AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1291040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291040 MtrunA17_Chr4g0059961 99.155 828 7 0 1 828 131 958 0.0 1686
Msa1291040 MtrunA17_Chr6g0452721 90.644 823 77 0 6 828 134 956 0.0 1562
Msa1291040 MtrunA17_Chr4g0072131 81.311 824 147 3 6 828 135 952 0.0 1400
Msa1291040 MtrunA17_Chr1g0148031 81.675 824 146 2 6 828 132 951 0.0 1399
Msa1291040 MtrunA17_Chr3g0138931 80.340 824 157 2 6 828 132 951 0.0 1387
Msa1291040 MtrunA17_Chr2g0333721 80.218 824 158 2 6 828 130 949 0.0 1386
Msa1291040 MtrunA17_Chr2g0298031 80.024 826 158 3 6 828 137 958 0.0 1376
Msa1291040 MtrunA17_Chr1g0147981 78.493 823 173 1 6 828 149 967 0.0 1353
Msa1291040 MtrunA17_Chr8g0335291 79.227 828 166 2 6 828 140 966 0.0 1345
Msa1291040 MtrunA17_Chr4g0065481 78.493 823 170 2 6 828 133 948 0.0 1335
Msa1291040 MtrunA17_Chr8g0365021 76.623 847 169 3 6 828 202 1043 0.0 1333
Msa1291040 MtrunA17_Chr2g0304941 79.058 764 156 1 6 769 133 892 0.0 1256
Msa1291040 MtrunA17_Chr7g0276551 73.986 715 178 3 114 828 6 712 0.0 1105
Msa1291040 MtrunA17_Chr7g0276541 72.951 122 21 1 6 115 139 260 1.73e-50 179
Msa1291040 MtrunA17_Chr4g0054021 26.271 590 366 16 9 534 165 749 3.27e-47 181
Msa1291040 MtrunA17_Chr7g0263361 26.172 768 379 24 5 608 149 892 1.18e-46 180
Msa1291040 MtrunA17_Chr8g0381711 25.043 575 370 14 20 546 142 703 2.20e-45 176
Msa1291040 MtrunA17_Chr5g0401211 27.487 593 349 18 9 530 240 822 3.67e-45 176
Msa1291040 MtrunA17_Chr4g0020551 25.373 603 352 18 10 530 171 757 2.85e-44 172
Msa1291040 MtrunA17_Chr8g0382071 24.916 598 361 17 9 530 237 822 2.68e-43 170
Msa1291040 MtrunA17_Chr1g0173111 25.212 591 364 17 10 530 237 819 2.96e-42 166
Msa1291040 MtrunA17_Chr7g0260401 24.960 625 365 19 7 537 245 859 1.29e-40 161
Msa1291040 MtrunA17_Chr8g0355421 24.708 599 374 16 9 537 230 821 2.58e-40 160
Msa1291040 MtrunA17_Chr2g0298871 25.329 608 357 17 9 530 278 874 3.27e-40 160
Msa1291040 MtrunA17_Chr3g0134771 25.254 590 367 16 9 530 241 824 1.93e-39 157
Msa1291040 MtrunA17_Chr6g0456201 24.194 620 365 20 10 537 220 826 2.17e-38 154
Msa1291040 MtrunA17_Chr4g0002331 24.503 604 367 17 9 530 291 887 1.09e-37 152
Msa1291040 MtrunA17_Chr3g0134951 27.071 495 314 17 282 730 493 986 3.30e-34 141
Msa1291040 MtrunA17_Chr3g0134951 29.832 238 139 8 8 219 126 361 8.40e-19 92.0
Msa1291040 MtrunA17_Chr1g0181471 81.967 61 11 0 328 388 29 89 2.53e-28 109
Msa1291040 MtrunA17_Chr5g0413881 63.636 77 27 1 264 339 6 82 1.15e-25 103
Msa1291040 MtrunA17_Chr8g0346461 32.353 272 171 7 355 613 619 890 3.33e-24 109
Msa1291040 MtrunA17_Chr8g0346461 28.364 275 158 6 9 248 138 408 1.83e-22 103
