Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289910 | sp|O04197|COI1_ARATH | 43.750 | 128 | 63 | 2 | 66 | 190 | 1 | 122 | 1.11e-29 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289910 | A0A396GRA2 | 88.608 | 79 | 9 | 0 | 110 | 188 | 11 | 89 | 2.37e-42 | 159 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0405680 | Msa1289910 | 0.810930 | 9.023912e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289910 | MtrunA17_Chr8g0364131 | 88.608 | 79 | 9 | 0 | 110 | 188 | 11 | 89 | 4.56e-46 | 159 |
| Msa1289910 | MtrunA17_Chr5g0436511 | 48.800 | 125 | 56 | 2 | 66 | 190 | 1 | 117 | 2.28e-37 | 136 |
| Msa1289910 | MtrunA17_Chr3g0113151 | 47.899 | 119 | 55 | 2 | 73 | 190 | 9 | 121 | 8.60e-33 | 124 |
| Msa1289910 | MtrunA17_Chr1g0196061 | 37.097 | 124 | 72 | 1 | 67 | 190 | 3 | 120 | 1.26e-20 | 89.4 |
| Msa1289910 | MtrunA17_Chr7g0251831 | 33.333 | 114 | 65 | 2 | 80 | 193 | 6 | 108 | 6.51e-16 | 75.5 |
| Msa1289910 | MtrunA17_Chr8g0387211 | 36.559 | 93 | 53 | 1 | 80 | 172 | 9 | 95 | 3.72e-15 | 73.6 |
| Msa1289910 | MtrunA17_Chr4g0048391 | 32.456 | 114 | 71 | 1 | 75 | 188 | 23 | 130 | 1.25e-14 | 72.0 |
| Msa1289910 | MtrunA17_Chr5g0439771 | 34.667 | 75 | 49 | 0 | 115 | 189 | 25 | 99 | 3.83e-11 | 58.5 |
| Msa1289910 | MtrunA17_Chr5g0427061 | 28.986 | 138 | 81 | 2 | 51 | 188 | 35 | 155 | 7.82e-11 | 60.8 |
| Msa1289910 | MtrunA17_Chr3g0133241 | 27.559 | 127 | 82 | 2 | 62 | 188 | 9 | 125 | 9.17e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289910 | AT2G39940.1 | 43.750 | 128 | 63 | 2 | 66 | 190 | 1 | 122 | 1.13e-30 | 118 |
| Msa1289910 | AT3G62980.1 | 35.897 | 117 | 69 | 1 | 72 | 188 | 3 | 113 | 2.13e-17 | 80.5 |
| Msa1289910 | AT1G12820.1 | 36.697 | 109 | 63 | 1 | 80 | 188 | 6 | 108 | 9.61e-17 | 78.6 |
| Msa1289910 | AT4G03190.1 | 34.259 | 108 | 65 | 1 | 81 | 188 | 8 | 109 | 1.04e-16 | 78.6 |
| Msa1289910 | AT3G26810.1 | 35.135 | 111 | 66 | 1 | 80 | 190 | 6 | 110 | 2.10e-16 | 77.4 |
| Msa1289910 | AT5G49980.1 | 31.532 | 111 | 70 | 1 | 78 | 188 | 54 | 158 | 4.90e-14 | 70.5 |
| Msa1289910 | AT4G24390.2 | 30.631 | 111 | 71 | 1 | 78 | 188 | 54 | 158 | 6.47e-13 | 67.4 |
| Msa1289910 | AT4G24390.1 | 30.631 | 111 | 71 | 1 | 78 | 188 | 54 | 158 | 6.47e-13 | 67.4 |
Find 58 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTAAATATGTGCTTTAT+TGG | 0.120909 | 8_3:+44388943 | Msa1289910:three_prime_UTR |
| ACTTCTCCTTAAATTCTTTC+AGG | 0.165657 | 8_3:-44388799 | None:intergenic |
| TATACACCTGAAAGAATTTA+AGG | 0.170944 | 8_3:+44388793 | Msa1289910:CDS |
| GAAGTTTAGGAAACCGTTTC+TGG | 0.204588 | 8_3:-44388649 | None:intergenic |
| GAAATCACGTCTCTGTCTTT+AGG | 0.247533 | 8_3:-44388359 | None:intergenic |
| CAGAGACGTGATTTCTTCTA+AGG | 0.279842 | 8_3:+44388367 | Msa1289910:CDS |
| AGCTTCAATGATTGAAGTTT+AGG | 0.292789 | 8_3:-44388662 | None:intergenic |
| GCAATATAATATTAAAATAA+TGG | 0.307713 | 8_3:+44386581 | Msa1289910:CDS |
| ACAGAAGCAAGTTGTATTAG+AGG | 0.314900 | 8_3:+44388878 | Msa1289910:three_prime_UTR |
| CTTAGAAATCTAATGTGATT+TGG | 0.319320 | 8_3:+44389036 | Msa1289910:three_prime_UTR |
| AAATCACGTCTCTGTCTTTA+GGG | 0.338434 | 8_3:-44388358 | None:intergenic |
| AAACCTAGGGCAGCAAAGTT+TGG | 0.355314 | 8_3:+44388692 | Msa1289910:CDS |
