Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279290 | XP_013446247.1 | 86.895 | 351 | 24 | 4 | 1 | 331 | 1 | 349 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279290 | sp|Q94AV5|WIP3_ARATH | 26.619 | 278 | 127 | 10 | 60 | 331 | 253 | 459 | 4.56e-14 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279290 | A0A072TRX7 | 86.895 | 351 | 24 | 4 | 1 | 331 | 1 | 349 | 0.0 | 570 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1233500 | Msa1279290 | 0.803424 | 3.509597e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279290 | MtrunA17_Chr8g0369251 | 86.895 | 351 | 24 | 4 | 1 | 331 | 1 | 349 | 0.0 | 570 |
| Msa1279290 | MtrunA17_Chr3g0079781 | 42.424 | 297 | 141 | 9 | 61 | 331 | 282 | 574 | 3.10e-55 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279290 | AT3G13360.1 | 26.619 | 278 | 127 | 10 | 60 | 331 | 253 | 459 | 4.64e-15 | 76.3 |
| Msa1279290 | AT3G13360.2 | 26.619 | 278 | 127 | 10 | 60 | 331 | 312 | 518 | 6.91e-15 | 75.9 |
| Msa1279290 | AT5G56210.1 | 32.044 | 181 | 108 | 5 | 91 | 267 | 272 | 441 | 3.96e-13 | 70.5 |
Find 59 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGCCACTTCACGCTTATT+TGG | 0.211575 | 8_3:+16172321 | None:intergenic |
| TGCTGTTAATCTTGGTCCTT+TGG | 0.274335 | 8_3:-16172206 | Msa1279290:CDS |
| GGGCACAAACTCCCTGGAAT+TGG | 0.279524 | 8_3:+16172161 | None:intergenic |
| CTGTTGACGGTTGCTGTGTT+TGG | 0.313045 | 8_3:+16174408 | None:intergenic |
| AGCAGCTTCACTTCGACATT+TGG | 0.330876 | 8_3:+16172740 | None:intergenic |
| AACAAAATTCATCAAGTTCC+AGG | 0.338630 | 8_3:-16172656 | Msa1279290:CDS |
| TAGATTCTTCCTTAGTATAA+AGG | 0.356791 | 8_3:+16172520 | None:intergenic |
| ACAGTTCATGCTGTTAATCT+TGG | 0.358063 | 8_3:-16172214 | Msa1279290:CDS |
| GAAGAATCTACTAGCACAAT+AGG | 0.375406 | 8_3:-16172507 | Msa1279290:CDS |
| CAAATTCAGTGCCCAATTCC+AGG | 0.380431 | 8_3:-16172173 | Msa1279290:CDS |
| TCAAAACAAGGTGGTGGTTC+TGG | 0.388758 | 8_3:-16174319 | Msa1279290:CDS |
| TCTCGGTGGCGTTCTGTTGA+CGG | 0.389807 | 8_3:+16174395 | None:intergenic |
| TTCCATGATTCATGCTCATC+TGG | 0.407815 | 8_3:-16172693 | Msa1279290:CDS |
| TCATAACCTTAAGCTTTCTC+AGG | 0.425499 | 8_3:-16174134 | Msa1279290:CDS |
| GGCACAAACTCCCTGGAATT+GGG | 0.438572 | 8_3:+16172162 | None:intergenic |
| TTATGAATAGACTTCAATAA+AGG | 0.443316 | 8_3:+16174151 | None:intergenic |
| AAAGATGATGAAAAGCTTGA+AGG | 0.443945 | 8_3:-16172400 | Msa1279290:CDS |
| TGAATACGACCTTTATACTA+AGG | 0.448068 | 8_3:-16172529 | Msa1279290:CDS |
| GTGCATCCTGAGAAAGCTTA+AGG | 0.448378 | 8_3:+16174128 | None:intergenic |
| GACGACGTTGCTTCCGTCGC+CGG | 0.455707 | 8_3:-16174370 | Msa1279290:CDS |
| CCAAATAAGCGTGAAGTGGC+AGG | 0.458863 | 8_3:-16172321 | Msa1279290:CDS |
| GGAAGCAACGTCGTCATTCT+CGG | 0.469267 | 8_3:+16174378 | None:intergenic |
| TGAAAAGCGAGCTTGAACAA+AGG | 0.493947 | 8_3:-16172572 | Msa1279290:CDS |
| GAAAAGCGAGCTTGAACAAA+GGG | 0.497740 | 8_3:-16172571 | Msa1279290:CDS |
| AGCTTGAACAAAGGGATGGC+AGG | 0.504319 | 8_3:-16172563 | Msa1279290:CDS |
| AGCTGAGGACTCGCCGGCGA+CGG | 0.505810 | 8_3:+16174357 | None:intergenic |
| GAGAAACAAGAAACAATGTC+TGG | 0.509295 | 8_3:-16172360 | Msa1279290:CDS |
| GGCCAGATGAGCATGAATCA+TGG | 0.524029 | 8_3:+16172691 | None:intergenic |
| GCTTGCTATCTGAAGCTCCC+TGG | 0.527670 | 8_3:+16172638 | None:intergenic |
| TTACGTGGGCACAAACTCCC+TGG | 0.530636 | 8_3:+16172155 | None:intergenic |
| AAATGTCGAAGTGAAGCTGC+TGG | 0.535087 | 8_3:-16172738 | Msa1279290:CDS |
| GTGGAGTCAGAGGTAATGCT+AGG | 0.535681 | 8_3:-16174276 | Msa1279290:CDS |
| AGCGAAGATTCTGTAGGGTG+TGG | 0.536779 | 8_3:-16174295 | Msa1279290:CDS |
| CACAACTTTGCAGATTTACG+TGG | 0.546008 | 8_3:+16172140 | None:intergenic |
| ACTTCCTCACATGATGATGA+TGG | 0.550541 | 8_3:-16172768 | Msa1279290:CDS |