Msa1291040 MtrunA17_Chr8g0340261 27.365 296 171 11 276 537 93 378 1.02e-22 103
Msa1291040 MtrunA17_Chr5g0423831 60.811 74 29 0 264 337 55 128 1.10e-22 97.4
Msa1291040 MtrunA17_Chr2g0297051 22.704 577 328 16 1 530 461 966 3.17e-22 102
Msa1291040 MtrunA17_Chr6g0474841 58.108 74 31 0 264 337 55 128 2.21e-21 94.0
Msa1291040 MtrunA17_Chr8g0339181 24.057 557 339 18 18 551 431 926 3.53e-20 96.3
Msa1291040 MtrunA17_Chr4g0052521 21.980 596 357 18 1 551 424 956 4.23e-20 96.3
Msa1291040 MtrunA17_Chr8g0374391 29.353 201 107 3 354 551 34 202 1.33e-17 83.2
Msa1291040 MtrunA17_Chr8g0374331 28.856 201 108 3 354 551 41 209 1.86e-17 82.8
Msa1291040 MtrunA17_Chr3g0136331 23.339 557 326 17 27 547 363 854 3.45e-17 86.7
Msa1291040 MtrunA17_Chr4g0071991 22.551 541 343 17 29 559 219 693 5.93e-17 85.9
Msa1291040 MtrunA17_Chr2g0334231 29.185 233 139 5 9 215 272 504 7.87e-16 81.3
Msa1291040 MtrunA17_Chr2g0297871 22.500 560 328 19 29 564 62 539 2.77e-15 80.1
Msa1291040 MtrunA17_Chr5g0397621 28.649 185 94 3 357 541 695 841 2.21e-14 77.4
Msa1291040 MtrunA17_Chr8g0340271 23.707 232 146 4 10 212 218 447 3.52e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291040 AT3G47950.1 93.439 823 54 0 6 828 138 960 0.0 1596
Msa1291040 AT3G47950.2 93.439 823 54 0 6 828 138 960 0.0 1596
Msa1291040 AT5G62670.1 92.831 823 59 0 6 828 134 956 0.0 1585
Msa1291040 AT1G80660.2 80.217 829 159 2 1 828 1 825 0.0 1380
Msa1291040 AT1G80660.1 80.218 824 158 2 6 828 135 954 0.0 1374
Msa1291040 AT3G42640.1 79.708 823 160 3 6 828 133 948 0.0 1369
Msa1291040 AT4G30190.1 80.461 824 155 3 6 828 130 948 0.0 1362
Msa1291040 AT5G57350.4 78.935 826 164 4 6 828 131 949 0.0 1355
Msa1291040 AT5G57350.2 78.935 826 164 4 6 828 131 949 0.0 1355
Msa1291040 AT5G57350.1 78.935 826 164 4 6 828 131 949 0.0 1355
Msa1291040 AT2G24520.3 78.883 824 169 2 6 828 112 931 0.0 1355
Msa1291040 AT2G24520.1 78.883 824 169 2 6 828 112 931 0.0 1355
Msa1291040 AT2G18960.1 79.369 824 165 2 6 828 130 949 0.0 1355
Msa1291040 AT2G24520.2 78.883 824 169 2 6 828 175 994 0.0 1354
Msa1291040 AT2G18960.3 79.369 824 165 2 6 828 66 885 0.0 1353
Msa1291040 AT2G18960.2 79.369 824 165 2 6 828 66 885 0.0 1353
Msa1291040 AT2G07560.1 79.101 823 166 3 6 828 133 949 0.0 1353
Msa1291040 AT4G30190.2 77.363 857 155 4 6 828 130 981 0.0 1343
Msa1291040 AT1G80660.4 80.252 795 152 2 6 799 135 925 0.0 1327
Msa1291040 AT1G80660.3 80.252 795 152 2 6 799 135 925 0.0 1327
Msa1291040 AT3G60330.4 74.910 833 195 4 6 828 133 961 0.0 1296
Msa1291040 AT3G60330.3 74.910 833 195 4 6 828 133 961 0.0 1296
Msa1291040 AT3G60330.2 74.670 833 197 4 6 828 133 961 0.0 1293