| CATTGCTACAGTCCCCTTCC+AGG | 0.358270 | 8_3:+44386630 | Msa1289910:CDS |
| ATTTCTAAGTTAGAAACAAC+CGG | 0.398845 | 8_3:-44389022 | None:intergenic |
| GGACTGTAGCAATGAGTTAC+CGG | 0.414468 | 8_3:-44386621 | None:intergenic |
| ACGTAAGGAATGGAGGGATA+TGG | 0.417017 | 8_3:+44388565 | Msa1289910:CDS |
| ATTGTGTAATATGAAATAAA+AGG | 0.419983 | 8_3:+44389103 | Msa1289910:three_prime_UTR |
| CTCAAAGAAGGCTCAATCTT+CGG | 0.432555 | 8_3:+44386509 | Msa1289910:CDS |
| TTCAATCATTGAAGCTCAAA+GGG | 0.450463 | 8_3:+44388669 | Msa1289910:CDS |
| CTTTCAGCAATGCAGAATGA+AGG | 0.453027 | 8_3:+44388269 | Msa1289910:intron |
| GGAGTGGAGGCGTAAATTAG+AGG | 0.457653 | 8_3:-44388617 | None:intergenic |
| ACTCAGAAACCTGCTTTCTC+AGG | 0.483471 | 8_3:+44388466 | Msa1289910:intron |
| TGTATGAGAATGATGATTGA+TGG | 0.484318 | 8_3:+44389076 | Msa1289910:three_prime_UTR |
| CTTCAATCATTGAAGCTCAA+AGG | 0.493223 | 8_3:+44388668 | Msa1289910:CDS |
| GCATAACCTCCCCAATTCTC+TGG | 0.498136 | 8_3:-44388722 | None:intergenic |
| TGAAGCTCAAAGGGAAACCT+AGG | 0.503995 | 8_3:+44388678 | Msa1289910:CDS |
| GAGTTACCGGTGGATGATCT+TGG | 0.506380 | 8_3:-44386608 | None:intergenic |
| CATCTAACAAACAGCACGTA+AGG | 0.521525 | 8_3:+44388550 | Msa1289910:intron |
| AGAAATCTAATGTGATTTGG+TGG | 0.524157 | 8_3:+44389039 | Msa1289910:three_prime_UTR |
| ATGTTGATGATTTATGAAGA+TGG | 0.526133 | 8_3:+44385686 | Msa1289910:CDS |
| AGTTAGTTACCTGAGAAAGC+AGG | 0.531547 | 8_3:-44388475 | None:intergenic |
| AAACCAAACTTTGCTGCCCT+AGG | 0.535594 | 8_3:-44388695 | None:intergenic |
| AACAAACAGCACGTAAGGAA+TGG | 0.541417 | 8_3:+44388555 | Msa1289910:intron |
| GACACAAATATGTGCTTGCC+CGG | 0.541908 | 8_3:+44389003 | Msa1289910:three_prime_UTR |
| TCACAGTGAGAGACATGATA+AGG | 0.546787 | 8_3:-44386539 | None:intergenic |
| GGGGAGGTTATGCTTCTCCA+TGG | 0.548070 | 8_3:+44388732 | Msa1289910:CDS |
| TGTCTCTCACTGTGAGTGAG+TGG | 0.565502 | 8_3:+44386547 | Msa1289910:CDS |
| TATAATATTAAAATAATGGA+CGG | 0.575143 | 8_3:+44386585 | Msa1289910:CDS |
| ATCTTAATAGGTCTCAAAGA+AGG | 0.579943 | 8_3:+44386497 | Msa1289910:intron |
| AAACAGCACGTAAGGAATGG+AGG | 0.587212 | 8_3:+44388558 | Msa1289910:intron |
| GAGCTGGTGAGGTGTGTATG+TGG | 0.590402 | 8_3:+44388981 | Msa1289910:three_prime_UTR |
| TCTAATTTACGCCTCCACTC+CGG | 0.602900 | 8_3:+44388619 | Msa1289910:CDS |
| AAAGAAGGCTCAATCTTCGG+TGG | 0.604027 | 8_3:+44386512 | Msa1289910:CDS |
| AACAGCACGTAAGGAATGGA+GGG | 0.620217 | 8_3:+44388559 | Msa1289910:intron |
| TTTATACCAGAGAATTGGGG+AGG | 0.624223 | 8_3:+44388716 | Msa1289910:CDS |
| TGAATATGAAGAAGACAATG+AGG | 0.638416 | 8_3:+44385712 | Msa1289910:CDS |
| TTTCTAAGTTAGAAACAACC+GGG | 0.642109 | 8_3:-44389021 | None:intergenic |
| GAAGCTCAAAGGGAAACCTA+GGG | 0.650685 | 8_3:+44388679 | Msa1289910:CDS |
| GTGATTTGGTGGATAGTGAG+AGG | 0.656410 | 8_3:+44389050 | Msa1289910:three_prime_UTR |
| TGATTTGGTGGATAGTGAGA+GGG | 0.656561 | 8_3:+44389051 | Msa1289910:three_prime_UTR |
| ATGAGAATGATGATTGATGG+TGG | 0.657149 | 8_3:+44389079 | Msa1289910:three_prime_UTR |
| CTGTAGCAATGAGTTACCGG+TGG | 0.668246 | 8_3:-44386618 | None:intergenic |
| GTTGCTGATGAAGAGAGAGC+TGG | 0.669682 | 8_3:+44388965 | Msa1289910:three_prime_UTR |
| GGACGGCCAAGATCATCCAC+CGG | 0.671415 | 8_3:+44386602 | Msa1289910:CDS |
