304
Msa1278530	AT1G01520.3	53.420	307	108	9	1	300	1	279	2.91e-99	295
Msa1278530	AT3G09600.1	53.125	288	104	7	28	306	11	276	8.61e-90	271
Msa1278530	AT3G09600.7	53.125	288	104	7	28	306	11	276	8.61e-90	271
Msa1278530	AT1G01520.2	52.098	286	102	9	1	279	1	258	7.39e-87	262
Msa1278530	AT1G01520.4	52.098	286	102	9	1	279	1	258	7.39e-87	262

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Find 128 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTGTGGTGTTGGATT+AGG	0.259526	8_3:-14914552	None:intergenic
AAAGCAGGTGAAGGTTGCAA+TGG	0.602544	8_3:-14917109	None:intergenic
AAAGTGCATCCTCTTGTCAA+AGG	0.615129	8_3:-14920062	None:intergenic
AAATGCCGTTCTGTCTACTT+AGG	0.437086	8_3:+14919560	Msa1278530:CDS
AACAAACCTGTAGTCACTTG+TGG	0.599352	8_3:-14917244	None:intergenic
AACACCCTAAGTAGACAGAA+CGG	0.678268	8_3:-14919565	None:intergenic
AACCCTAATCCAACACCACA+AGG	0.612459	8_3:+14914549	Msa1278530:CDS
AACCTTGTGGTGTTGGATTA+GGG	0.281198	8_3:-14914551	None:intergenic
AACGGTAGATGCTGCCGCGG+CGG	0.630207	8_3:-14914652	None:intergenic
AACTTTGCCTTCTCGCAGTC+AGG	0.399115	8_3:-14919498	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTCTCTCTAGATTTAGTAA+TGG	-	chr8_3:14914715-14914734	None:intergenic	30.0%
TTACTAAATCTAGAGAGAGT+TGG	+	chr8_3:14914715-14914734	Msa1278530:CDS	30.0%
GTTGTTAATTAGGTTCTGTT+TGG	+	chr8_3:14914809-14914828	Msa1278530:intron	30.0%
TTGTGGAAATTGATTATGTC+GGG	+	chr8_3:14914846-14914865	Msa1278530:intron	30.0%
GTTTGGATTTACATTCACTT+AGG	+	chr8_3:14914913-14914932	Msa1278530:intron	30.0%
TAGGATTATTTATTGGGGAA+AGG	+	chr8_3:14914932-14914951	Msa1278530:intron	30.0%
TATTTATTGGGGAAAGGATT+AGG	+	chr8_3:14914938-14914957	Msa1278530:intron	30.0%
ATTTATTGGGGAAAGGATTA+GGG	+	chr8_3:14914939-14914958	Msa1278530:intron	30.0%
AAATAAGTCCCAATTCAAAC+AGG	-	chr8_3:14914966-14914985	None:intergenic	30.0%
AATAACTAAGCAAAAGACAG+GGG	-	chr8_3:14915389-14915408	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	14914421	14920241	14914421	ID=Msa1278530;Name=Msa1278530
chr8_3	mRNA	14914421	14920241	14914421	ID=Msa1278530-mRNA-1;Parent=Msa1278530;Name=Msa1278530-mRNA-1;_AED=0.07;_eAED=0.07;_QI=116\|1\|1\|1\|1\|1\|8\|660\|333
chr8_3	exon	14914421	14914778	14914421	ID=Msa1278530-mRNA-1:exon:5769;Parent=Msa1278530-mRNA-1
chr8_3	exon	14916473	14916530	14916473	ID=Msa1278530-mRNA-1:exon:5770;Parent=Msa1278530-mRNA-1
chr8_3	exon	14916865	14916988	14916865	ID=Msa1278530-mRNA-1:exon:5771;Parent=Msa1278530-mRNA-1
chr8_3	exon	14917080	14917259	14917080	ID=Msa1278530-mRNA-1:exon:5772;Parent=Msa1278530-mRNA-1
chr8_3	exon	14917369	14917488	14917369	ID=Msa1278530-mRNA-1:exon:5773;Parent=Msa1278530-mRNA-1
chr8_3	exon	14918926	14919035	14918926	ID=Msa1278530-mRNA-1:exon:5774;Parent=Msa1278530-mRNA-1
chr8_3	exon	14919185	14919244	14919185	ID=Msa1278530-mRNA-1:exon:5775;Parent=Msa1278530-mRNA-1
chr8_3	exon	14919474	14920241	14919474	ID=Msa1278530-mRNA-1:exon:5776;Parent=Msa1278530-mRNA-1
chr8_3	five_prime_UTR	14914421	14914536	14914421	ID=Msa1278530-mRNA-1:five_prime_utr;Parent=Msa1278530-mRNA-1
chr8_3	CDS	14914537	14914778	14914537	ID=Msa1278530-mRNA-1:cds;Parent=Msa1278530-mRNA-1
chr8_3	CDS	14916473	14916530	14916473	ID=Msa1278530-mRNA-1:cds;Parent=Msa1278530-mRNA-1
chr8_3	CDS	14916865	14916988	14916865	ID=Msa1278530-mRNA-1:cds;Parent=Msa1278530-mRNA-1
chr8_3	CDS	14917080	14917259	14917080	ID=Msa1278530-mRNA-1:cds;Parent=Msa1278530-mRNA-1
chr8_3	CDS	14917369	14917488	14917369	ID=Msa1278530-mRNA-1:cds;Parent=Msa1278530-mRNA-1
chr8_3	CDS	14918926	14919035	14918926	ID=Msa1278530-mRNA-1:cds;Parent=Msa1278530-mRNA-1
chr8_3	CDS	14919185	14919244	14919185	ID=Msa1278530-mRNA-1:cds;Parent=Msa1278530-mRNA-1
chr8_3	CDS	14919474	14919581	14919474	ID=Msa1278530-mRNA-1:cds;Parent=Msa1278530-mRNA-1
chr8_3	three_prime_UTR	14919582	14920241	14919582	ID=Msa1278530-mRNA-1:three_prime_utr;Parent=Msa1278530-mRNA-1