Msa1291040 AT3G60330.1 74.670 833 197 4 6 828 133 961 0.0 1293
Msa1291040 AT1G17260.1 72.019 822 217 3 7 828 139 947 0.0 1224
Msa1291040 AT2G24520.4 78.613 692 143 2 138 828 1 688 0.0 1123
Msa1291040 AT5G57350.3 77.810 694 144 4 138 828 1 687 0.0 1115
Msa1291040 AT4G11730.1 66.276 341 109 3 1 338 124 461 1.64e-150 462
Msa1291040 AT4G11730.1 65.979 291 93 3 443 732 480 765 3.55e-117 375
Msa1291040 AT4G00900.2 26.728 767 386 27 8 613 135 886 5.05e-52 197
Msa1291040 AT4G00900.1 26.728 767 386 27 8 613 135 886 5.05e-52 197
Msa1291040 AT2G22950.1 26.968 597 348 19 9 530 240 823 3.17e-45 176
Msa1291040 AT3G22910.1 25.748 602 373 17 7 537 224 822 2.28e-44 173
Msa1291040 AT5G57110.1 26.966 623 360 18 9 548 259 869 2.57e-44 173
Msa1291040 AT5G57110.3 26.966 623 360 18 9 548 259 869 2.57e-44 173
Msa1291040 AT5G57110.2 26.966 623 360 18 9 548 259 869 2.57e-44 173
Msa1291040 AT4G37640.1 26.500 600 347 20 9 530 239 822 4.97e-44 172
Msa1291040 AT1G27770.4 25.207 603 375 16 9 541 241 837 7.10e-43 169
Msa1291040 AT1G27770.1 25.207 603 375 16 9 541 241 837 7.10e-43 169
Msa1291040 AT1G27770.3 25.381 591 366 15 9 530 178 762 8.95e-43 168
Msa1291040 AT4G29900.1 25.944 609 357 16 7 530 257 856 5.35e-42 166
Msa1291040 AT4G29900.2 25.944 609 357 16 7 530 257 856 5.35e-42 166
Msa1291040 AT3G57330.1 24.320 588 369 14 9 530 236 813 8.17e-40 159
Msa1291040 AT3G57330.2 24.320 588 369 14 9 530 181 758 9.68e-40 159
Msa1291040 AT2G41560.1 24.746 590 367 18 9 530 236 816 6.58e-39 156
Msa1291040 AT2G41560.2 24.746 590 367 18 9 530 134 714 7.98e-39 156
Msa1291040 AT2G41560.3 24.746 590 367 18 9 530 134 714 7.98e-39 156
Msa1291040 AT2G41560.4 24.746 590 367 18 9 530 134 714 7.98e-39 156
Msa1291040 AT1G10130.1 27.255 521 320 17 269 737 482 995 3.87e-38 154
Msa1291040 AT1G10130.1 29.536 237 141 7 8 219 126 361 2.85e-18 90.5
Msa1291040 AT3G21180.1 24.342 608 363 16 9 530 273 869 3.26e-35 145
Msa1291040 AT3G63380.1 23.810 609 375 17 7 537 229 826 3.18e-34 141
Msa1291040 AT1G07670.2 29.008 393 225 11 269 613 504 890 1.08e-27 120
Msa1291040 AT1G07670.2 28.516 256 131 8 7 219 151 397 5.81e-21 99.4
Msa1291040 AT1G07670.1 29.008 393 225 11 269 613 504 890 1.08e-27 120
Msa1291040 AT1G07670.1 28.516 256 131 8 7 219 151 397 5.81e-21 99.4
Msa1291040 AT1G07810.1 28.645 391 229 12 269 613 504 890 7.81e-27 118
Msa1291040 AT1G07810.1 28.516 256 131 8 7 219 151 397 5.03e-21 99.8
Msa1291040 AT5G44790.1 23.468 571 335 15 18 550 458 964 2.90e-25 113
Msa1291040 AT5G21930.2 24.275 552 328 19 27 547 354 846 2.66e-22 103
Msa1291040 AT5G21930.1 24.275 552 328 19 27 547 354 846 2.66e-22 103
Msa1291040 AT1G27770.2 25.558 403 236 11 9 348 241 642 7.81e-22 102
