AlfalfaGEDB | Msa1281630

M. sativa cultivar zhongmu-4 / Msa1281630

KEGG: K10875
GO: GO:0000003 GO:0000018 GO:0000166 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0022402 GO:0022414 GO:0030491 GO:0030554 GO:0030702 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032553 GO:0032555 GO:0032559 GO:0033170 GO:0034641 GO:0035639 GO:0035822 GO:0035825 GO:0035861 GO:0036094 GO:0040029 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048285 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051321 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0097367 GO:0140013 GO:0140097 GO:0140110 GO:1901265 GO:1901360 GO:1901363 GO:1902679 GO:1902680 GO:1903046 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00176.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281630	KEH19100.1	77.056	924	155	11	3	892	19	919	0.0	1391

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281630	sp\|Q9SIW2\|CHR35_ARATH	52.655	885	354	17	23	872	34	888	0.0	896

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281630	A0A072TZX4	77.056	924	155	11	3	892	19	919	0.0	1391

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1281630	TR	SNF2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1186050	Msa1281630	0.802533	5.362188e-49	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281630	MtrunA17_Chr8g0352361	78.396	898	143	10	3	872	19	893	0.0	1383
Msa1281630	MtrunA17_Chr2g0296421	73.293	820	149	10	80	872	266	1042	0.0	1198
Msa1281630	MtrunA17_Chr2g0296421	55.639	133	50	2	2	125	12	144	1.28e-33	139
Msa1281630	MtrunA17_Chr1g0191141	32.500	680	368	21	227	831	395	1058	3.63e-87	301
Msa1281630	MtrunA17_Chr7g0225791	32.704	636	340	16	261	831	628	1240	6.83e-87	302
Msa1281630	MtrunA17_Chr7g0224051	31.304	690	394	18	218	831	387	1072	1.98e-85	296
Msa1281630	MtrunA17_Chr7g0233021	32.348	643	340	20	261	831	567	1186	7.05e-85	296
Msa1281630	MtrunA17_Chr3g0114161	31.287	684	385	18	227	831	526	1203	2.05e-84	295
Msa1281630	MtrunA17_Chr4g0047081	31.438	633	352	16	261	831	578	1190	6.10e-83	290
Msa1281630	MtrunA17_Chr5g0437621	30.567	723	394	22	196	831	558	1259	4.30e-82	288

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281630	AT2G16390.1	52.655	885	354	17	23	872	34	888	0.0	896
Msa1281630	AT2G16390.2	52.655	885	354	17	23	872	37	891	0.0	896
Msa1281630	AT2G21450.3	51.788	699	302	7	197	873	39	724	0.0	731
Msa1281630	AT2G21450.1	51.788	699	302	7	197	873	130	815	0.0	730
Msa1281630	AT2G21450.2	51.788	699	302	7	197	873	137	822	0.0	730
Msa1281630	AT1G05490.1	30.460	696	390	18	213	831	675	1353	1.14e-85	300
Msa1281630	AT3G24340.1	30.279	753	405	22	147	837	374	1068	5.32e-85	295
Msa1281630	AT3G42670.2	30.339	679	396	19	223	831	539	1210	9.65e-77	273
Msa1281630	AT3G42670.3	30.339	679	396	19	223	831	539	1210	9.65e-77	273
Msa1281630	AT3G42670.1	30.339	679	396	19	223	831	539	1210	9.65e-77	273

