AlfalfaGEDB | Msa1278570

M. sativa cultivar zhongmu-4 / Msa1278570

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1278570	sp\|Q3EDL4\|Y1154_ARATH	72.485	487	108	8	1	476	1	472	0.0	694

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1278570	A0A072TNP0	98.326	478	7	1	1	478	1	477	0.0	959

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1237460	Msa1278570	0.863270	2.807108e-64	-8.615850e-47
Msa1278570	Msa1317880	0.836112	1.132556e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1278570	MtrunA17_Chr8g0348451	98.326	478	7	1	1	478	1	477	0.0	959
Msa1278570	MtrunA17_Chr7g0248491	72.764	492	110	7	1	472	1	488	0.0	696
Msa1278570	MtrunA17_Chr5g0402071	63.319	458	131	6	1	428	1	451	0.0	551
Msa1278570	MtrunA17_Chr3g0144551	62.319	414	140	5	17	427	17	417	1.27e-179	510
Msa1278570	MtrunA17_Chr5g0443121	54.255	470	170	4	9	435	7	474	1.02e-173	498
Msa1278570	MtrunA17_Chr4g0069251	54.644	463	168	7	6	427	2	463	2.80e-172	494
Msa1278570	MtrunA17_Chr4g0034931	69.697	330	92	2	122	443	118	447	4.22e-171	489
Msa1278570	MtrunA17_Chr3g0096351	55.435	460	162	6	9	427	7	464	1.71e-170	489
Msa1278570	MtrunA17_Chr2g0302631	66.667	324	106	2	121	442	161	484	5.01e-157	455
Msa1278570	MtrunA17_Chr7g0271451	70.569	299	88	0	121	419	172	470	3.23e-156	453

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1278570	AT1G01540.2	72.485	487	108	8	1	476	1	472	0.0	694
Msa1278570	AT4G01330.1	70.103	485	120	5	1	469	3	478	0.0	681
Msa1278570	AT4G01330.2	69.897	485	122	5	1	469	3	479	0.0	678
Msa1278570	AT4G01330.3	74.318	440	97	3	1	424	3	442	0.0	663
Msa1278570	AT1G01540.1	78.082	365	70	5	1	355	1	365	0.0	566
Msa1278570	AT4G02630.1	64.414	444	137	5	5	427	3	446	0.0	549
Msa1278570	AT4G34500.1	61.485	431	148	7	14	433	13	436	1.60e-178	508
Msa1278570	AT3G59110.1	52.778	468	171	6	9	427	7	473	5.26e-167	481
Msa1278570	AT2G42960.3	53.118	465	167	6	9	427	7	466	1.13e-162	469
Msa1278570	AT2G42960.5	53.118	465	167	6	9	427	7	466	1.13e-162	469