Msa1291040 AT5G21930.4 25.000 504 295 17 27 502 354 802 2.40e-19 94.0
Msa1291040 AT1G63440.1 29.851 201 106 4 354 551 786 954 3.02e-18 90.5
Msa1291040 AT5G21930.3 23.956 551 308 20 27 547 354 823 3.85e-18 90.1
Msa1291040 AT5G53010.1 22.260 584 382 16 9 530 285 858 5.20e-17 86.7

Find 206 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATATGAAAATACTGTAAA+TGG 0.185380 8_3:-46276998 Msa1291040:three_prime_UTR
GGAACTCCATGGCAATTTAT+TGG 0.221765 8_3:-46280314 Msa1291040:CDS
TGATGACGGTTATATTCTTT+TGG 0.223542 8_3:-46278613 Msa1291040:CDS
AACCTCCTTGTGCTTCTTAT+TGG 0.248402 8_3:-46281394 Msa1291040:CDS
ACAGCTTGGCTTCATGTTGC+TGG 0.269583 8_3:-46278917 Msa1291040:intron
TCTTATCGTGTGCCAGATTT+AGG 0.271365 8_3:+46280551 None:intergenic
CCTGGTGATGGTGTGTATTC+TGG 0.287410 8_3:-46281755 Msa1291040:CDS
TCCGATAGCTTCCAGCTATC+TGG 0.298656 8_3:+46278677 None:intergenic
TCATGTTGCTGGCTTTGATA+TGG 0.302250 8_3:-46278906 Msa1291040:CDS
GGGTTTGCTGGTGTATTTCC+TGG 0.303601 8_3:-46279570 Msa1291040:intron
TTCAATCTCTCCTTGTTTGC+AGG 0.312423 8_3:+46281727 None:intergenic
AAATGTTAACAAAAGTTAAA+AGG 0.322875 8_3:+46276922 None:intergenic
GCAATAATAAGAACCATAAA+AGG 0.325700 8_3:+46278868 None:intergenic
ATATCAAAACTTACCTCCTT+TGG 0.329983 8_3:+46280893 None:intergenic
GTGAGCAGCTTTACCGAAAA+AGG 0.334538 8_3:+46281676 None:intergenic
TAGTGCCCTCCGTATGGTTT+CGG 0.335001 8_3:+46280253 None:intergenic
ATATAGGTCTTGACTGCAAT+TGG 0.337367 8_3:-46281511 Msa1291040:intron
ATAGTACTTTCAGCAACATT+AGG 0.339208 8_3:+46276969 None:intergenic
AATTTAAACACCTTAGCTTT+TGG 0.344171 8_3:+46282202 None:intergenic
TATCCTTCATCTGCTTTACT+TGG 0.345524 8_3:-46279654 Msa1291040:CDS
TGCTTTGAGTGGGAGAGCTT+GGG 0.354705 8_3:-46277894 Msa1291040:CDS
TCATGACAATTTCAAAAGAT+AGG 0.361314 8_3:-46278718 Msa1291040:CDS
GGGGTTGGGCTGGTGTTATA+TGG 0.367612 8_3:-46277973 Msa1291040:CDS
GCAGATGCACGGCTTCTAGA+AGG 0.369984 8_3:-46281953 Msa1291040:CDS
ATAAATTGCCATGGAGTTCC+AGG 0.371301 8_3:+46280317 None:intergenic
GTGTTGCTTATTACCTGTTC+TGG 0.371907 8_3:+46280651 None:intergenic
AAATGGCTGAGGAAGCTAAA+AGG 0.376336 8_3:-46277630 Msa1291040:CDS
TTCACAAGGCAAAAGGACTT+TGG 0.378599 8_3:-46277763 Msa1291040:CDS
TAAGAAACAAACCATCGTTT+AGG 0.381147 8_3:+46278842 None:intergenic
GGCAGCAACCAGCAATAAAC+CGG 0.383367 8_3:+46278157 None:intergenic
GTTAATGTCAAAATGATTAC+AGG 0.384024 8_3:-46280221 Msa1291040:intron
AAAACAGTGGGCATGGCAAT+TGG 0.386168 8_3:+46281364 None:intergenic
AAGCAAAGGTGCACCAGAAC+AGG 0.391446 8_3:-46280664 Msa1291040:intron
TCACAAGGCAAAAGGACTTT+GGG 0.392851 8_3:-46277762 Msa1291040:CDS
ATCAGCCAGCATCCCAACTA+TGG 0.398865 8_3:+46280916 None:intergenic