| TGATGAAGCTCTGAAACGCA+TGG | 0.679400 | 8_3:+44388319 | Msa1289910:CDS |
| TGATGAAGAGAGAGCTGGTG+AGG | 0.682488 | 8_3:+44388970 | Msa1289910:three_prime_UTR |
| GGGATATGGATTCAGATACA+CGG | 0.707220 | 8_3:+44388579 | Msa1289910:CDS |
| TGAAGCTCTGAAACGCATGG+TGG | 0.761071 | 8_3:+44388322 | Msa1289910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTAATTATATTT+AGG | + | chr8_3:44387681-44387700 | Msa1289910:intron | 0.0% |
| !! | GCAATATAATATTAAAATAA+TGG | + | chr8_3:44386581-44386600 | Msa1289910:CDS | 10.0% |
| !!! | TATAATATTAAAATAATGGA+CGG | + | chr8_3:44386585-44386604 | Msa1289910:CDS | 10.0% |
| !! | ATTAAAAATTGTCAAATATT+AGG | + | chr8_3:44387855-44387874 | Msa1289910:intron | 10.0% |
| !! | TTAAACTAAACAAAATAATG+AGG | + | chr8_3:44385843-44385862 | Msa1289910:intron | 15.0% |
| !!! | ACATTTGAGATTAAAATTAA+CGG | + | chr8_3:44385903-44385922 | Msa1289910:intron | 15.0% |
| !! | ATTAACAAATGTATATTTGA+GGG | + | chr8_3:44385941-44385960 | Msa1289910:intron | 15.0% |
| !!! | CTTTTTCATATCATTTATTA+AGG | + | chr8_3:44386048-44386067 | Msa1289910:intron | 15.0% |
| !! | AAAAAACATTTAATCAAAGA+AGG | + | chr8_3:44386375-44386394 | Msa1289910:intron | 15.0% |
| !! | ATATTAAATATGTGCTTTAT+TGG | + | chr8_3:44388943-44388962 | Msa1289910:three_prime_UTR | 15.0% |
| !! | GTAGAAAGTTGAAAATAATT+AGG | + | chr8_3:44385744-44385763 | Msa1289910:intron | 20.0% |
| !! | AAACAAAATAATGAGGTATA+TGG | + | chr8_3:44385850-44385869 | Msa1289910:intron | 20.0% |
| !!! | ATTTTAATCTCAAATGTCTA+TGG | - | chr8_3:44385900-44385919 | None:intergenic | 20.0% |
| !! | GATTAACAAATGTATATTTG+AGG | + | chr8_3:44385940-44385959 | Msa1289910:intron | 20.0% |
| !!! | TCACTCTAAAAATTTCTTTT+CGG | - | chr8_3:44385968-44385987 | None:intergenic | 20.0% |
| !!! | CTTATTTGTTGTTTTCATTT+TGG | - | chr8_3:44385996-44386015 | None:intergenic | 20.0% |
| !! | AATGAAAACAACAAATAAGT+TGG | + | chr8_3:44385997-44386016 | Msa1289910:intron | 20.0% |
| !! | ATGAAAACAACAAATAAGTT+GGG | + | chr8_3:44385998-44386017 | Msa1289910:intron | 20.0% |
| !!! | AAATGTAATTAATTTTGCGT+GGG | - | chr8_3:44386107-44386126 | None:intergenic | 20.0% |
| !!! | AAAATGTAATTAATTTTGCG+TGG | - | chr8_3:44386108-44386127 | None:intergenic | 20.0% |
| !!! | CCTAAATTATATGACAATTT+TGG | - | chr8_3:44386148-44386167 | None:intergenic | 20.0% |
| !! | CCAAAATTGTCATATAATTT+AGG | + | chr8_3:44386145-44386164 | Msa1289910:intron | 20.0% |
| !! | TTAAGATAACTTTACAACAA+CGG | - | chr8_3:44386484-44386503 | None:intergenic | 20.0% |
| !! | TGTTGTAAAGTTATCTTAAT+AGG | + | chr8_3:44386485-44386504 | Msa1289910:intron | 20.0% |
| !! | TTGAAAATACGAAACAATAA+CGG | - | chr8_3:44386721-44386740 | None:intergenic | 20.0% |
| !! | TACTCTAAACGTTAATATAT+TGG | - | chr8_3:44386981-44387000 | None:intergenic | 20.0% |
| !! | ATACAATTATTATGAGATAG+AGG | + | chr8_3:44387230-44387249 | Msa1289910:intron | 20.0% |
| !! | TACAATTATTATGAGATAGA+GGG | + | chr8_3:44387231-44387250 | Msa1289910:intron | 20.0% |
| !!! | TTATTTTGTCACTGTAAAAT+AGG | + | chr8_3:44387335-44387354 | Msa1289910:intron | 20.0% |
| !!! | ATGAGTCAATTTTAATCATA+AGG | + | chr8_3:44387649-44387668 | Msa1289910:intron | 20.0% |
| !!! | TTTTATAACAAGTGAAAGTA+AGG | - | chr8_3:44388172-44388191 | None:intergenic | 20.0% |