| TCTGGTAGCGAAGATTCTGT+AGG | 0.551144 | 8_3:-16174301 | Msa1279290:CDS |
| CTGGTAGCGAAGATTCTGTA+GGG | 0.570072 | 8_3:-16174300 | Msa1279290:CDS |
| GATGGTAAGGTATTTGACCT+CGG | 0.578757 | 8_3:+16172425 | None:intergenic |
| AAATTCAGTGCCCAATTCCA+GGG | 0.587043 | 8_3:-16172172 | Msa1279290:CDS |
| TCTGTAGGGTGTGGAGTCAG+AGG | 0.588326 | 8_3:-16174286 | Msa1279290:CDS |
| ACAAAATTCATCAAGTTCCA+GGG | 0.590941 | 8_3:-16172655 | Msa1279290:CDS |
| TCTCAGGATGCACTTCAACA+AGG | 0.591069 | 8_3:-16174118 | Msa1279290:intron |
| GTTGCTGTGTTTGGATTCAG+CGG | 0.591940 | 8_3:+16174417 | None:intergenic |
| AAATCCAAATAAGCGTGAAG+TGG | 0.597829 | 8_3:-16172325 | Msa1279290:CDS |
| AATTCTAGATCAACAGCACT+TGG | 0.612332 | 8_3:+16172714 | None:intergenic |
| TCTGCAAAAGGTTGAAGCCG+AGG | 0.625879 | 8_3:-16172442 | Msa1279290:CDS |
| TCTTCTAGCTGAGGACTCGC+CGG | 0.631947 | 8_3:+16174351 | None:intergenic |
| ACAACTTTGCAGATTTACGT+GGG | 0.634728 | 8_3:+16172141 | None:intergenic |
| TGGAGTCAGAGGTAATGCTA+GGG | 0.635936 | 8_3:-16174275 | Msa1279290:CDS |
| AGCGAGCTTGAACAAAGGGA+TGG | 0.641835 | 8_3:-16172567 | Msa1279290:CDS |
| GCTGTGTCAAAACAAGGTGG+TGG | 0.649995 | 8_3:-16174325 | Msa1279290:CDS |
| AGAGACGCTGTGTCAAAACA+AGG | 0.652926 | 8_3:-16174331 | Msa1279290:CDS |
| TGATCCATCATCATCATGTG+AGG | 0.663565 | 8_3:+16172764 | None:intergenic |
| CACAGCGTCTCTTCTAGCTG+AGG | 0.672362 | 8_3:+16174342 | None:intergenic |
| AGCAACGTCGTCATTCTCGG+TGG | 0.684710 | 8_3:+16174381 | None:intergenic |
| AATTTGACACAATAAGCCAA+AGG | 0.687500 | 8_3:+16172190 | None:intergenic |
| CAGCTCCTAAAACTTTACCA+CGG | 0.742080 | 8_3:+16172292 | None:intergenic |
| GAAGTGGCAGGAAAGTACCG+TGG | 0.755723 | 8_3:-16172309 | Msa1279290:CDS |
| GACGCTGTGTCAAAACAAGG+TGG | 0.763550 | 8_3:-16174328 | Msa1279290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTAAGTTAATTAAATT+AGG | - | chr8_3:16172617-16172636 | Msa1279290:CDS | 10.0% |
| !!! | AGTTTAAGTTAATTAAATTA+GGG | - | chr8_3:16172618-16172637 | Msa1279290:CDS | 10.0% |
| !!! | ATTTTTTGTGAAAAATTATT+AGG | - | chr8_3:16172923-16172942 | Msa1279290:intron | 10.0% |
| !!! | TAGTTTAAGTTAATTAAATT+AGG | - | chr8_3:16172617-16172636 | Msa1279290:CDS | 10.0% |
| !!! | AGTTTAAGTTAATTAAATTA+GGG | - | chr8_3:16172618-16172637 | Msa1279290:CDS | 10.0% |
| !!! | ATTTTTTGTGAAAAATTATT+AGG | - | chr8_3:16172923-16172942 | Msa1279290:intron | 10.0% |
| !!! | AATTAAATTAGGGTTTTAAA+TGG | - | chr8_3:16172628-16172647 | Msa1279290:CDS | 15.0% |
| !!! | AATTAAATTAGGGTTTTAAA+TGG | - | chr8_3:16172628-16172647 | Msa1279290:CDS | 15.0% |
| !! | TTATGAATAGACTTCAATAA+AGG | + | chr8_3:16172431-16172450 | None:intergenic | 20.0% |
| !!! | TCTTTCTTTCTTTCTTTTTT+TGG | - | chr8_3:16172495-16172514 | Msa1279290:CDS | 20.0% |
| !! | AAATAACAACATAAAGAGTA+GGG | + | chr8_3:16173053-16173072 | None:intergenic | 20.0% |
| !!! | GAAAGGTAAATAATAGTTTT+TGG | - | chr8_3:16173183-16173202 | Msa1279290:intron | 20.0% |
| !!! | TGAAGTGTCATAATTTAAAT+TGG | + | chr8_3:16173266-16173285 | None:intergenic | 20.0% |
| !!! | ACAGTTTTTTTTTTTTGAGA+GGG | + | chr8_3:16173369-16173388 | None:intergenic | 20.0% |
| !!! | AACAGTTTTTTTTTTTTGAG+AGG | + | chr8_3:16173370-16173389 | None:intergenic | 20.0% |
| !! | TTGATCCTTTGTTAAAAATT+AGG | - | chr8_3:16173429-16173448 | Msa1279290:intron | 20.0% |
| !!! | AAAGACCTAATTTTTAACAA+AGG | + | chr8_3:16173437-16173456 | None:intergenic | 20.0% |
| !!! | TGTTAAAAATTAGGTCTTTT+TGG | - | chr8_3:16173438-16173457 | Msa1279290:intron | 20.0% |
| !!! | AGAAAGTTAAAAGAAGTTTT+TGG | - | chr8_3:16173671-16173690 | Msa1279290:intron | 20.0% |
| !! | TTATGAATAGACTTCAATAA+AGG | + | chr8_3:16172431-16172450 | None:intergenic | 20.0% |
| !!! | TCTTTCTTTCTTTCTTTTTT+TGG | - | chr8_3:16172495-16172514 | Msa1279290:CDS | 20.0% |