TGAGCGTCCCGGTTTATTGC+TGG 0.399904 8_3:-46278165 Msa1291040:CDS
ACAAGGAGGTTATCGATTCC+AGG 0.402485 8_3:+46281406 None:intergenic
ATGCTTTGAGTGGGAGAGCT+TGG 0.402802 8_3:-46277895 Msa1291040:CDS
TGATGCACCGGCTCTCAAAA+AGG 0.402809 8_3:-46279358 Msa1291040:CDS
GGGATAGGCTGGGGTTGGGC+TGG 0.403866 8_3:-46277983 Msa1291040:CDS
TGATGGCGGCTCGAGCTTCA+AGG 0.404540 8_3:-46280967 Msa1291040:CDS
CTCCTTGTGCTTCTTATTGG+AGG 0.409014 8_3:-46281391 Msa1291040:CDS
GGACTTTCTTTCCTTCCATC+AGG 0.410002 8_3:+46280338 None:intergenic
CGATAGCGTCGATGTTGAAT+AGG 0.412088 8_3:+46281430 None:intergenic
TCTAGAAGCCGTGCATCTGC+TGG 0.414572 8_3:+46281956 None:intergenic
TGATTGCAGTTTATGCTAGC+TGG 0.421920 8_3:-46278024 Msa1291040:CDS
GCAATAGATACTGCCATAGT+TGG 0.423062 8_3:-46280929 Msa1291040:CDS
CGCTTATCCGTCGGATTGAA+AGG 0.423989 8_3:+46280732 None:intergenic
GAGAAAGCTGATGGGTTTGC+TGG 0.427911 8_3:-46279582 Msa1291040:CDS
GATGCCGCGATCCTGGTTCC+TGG 0.430022 8_3:-46282013 Msa1291040:CDS
TTGTGAAACGGTTGCAAGCT+AGG 0.433247 8_3:-46279416 Msa1291040:CDS
CTAGCTATCGGAAAGGAAAC+AGG 0.442777 8_3:-46279705 Msa1291040:CDS
AACAGGTCGCCGCTTGGGAA+TGG 0.442986 8_3:-46279688 Msa1291040:CDS
AAGCTAGGAAACACATTTGT+GGG 0.443892 8_3:-46279401 Msa1291040:CDS
CGAAGGGATAGGCTGGGGTT+GGG 0.450379 8_3:-46277987 Msa1291040:CDS
TACAAGTTGAGCGACGATAA+AGG 0.451146 8_3:+46278136 None:intergenic
CATGCCTGCCATCTCTTCAA+TGG 0.454661 8_3:+46281189 None:intergenic
TTCTCAATTAGATCATCAAC+AGG 0.454688 8_3:+46279600 None:intergenic
TACTGCCATAGTTGGGATGC+TGG 0.461425 8_3:-46280921 Msa1291040:CDS
TGTTGTGCTTGGTAGTTACT+TGG 0.461679 8_3:-46278639 Msa1291040:CDS
CTCAATTACAATTCGTATTG+TGG 0.463655 8_3:-46279055 Msa1291040:intron
TCAAGTGAGCACTATTAGTC+AGG 0.466500 8_3:-46278228 Msa1291040:CDS
TGATTGTTAGATCCTAAATC+TGG 0.467308 8_3:-46280563 Msa1291040:intron
TGTCACTGAACTTAATCAAA+TGG 0.469917 8_3:-46277647 Msa1291040:CDS
TGAGCAAGATGCCGCGATCC+TGG 0.470016 8_3:-46282020 Msa1291040:CDS
AGGAACAAAGGGAACTTCAA+TGG 0.470848 8_3:-46277738 Msa1291040:CDS
ACAGGTCGCCGCTTGGGAAT+GGG 0.471058 8_3:-46279687 Msa1291040:CDS
AGGTTCTGTCAAAACAATAT+CGG 0.471162 8_3:+46279284 None:intergenic
AAGGAAACAGGTCGCCGCTT+GGG 0.472026 8_3:-46279693 Msa1291040:CDS
GGATCTTGTCATTGAGCAAA+GGG 0.472581 8_3:-46277873 Msa1291040:intron
TCGAAGGGATAGGCTGGGGT+TGG 0.473402 8_3:-46277988 Msa1291040:CDS
CTGCAATCGAAGGGATAGGC+TGG 0.474285 8_3:-46277994 Msa1291040:CDS
CATCACCTCTTCCAGATAGC+TGG 0.478312 8_3:-46278688 Msa1291040:CDS
GATTGCTTTCACAAGGCAAA+AGG 0.480592 8_3:-46277770 Msa1291040:CDS
CCGGAGGTTGTAATCCATGC+AGG 0.486367 8_3:+46277698 None:intergenic
TCAAGTTGGTCACTTCCAAC+AGG 0.487186 8_3:-46281636 Msa1291040:intron