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Find 138 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACATAAAACACAACA+AGG	0.686743	8_3:+14961874	None:intergenic
AAAGTTGAGGTAGAAGTAAT+TGG	0.324882	8_3:+14963630	Msa1278570:CDS
AACAAATTACAGCAGAGAAA+AGG	0.410147	8_3:-14965901	None:intergenic
AACCCTAAGGTTTCTGATTT+CGG	0.232754	8_3:+14964168	Msa1278570:CDS
AAGAATCTTGTTAGGTTGCT+CGG	0.488687	8_3:+14963666	Msa1278570:CDS
AAGATTCTTAACAGCAATTT+TGG	0.151813	8_3:-14962658	None:intergenic
AAGTTTCGCATCTTGGGTGG+GGG	0.540016	8_3:+14962523	Msa1278570:CDS
AATCTAGACCAATGGCTGCA+TGG	0.638270	8_3:+14963881	Msa1278570:CDS
ACAAATTACAGCAGAGAAAA+GGG	0.459724	8_3:-14965900	None:intergenic
ACATACTCATTGATCGTCAA+TGG	0.496675	8_3:+14964145	Msa1278570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAAGGTTAAGGTAGGATTT+AGG	-	chr8_3:14961902-14961921	None:intergenic	30.0%
TCCAAAAAAACATCCATCTT+CGG	+	chr8_3:14962198-14962217	Msa1278570:CDS	30.0%
GAAGATAATGTTATTGGTGA+AGG	+	chr8_3:14962594-14962613	Msa1278570:CDS	30.0%
GGTTATGGAATTGTTTATAG+TGG	+	chr8_3:14962618-14962637	Msa1278570:CDS	30.0%
GATTAAGTCATAGACAAAGT+CGG	-	chr8_3:14962861-14962880	None:intergenic	30.0%
TAGATGGAAAAAACGTAGTT+GGG	-	chr8_3:14962925-14962944	None:intergenic	30.0%
GGACAAATATAATGTGTGTT+TGG	+	chr8_3:14962996-14963015	Msa1278570:intron	30.0%
TATCCTTGTCTTGTATTGTT+TGG	+	chr8_3:14963338-14963357	Msa1278570:intron	30.0%
TTTGGAGATGTTATGTAAAG+TGG	+	chr8_3:14963356-14963375	Msa1278570:intron	30.0%
AATTCAGTTGCAAGAAAACA+AGG	-	chr8_3:14963422-14963441	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	14961889	14965943	14961889	ID=Msa1278570;Name=Msa1278570
chr8_3	mRNA	14961889	14965943	14961889	ID=Msa1278570-mRNA-1;Parent=Msa1278570;Name=Msa1278570-mRNA-1;_AED=0.15;_eAED=0.15;_QI=270\|1\|1\|1\|0.85\|0.75\|8\|275\|478
chr8_3	exon	14961889	14962691	14961889	ID=Msa1278570-mRNA-1:exon:5777;Parent=Msa1278570-mRNA-1
chr8_3	exon	14963608	14963712	14963608	ID=Msa1278570-mRNA-1:exon:5778;Parent=Msa1278570-mRNA-1
chr8_3	exon	14963850	14963972	14963850	ID=Msa1278570-mRNA-1:exon:5779;Parent=Msa1278570-mRNA-1
chr8_3	exon	14964083	14964253	14964083	ID=Msa1278570-mRNA-1:exon:5780;Parent=Msa1278570-mRNA-1
chr8_3	exon	14964385	14964514	14964385	ID=Msa1278570-mRNA-1:exon:5781;Parent=Msa1278570-mRNA-1
chr8_3	exon	14964604	14964813	14964604	ID=Msa1278570-mRNA-1:exon:5782;Parent=Msa1278570-mRNA-1
chr8_3	exon	14965484	14965766	14965484	ID=Msa1278570-mRNA-1:exon:5783;Parent=Msa1278570-mRNA-1
chr8_3	exon	14965787	14965943	14965787	ID=Msa1278570-mRNA-1:exon:5784;Parent=Msa1278570-mRNA-1
chr8_3	five_prime_UTR	14961889	14962158	14961889	ID=Msa1278570-mRNA-1:five_prime_utr;Parent=Msa1278570-mRNA-1
chr8_3	CDS	14962159	14962691	14962159	ID=Msa1278570-mRNA-1:cds;Parent=Msa1278570-mRNA-1
chr8_3	CDS	14963608	14963712	14963608	ID=Msa1278570-mRNA-1:cds;Parent=Msa1278570-mRNA-1
chr8_3	CDS	14963850	14963972	14963850	ID=Msa1278570-mRNA-1:cds;Parent=Msa1278570-mRNA-1
chr8_3	CDS	14964083	14964253	14964083	ID=Msa1278570-mRNA-1:cds;Parent=Msa1278570-mRNA-1
chr8_3	CDS	14964385	14964514	14964385	ID=Msa1278570-mRNA-1:cds;Parent=Msa1278570-mRNA-1
chr8_3	CDS	14964604	14964813	14964604	ID=Msa1278570-mRNA-1:cds;Parent=Msa1278570-mRNA-1
chr8_3	CDS	14965484	14965648	14965484	ID=Msa1278570-mRNA-1:cds;Parent=Msa1278570-mRNA-1
chr8_3	three_prime_UTR	14965649	14965766	14965649	ID=Msa1278570-mRNA-1:three_prime_utr;Parent=Msa1278570-mRNA-1
chr8_3	three_prime_UTR	14965787	14965943	14965787	ID=Msa1278570-mRNA-1:three_prime_utr;Parent=Msa1278570-mRNA-1