| !! | AAATAACAACATAAAGAGTA+GGG | + | chr8_3:16173053-16173072 | None:intergenic | 20.0% |
| !!! | GAAAGGTAAATAATAGTTTT+TGG | - | chr8_3:16173183-16173202 | Msa1279290:intron | 20.0% |
| !!! | TGAAGTGTCATAATTTAAAT+TGG | + | chr8_3:16173266-16173285 | None:intergenic | 20.0% |
| !!! | ACAGTTTTTTTTTTTTGAGA+GGG | + | chr8_3:16173369-16173388 | None:intergenic | 20.0% |
| !!! | AACAGTTTTTTTTTTTTGAG+AGG | + | chr8_3:16173370-16173389 | None:intergenic | 20.0% |
| !! | TTGATCCTTTGTTAAAAATT+AGG | - | chr8_3:16173429-16173448 | Msa1279290:intron | 20.0% |
| !!! | AAAGACCTAATTTTTAACAA+AGG | + | chr8_3:16173437-16173456 | None:intergenic | 20.0% |
| !!! | TGTTAAAAATTAGGTCTTTT+TGG | - | chr8_3:16173438-16173457 | Msa1279290:intron | 20.0% |
| !!! | AGAAAGTTAAAAGAAGTTTT+TGG | - | chr8_3:16173671-16173690 | Msa1279290:intron | 20.0% |
| !!! | CATTTTGCTTTTCTTAACTT+TGG | - | chr8_3:16172540-16172559 | Msa1279290:CDS | 25.0% |
| !!! | TAAATTAGGGTTTTAAATGG+TGG | - | chr8_3:16172631-16172650 | Msa1279290:CDS | 25.0% |
| ! | AAGATTCAAAATTGCAATCT+GGG | + | chr8_3:16172776-16172795 | None:intergenic | 25.0% |
| ! | AAAGATTCAAAATTGCAATC+TGG | + | chr8_3:16172777-16172796 | None:intergenic | 25.0% |
| ! | CAAATAACAACATAAAGAGT+AGG | + | chr8_3:16173054-16173073 | None:intergenic | 25.0% |
| !! | AAAACTGTTTGATAGCATAT+TGG | - | chr8_3:16173381-16173400 | Msa1279290:intron | 25.0% |
| !! | TTTTAACAAAGGATCAAATC+AGG | + | chr8_3:16173426-16173445 | None:intergenic | 25.0% |
| !! | TTTTGTTAGAATGATAGTAG+TGG | - | chr8_3:16173507-16173526 | Msa1279290:intron | 25.0% |
| ! | TTACAAAAATGAGCTTAAGA+TGG | - | chr8_3:16173569-16173588 | Msa1279290:intron | 25.0% |
| !! | ATGGTTTTTATGATGAGTTT+TGG | - | chr8_3:16173588-16173607 | Msa1279290:intron | 25.0% |
| ! | TTAAAAAAAATCAAGCCTAC+AGG | + | chr8_3:16173617-16173636 | None:intergenic | 25.0% |
| ! | TAGTGTCTTTATTAAAAGTG+TGG | - | chr8_3:16173703-16173722 | Msa1279290:intron | 25.0% |
| ! | TGCAGAAATTGAAAAATTCA+AGG | - | chr8_3:16173774-16173793 | Msa1279290:intron | 25.0% |
| ! | ATTGAAAAATTCAAGGAGAT+TGG | - | chr8_3:16173781-16173800 | Msa1279290:intron | 25.0% |
| ! | TTGAAAAATTCAAGGAGATT+GGG | - | chr8_3:16173782-16173801 | Msa1279290:intron | 25.0% |
| !! | AATTTTGTTCATCAGAAGAA+TGG | + | chr8_3:16173912-16173931 | None:intergenic | 25.0% |
| !!! | AAATGTCTATTTTTTCTGTC+AGG | + | chr8_3:16173966-16173985 | None:intergenic | 25.0% |
| !! | GACAGAAAAAATAGACATTT+TGG | - | chr8_3:16173966-16173985 | Msa1279290:intron | 25.0% |
| ! | TAGATTCTTCCTTAGTATAA+AGG | + | chr8_3:16174062-16174081 | None:intergenic | 25.0% |
| !!! | CATTTTGCTTTTCTTAACTT+TGG | - | chr8_3:16172540-16172559 | Msa1279290:CDS | 25.0% |
| !!! | TAAATTAGGGTTTTAAATGG+TGG | - | chr8_3:16172631-16172650 | Msa1279290:CDS | 25.0% |
| ! | AAGATTCAAAATTGCAATCT+GGG | + | chr8_3:16172776-16172795 | None:intergenic | 25.0% |
| ! | AAAGATTCAAAATTGCAATC+TGG | + | chr8_3:16172777-16172796 | None:intergenic | 25.0% |
| ! | CAAATAACAACATAAAGAGT+AGG | + | chr8_3:16173054-16173073 | None:intergenic | 25.0% |
| !! | AAAACTGTTTGATAGCATAT+TGG | - | chr8_3:16173381-16173400 | Msa1279290:intron | 25.0% |
| !! | TTTTAACAAAGGATCAAATC+AGG | + | chr8_3:16173426-16173445 | None:intergenic | 25.0% |
| !! | TTTTGTTAGAATGATAGTAG+TGG | - | chr8_3:16173507-16173526 | Msa1279290:intron | 25.0% |
| ! | TTACAAAAATGAGCTTAAGA+TGG | - | chr8_3:16173569-16173588 | Msa1279290:intron | 25.0% |
| !! | ATGGTTTTTATGATGAGTTT+TGG | - | chr8_3:16173588-16173607 | Msa1279290:intron | 25.0% |
| ! | TTAAAAAAAATCAAGCCTAC+AGG | + | chr8_3:16173617-16173636 | None:intergenic | 25.0% |
| ! | TAGTGTCTTTATTAAAAGTG+TGG | - | chr8_3:16173703-16173722 | Msa1279290:intron | 25.0% |
| ! | TGCAGAAATTGAAAAATTCA+AGG | - | chr8_3:16173774-16173793 | Msa1279290:intron | 25.0% |