| !!! | CTAACTTATTTTGTAACTAA+TGG | + | chr8_3:44388520-44388539 | Msa1289910:intron | 20.0% |
| !!! | ATGTTGATGATTTATGAAGA+TGG | + | chr8_3:44385686-44385705 | Msa1289910:CDS | 25.0% |
| ! | GAAAGTTGAAAATAATTAGG+TGG | + | chr8_3:44385747-44385766 | Msa1289910:intron | 25.0% |
| ! | TGAAAACAACAAATAAGTTG+GGG | + | chr8_3:44385999-44386018 | Msa1289910:intron | 25.0% |
| ! | ATTGTAGAAAACATTCTTAG+TGG | - | chr8_3:44386429-44386448 | None:intergenic | 25.0% |
| !!! | TATTTTGAAATAACCTGGAA+GGG | - | chr8_3:44386646-44386665 | None:intergenic | 25.0% |
| !!! | CATTGTATTTTGAAATAACC+TGG | - | chr8_3:44386651-44386670 | None:intergenic | 25.0% |
| ! | TCAAAATACAATGAATGACA+CGG | + | chr8_3:44386658-44386677 | Msa1289910:intron | 25.0% |
| ! | TGAAAATACGAAACAATAAC+GGG | - | chr8_3:44386720-44386739 | None:intergenic | 25.0% |
| !! | TTTTCAACTTTTATCCTAGA+CGG | + | chr8_3:44386734-44386753 | Msa1289910:intron | 25.0% |
| ! | ACTTCTTAGACTTATTTACA+TGG | - | chr8_3:44386945-44386964 | None:intergenic | 25.0% |
| ! | AATTGAGATATGATTTCTAC+AGG | + | chr8_3:44387526-44387545 | Msa1289910:intron | 25.0% |
| ! | TTGATTGTTTGATATCTTGA+AGG | - | chr8_3:44387592-44387611 | None:intergenic | 25.0% |
| ! | CTAATTGATTATGCATAACA+TGG | + | chr8_3:44388433-44388452 | Msa1289910:intron | 25.0% |
| !! | TTTTGAATCATTCTAATCCA+TGG | - | chr8_3:44388752-44388771 | None:intergenic | 25.0% |
| ! | TATACACCTGAAAGAATTTA+AGG | + | chr8_3:44388793-44388812 | Msa1289910:CDS | 25.0% |
| ! | ATTTCTAAGTTAGAAACAAC+CGG | - | chr8_3:44389025-44389044 | None:intergenic | 25.0% |
| ! | CTTAGAAATCTAATGTGATT+TGG | + | chr8_3:44389036-44389055 | Msa1289910:three_prime_UTR | 25.0% |
| TGAATATGAAGAAGACAATG+AGG | + | chr8_3:44385712-44385731 | Msa1289910:CDS | 30.0% | |
| TGAAAATAATTAGGTGGTGA+TGG | + | chr8_3:44385753-44385772 | Msa1289910:intron | 30.0% | |
| AGTAGACAAGCATAATCTAA+TGG | + | chr8_3:44385791-44385810 | Msa1289910:intron | 30.0% | |
| TTAATCTCAAATGTCTATGG+TGG | - | chr8_3:44385897-44385916 | None:intergenic | 30.0% | |
| ! | GAAAACAACAAATAAGTTGG+GGG | + | chr8_3:44386000-44386019 | Msa1289910:intron | 30.0% |
| !! | GAAATTGATAGTGATTCTTG+AGG | + | chr8_3:44386268-44386287 | Msa1289910:intron | 30.0% |
| CGAGTATTATCTGTTTGAAT+GGG | - | chr8_3:44386331-44386350 | None:intergenic | 30.0% | |
| CCATTCAAACAGATAATACT+CGG | + | chr8_3:44386329-44386348 | Msa1289910:intron | 30.0% | |
| ATCTTAATAGGTCTCAAAGA+AGG | + | chr8_3:44386497-44386516 | Msa1289910:intron | 30.0% | |
| !!! | ATTTTGAAATAACCTGGAAG+GGG | - | chr8_3:44386645-44386664 | None:intergenic | 30.0% |
| !!! | GTATTTTGAAATAACCTGGA+AGG | - | chr8_3:44386647-44386666 | None:intergenic | 30.0% |
| CAAGTTCAAATTCTGAATAC+GGG | - | chr8_3:44386855-44386874 | None:intergenic | 30.0% | |
| GCAAGTTCAAATTCTGAATA+CGG | - | chr8_3:44386856-44386875 | None:intergenic | 30.0% | |
| ATCGTTATAAAGCTCAAAAG+AGG | + | chr8_3:44387034-44387053 | Msa1289910:intron | 30.0% | |
| TAACAACTAAGATGGCAATT+TGG | - | chr8_3:44387078-44387097 | None:intergenic | 30.0% | |
| TCATAACGTAACAACTAAGA+TGG | - | chr8_3:44387086-44387105 | None:intergenic | 30.0% | |
| CATATACACATCATATGTGA+GGG | - | chr8_3:44387167-44387186 | None:intergenic | 30.0% | |
