AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1278760


Find 552 sgRNAs with CRISPR-Local

Find 931 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr8_3 gene 15297720 15310071 15297720 ID=Msa1278760;Name=Msa1278760
chr8_3 mRNA 15297720 15310071 15297720 ID=Msa1278760-mRNA-1;Parent=Msa1278760;Name=Msa1278760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=427|0.91|1|1|1|1|13|311|2176
chr8_3 exon 15297720 15298657 15297720 ID=Msa1278760-mRNA-1:exon:5917;Parent=Msa1278760-mRNA-1
chr8_3 exon 15299048 15299299 15299048 ID=Msa1278760-mRNA-1:exon:5916;Parent=Msa1278760-mRNA-1
chr8_3 exon 15299622 15300137 15299622 ID=Msa1278760-mRNA-1:exon:5915;Parent=Msa1278760-mRNA-1
chr8_3 exon 15300227 15301771 15300227 ID=Msa1278760-mRNA-1:exon:5914;Parent=Msa1278760-mRNA-1
chr8_3 exon 15301854 15302096 15301854 ID=Msa1278760-mRNA-1:exon:5913;Parent=Msa1278760-mRNA-1
chr8_3 exon 15303749 15303949 15303749 ID=Msa1278760-mRNA-1:exon:5912;Parent=Msa1278760-mRNA-1
chr8_3 exon 15304194 15304277 15304194 ID=Msa1278760-mRNA-1:exon:5911;Parent=Msa1278760-mRNA-1
chr8_3 exon 15304360 15304452 15304360 ID=Msa1278760-mRNA-1:exon:5910;Parent=Msa1278760-mRNA-1
chr8_3 exon 15304816 15304903 15304816 ID=Msa1278760-mRNA-1:exon:5909;Parent=Msa1278760-mRNA-1
chr8_3 exon 15305087 15305199 15305087 ID=Msa1278760-mRNA-1:exon:5908;Parent=Msa1278760-mRNA-1
chr8_3 exon 15305377 15306711 15305377 ID=Msa1278760-mRNA-1:exon:5907;Parent=Msa1278760-mRNA-1
chr8_3 exon 15306812 15308065 15306812 ID=Msa1278760-mRNA-1:exon:5906;Parent=Msa1278760-mRNA-1
chr8_3 exon 15309465 15310071 15309465 ID=Msa1278760-mRNA-1:exon:5905;Parent=Msa1278760-mRNA-1
chr8_3 five_prime_UTR 15309645 15310071 15309645 ID=Msa1278760-mRNA-1:five_prime_utr;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15309465 15309644 15309465 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15306812 15308065 15306812 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15305377 15306711 15305377 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15305087 15305199 15305087 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15304816 15304903 15304816 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15304360 15304452 15304360 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15304194 15304277 15304194 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15303749 15303949 15303749 