| ! | ATTGAAAAATTCAAGGAGAT+TGG | - | chr8_3:16173781-16173800 | Msa1279290:intron | 25.0% |
| ! | TTGAAAAATTCAAGGAGATT+GGG | - | chr8_3:16173782-16173801 | Msa1279290:intron | 25.0% |
| !! | AATTTTGTTCATCAGAAGAA+TGG | + | chr8_3:16173912-16173931 | None:intergenic | 25.0% |
| !!! | AAATGTCTATTTTTTCTGTC+AGG | + | chr8_3:16173966-16173985 | None:intergenic | 25.0% |
| !! | GACAGAAAAAATAGACATTT+TGG | - | chr8_3:16173966-16173985 | Msa1279290:intron | 25.0% |
| ! | TAGATTCTTCCTTAGTATAA+AGG | + | chr8_3:16174062-16174081 | None:intergenic | 25.0% |
| TTGCATATCAGTTACAACAA+GGG | + | chr8_3:16172808-16172827 | None:intergenic | 30.0% | |
| ATTGCATATCAGTTACAACA+AGG | + | chr8_3:16172809-16172828 | None:intergenic | 30.0% | |
| ACAATAGTGTTATAGCATGT+TGG | - | chr8_3:16172870-16172889 | Msa1279290:intron | 30.0% | |
| ! | TTTGTGTTACTCTGTTAGTT+TGG | - | chr8_3:16172966-16172985 | Msa1279290:intron | 30.0% |
| TCACACACTTATGAAAAGAA+AGG | - | chr8_3:16173166-16173185 | Msa1279290:intron | 30.0% | |
| AGACAGCAATTAATTTACAG+TGG | + | chr8_3:16173209-16173228 | None:intergenic | 30.0% | |
| ! | TCTAACTTTTTAACCCTGTT+TGG | - | chr8_3:16173333-16173352 | Msa1279290:intron | 30.0% |
| !! | TTTTAACCCTGTTTGGAATT+TGG | - | chr8_3:16173340-16173359 | Msa1279290:intron | 30.0% |
| AACAAAATTCATCAAGTTCC+AGG | - | chr8_3:16173923-16173942 | Msa1279290:intron | 30.0% | |
| ACAAAATTCATCAAGTTCCA+GGG | - | chr8_3:16173924-16173943 | Msa1279290:intron | 30.0% | |
| TGAATACGACCTTTATACTA+AGG | - | chr8_3:16174050-16174069 | Msa1279290:intron | 30.0% | |
| !! | TCATCATCTTTTTGATGGTA+AGG | + | chr8_3:16174170-16174189 | None:intergenic | 30.0% |
| ! | GCTTTTCATCATCTTTTTGA+TGG | + | chr8_3:16174175-16174194 | None:intergenic | 30.0% |
| AAAGATGATGAAAAGCTTGA+AGG | - | chr8_3:16174179-16174198 | Msa1279290:CDS | 30.0% | |
| GTAAGAAAAAGCAATATGTC+AGG | + | chr8_3:16174347-16174366 | None:intergenic | 30.0% | |
| AATTTGACACAATAAGCCAA+AGG | + | chr8_3:16174392-16174411 | None:intergenic | 30.0% | |
| TTGCATATCAGTTACAACAA+GGG | + | chr8_3:16172808-16172827 | None:intergenic | 30.0% | |
| ATTGCATATCAGTTACAACA+AGG | + | chr8_3:16172809-16172828 | None:intergenic | 30.0% | |
| ACAATAGTGTTATAGCATGT+TGG | - | chr8_3:16172870-16172889 | Msa1279290:intron | 30.0% | |
| ! | TTTGTGTTACTCTGTTAGTT+TGG | - | chr8_3:16172966-16172985 | Msa1279290:intron | 30.0% |
| TCACACACTTATGAAAAGAA+AGG | - | chr8_3:16173166-16173185 | Msa1279290:intron | 30.0% | |
| AGACAGCAATTAATTTACAG+TGG | + | chr8_3:16173209-16173228 | None:intergenic | 30.0% | |
| ! | TCTAACTTTTTAACCCTGTT+TGG | - | chr8_3:16173333-16173352 | Msa1279290:intron | 30.0% |
| !! | TTTTAACCCTGTTTGGAATT+TGG | - | chr8_3:16173340-16173359 | Msa1279290:intron | 30.0% |
| AACAAAATTCATCAAGTTCC+AGG | - | chr8_3:16173923-16173942 | Msa1279290:intron | 30.0% | |
| ACAAAATTCATCAAGTTCCA+GGG | - | chr8_3:16173924-16173943 | Msa1279290:intron | 30.0% | |
| TGAATACGACCTTTATACTA+AGG | - | chr8_3:16174050-16174069 | Msa1279290:intron | 30.0% | |
| !! | TCATCATCTTTTTGATGGTA+AGG | + | chr8_3:16174170-16174189 | None:intergenic | 30.0% |
| ! | GCTTTTCATCATCTTTTTGA+TGG | + | chr8_3:16174175-16174194 | None:intergenic | 30.0% |
| AAAGATGATGAAAAGCTTGA+AGG | - | chr8_3:16174179-16174198 | Msa1279290:CDS | 30.0% | |
| GTAAGAAAAAGCAATATGTC+AGG | + | chr8_3:16174347-16174366 | None:intergenic | 30.0% | |
| AATTTGACACAATAAGCCAA+AGG | + | chr8_3:16174392-16174411 | None:intergenic | 30.0% | |
| TCATAACCTTAAGCTTTCTC+AGG | - | chr8_3:16172445-16172464 | Msa1279290:CDS | 35.0% | |
| CACTATTGTGCATCTAAACA+GGG | + | chr8_3:16172859-16172878 | None:intergenic | 35.0% | |
| ACACTATTGTGCATCTAAAC+AGG | + | chr8_3:16172860-16172879 | None:intergenic | 35.0% | |