| CTTACTACAATCAATTAGAC+TGG | + | chr8_3:44387436-44387455 | Msa1289910:intron | 30.0% | |
| ! | ATTAGACTGGCTATAATACA+TGG | + | chr8_3:44387449-44387468 | Msa1289910:intron | 30.0% |
| TTCCTTCACTATATGACTAT+TGG | + | chr8_3:44387747-44387766 | Msa1289910:intron | 30.0% | |
| ATGCAGTTCATTGTTGTAAA+TGG | - | chr8_3:44387824-44387843 | None:intergenic | 30.0% | |
| ! | AAGTATCGTGGTAGATTAAT+AGG | - | chr8_3:44387925-44387944 | None:intergenic | 30.0% |
| !! | AATTGCTTTTCTTGTATGGT+GGG | - | chr8_3:44388036-44388055 | None:intergenic | 30.0% |
| !! | AAATTGCTTTTCTTGTATGG+TGG | - | chr8_3:44388037-44388056 | None:intergenic | 30.0% |
| !! | CTGAAATTGCTTTTCTTGTA+TGG | - | chr8_3:44388040-44388059 | None:intergenic | 30.0% |
| AAGTGAAAGTAAGGAATCAA+AGG | - | chr8_3:44388163-44388182 | None:intergenic | 30.0% | |
| AGCTTCAATGATTGAAGTTT+AGG | - | chr8_3:44388665-44388684 | None:intergenic | 30.0% | |
| TTCAATCATTGAAGCTCAAA+GGG | + | chr8_3:44388669-44388688 | Msa1289910:CDS | 30.0% | |
| !!! | TTGGTTTTATACCAGAGAAT+TGG | + | chr8_3:44388711-44388730 | Msa1289910:CDS | 30.0% |
| !!! | TGGTTTTATACCAGAGAATT+GGG | + | chr8_3:44388712-44388731 | Msa1289910:CDS | 30.0% |
| ACTTCTCCTTAAATTCTTTC+AGG | - | chr8_3:44388802-44388821 | None:intergenic | 30.0% | |
| TTTCTAAGTTAGAAACAACC+GGG | - | chr8_3:44389024-44389043 | None:intergenic | 30.0% | |
| ! | AGAAATCTAATGTGATTTGG+TGG | + | chr8_3:44389039-44389058 | Msa1289910:three_prime_UTR | 30.0% |
| TGTATGAGAATGATGATTGA+TGG | + | chr8_3:44389076-44389095 | Msa1289910:three_prime_UTR | 30.0% | |
| GAGTGGGAAAGTTTCTTATT+TGG | - | chr8_3:44387492-44387511 | None:intergenic | 35.0% | |
| GTGATTCTTGAGGATATGAA+AGG | + | chr8_3:44386278-44386297 | Msa1289910:intron | 35.0% | |
| ATTCTTGAGGATATGAAAGG+TGG | + | chr8_3:44386281-44386300 | Msa1289910:intron | 35.0% | |
| CCGAGTATTATCTGTTTGAA+TGG | - | chr8_3:44386332-44386351 | None:intergenic | 35.0% | |
| CCTAATTAATGTTGAGCATG+TGG | - | chr8_3:44386461-44386480 | None:intergenic | 35.0% | |
| CCACATGCTCAACATTAATT+AGG | + | chr8_3:44386458-44386477 | Msa1289910:intron | 35.0% | |
| CTAGACGGAATTCAACAATA+CGG | + | chr8_3:44386749-44386768 | Msa1289910:intron | 35.0% | |
| ! | GTGAGCATTTTACTCATAAG+CGG | - | chr8_3:44386814-44386833 | None:intergenic | 35.0% |
| TCCTACATCTTTGAGCTATT+AGG | + | chr8_3:44387117-44387136 | Msa1289910:intron | 35.0% | |
| ACCTAATAGCTCAAAGATGT+AGG | - | chr8_3:44387121-44387140 | None:intergenic | 35.0% | |
| TAGTTATCTGTGAGCATCTA+TGG | + | chr8_3:44387140-44387159 | Msa1289910:intron | 35.0% | |
| CCATATACACATCATATGTG+AGG | - | chr8_3:44387168-44387187 | None:intergenic | 35.0% | |
| CCTCACATATGATGTGTATA+TGG | + | chr8_3:44387165-44387184 | Msa1289910:intron | 35.0% | |
| ACTGGCTATAATACATGGAA+GGG | + | chr8_3:44387454-44387473 | Msa1289910:intron | 35.0% | |
| GAGTGGGAAAGTTTCTTATT+TGG | + | chr8_3:44387492-44387511 | Msa1289910:intron | 35.0% | |
| AGATATGATTTCTACAGGTG+AGG | + | chr8_3:44387531-44387550 | Msa1289910:intron | 35.0% | |
| ! | TAGATTACCCTCTCTTGTTT+AGG | + | chr8_3:44387556-44387575 | Msa1289910:intron | 35.0% |
| ! | AGATTACCCTCTCTTGTTTA+GGG | + | chr8_3:44387557-44387576 | Msa1289910:intron | 35.0% |
| ATTATCCCCTAAACAAGAGA+GGG | - | chr8_3:44387566-44387585 | None:intergenic | 35.0% | |