Showing 1 to 10 of 77 entries

Previous1 2 3 4 5…8Next

Find 183 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGAATAGGTGCTGC+AGG	0.547225	8_3:-21333134	None:intergenic
AAAGAAATCTTTGTGATTTC+AGG	0.158671	8_3:+21336245	Msa1281630:CDS
AAAGATAAAGGTGTATATGT+TGG	0.509504	8_3:+21333508	Msa1281630:intron
AAAGATGGATGAATTTATAA+AGG	0.390193	8_3:+21336064	Msa1281630:CDS
AAAGGACTTAGATGTCGGAG+AGG	0.697802	8_3:+21336082	Msa1281630:CDS
AAAGTTCTTCACTATTACAG+AGG	0.579573	8_3:+21335840	Msa1281630:CDS
AACATCCAAGATGATGACAC+GGG	0.663891	8_3:-21336387	None:intergenic
AACTGGCGGTGTTAAAACAG+TGG	0.693932	8_3:+21335373	Msa1281630:CDS
AAGAAATGAGAATACTGAGA+TGG	0.600386	8_3:+21335542	Msa1281630:CDS
AAGGACTTAGATGTCGGAGA+GGG	0.601598	8_3:+21336083	Msa1281630:CDS

Showing 1 to 10 of 183 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTATAAACCATGTAGAGAA+TGG	+	chr8_3:21332861-21332880	Msa1281630:CDS	30.0%
AACCCGAAAAATGCAAATAT+TGG	+	chr8_3:21332923-21332942	Msa1281630:CDS	30.0%
ACCCGAAAAATGCAAATATT+GGG	+	chr8_3:21332924-21332943	Msa1281630:CDS	30.0%
AGAGAATAGGAAAGAATGTT+AGG	-	chr8_3:21333379-21333398	None:intergenic	30.0%
ATAATTGTTGCACAGAGAAT+AGG	-	chr8_3:21333392-21333411	None:intergenic	30.0%
TCTGTGCAACAATTATTTAC+AGG	+	chr8_3:21333396-21333415	Msa1281630:intron	30.0%
CTGTGCAACAATTATTTACA+GGG	+	chr8_3:21333397-21333416	Msa1281630:intron	30.0%
TATAGCACTAGGAAAGATAA+AGG	+	chr8_3:21333496-21333515	Msa1281630:intron	30.0%
GAAGATACATGTGTTTATAC+CGG	+	chr8_3:21333622-21333641	Msa1281630:CDS	30.0%
ACAAGAGGAAGAAGATAATA+AGG	+	chr8_3:21333648-21333667	Msa1281630:CDS	30.0%

Showing 1 to 10 of 308 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	21332562	21336754	21332562	ID=Msa1281630;Name=Msa1281630
chr8_3	mRNA	21332562	21336754	21332562	ID=Msa1281630-mRNA-1;Parent=Msa1281630;Name=Msa1281630-mRNA-1;_AED=0.03;_eAED=0.05;_QI=0\|0\|0\|0.85\|0.83\|0.71\|7\|0\|892
chr8_3	exon	21332562	21332565	21332562	ID=Msa1281630-mRNA-1:exon:7752;Parent=Msa1281630-mRNA-1
chr8_3	exon	21332751	21332969	21332751	ID=Msa1281630-mRNA-1:exon:7753;Parent=Msa1281630-mRNA-1
chr8_3	exon	21332994	21333235	21332994	ID=Msa1281630-mRNA-1:exon:7754;Parent=Msa1281630-mRNA-1
chr8_3	exon	21333418	21333463	21333418	ID=Msa1281630-mRNA-1:exon:7755;Parent=Msa1281630-mRNA-1
chr8_3	exon	21333518	21333738	21333518	ID=Msa1281630-mRNA-1:exon:7756;Parent=Msa1281630-mRNA-1
chr8_3	exon	21334399	21334548	21334399	ID=Msa1281630-mRNA-1:exon:7757;Parent=Msa1281630-mRNA-1
chr8_3	exon	21334958	21336754	21334958	ID=Msa1281630-mRNA-1:exon:7758;Parent=Msa1281630-mRNA-1
chr8_3	CDS	21332562	21332565	21332562	ID=Msa1281630-mRNA-1:cds;Parent=Msa1281630-mRNA-1
chr8_3	CDS	21332751	21332969	21332751	ID=Msa1281630-mRNA-1:cds;Parent=Msa1281630-mRNA-1
chr8_3	CDS	21332994	21333235	21332994	ID=Msa1281630-mRNA-1:cds;Parent=Msa1281630-mRNA-1
chr8_3	CDS	21333418	21333463	21333418	ID=Msa1281630-mRNA-1:cds;Parent=Msa1281630-mRNA-1
chr8_3	CDS	21333518	21333738	21333518	ID=Msa1281630-mRNA-1:cds;Parent=Msa1281630-mRNA-1
chr8_3	CDS	21334399	21334548	21334399	ID=Msa1281630-mRNA-1:cds;Parent=Msa1281630-mRNA-1
chr8_3	CDS	21334958	21336754	21334958	ID=Msa1281630-mRNA-1:cds;Parent=Msa1281630-mRNA-1