| ! | TTACTCTGTTAGTTTGGAAC+AGG | - | chr8_3:16172972-16172991 | Msa1279290:intron | 35.0% |
| TATTGGAATGCTTTAGTGAG+AGG | - | chr8_3:16173398-16173417 | Msa1279290:intron | 35.0% | |
| !! | AATTAGGTCTTTTTGGAGAG+AGG | - | chr8_3:16173445-16173464 | Msa1279290:intron | 35.0% |
| GTAGATAGTAGCATTCTCTT+TGG | + | chr8_3:16173540-16173559 | None:intergenic | 35.0% | |
| AATTCTAGATCAACAGCACT+TGG | + | chr8_3:16173868-16173887 | None:intergenic | 35.0% | |
| GAAGAATCTACTAGCACAAT+AGG | - | chr8_3:16174072-16174091 | Msa1279290:intron | 35.0% | |
| AGGTGAAAAATGTAAAGAGC+TGG | - | chr8_3:16174092-16174111 | Msa1279290:intron | 35.0% | |
| ! | CTTCAACCTTTTGCAGAAAA+AGG | + | chr8_3:16174134-16174153 | None:intergenic | 35.0% |
| GAGAAACAAGAAACAATGTC+TGG | - | chr8_3:16174219-16174238 | Msa1279290:CDS | 35.0% | |
| AAATCCAAATAAGCGTGAAG+TGG | - | chr8_3:16174254-16174273 | Msa1279290:CDS | 35.0% | |
| !! | AAGTACCGTGGTAAAGTTTT+AGG | - | chr8_3:16174282-16174301 | Msa1279290:CDS | 35.0% |
| ! | AGGAGACTTTTATGATTCAG+AGG | - | chr8_3:16174310-16174329 | Msa1279290:CDS | 35.0% |
| ACAGTTCATGCTGTTAATCT+TGG | - | chr8_3:16174365-16174384 | Msa1279290:CDS | 35.0% | |
| TCATAACCTTAAGCTTTCTC+AGG | - | chr8_3:16172445-16172464 | Msa1279290:CDS | 35.0% | |
| CACTATTGTGCATCTAAACA+GGG | + | chr8_3:16172859-16172878 | None:intergenic | 35.0% | |
| ACACTATTGTGCATCTAAAC+AGG | + | chr8_3:16172860-16172879 | None:intergenic | 35.0% | |
| ! | TTACTCTGTTAGTTTGGAAC+AGG | - | chr8_3:16172972-16172991 | Msa1279290:intron | 35.0% |
| TATTGGAATGCTTTAGTGAG+AGG | - | chr8_3:16173398-16173417 | Msa1279290:intron | 35.0% | |
| !! | AATTAGGTCTTTTTGGAGAG+AGG | - | chr8_3:16173445-16173464 | Msa1279290:intron | 35.0% |
| GTAGATAGTAGCATTCTCTT+TGG | + | chr8_3:16173540-16173559 | None:intergenic | 35.0% | |
| AATTCTAGATCAACAGCACT+TGG | + | chr8_3:16173868-16173887 | None:intergenic | 35.0% | |
| GAAGAATCTACTAGCACAAT+AGG | - | chr8_3:16174072-16174091 | Msa1279290:intron | 35.0% | |
| AGGTGAAAAATGTAAAGAGC+TGG | - | chr8_3:16174092-16174111 | Msa1279290:intron | 35.0% | |
| ! | CTTCAACCTTTTGCAGAAAA+AGG | + | chr8_3:16174134-16174153 | None:intergenic | 35.0% |
| GAGAAACAAGAAACAATGTC+TGG | - | chr8_3:16174219-16174238 | Msa1279290:CDS | 35.0% | |
| AAATCCAAATAAGCGTGAAG+TGG | - | chr8_3:16174254-16174273 | Msa1279290:CDS | 35.0% | |
| !! | AAGTACCGTGGTAAAGTTTT+AGG | - | chr8_3:16174282-16174301 | Msa1279290:CDS | 35.0% |
| ! | AGGAGACTTTTATGATTCAG+AGG | - | chr8_3:16174310-16174329 | Msa1279290:CDS | 35.0% |
| ACAGTTCATGCTGTTAATCT+TGG | - | chr8_3:16174365-16174384 | Msa1279290:CDS | 35.0% | |
| ! | GCGTTGTGGTTTAACAGTTT+TGG | - | chr8_3:16172730-16172749 | Msa1279290:CDS | 40.0% |
| TTGGAATGCTCTTTAGTGAG+AGG | - | chr8_3:16172889-16172908 | Msa1279290:intron | 40.0% | |
| ACCAAAAAGTGAGCTGAAGA+CGG | - | chr8_3:16173084-16173103 | Msa1279290:intron | 40.0% | |
| TCAGAGTACACACAATGTGA+TGG | - | chr8_3:16173283-16173302 | Msa1279290:intron | 40.0% | |
| ATGTGTCCTTGTTACTCAGT+CGG | - | chr8_3:16173468-16173487 | Msa1279290:intron | 40.0% | |
| !!! | GATGAGTTTTGGTTTCCTGT+AGG | - | chr8_3:16173599-16173618 | Msa1279290:intron | 40.0% |
| TTTCTGCAAGAGACGCATAT+TGG | + | chr8_3:16173762-16173781 | None:intergenic | 40.0% | |
| ! | ACTTCCTCACATGATGATGA+TGG | - | chr8_3:16173811-16173830 | Msa1279290:intron | 40.0% |
| TGATCCATCATCATCATGTG+AGG | + | chr8_3:16173818-16173837 | None:intergenic | 40.0% | |
| TTCCATGATTCATGCTCATC+TGG | - | chr8_3:16173886-16173905 | Msa1279290:intron | 40.0% | |
| !! | GTTCAAGCTCGCTTTTCAAT+CGG | + | chr8_3:16174005-16174024 | None:intergenic | 40.0% |
| TGAAAAGCGAGCTTGAACAA+AGG | - | chr8_3:16174007-16174026 | Msa1279290:intron | 40.0% | |