| AATTATCCCCTAAACAAGAG+AGG | - | chr8_3:44387567-44387586 | None:intergenic | 35.0% | |
| CTCCAATAGTCATATAGTGA+AGG | - | chr8_3:44387752-44387771 | None:intergenic | 35.0% | |
| TCTTGGAACAAGAGAAAGAA+AGG | - | chr8_3:44388008-44388027 | None:intergenic | 35.0% | |
| ! | CTTTGCTTTGCATCTTTTGT+GGG | - | chr8_3:44388124-44388143 | None:intergenic | 35.0% |
| ! | TCTTTGCTTTGCATCTTTTG+TGG | - | chr8_3:44388125-44388144 | None:intergenic | 35.0% |
| TAGTGAGATGAAGATGATGA+TGG | - | chr8_3:44388205-44388224 | None:intergenic | 35.0% | |
| AAATCACGTCTCTGTCTTTA+GGG | - | chr8_3:44388361-44388380 | None:intergenic | 35.0% | |
| CTTCAATCATTGAAGCTCAA+AGG | + | chr8_3:44388668-44388687 | Msa1289910:CDS | 35.0% | |
| !! | GGTTTTATACCAGAGAATTG+GGG | + | chr8_3:44388713-44388732 | Msa1289910:CDS | 35.0% |
| ACAGAAGCAAGTTGTATTAG+AGG | + | chr8_3:44388878-44388897 | Msa1289910:three_prime_UTR | 35.0% | |
| ATGAGAATGATGATTGATGG+TGG | + | chr8_3:44389079-44389098 | Msa1289910:three_prime_UTR | 35.0% | |
| ! | GTTTTCAAAGAGACGAGAGT+GGG | - | chr8_3:44386237-44386256 | None:intergenic | 40.0% |
| ! | AGTTTTCAAAGAGACGAGAG+TGG | - | chr8_3:44386238-44386257 | None:intergenic | 40.0% |
| CTCAAAGAAGGCTCAATCTT+CGG | + | chr8_3:44386509-44386528 | Msa1289910:CDS | 40.0% | |
| TCACAGTGAGAGACATGATA+AGG | - | chr8_3:44386542-44386561 | None:intergenic | 40.0% | |
| CGTATTGTTGAATTCCGTCT+AGG | - | chr8_3:44386751-44386770 | None:intergenic | 40.0% | |
| GAATTCAACAATACGGCCTT+TGG | + | chr8_3:44386756-44386775 | Msa1289910:intron | 40.0% | |
| ACGTTTCAGAGAGAATCCAA+AGG | - | chr8_3:44386775-44386794 | None:intergenic | 40.0% | |
| ! | GCATTTTACTCATAAGCGGT+AGG | - | chr8_3:44386810-44386829 | None:intergenic | 40.0% |
| AAGCTCAAAAGAGGTCATTG+AGG | + | chr8_3:44387043-44387062 | Msa1289910:intron | 40.0% | |
| AGCTCAAAAGAGGTCATTGA+GGG | + | chr8_3:44387044-44387063 | Msa1289910:intron | 40.0% | |
| ! | GACTGGCTATAATACATGGA+AGG | + | chr8_3:44387453-44387472 | Msa1289910:intron | 40.0% |
| ! | GATTACCCTCTCTTGTTTAG+GGG | + | chr8_3:44387558-44387577 | Msa1289910:intron | 40.0% |
| !! | GAGAAAGGAACAAAGTATCG+TGG | - | chr8_3:44387937-44387956 | None:intergenic | 40.0% |
| GTGTGACATGAAGAAGAGAA+AGG | - | chr8_3:44387952-44387971 | None:intergenic | 40.0% | |
| !! | TTGTATGGTGGGTTTGTTCT+TGG | - | chr8_3:44388025-44388044 | None:intergenic | 40.0% |
| ! | TGTGGGTTTGGTATTGTTCT+TGG | - | chr8_3:44388107-44388126 | None:intergenic | 40.0% |
| ! | CTTTGCATCTTTTGTGGGTT+TGG | - | chr8_3:44388119-44388138 | None:intergenic | 40.0% |
| CTTTCAGCAATGCAGAATGA+AGG | + | chr8_3:44388269-44388288 | Msa1289910:intron | 40.0% | |
| GAAATCACGTCTCTGTCTTT+AGG | - | chr8_3:44388362-44388381 | None:intergenic | 40.0% | |
| CAGAGACGTGATTTCTTCTA+AGG | + | chr8_3:44388367-44388386 | Msa1289910:CDS | 40.0% | |
| AGTTAGTTACCTGAGAAAGC+AGG | - | chr8_3:44388478-44388497 | None:intergenic | 40.0% | |
| CATCTAACAAACAGCACGTA+AGG | + | chr8_3:44388550-44388569 | Msa1289910:intron | 40.0% | |
| AACAAACAGCACGTAAGGAA+TGG | + | chr8_3:44388555-44388574 | Msa1289910:intron | 40.0% | |
| GGGATATGGATTCAGATACA+CGG | + | chr8_3:44388579-44388598 | Msa1289910:CDS | 40.0% | |
| !!! | AACCGTTTCTGGAGTTTTTC+CGG | - | chr8_3:44388641-44388660 | None:intergenic | 40.0% |