Gene Sequence

>Msa1281630

ATGGGAATTTCATCTGAGGAAGGATGTAAAGAACTTAAATTATCAAGTGATAGCTTGCCATATTCGGCAAATGCTTATGTTGTAGATTACAAAAATCCGCATGCAATCACAGATGTTATAAACCATGTAGAGAATGGACAATATGGTAGTGTGACAAAGGATATTGATGCCCTTATAACCCGAAAAATGCAAATATTGGGCCCTTACTTTGCTCAACATCCGAGGGTGACAGATCATGAAGAAACTCACCCTTTGGAAAACATAAAAGTTACTGGTATGTCACATCAAAATGTCAAAAATTTTGATTTTGACAGAAGGCATATTCAGAAGGATGTTGCGGCACCAAAAAGAGAAAAGAATGTTCCTGCAGCACCTATTCCTGTTTTTCATCAATTTGTATCGCTGAAACCTATTTTTCATAGAGTTTTATTGCCGAAACGGGAGACTCCTGCAATAAAAATGATTGGCTATCAAGATGCTCCTAATTATGCTTACCCTGGAGAAAGTTCAGGTGTATATGTTGGTGTACATGAGGAAGAAGATAATCATGTTGCTGCTGAAGATAACAGTGTTTATGGTCGTGTACAAGAGGAAGAGGATAACAAGGTTGATGCTGAAGATACATGTGTTTATACCGGTGTACAAGAGGAAGAAGATAATAAGGTTGATGTTGAAGATGACGGGCTAGAAGATATGTGGAGGGAGATGTCAATGGCAATAGAAACTTCTAAAGATGTTTCTGCAGATCCTCCACCTGAAGATGAGGAAGAAGATCCTGACTGTGATCATTCTTTCATTCTAAAAGACGATCTTGGATATGTTTGTCGTGTTTGTGGGGTTATTGACAAAGGAATCGAAACCATATTTGAGTTTCAATACAAGGTTAAAAGGAGCACCAGGACTTGTATGTCCGATTCATCGAAAGCCAAAGAAAAAGTGGATGCGTTTGGAGTGAAGATTGCTGAAGAAGATTTCTTGGTAACTGACATATCAGCCCATCCTCGGCATGCAAATCAAATGAAACCGCACCAAGTTGAAGGATTCAACTTTCTCGCCAGAAACTTGGCGGGGGACCATCCCGGGGGATGCATCCTGGCTCATGCTCCGGGATCCGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCTGATGCCCGACCTCTTGTGGTGCTTCCGAAGGGAATATTGTCAACTTGGAAAAAAGAGTTTCAAACATGGCAAGTGGAAGATATACCGCTCTATGACCTATACACTGTGAGGGCTGACAGTAGACCTCAGCAACTGGCGGTGTTAAAACAGTGGATGGATAACAAAAGTATCCTTTTCTTAGGATACAAACAGTTGGCTAACATTGTGTGTGATAAAAGTAATAACAATGCAACAATATCTTGCCAAGAGATATTGCTTAAGGTTCCCTCACTTCTCATTTTAGATGAGGGACACACTCCAAGAAATGAGAATACTGAGATGGTACAGTCCCTTGCCAAAATACAAACACCAAGGAAAGTTGTATTGTCTGGAACTCTTTATCAAAATCATGTTAGGGAGGTCTTCAATGTTCTAAATCTTGTTCGGCCAAAGTTCTTGAATATGGAGGCGTCTAAGCCTATTGTTCGGCGCATTCAGAGCAGGATCCATATGCCTGGTGTGAAACGCTTTGATGAATTGGTTGAGAATATATTACAGAAGGATCCAGATTTTAAAAGGAAAGTGGCTGTAATTCATGATTTGCGTGAGATGACCAGCAAAGTTCTTCACTATTACAGAGGAGATTTTCTTGATGAGCTTCCTGGCCTGGTAGATTTCACTGTGTTGCTGAAACTTACTCCAAGACAGAAGCAGGAACTTAAGATAGTGAAGATGACACATATAAAGTTCAAAAAGTCTTCTGTAGGCAGTGCAGTGTATATGCACCCAAATTTGAAGCCCATTGCAGAAAATAATGATGAAAAATCCACATATGATCATATAAAGATGGATGAATTTATAAAGGACTTAGATGTCGGAGAGGGAGTTAAATCGAAATTCTTTCGCAATATGCTGAACCTATGTGAATCAGCTGGGGAGAAACTTCTGGTGTTCAGTCAATACCTATTGACTTTGAAATATTTGGAAAGGTTAGCCATGAAGTGGAAGGGTTGGAGTCTCGGAAAAGAAATCTTTGTGATTTCAGGAGAATCATCCGCTGAACAAAGAGAGTTTTCCATGGAGAAGTTTAACAATTCACCCGAGGCAAAAGTATTGTTTGGCTCAATCAGAGCATGTAGTGAGGGGATATCATTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTTCATCTCAACCCATCTGTTACTCGTCAAGCTATTGGCCGTGCTTTTCGACCAGGCCAGAAAAAGAAAGTCTTTGTGTATCGACTGATAGCGGCTGATTCTCCAGAAGAGGAAGATCACCGTACTTGTTTCAAGAAGGAATTGATCTCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGAACGTGCATTTCAAGTGGAGACACTAGATGTGAAAGAATGTGGCGATCTATTTCTCGAGAGCCCATTGTTAGGGGAAGACGTAAAAGCTGTGTATAAAAGGTTAGCCAACTTTTACTTACCTTTTTGCGTATCACACGAAAGTATGGCATTTATTTTGTCCTAA