| GAAAAGCGAGCTTGAACAAA+GGG | - | chr8_3:16174008-16174027 | Msa1279290:intron | 40.0% | |
| ! | TGAGAGCCTTTTTCTGCAAA+AGG | - | chr8_3:16174125-16174144 | Msa1279290:CDS | 40.0% |
| ! | GATGGTAAGGTATTTGACCT+CGG | + | chr8_3:16174157-16174176 | None:intergenic | 40.0% |
| CAGCTCCTAAAACTTTACCA+CGG | + | chr8_3:16174290-16174309 | None:intergenic | 40.0% | |
| !!! | TGGTAAAGTTTTAGGAGCTG+AGG | - | chr8_3:16174290-16174309 | Msa1279290:CDS | 40.0% |
| TGCTGTTAATCTTGGTCCTT+TGG | - | chr8_3:16174373-16174392 | Msa1279290:CDS | 40.0% | |
| AAATTCAGTGCCCAATTCCA+GGG | - | chr8_3:16174407-16174426 | Msa1279290:CDS | 40.0% | |
| ! | GCGTTGTGGTTTAACAGTTT+TGG | - | chr8_3:16172730-16172749 | Msa1279290:CDS | 40.0% |
| TTGGAATGCTCTTTAGTGAG+AGG | - | chr8_3:16172889-16172908 | Msa1279290:intron | 40.0% | |
| ACCAAAAAGTGAGCTGAAGA+CGG | - | chr8_3:16173084-16173103 | Msa1279290:intron | 40.0% | |
| TCAGAGTACACACAATGTGA+TGG | - | chr8_3:16173283-16173302 | Msa1279290:intron | 40.0% | |
| ATGTGTCCTTGTTACTCAGT+CGG | - | chr8_3:16173468-16173487 | Msa1279290:intron | 40.0% | |
| !!! | GATGAGTTTTGGTTTCCTGT+AGG | - | chr8_3:16173599-16173618 | Msa1279290:intron | 40.0% |
| TTTCTGCAAGAGACGCATAT+TGG | + | chr8_3:16173762-16173781 | None:intergenic | 40.0% | |
| ! | ACTTCCTCACATGATGATGA+TGG | - | chr8_3:16173811-16173830 | Msa1279290:intron | 40.0% |
| TGATCCATCATCATCATGTG+AGG | + | chr8_3:16173818-16173837 | None:intergenic | 40.0% | |
| TTCCATGATTCATGCTCATC+TGG | - | chr8_3:16173886-16173905 | Msa1279290:intron | 40.0% | |
| !! | GTTCAAGCTCGCTTTTCAAT+CGG | + | chr8_3:16174005-16174024 | None:intergenic | 40.0% |
| TGAAAAGCGAGCTTGAACAA+AGG | - | chr8_3:16174007-16174026 | Msa1279290:intron | 40.0% | |
| GAAAAGCGAGCTTGAACAAA+GGG | - | chr8_3:16174008-16174027 | Msa1279290:intron | 40.0% | |
| ! | TGAGAGCCTTTTTCTGCAAA+AGG | - | chr8_3:16174125-16174144 | Msa1279290:CDS | 40.0% |
| ! | GATGGTAAGGTATTTGACCT+CGG | + | chr8_3:16174157-16174176 | None:intergenic | 40.0% |
| CAGCTCCTAAAACTTTACCA+CGG | + | chr8_3:16174290-16174309 | None:intergenic | 40.0% | |
| !!! | TGGTAAAGTTTTAGGAGCTG+AGG | - | chr8_3:16174290-16174309 | Msa1279290:CDS | 40.0% |
| TGCTGTTAATCTTGGTCCTT+TGG | - | chr8_3:16174373-16174392 | Msa1279290:CDS | 40.0% | |
| AAATTCAGTGCCCAATTCCA+GGG | - | chr8_3:16174407-16174426 | Msa1279290:CDS | 40.0% | |
| GTTGCTGTGTTTGGATTCAG+CGG | + | chr8_3:16172165-16172184 | None:intergenic | 45.0% | |
| AGAGACGCTGTGTCAAAACA+AGG | - | chr8_3:16172248-16172267 | Msa1279290:CDS | 45.0% | |
| ! | TCAAAACAAGGTGGTGGTTC+TGG | - | chr8_3:16172260-16172279 | Msa1279290:CDS | 45.0% |
| ! | TCTGGTAGCGAAGATTCTGT+AGG | - | chr8_3:16172278-16172297 | Msa1279290:CDS | 45.0% |
| ! | CTGGTAGCGAAGATTCTGTA+GGG | - | chr8_3:16172279-16172298 | Msa1279290:CDS | 45.0% |
| TGGAGTCAGAGGTAATGCTA+GGG | - | chr8_3:16172304-16172323 | Msa1279290:CDS | 45.0% | |
| GTGCATCCTGAGAAAGCTTA+AGG | + | chr8_3:16172454-16172473 | None:intergenic | 45.0% | |
| TCTCAGGATGCACTTCAACA+AGG | - | chr8_3:16172461-16172480 | Msa1279290:CDS | 45.0% | |
| CAGTTGAGGTCACATCACAT+CGG | + | chr8_3:16172705-16172724 | None:intergenic | 45.0% | |
| GCTCTTTAGTGAGAGGTTCT+TGG | - | chr8_3:16172896-16172915 | Msa1279290:intron | 45.0% | |
| !! | ACCGTCTTCAGCTCACTTTT+TGG | + | chr8_3:16173088-16173107 | None:intergenic | 45.0% |
| GGGCATCCAAATTCCAAACA+GGG | + | chr8_3:16173349-16173368 | None:intergenic | 45.0% | |
| ! | AGGGCATCCAAATTCCAAAC+AGG | + | chr8_3:16173350-16173369 | None:intergenic | 45.0% |
| AGCAGCTTCACTTCGACATT+TGG | + | chr8_3:16173842-16173861 | None:intergenic | 45.0% | |
| AAATGTCGAAGTGAAGCTGC+TGG | - | chr8_3:16173841-16173860 | Msa1279290:intron | 45.0% | |
| CAAATTCAGTGCCCAATTCC+AGG | - | chr8_3:16174406-16174425 | Msa1279290:CDS | 45.0% | |