| GAAGTTTAGGAAACCGTTTC+TGG | - | chr8_3:44388652-44388671 | None:intergenic | 40.0% | |
| TTTATACCAGAGAATTGGGG+AGG | + | chr8_3:44388716-44388735 | Msa1289910:CDS | 40.0% | |
| !! | TGATTTGGTGGATAGTGAGA+GGG | + | chr8_3:44389051-44389070 | Msa1289910:three_prime_UTR | 40.0% |
| !! | ATGTCTATGGTGGACCAACA+TGG | - | chr8_3:44385887-44385906 | None:intergenic | 45.0% |
| AAAGAAGGCTCAATCTTCGG+TGG | + | chr8_3:44386512-44386531 | Msa1289910:CDS | 45.0% | |
| GGACTGTAGCAATGAGTTAC+CGG | - | chr8_3:44386624-44386643 | None:intergenic | 45.0% | |
| TCAAATTCTGAATACGGGCG+TGG | - | chr8_3:44386850-44386869 | None:intergenic | 45.0% | |
| CCTGTAGTGTCTCATGAAAC+GGG | - | chr8_3:44386884-44386903 | None:intergenic | 45.0% | |
| GCCTGTAGTGTCTCATGAAA+CGG | - | chr8_3:44386885-44386904 | None:intergenic | 45.0% | |
| AGACACTACAGGCTGTTCTA+CGG | + | chr8_3:44386892-44386911 | Msa1289910:intron | 45.0% | |
| GTTGAGAATCCACCTATCTC+TGG | - | chr8_3:44386919-44386938 | None:intergenic | 45.0% | |
| GCTCAAAAGAGGTCATTGAG+GGG | + | chr8_3:44387045-44387064 | Msa1289910:intron | 45.0% | |
| GCAGTTAGAGAGAAGAGAGT+GGG | + | chr8_3:44387476-44387495 | Msa1289910:intron | 45.0% | |
| !! | TGAAGATGATGATGGCAGCA+GGG | - | chr8_3:44388197-44388216 | None:intergenic | 45.0% |
| !! | ATGAAGATGATGATGGCAGC+AGG | - | chr8_3:44388198-44388217 | None:intergenic | 45.0% |
| !! | TGATGAAGCTCTGAAACGCA+TGG | + | chr8_3:44388319-44388338 | Msa1289910:CDS | 45.0% |
| ACTCAGAAACCTGCTTTCTC+AGG | + | chr8_3:44388466-44388485 | Msa1289910:intron | 45.0% | |
| AAACAGCACGTAAGGAATGG+AGG | + | chr8_3:44388558-44388577 | Msa1289910:intron | 45.0% | |
| AACAGCACGTAAGGAATGGA+GGG | + | chr8_3:44388559-44388578 | Msa1289910:intron | 45.0% | |
| ACGTAAGGAATGGAGGGATA+TGG | + | chr8_3:44388565-44388584 | Msa1289910:CDS | 45.0% | |
| TCTAATTTACGCCTCCACTC+CGG | + | chr8_3:44388619-44388638 | Msa1289910:CDS | 45.0% | |
| !!! | TTTCTGGAGTTTTTCCGGAG+TGG | - | chr8_3:44388636-44388655 | None:intergenic | 45.0% |
| CTCCGGAAAAACTCCAGAAA+CGG | + | chr8_3:44388636-44388655 | Msa1289910:CDS | 45.0% | |
| TGAAGCTCAAAGGGAAACCT+AGG | + | chr8_3:44388678-44388697 | Msa1289910:CDS | 45.0% | |
| GAAGCTCAAAGGGAAACCTA+GGG | + | chr8_3:44388679-44388698 | Msa1289910:CDS | 45.0% | |
| AAACCTAGGGCAGCAAAGTT+TGG | + | chr8_3:44388692-44388711 | Msa1289910:CDS | 45.0% | |
| AAACCAAACTTTGCTGCCCT+AGG | - | chr8_3:44388698-44388717 | None:intergenic | 45.0% | |
| GACACAAATATGTGCTTGCC+CGG | + | chr8_3:44389003-44389022 | Msa1289910:three_prime_UTR | 45.0% | |
| !! | GTGATTTGGTGGATAGTGAG+AGG | + | chr8_3:44389050-44389069 | Msa1289910:three_prime_UTR | 45.0% |
| TGGTGTACCACCTACCATGT+TGG | + | chr8_3:44385870-44385889 | Msa1289910:intron | 50.0% | |
| !! | CTATGGTGGACCAACATGGT+AGG | - | chr8_3:44385883-44385902 | None:intergenic | 50.0% |
| TGTCTCTCACTGTGAGTGAG+TGG | + | chr8_3:44386547-44386566 | Msa1289910:CDS | 50.0% | |
| GAGTTACCGGTGGATGATCT+TGG | - | chr8_3:44386611-44386630 | None:intergenic | 50.0% | |
| CTGTAGCAATGAGTTACCGG+TGG | - | chr8_3:44386621-44386640 | None:intergenic | 50.0% | |
| !! | CGAAACAATAACGGGCGAAG+TGG | - | chr8_3:44386712-44386731 | None:intergenic | 50.0% |