Gene Sequence

>Msa1278530

ATGGTATCTATAAACCCTAATCCAACACCACAAGGTTTCTACTTCTTCGATCCTTCAACTATGGGTCTTCCCGGTGTTAACAATCTTCCTCCTCCACCGCCGCCGCCATCTACTACCGCCGCGGCAGCATCTACCGTTTCTGAGGATCCGAATAAGAAGATCAGGAAACCATATACCATTACTAAATCTAGAGAGAGTTGGACTGATCAGGAACATGATAAGTTTCTAGAAGCTCTTCAATTATTCGATCGTGATTGGAAGAAGATTGAAGCCTTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTCAAAGTTCAGAAGAGTGGAACAAGTGAACATGTCCCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCCCCCAAAAATGCTCCTACTGCATCCCCCCAAGTCATGGGGCCATTGCAACCTTCACCTGCTTTTGTTGACCCAACTTACATTTATAGCACAGATTCATCATCTGTGCTTGGTACACCAGTTACTAATCTGCCTTTATCATCTCTGAATTTTAACGCTCCACCACCAACCAGTTTGCCACAAGTGACTACAGACGACACAGGATGGACTGGATCTGGACAAGCTGTTCCTGTTAATTGTTGCTATAGCAGCAGCAATGAGAAGCAAAGTAGTAAAGGGATTAATCAAGGCTGCGCGGGCAAGCCTGTTAAAGTCATGCCAGATTTTGCACAAGTATACCGCTTCATTGGCAGTGTATTTGATCCAAATTCAACCAATCAGCTACAGAGGCTAAAACAGATGGACCCAATAAATGTTGAAACGGCACTGTTGTTGATGAGAAACCTCTCCATTAATTTAACGAGTCCTGAATTTGAGGATTATAAGAGGCTACTGTCATCATATGATCCTGACTGCGAGAAGGCAAAGTTTGCTAATCCAAGCAGCAAATCCATGACTGTAAAATCTGAAAATGCCGTTCTGTCTACTTAG

Protein sequence

>Msa1278530

MVSINPNPTPQGFYFFDPSTMGLPGVNNLPPPPPPPSTTAAAASTVSEDPNKKIRKPYTITKSRESWTDQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKNAPTASPQVMGPLQPSPAFVDPTYIYSTDSSSVLGTPVTNLPLSSLNFNAPPPTSLPQVTTDDTGWTGSGQAVPVNCCYSSSNEKQSSKGINQGCAGKPVKVMPDFAQVYRFIGSVFDPNSTNQLQRLKQMDPINVETALLLMRNLSINLTSPEFEDYKRLLSSYDPDCEKAKFANPSSKSMTVKSENAVLST*