| GTTGCTGTGTTTGGATTCAG+CGG | + | chr8_3:16172165-16172184 | None:intergenic | 45.0% | |
| AGAGACGCTGTGTCAAAACA+AGG | - | chr8_3:16172248-16172267 | Msa1279290:CDS | 45.0% | |
| ! | TCAAAACAAGGTGGTGGTTC+TGG | - | chr8_3:16172260-16172279 | Msa1279290:CDS | 45.0% |
| ! | TCTGGTAGCGAAGATTCTGT+AGG | - | chr8_3:16172278-16172297 | Msa1279290:CDS | 45.0% |
| ! | CTGGTAGCGAAGATTCTGTA+GGG | - | chr8_3:16172279-16172298 | Msa1279290:CDS | 45.0% |
| TGGAGTCAGAGGTAATGCTA+GGG | - | chr8_3:16172304-16172323 | Msa1279290:CDS | 45.0% | |
| GTGCATCCTGAGAAAGCTTA+AGG | + | chr8_3:16172454-16172473 | None:intergenic | 45.0% | |
| TCTCAGGATGCACTTCAACA+AGG | - | chr8_3:16172461-16172480 | Msa1279290:CDS | 45.0% | |
| CAGTTGAGGTCACATCACAT+CGG | + | chr8_3:16172705-16172724 | None:intergenic | 45.0% | |
| GCTCTTTAGTGAGAGGTTCT+TGG | - | chr8_3:16172896-16172915 | Msa1279290:intron | 45.0% | |
| !! | ACCGTCTTCAGCTCACTTTT+TGG | + | chr8_3:16173088-16173107 | None:intergenic | 45.0% |
| GGGCATCCAAATTCCAAACA+GGG | + | chr8_3:16173349-16173368 | None:intergenic | 45.0% | |
| ! | AGGGCATCCAAATTCCAAAC+AGG | + | chr8_3:16173350-16173369 | None:intergenic | 45.0% |
| AGCAGCTTCACTTCGACATT+TGG | + | chr8_3:16173842-16173861 | None:intergenic | 45.0% | |
| AAATGTCGAAGTGAAGCTGC+TGG | - | chr8_3:16173841-16173860 | Msa1279290:intron | 45.0% | |
| CAAATTCAGTGCCCAATTCC+AGG | - | chr8_3:16174406-16174425 | Msa1279290:CDS | 45.0% | |
| !! | TAATAATTTATATAATAATG+TGG | - | chr8_3:16172567-16172586 | Msa1279290:CDS | 5.0% |
| !! | TAATAATTTATATAATAATG+TGG | - | chr8_3:16172567-16172586 | Msa1279290:CDS | 5.0% |
| CTGTTGACGGTTGCTGTGTT+TGG | + | chr8_3:16172174-16172193 | None:intergenic | 50.0% | |
| GGAAGCAACGTCGTCATTCT+CGG | + | chr8_3:16172204-16172223 | None:intergenic | 50.0% | |
| GACGCTGTGTCAAAACAAGG+TGG | - | chr8_3:16172251-16172270 | Msa1279290:CDS | 50.0% | |
| GCTGTGTCAAAACAAGGTGG+TGG | - | chr8_3:16172254-16172273 | Msa1279290:CDS | 50.0% | |
| AGCGAAGATTCTGTAGGGTG+TGG | - | chr8_3:16172284-16172303 | Msa1279290:CDS | 50.0% | |
| GTGGAGTCAGAGGTAATGCT+AGG | - | chr8_3:16172303-16172322 | Msa1279290:CDS | 50.0% | |
| AAATTGCAATCTGGGTCGCG+AGG | + | chr8_3:16172768-16172787 | None:intergenic | 50.0% | |
| TCCTTGTTACTCAGTCGGCT+CGG | - | chr8_3:16173473-16173492 | Msa1279290:intron | 50.0% | |
| GGCCAGATGAGCATGAATCA+TGG | + | chr8_3:16173891-16173910 | None:intergenic | 50.0% | |
| AGCGAGCTTGAACAAAGGGA+TGG | - | chr8_3:16174012-16174031 | Msa1279290:intron | 50.0% | |
| AGCTTGAACAAAGGGATGGC+AGG | - | chr8_3:16174016-16174035 | Msa1279290:intron | 50.0% | |
| TCTGCAAAAGGTTGAAGCCG+AGG | - | chr8_3:16174137-16174156 | Msa1279290:CDS | 50.0% | |
| ! | CCTGCCACTTCACGCTTATT+TGG | + | chr8_3:16174261-16174280 | None:intergenic | 50.0% |
| CCAAATAAGCGTGAAGTGGC+AGG | - | chr8_3:16174258-16174277 | Msa1279290:CDS | 50.0% | |
| GGCACAAACTCCCTGGAATT+GGG | + | chr8_3:16174420-16174439 | None:intergenic | 50.0% | |
| CTGTTGACGGTTGCTGTGTT+TGG | + | chr8_3:16172174-16172193 | None:intergenic | 50.0% | |
| GGAAGCAACGTCGTCATTCT+CGG | + | chr8_3:16172204-16172223 | None:intergenic | 50.0% | |
| GACGCTGTGTCAAAACAAGG+TGG | - | chr8_3:16172251-16172270 | Msa1279290:CDS | 50.0% | |
| GCTGTGTCAAAACAAGGTGG+TGG | - | chr8_3:16172254-16172273 | Msa1279290:CDS | 50.0% | |
| AGCGAAGATTCTGTAGGGTG+TGG | - | chr8_3:16172284-16172303 | Msa1279290:CDS | 50.0% | |
| GTGGAGTCAGAGGTAATGCT+AGG | - | chr8_3:16172303-16172322 | Msa1279290:CDS | 50.0% | |
| AAATTGCAATCTGGGTCGCG+AGG | + | chr8_3:16172768-16172787 | None:intergenic | 50.0% | |
| TCCTTGTTACTCAGTCGGCT+CGG | - | chr8_3:16173473-16173492 | Msa1279290:intron | 50.0% | |
| GGCCAGATGAGCATGAATCA+TGG | + | chr8_3:16173891-16173910 | None:intergenic | 50.0% | |