GGAACAAAGGGAACTTCAAT+GGG 0.489859 8_3:-46277737 Msa1291040:CDS
ATACAAAACAGATTTCTTCC+CGG 0.492248 8_3:-46278585 Msa1291040:intron
CAGCTATCTGGAAGAGGTGA+TGG 0.496381 8_3:+46278689 None:intergenic
CATGACAATTTCAAAAGATA+GGG 0.500287 8_3:-46278717 Msa1291040:CDS
GTTTCGGCACTATCATGTCT+TGG 0.504008 8_3:+46280269 None:intergenic
TGGAGCTTTGCTGCAATCGA+AGG 0.505212 8_3:-46278004 Msa1291040:CDS
CAACATCGACGCTATCGTCC+TGG 0.505323 8_3:-46281424 Msa1291040:CDS
TGGTCATATGTTGAGCGTCC+CGG 0.505369 8_3:-46278176 Msa1291040:CDS
CATAATATTCTACATTCCGC+TGG 0.505432 8_3:-46277942 Msa1291040:CDS
TTCATTCGCTATGCTTTGAG+TGG 0.507650 8_3:-46277905 Msa1291040:CDS
TATAGGTCTTGACTGCAATT+GGG 0.510490 8_3:-46281510 Msa1291040:intron
ATCCTTCATCTGCTTTACTT+GGG 0.514060 8_3:-46279653 Msa1291040:CDS
TCATTCTTTGAAAGATAGCT+CGG 0.514460 8_3:+46279226 None:intergenic
TGCATATGTTCGATTGCTGT+GGG 0.514517 8_3:-46281481 Msa1291040:CDS
ATCACACAGGCTATCCCAGC+AGG 0.518400 8_3:-46281320 Msa1291040:intron
GAATCAGTTGTGAGATTGAA+GGG 0.519821 8_3:-46277077 Msa1291040:CDS
GAGTCCCTGCCAGTGACAAA+AGG 0.520641 8_3:-46281779 Msa1291040:CDS
CCAGAATACACACCATCACC+AGG 0.521274 8_3:+46281755 None:intergenic
AAAGGAAACAGGTCGCCGCT+TGG 0.524179 8_3:-46279694 Msa1291040:CDS
TTTACTACCGGTGTTGTGCT+TGG 0.526280 8_3:-46278650 Msa1291040:CDS
GGACTTTGGGAAGGAACAAA+GGG 0.526731 8_3:-46277749 Msa1291040:CDS
CAATAGATACTGCCATAGTT+GGG 0.527576 8_3:-46280928 Msa1291040:CDS
TCCAGATAGCTGGAAGCTAT+CGG 0.527848 8_3:-46278678 Msa1291040:CDS
GATGACAGCCATTGAAGAGA+TGG 0.528637 8_3:-46281197 Msa1291040:CDS
GACATCATCAGTATCAAACT+TGG 0.530148 8_3:-46281989 Msa1291040:CDS
TCTTTGAAAGATAGCTCGGC+TGG 0.532150 8_3:+46279230 None:intergenic
ATCAACAGGTAAGGCAGCAA+TGG 0.532285 8_3:+46279614 None:intergenic
CAAGCTAGGAAACACATTTG+TGG 0.534932 8_3:-46279402 Msa1291040:CDS
TTGTAACTCGATCTCGAGGC+TGG 0.534936 8_3:-46278196 Msa1291040:CDS
TTTGTCAAGGTTCTTCGAGA+TGG 0.535316 8_3:-46282052 Msa1291040:intron
CAGATGCACGGCTTCTAGAA+GGG 0.535760 8_3:-46281952 Msa1291040:CDS
TTCAGTGACATGTGTCCCAC+CGG 0.536554 8_3:+46277660 None:intergenic
TCATTCGCTATGCTTTGAGT+GGG 0.542241 8_3:-46277904 Msa1291040:CDS
TGCTTTACTTGGGCAGAACA+AGG 0.543504 8_3:-46279643 Msa1291040:CDS
TATAGGAAGTTCCTGATGGA+AGG 0.543816 8_3:-46280349 Msa1291040:intron
CCGTCTCGCGCCAAAAGCTA+AGG 0.543860 8_3:-46282212 Msa1291040:intron
GAAGGCGTGGTTATAGCTAC+TGG 0.544024 8_3:-46281707 Msa1291040:CDS
CTGCATATGTTCGATTGCTG+TGG 0.545794 8_3:-46281482 Msa1291040:CDS
GGATCCGTTGAAAATCGATC+AGG 0.546129 8_3:-46281930 Msa1291040:intron
AAAGGAGAGCTGAAATTGCT+AGG 0.546353 8_3:-46277612 Msa1291040:intron
GAGAGAGCTTCATACATTGA+AGG 0.547069 8_3:-46277108 Msa1291040:CDS