| CCCGTTTCATGAGACACTAC+AGG | + | chr8_3:44386881-44386900 | Msa1289910:intron | 50.0% | |
| GACACTACAGGCTGTTCTAC+GGG | + | chr8_3:44386893-44386912 | Msa1289910:intron | 50.0% | |
| GGCAGTTAGAGAGAAGAGAG+TGG | + | chr8_3:44387475-44387494 | Msa1289910:intron | 50.0% | |
| !! | GAAGATGATGATGGCAGCAG+GGG | - | chr8_3:44388196-44388215 | None:intergenic | 50.0% |
| !! | TGAAGCTCTGAAACGCATGG+TGG | + | chr8_3:44388322-44388341 | Msa1289910:CDS | 50.0% |
| ! | GGAGTGGAGGCGTAAATTAG+AGG | - | chr8_3:44388620-44388639 | None:intergenic | 50.0% |
| GCATAACCTCCCCAATTCTC+TGG | - | chr8_3:44388725-44388744 | None:intergenic | 50.0% | |
| GTTGCTGATGAAGAGAGAGC+TGG | + | chr8_3:44388965-44388984 | Msa1289910:three_prime_UTR | 50.0% | |
| TGATGAAGAGAGAGCTGGTG+AGG | + | chr8_3:44388970-44388989 | Msa1289910:three_prime_UTR | 50.0% | |
| ! | TGGTGGACCAACATGGTAGG+TGG | - | chr8_3:44385880-44385899 | None:intergenic | 55.0% |
| CATTGCTACAGTCCCCTTCC+AGG | + | chr8_3:44386630-44386649 | Msa1289910:CDS | 55.0% | |
| AATACGGGCGTGGTCTACGA+CGG | - | chr8_3:44386840-44386859 | None:intergenic | 55.0% | |
| CTGTTCTACGGGCCAGAGAT+AGG | + | chr8_3:44386904-44386923 | Msa1289910:intron | 55.0% | |
| TTCTACGGGCCAGAGATAGG+TGG | + | chr8_3:44386907-44386926 | Msa1289910:intron | 55.0% | |
| ! | CTGGAGTTTTTCCGGAGTGG+AGG | - | chr8_3:44388633-44388652 | None:intergenic | 55.0% |
| GGGGAGGTTATGCTTCTCCA+TGG | + | chr8_3:44388732-44388751 | Msa1289910:CDS | 55.0% | |
| GAGCTGGTGAGGTGTGTATG+TGG | + | chr8_3:44388981-44389000 | Msa1289910:three_prime_UTR | 55.0% | |
| GGACGGCCAAGATCATCCAC+CGG | + | chr8_3:44386602-44386621 | Msa1289910:CDS | 60.0% | |
| CGGGCGTGGTCTACGACGGT+AGG | - | chr8_3:44386836-44386855 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 44385686 | 44389125 | 44385686 | ID=Msa1289910;Name=Msa1289910 |
| chr8_3 | mRNA | 44385686 | 44389125 | 44385686 | ID=Msa1289910-mRNA-1;Parent=Msa1289910;Name=Msa1289910-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.25|0.2|0.6|1|1|5|251|210 |
| chr8_3 | exon | 44385686 | 44385733 | 44385686 | ID=Msa1289910-mRNA-1:exon:12198;Parent=Msa1289910-mRNA-1 |
| chr8_3 | exon | 44386507 | 44386651 | 44386507 | ID=Msa1289910-mRNA-1:exon:12199;Parent=Msa1289910-mRNA-1 |
| chr8_3 | exon | 44388276 | 44388388 | 44388276 | ID=Msa1289910-mRNA-1:exon:12200;Parent=Msa1289910-mRNA-1 |
| chr8_3 | exon | 44388472 | 44388487 | 44388472 | ID=Msa1289910-mRNA-1:exon:12201;Parent=Msa1289910-mRNA-1 |
| chr8_3 | exon | 44388564 | 44389125 | 44388564 | ID=Msa1289910-mRNA-1:exon:12202;Parent=Msa1289910-mRNA-1 |
| chr8_3 | CDS | 44385686 | 44385733 | 44385686 | ID=Msa1289910-mRNA-1:cds;Parent=Msa1289910-mRNA-1 |
| chr8_3 | CDS | 44386507 | 44386651 | 44386507 | ID=Msa1289910-mRNA-1:cds;Parent=Msa1289910-mRNA-1 |
| chr8_3 | CDS | 44388276 | 44388388 | 44388276 | ID=Msa1289910-mRNA-1:cds;Parent=Msa1289910-mRNA-1 |
| chr8_3 | CDS | 44388472 | 44388487 | 44388472 | ID=Msa1289910-mRNA-1:cds;Parent=Msa1289910-mRNA-1 |
| chr8_3 | CDS | 44388564 | 44388874 | 44388564 | ID=Msa1289910-mRNA-1:cds;Parent=Msa1289910-mRNA-1 |
| chr8_3 | three_prime_UTR | 44388875 | 44389125 | 44388875 | ID=Msa1289910-mRNA-1:three_prime_utr;Parent=Msa1289910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