| AGCGAGCTTGAACAAAGGGA+TGG | - | chr8_3:16174012-16174031 | Msa1279290:intron | 50.0% | |
| AGCTTGAACAAAGGGATGGC+AGG | - | chr8_3:16174016-16174035 | Msa1279290:intron | 50.0% | |
| TCTGCAAAAGGTTGAAGCCG+AGG | - | chr8_3:16174137-16174156 | Msa1279290:CDS | 50.0% | |
| ! | CCTGCCACTTCACGCTTATT+TGG | + | chr8_3:16174261-16174280 | None:intergenic | 50.0% |
| CCAAATAAGCGTGAAGTGGC+AGG | - | chr8_3:16174258-16174277 | Msa1279290:CDS | 50.0% | |
| GGCACAAACTCCCTGGAATT+GGG | + | chr8_3:16174420-16174439 | None:intergenic | 50.0% | |
| TCTCGGTGGCGTTCTGTTGA+CGG | + | chr8_3:16172187-16172206 | None:intergenic | 55.0% | |
| AGCAACGTCGTCATTCTCGG+TGG | + | chr8_3:16172201-16172220 | None:intergenic | 55.0% | |
| ! | TCTTCTAGCTGAGGACTCGC+CGG | + | chr8_3:16172231-16172250 | None:intergenic | 55.0% |
| ! | CACAGCGTCTCTTCTAGCTG+AGG | + | chr8_3:16172240-16172259 | None:intergenic | 55.0% |
| TCTGTAGGGTGTGGAGTCAG+AGG | - | chr8_3:16172293-16172312 | Msa1279290:CDS | 55.0% | |
| TCCGAGCCGACTGAGTAACA+AGG | + | chr8_3:16173477-16173496 | None:intergenic | 55.0% | |
| !! | GCTTGCTATCTGAAGCTCCC+TGG | + | chr8_3:16173944-16173963 | None:intergenic | 55.0% |
| !! | GAAGTGGCAGGAAAGTACCG+TGG | - | chr8_3:16174270-16174289 | Msa1279290:CDS | 55.0% |
| GGGCACAAACTCCCTGGAAT+TGG | + | chr8_3:16174421-16174440 | None:intergenic | 55.0% | |
| TTACGTGGGCACAAACTCCC+TGG | + | chr8_3:16174427-16174446 | None:intergenic | 55.0% | |
| TCTCGGTGGCGTTCTGTTGA+CGG | + | chr8_3:16172187-16172206 | None:intergenic | 55.0% | |
| AGCAACGTCGTCATTCTCGG+TGG | + | chr8_3:16172201-16172220 | None:intergenic | 55.0% | |
| ! | TCTTCTAGCTGAGGACTCGC+CGG | + | chr8_3:16172231-16172250 | None:intergenic | 55.0% |
| ! | CACAGCGTCTCTTCTAGCTG+AGG | + | chr8_3:16172240-16172259 | None:intergenic | 55.0% |
| TCTGTAGGGTGTGGAGTCAG+AGG | - | chr8_3:16172293-16172312 | Msa1279290:CDS | 55.0% | |
| TCCGAGCCGACTGAGTAACA+AGG | + | chr8_3:16173477-16173496 | None:intergenic | 55.0% | |
| !! | GCTTGCTATCTGAAGCTCCC+TGG | + | chr8_3:16173944-16173963 | None:intergenic | 55.0% |
| !! | GAAGTGGCAGGAAAGTACCG+TGG | - | chr8_3:16174270-16174289 | Msa1279290:CDS | 55.0% |
| GGGCACAAACTCCCTGGAAT+TGG | + | chr8_3:16174421-16174440 | None:intergenic | 55.0% | |
| TTACGTGGGCACAAACTCCC+TGG | + | chr8_3:16174427-16174446 | None:intergenic | 55.0% | |
| CCACAACGCGACTGCAGTTG+AGG | + | chr8_3:16172719-16172738 | None:intergenic | 60.0% | |
| CCTCAACTGCAGTCGCGTTG+TGG | - | chr8_3:16172716-16172735 | Msa1279290:CDS | 60.0% | |
| CCACAACGCGACTGCAGTTG+AGG | + | chr8_3:16172719-16172738 | None:intergenic | 60.0% | |
| CCTCAACTGCAGTCGCGTTG+TGG | - | chr8_3:16172716-16172735 | Msa1279290:CDS | 60.0% | |
| GACGACGTTGCTTCCGTCGC+CGG | - | chr8_3:16172209-16172228 | Msa1279290:CDS | 65.0% | |
| GACGACGTTGCTTCCGTCGC+CGG | - | chr8_3:16172209-16172228 | Msa1279290:CDS | 65.0% | |
| AGCTGAGGACTCGCCGGCGA+CGG | + | chr8_3:16172225-16172244 | None:intergenic | 70.0% | |
| AGCTGAGGACTCGCCGGCGA+CGG | + | chr8_3:16172225-16172244 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 16172155 | 16174446 | 16172155 | ID=Msa1279290;Name=Msa1279290 |
| chr8_3 | mRNA | 16172155 | 16174446 | 16172155 | ID=Msa1279290-mRNA-1;Parent=Msa1279290;Name=Msa1279290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|331 |
| chr8_3 | exon | 16174119 | 16174446 | 16174119 | ID=Msa1279290-mRNA-1:exon:6239;Parent=Msa1279290-mRNA-1 |
| chr8_3 | exon | 16172155 | 16172822 | 16172155 | ID=Msa1279290-mRNA-1:exon:6238;Parent=Msa1279290-mRNA-1 |
| chr8_3 | CDS | 16174119 | 16174446 | 16174119 | ID=Msa1279290-mRNA-1:cds;Parent=Msa1279290-mRNA-1 |
| chr8_3 | CDS | 16172155 | 16172822 | 16172155 | ID=Msa1279290-mRNA-1:cds;Parent=Msa1279290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