AGCTTCCAGCTATCTGGAAG+AGG 0.550022 8_3:+46278683 None:intergenic
AGAGAGCTTCATACATTGAA+GGG 0.550728 8_3:-46277107 Msa1291040:CDS
AGAATCAGTTGTGAGATTGA+AGG 0.550798 8_3:-46277078 Msa1291040:CDS
TTTATATAGGAAGTTCCTGA+TGG 0.551048 8_3:-46280353 Msa1291040:intron
CCGGTGAACATCTTAGTGTC+CGG 0.552804 8_3:+46277679 None:intergenic
TCAGGGGATCAGCTAGCTAT+CGG 0.555514 8_3:-46279717 Msa1291040:intron
CATTGAAGAGATGGCAGGCA+TGG 0.555608 8_3:-46281188 Msa1291040:CDS
AATTAGATCATCAACAGGTA+AGG 0.557587 8_3:+46279605 None:intergenic
TGGGATGCTGGCTGATCCAA+AGG 0.558633 8_3:-46280909 Msa1291040:CDS
GATCTAATTGAGAAAGCTGA+TGG 0.559392 8_3:-46279591 Msa1291040:CDS
AACTGTGTATGCTTGCTGAA+TGG 0.559405 8_3:+46277040 None:intergenic
TCGGCACTATCATGTCTTGG+AGG 0.560565 8_3:+46280272 None:intergenic
GGGATCTTGTCATTGAGCAA+AGG 0.561437 8_3:-46277874 Msa1291040:CDS
GTTGATACTACAAATCAAGT+TGG 0.561784 8_3:-46281650 Msa1291040:CDS
AGGACTTTGGGAAGGAACAA+AGG 0.562033 8_3:-46277750 Msa1291040:CDS
CTGCCAGTGACAAAAGGCCC+TGG 0.563065 8_3:-46281773 Msa1291040:CDS
TTGTCAGTGACCATGGCGAT+AGG 0.563487 8_3:-46281343 Msa1291040:CDS
ATTGACTTATATTGATCAAG+AGG 0.566097 8_3:-46280703 Msa1291040:CDS
CCTGCATGGATTACAACCTC+CGG 0.567608 8_3:-46277698 Msa1291040:CDS
ATACGGAGGGCACTAAACCT+TGG 0.568950 8_3:-46280245 Msa1291040:CDS
TTGCTACCATAGGCACGTGC+TGG 0.571089 8_3:-46280777 Msa1291040:intron
TGCAAACAAGGAGAGATTGA+AGG 0.571153 8_3:-46281725 Msa1291040:CDS
GATGGAAGGAAAGAAAGTCC+TGG 0.571957 8_3:-46280335 Msa1291040:CDS
CACTGACAAAACAGTGGGCA+TGG 0.573250 8_3:+46281357 None:intergenic
TGCAATCGAAGGGATAGGCT+GGG 0.573704 8_3:-46277993 Msa1291040:CDS
GTGACAAAAGGCCCTGGTGA+TGG 0.573913 8_3:-46281767 Msa1291040:CDS
ATGATAGTGCCGAAACCATA+CGG 0.574726 8_3:-46280262 Msa1291040:CDS
TGCCCAAGTAAAGCAGATGA+AGG 0.576649 8_3:+46279651 None:intergenic
AAACACATTTGTGGGATGAC+TGG 0.580034 8_3:-46279393 Msa1291040:CDS
TGAACTTAATCAAATGGCTG+AGG 0.580598 8_3:-46277641 Msa1291040:CDS
GTGCTTTGCAGTGATAAGAC+TGG 0.580725 8_3:-46281163 Msa1291040:CDS
ATAGACAAGTTTGCAGAGCG+TGG 0.585774 8_3:-46280499 Msa1291040:CDS
TAGTTACTTGGCAATGATGA+CGG 0.586240 8_3:-46278627 Msa1291040:CDS
TTTGCTGCAATCGAAGGGAT+AGG 0.586360 8_3:-46277998 Msa1291040:CDS
TGCATCAGTAGCATCTGCAA+CGG 0.587629 8_3:+46279320 None:intergenic
TGATGATGTCACCAGGAACC+AGG 0.588618 8_3:+46282002 None:intergenic
TCAAGGTTCTTCGAGATGGT+AGG 0.588773 8_3:-46282048 Msa1291040:intron
ACAGCCATTGAAGAGATGGC+AGG 0.593239 8_3:-46281193 Msa1291040:CDS
AGATGCACGGCTTCTAGAAG+GGG 0.595126 8_3:-46281951 Msa1291040:CDS
ATATTGTTCCAGCAGATGCA+CGG 0.596084 8_3:-46281964 Msa1291040:CDS
ATAATAAGAACCATAAAAGG+TGG 0.598996 8_3:+46278871 None:intergenic