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15301854 15302096 15301854 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15300227 15301771 15300227 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15299622 15300137 15299622 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15299048 15299299 15299048 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 CDS 15298031 15298657 15298031 ID=Msa1278760-mRNA-1:cds;Parent=Msa1278760-mRNA-1
chr8_3 three_prime_UTR 15297720 15298030 15297720 ID=Msa1278760-mRNA-1:three_prime_utr;Parent=Msa1278760-mRNA-1
Gene Sequence

>Msa1278760

ATGCAGTCTGGTGGTGGTGGACCTGGCCGGACGGCGGGGCGGGTGTCGACACCGTCGGCAGCTGCTTCACCGTCTTCGTCTTCTTCGGCTTCACAGTTAGGGTTTGAATCTTTGCACCAACAACAGCAACACCAACAACAACAGCAGCAGCAACAGCAGCAGCAGATAGGTTCTAGGCAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAAGCGAATGAAGCATTTTTAGCTTATCAAGCAGGGCGTCAAGGTGTATTTGGAAGTAACAATTTCCAACAACCTAATGCTATGCAGCTGCCTCAGCAGTCTGGAAAATTCGTTAATTTAGCTCAACATGGTTCAAACCAAGATGGTCAGCTCAGAGGTCAAGGTAGCGAGCAGCAGCAAATGGTAAACCCTGTCCAACAAGCATACCTTCAATATGCTTTTCAGGCTGCGCAACAAAAGCAGCCTGCTTTGGGAATTCATTCGCAACAACAAGCTAAGATGGGAATGTTAAACCCTGCATCTGTAAAAGATCAGGAAATGCGTATGGGAAATCTGAAAATGCAAGAAGCTATGTCAATGCAGGCAGTCAATCAAGCTCAAGGATCATCCTCTAGGAATTCATCCGAACACAATGCTCGTGGAGAAAAGCAGATGGAGCAAGGGCAGCAGATAAGACCTATTCAAGCACCAGAAGCACAACAGGGCAACGTTCAAAATGTTATGAACACCCAGATTGCAGTAGCTCATCAATTGCAGATGATGCAAGCATGGGCACGCGAAAATAATATTGATTTATCACATCCTACGAATGCAAATTTAATGGCAAAGCTCATTCCAATGATGCAGTCGAGGATGGTCTTACCACCAAAGGCAGGCGAGAGCAACGTTGGTGCACAGTCGTCACCTGTCCCTGTTTCAAAGCAGCAGGTTAATTCTCCAGCTGTTGCAAGTGAGAGCTCAGCACTTGCTAATTCATCAAGCGATGTGTCTGGGCAGTCAGGTTCTTCGAAAGCTAGGCATACTGTTCCACCCAGCCATCTTGGCCAAACAACAAATGCTGGTCACTCCAGTGACATGGCCATGCAGCAATTCAATATTCATGGTAGAGAGTCTCAAGCTCCTCCGAGGCAACAAGTAAAAGCTGGAAATGGAATGCCTTCTATGCATTCTCAGCAATCTTCTGCAGCCATGAACTTAGGTGCAGCAGACCATTCTTTAAATGCAAAAGGTTTATCTTCTGGTGCAGAACCTCCTCAAATGCAGTATAACAGGCAGTTAAACCAATCTACTACTCAGGCCGGAGGTCCAACAAAAGAAGGGGGTTCGAGAAATAATGCTAAATCTCAAGGGCCACCTGCTCAGATGCCTGAGCGACAAAGTGCATTTACCAAACAACAGCTACATGTTCTTAAAGCACAGATACTAGCATTCAGGAGGATAAAGAAAGGAGAAGGAATGCTGCCTCCAGAACTTCTTCAAGCTATCACTCCACCGCCTCTTGAGGTGCAGGCAGAACAACCAAACCAGCCTACGGGAGGACAAAATCAAGTCAGATCTGCTGGACATATTGCTGCAGAACAACCACGGCATGTTGAGGCCAATGCCAAAGAATCACAATCTATTCCTGCCGTTAATGGACACAGTTCTGTAAAGCAGGAATCCTTTTCAAGAGAGGAGAAATCGGCTCCACCACCAGTTCATATCCAAGCTGTTATGCCATCTATGTCAAAGGAATCTGCTTCAACATCATCTGCGGGAAAGGAAGAGCAGAAAACAATTGGATCCTCTTTTAAGCCAAAGCAGGACAGTGAACATGGAAATAACAGTACTCCTGTTAGAAATGAGTCGGCATTAGATAGGGGAAAGGCTATTGCACCACAGGCCTCTGTATCTGACACAATGCAAATTACAAAACCTGCACAAGCAACCACTGTTTCTCAGCCGAAGGATGTGGGACCAGCCAGAAAATATCACGGACCCCTGTTTGATTTTCCTTTCTTCACTAGGAAACATGACTCTTTTGGGTCGTCAATGATGGTAAACAACAACAACAATTTATCACTGGCATATGATGTCAAAGATCTTCTTTCTGAGGAAGGCGCTGAAGTACTTAACAAAAAGCGGACAGAAAATTTAAAGAAGATTGAAGGTTTACTGGCTGTAAATTTGGAGAGGAAACGAATTAGGCCTGATCTTGTGTTGAGACTTCAAATTGAAGAGAAAAAGCTCCGCCTTTTAGATGTTCAGGCACGTTTGAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCTGATAGGCCATATCGTAAGTTTGTTAGGCTGTGTGAACGTCAGCGTATGGAACTTGTAAGACAAGTGCAGGCGTCTCAGAAAGCTGCAAGGGAGAAGCAACTCAAATCTATATTTCTATGGCGTAAGAAACTTCTTGAGGCACACTGGGCAATTCGTGATGCCCGTACTGCTCGCAACAGGGGGGTGGGTAAATATCATGAGAGGATGTTGAGGGAATTCTCAAAACATAAAGATGACGACAGAAGCAAAAGGTTAGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATTCCGGGTGATGCTGCAGAGAGATATACTGTTCTTTCATCTTTCTTAAGCCAGACTGAAGAGTATCTACATAAATTAGGAAGCAAGATAACAGCTGCCAAAAATCAACAGGAAGTAGAGGAGGCAGCAAAAGCAGCTGCGGATGCTGCACGGTTGCAGGGTCTTTCTGAAGAAGAAGTCAGGGCTGCTGCTGCTTGTGCCGGAGAGGAAGTGATGATTAGGAATCGTTTTCTGGAGATGAATGCTCCTAGAGACAGTTCATCCGTCAACAAGTATTACAACCTCGCACATGCAGTGAATGAAATGGTCATAAGACAACCATCCCTATTACGAGCTGGAACATTGAGAGACTATCAGCTTGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGTCCACATCTCATAATAGTCCCAAATGCTGTCATGGTTAACTGGAAGAGTGAGTTATATAAGTGGTTGCCATCTGTGTCGTGCATCTTTTATGCTGGAGGGAAGGATTATCGAACAAAATTATTTCATCAAGTTTCTGCTCTGAAATTTAATGTCTTGGTGACTACTTATGAGTTCATCATGTATGACCGGTCAAAGCTTTCAAAAATTGATTGGAAGTATATCGTGATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTTTAGCTCGTGATCTTGATAGGTATCGTTGTCAAAGACGTCTACTTTTGACAGGAACGCCGTTGCAGAATGATTTGAAGGAACTCTGGTCGCTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAACAAGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTGCTGCTCAAAATGCAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTCATCACAATCCATCGACTTCATCAGATTCTTGAACCTTTCATGCTCAGGCGACGAGTTGAAGATGTTGAAGGCTCACTACCACCAAAGGACTCGATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTATGACTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCCGAGGATGAGGAACGTAAGGTTCAGAGGAATCCTAACTACCAGCTGAAGCAATATAAAACTTTAAACAACCGATGCATGGAGCTGAGGAAAACTTGCAATCATCCGTTGCTTAATTACCCATTCTTCAGCGACTTATCTAAAGAATTCATTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTGATAAAACTTCAAAGGACCGGACATCGTGTTCTACTATTCAGTACCATGACAAAACTTCTTGATATATTGGAAGAATACCTGCAGTGGCGAAGACTTGTGTACAGAAGAATTGACGGGACAACTAGTTTAGAAGACCGTGAATCAGCTATAAACGACTTCAATGGCCCTGATTCAGACTGTTTTATCTTCCTACTTAGCATTCGAGCTGCTGGAAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTATGACCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTTGCCAGAGCTCATCGCATTGGTCAGAAAAGACCAGTCAAGGTTATCTACATGGAAGCAGTTGTCGACAAAATCCCTAGTCATCAGAAGGAAGATGAAATGAGAGGTAGAGGCACTGTCGATCTGGAGGATGAACTTGCCGGCAAGGATCGCTACATAGGATCCATTGAGGGCCTCATAAGGAACAACATTCAGCAATATAAGATAGATATGGCTGATGAGGTGATTAATGCCGGACGTTTCGATCAAAGAACAACACACGAAGAAAGGCGTTTGACTTTGGAGACATTGTTACATGATGATGAGAGGTATCAAGAAACTGTCCATGATGTTCCATCATTGCAGGAGGTAAATCGTATGATTGCTAGGAGTGAAGAGGAAGTTGAACTCTTCGATCAAATGGATGATGAACTGGATTGGATTGAAGAGATGACATGTTATGATCATGTGCCTAAATGGATTCGTGCCAATACAAAAGAAGTTAATGCTGCTATAGCTGCTTTATCAAAAAGACCGTTAAAGAAAACTCTATTGGGTGGTAGTATTGCCGTGAATCCAAGTGAACTTGGTTCAGAAAGGAAAAGAGGCCGACCCAAAAAGCATACAAGTTATAAAGAGCTGGATGATGAAGATTTGGAATACTCTGAAGCAAGCTCTGAAGAAAGAAATGGATCTGCAAATGAAGAAGGGGAAGCAGGAGATTTCGAAGATGATGGGTATAGTGGAGCTGATGGAGCTCAGCCCATTGCTAAAGATCAACTGGAAAATAGTATGCTTTGTGACGGTGGATATGAATTTCCTCCATCTTTAGATATTGTCAGAAATAATCAAGTGGTTCAAGACGCTGGTTCTTCTGGATCTTCGGCCGACTGTCAAAAATTGACACAGATAGTATCACCATCAATTTCCGCTCAGAAATTTGGTTCCCTGTCAGCATTAGATGCCCGGCCAGGTTCCATTTCAAAAAGAATGACAGATGAGTTAGAGGAAGGAGAAATAGCAGTATCCTTTGATTCACACATGGAGCATCAACAGTCTGGAAGTTGGATTCATGATCGCGATGAAGGTGAGGATGAGCAAGTTTTGCAGAAACCAAGGATTAAACGCAAACGTAGTATTCGTGTTCGACCCCGTCATGCCACTGAAAAACCTGAGGATAAGTCTGGTAGTGAAACGATTCCTCGTTTGTCAGTTCAAGCAGACCGTAAATATCAAGCACAGCTGAGGACTGACCTAGAATCGAAATCACATGTAGAGTCCAATGCCAGTAGGAATGAGCAAAATTCTTCAATAAAAAATAAGCGTACCTTACCTTCAAGGAGGGTTGCTAATACATCCAAATTACATAGCTCACCAAAGCCTACTCGTTTGTCTGCTCCTTCAGAGGATGGTGGTGAACATTCTAGGGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGATCTTCTGCTCATGGCTCTAGGATGACAGAAATCATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGGATAGACAAGGAAGGCCATCAAATTGTACCTCTGTTAACAGATTTGTGGAAGAGGATTGAGAATTCTGGGTACAGTGGTGGATCTGGGAATAATCTGTTGGATTTACGAAAGATTGATCAACGAATTGATAAATTGGAGTATACTGGAGCAACAGATCTTGTATTTGACGTCCAGTTCATGTTAAAGAGCGCGATGCAATATTATGGTTTTTCCCTTGAGGTAAGAACTGAAGCAAGGAAGGTTCATAATCTCTTTTTCGATATATTGAAAATTGCATTTCCTGATACTGACTTCCAAGACGCAAAAAGTGCACTCTCTTTCACTGGTCCAATCTCTGCCCCCACCATGGTATCGTCTCCAAGGCAAGTGGCTGTTGGCCAAGGCAAGAGGCACAGGCTGGTAAATGAAGTGGAACCGGATTCACACCCTTCACAGAGGCAGCTACAGCGCGGATCAGCTTCTAGCGGTGAAAACAGCAGGATTAGAGTCCGTGTCCCACCAAAGGAATCAAGATCCGGATATGGAAGCGGTAGCAGCATTCGAGAGCAACCTCAGCAGCAGGATGATTCTCCTCCACTACTCACTCATCCAGGCGAACTTGTTGTATGCAAGAAAAGAAGAAATGAGAGGGAGAAATCATTGGTGAAGTCTCGGACTGGTCCTGTTTCACCATCTATGAGAAGTCCTGGGGCAGGTTCAGTCCCTAAGGATGTTAGATTAACTCAACAGACTCAAGGGTGGACTGGCCAACCATCTTCTCAACAACCAAATGGGTCAGTTGGGTGGGCCAATCCTGTAAAGAGGCTAAGAACAGATTCTGGTAAGAGGAGACCAAGTCATATGTAA