Protein sequence

>Msa1281630

MGISSEEGCKELKLSSDSLPYSANAYVVDYKNPHAITDVINHVENGQYGSVTKDIDALITRKMQILGPYFAQHPRVTDHEETHPLENIKVTGMSHQNVKNFDFDRRHIQKDVAAPKREKNVPAAPIPVFHQFVSLKPIFHRVLLPKRETPAIKMIGYQDAPNYAYPGESSGVYVGVHEEEDNHVAAEDNSVYGRVQEEEDNKVDAEDTCVYTGVQEEEDNKVDVEDDGLEDMWREMSMAIETSKDVSADPPPEDEEEDPDCDHSFILKDDLGYVCRVCGVIDKGIETIFEFQYKVKRSTRTCMSDSSKAKEKVDAFGVKIAEEDFLVTDISAHPRHANQMKPHQVEGFNFLARNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPDARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVRADSRPQQLAVLKQWMDNKSILFLGYKQLANIVCDKSNNNATISCQEILLKVPSLLILDEGHTPRNENTEMVQSLAKIQTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLNMEASKPIVRRIQSRIHMPGVKRFDELVENILQKDPDFKRKVAVIHDLREMTSKVLHYYRGDFLDELPGLVDFTVLLKLTPRQKQELKIVKMTHIKFKKSSVGSAVYMHPNLKPIAENNDEKSTYDHIKMDEFIKDLDVGEGVKSKFFRNMLNLCESAGEKLLVFSQYLLTLKYLERLAMKWKGWSLGKEIFVISGESSAEQREFSMEKFNNSPEAKVLFGSIRACSEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHRTCFKKELISKMWFEWNEYCGERAFQVETLDVKECGDLFLESPLLGEDVKAVYKRLANFYLPFCVSHESMAFILS*