Gene Sequence

>Msa1278570

ATGTCAGTATACGATGCAGCATTCATCGACACACAACTCTCCAAAAAAACATCCATCTTCGGTCTCCGTCTCTGGGTTGTCATCGGAATCCTCGTCGGTTCTCTCATCGTCATAACTCTCTTCCTTCTCTCTCTATGTCTCACCTCCCACCGCCGCCGCAAAAACCACCATAAACCCACCAAGCTCACCCACTTCACTCCCGTAGTCTCCAAGGAAATCCAAGAAATCATCCACGCGCCACCTTTACCAGAGATCCACGTCGACACAGTGAAGCTTGAGCTCCGACGTGTTTCCACCAGTGGAGAGAGTAAGGGAGGAGGTGGTGTGTGTGAAACTGTGTCTTCTATTGGAAGTGTTGGACCCGAAGTTTCGCATCTTGGGTGGGGGAGATGGTATACACTTAGAGAACTTGAAGCTGCTACTAATGGTTTGTGTGAAGATAATGTTATTGGTGAAGGTGGTTATGGAATTGTTTATAGTGGTGTTCTTGTTGATGGTACCAAAATTGCTGTTAAGAATCTTTTGAATAACAAAGGACAAGCTGAGAGAGAATTTAAAGTTGAGGTAGAAGTAATTGGTCGTGTTCGGCACAAGAATCTTGTTAGGTTGCTCGGATATTGTGTTGAAGGCGCATACAGGATGCTTGTGTATGAATTTGTTGATAATGGCAATCTAGACCAATGGCTGCATGGAGATGTTGGACCAGTAAGCCCTATGACGTGGGATATCCGGATGAACATTTTACTGGGCACAGCAAAAGGATTGGCTTATCTTCATGAGGGTCTTGAACCAAAAGTTGTCCACCGAGATGTGAAATCAAGTAACATACTCATTGATCGTCAATGGAACCCTAAGGTTTCTGATTTCGGTCTCGCTAAGCTTCTGCATTCTGACCACAGCTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCCGAGTATGCCTGCACTGGAATGCTGACCGAGAGGAGTGACGTGTATAGCTTTGGGATACTTATCATGGAACTAATCACTGGAAGAAGTCCTGTTGATTATAGCAGACCGCAGGGAGAGGTTAATTTAGTTGAGTGGTTAAAAAATATGGTTGGGAGTCGAAGAGCCGAGGAAGTAGTTGATCCTAAAATTTCAGAGAAGCCGTCTTCAAAGGCTCTTAAACGTGCGCTGTTGGTTGCTCTTCGATGTGTTGATCCTGATTCCATAAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAGGCTGACGACCTTTTATTTCGTGAGGATCGAAGGATCGCCGGAGAATCTTCTCATTCCAATCGCGATTATCAACGAGAGCATAAGGGTTCGAGTTTAGGTAAAAATCGGATAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAGTAGTAGTAGTAGAAGTCACCATCAGCCAACTAAGTTGAGATGA

Protein sequence

>Msa1278570

MSVYDAAFIDTQLSKKTSIFGLRLWVVIGILVGSLIVITLFLLSLCLTSHRRRKNHHKPTKLTHFTPVVSKEIQEIIHAPPLPEIHVDTVKLELRRVSTSGESKGGGGVCETVSSIGSVGPEVSHLGWGRWYTLRELEAATNGLCEDNVIGEGGYGIVYSGVLVDGTKIAVKNLLNNKGQAEREFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYEFVDNGNLDQWLHGDVGPVSPMTWDIRMNILLGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNPKVSDFGLAKLLHSDHSYVTTRVMGTFGYVAPEYACTGMLTERSDVYSFGILIMELITGRSPVDYSRPQGEVNLVEWLKNMVGSRRAEEVVDPKISEKPSSKALKRALLVALRCVDPDSIKRPKMGHVIHMLEADDLLFREDRRIAGESSHSNRDYQREHKGSSLGKNRIGGEITDQSEDDSSSSRSHHQPTKLR*