Protein sequence

>Msa1278760

MQSGGGGPGRTAGRVSTPSAAASPSSSSSASQLGFESLHQQQQHQQQQQQQQQQQIGSRQSFQQQLLRKPEANEAFLAYQAGRQGVFGSNNFQQPNAMQLPQQSGKFVNLAQHGSNQDGQLRGQGSEQQQMVNPVQQAYLQYAFQAAQQKQPALGIHSQQQAKMGMLNPASVKDQEMRMGNLKMQEAMSMQAVNQAQGSSSRNSSEHNARGEKQMEQGQQIRPIQAPEAQQGNVQNVMNTQIAVAHQLQMMQAWARENNIDLSHPTNANLMAKLIPMMQSRMVLPPKAGESNVGAQSSPVPVSKQQVNSPAVASESSALANSSSDVSGQSGSSKARHTVPPSHLGQTTNAGHSSDMAMQQFNIHGRESQAPPRQQVKAGNGMPSMHSQQSSAAMNLGAADHSLNAKGLSSGAEPPQMQYNRQLNQSTTQAGGPTKEGGSRNNAKSQGPPAQMPERQSAFTKQQLHVLKAQILAFRRIKKGEGMLPPELLQAITPPPLEVQAEQPNQPTGGQNQVRSAGHIAAEQPRHVEANAKESQSIPAVNGHSSVKQESFSREEKSAPPPVHIQAVMPSMSKESASTSSAGKEEQKTIGSSFKPKQDSEHGNNSTPVRNESALDRGKAIAPQASVSDTMQITKPAQATTVSQPKDVGPARKYHGPLFDFPFFTRKHDSFGSSMMVNNNNNLSLAYDVKDLLSEEGAEVLNKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDVQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELVRQVQASQKAAREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVGKYHERMLREFSKHKDDDRSKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYTVLSSFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAADAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVNEMVIRQPSLLRAGTLRDYQLVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVSCIFYAGGKDYRTKLFHQVSALKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGAAQNAEDDWLETEKKVITIHRLHQILEPFMLRRRVEDVEGSLPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKVQRNPNYQLKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEDEMRGRGTVDLEDELAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDDERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIEEMTCYDHVPKWIRANTKEVNAAIAALSKRPLKKTLLGGSIAVNPSELGSERKRGRPKKHTSYKELDDEDLEYSEASSEERNGSANEEGEAGDFEDDGYSGADGAQPIAKDQLENSMLCDGGYEFPPSLDIVRNNQVVQDAGSSGSSADCQKLTQIVSPSISAQKFGSLSALDARPGSISKRMTDELEEGEIAVSFDSHMEHQQSGSWIHDRDEGEDEQVLQKPRIKRKRSIRVRPRHATEKPEDKSGSETIPRLSVQADRKYQAQLRTDLESKSHVESNASRNEQNSSIKNKRTLPSRRVANTSKLHSSPKPTRLSAPSEDGGEHSRESWEGKPINSSGSSAHGSRMTEIIQRRCKNVISKLQRRIDKEGHQIVPLLTDLWKRIENSGYSGGSGNNLLDLRKIDQRIDKLEYTGATDLVFDVQFMLKSAMQYYGFSLEVRTEARKVHNLFFDILKIAFPDTDFQDAKSALSFTGPISAPTMVSSPRQVAVGQGKRHRLVNEVEPDSHPSQRQLQRGSASSGENSRIRVRVPPKESRSGYGSGSSIREQPQQQDDSPPLLTHPGELVVCKKRRNEREKSLVKSRTGPVSPSMRSPGAGSVPKDVRLTQQTQGWTGQPSSQQPNGSVGWANPVKRLRTDSGKRRPSHM*