CTATCGGAGATATTTACTAC+CGG 0.601550 8_3:-46278662 Msa1291040:CDS
TCTGGTTCTACCTGCAAACA+AGG 0.602835 8_3:-46281737 Msa1291040:CDS
TATTGTAGATTGCTTTCACA+AGG 0.604105 8_3:-46277777 Msa1291040:intron
GCAATCGAAGGGATAGGCTG+GGG 0.604832 8_3:-46277992 Msa1291040:CDS
AAGAAAGTCCTGGAACTCCA+TGG 0.606050 8_3:-46280325 Msa1291040:CDS
CGGAGGTTGTAATCCATGCA+GGG 0.609499 8_3:+46277699 None:intergenic
AGGTTCTTCGAGATGGTAGG+TGG 0.611476 8_3:-46282045 Msa1291040:CDS
ATCTAATTGAGAAAGCTGAT+GGG 0.612368 8_3:-46279590 Msa1291040:CDS
CCGGACACTAAGATGTTCAC+CGG 0.613058 8_3:-46277679 Msa1291040:CDS
GGAGCTTTGCTGCAATCGAA+GGG 0.614012 8_3:-46278003 Msa1291040:CDS
ACAAGGAGAGATTGAAGGCG+TGG 0.615080 8_3:-46281720 Msa1291040:CDS
CTTGATTTGTAGTATCAACA+AGG 0.615439 8_3:+46281654 None:intergenic
ACACTAAGATGTTCACCGGT+GGG 0.616255 8_3:-46277675 Msa1291040:CDS
AGCAGATGAAGGATACATGT+TGG 0.616925 8_3:+46279662 None:intergenic
ATTATTGCTATCCTAAACGA+TGG 0.618980 8_3:-46278853 Msa1291040:intron
AAGAGTCTAACTGACCTGCT+GGG 0.619799 8_3:+46281306 None:intergenic
TTGACTTATATTGATCAAGA+GGG 0.624817 8_3:-46280702 Msa1291040:CDS
CATGCACAAAGAACCCTGCA+TGG 0.626354 8_3:-46277712 Msa1291040:CDS
ATATTTGTAACTCGATCTCG+AGG 0.627652 8_3:-46278200 Msa1291040:CDS
CTTATAATAACACTGAGGCC+AGG 0.629755 8_3:+46279264 None:intergenic
TGATGGAGTGAATGATGCAC+CGG 0.631894 8_3:-46279370 Msa1291040:CDS
GACACTAAGATGTTCACCGG+TGG 0.636876 8_3:-46277676 Msa1291040:CDS
GTCACCAGGAACCAGGATCG+CGG 0.637630 8_3:+46282009 None:intergenic
ACAAATACGAGATTGTGAAA+CGG 0.640674 8_3:-46279428 Msa1291040:CDS
ATAAGTCCAATAAATTGCCA+TGG 0.642144 8_3:+46280308 None:intergenic
ATTTGTGGGATGACTGGTGA+TGG 0.647709 8_3:-46279387 Msa1291040:CDS
ATGGTCACTGACAAAACAGT+GGG 0.653438 8_3:+46281352 None:intergenic
CCTGTGTGATCCTATCGCCA+TGG 0.657482 8_3:+46281333 None:intergenic
AAGGCAAAAGGACTTTGGGA+AGG 0.661231 8_3:-46277758 Msa1291040:CDS
GCAGCAACCAGCAATAAACC+GGG 0.664540 8_3:+46278158 None:intergenic
TTGATACTGATGATGTCACC+AGG 0.665644 8_3:+46281995 None:intergenic
AATCAGTTGTGAGATTGAAG+GGG 0.667691 8_3:-46277076 Msa1291040:CDS
GGATCAGCTAGCTATCGGAA+AGG 0.669861 8_3:-46279712 Msa1291040:CDS
AAAATGCATAGAGTAAGCAA+AGG 0.670506 8_3:-46280678 Msa1291040:CDS
GTAACTACCAAGCACAACAC+CGG 0.671020 8_3:+46278643 None:intergenic
TAGTGCCGAAACCATACGGA+GGG 0.674619 8_3:-46280258 Msa1291040:CDS
TGTCTTGGAGGATCAAAGAG+AGG 0.678817 8_3:+46280284 None:intergenic
GTGAACATCTTAGTGTCCGG+AGG 0.683809 8_3:+46277682 None:intergenic
TCGAGCCGCCATCAAAACAA+CGG 0.689298 8_3:+46280976 None:intergenic
CATGGTCACTGACAAAACAG+TGG 0.694041 8_3:+46281351 None:intergenic
TTCCTCCAATAAGAAGCACA+AGG 0.695457 8_3:+46281389 None:intergenic
GATGCTGGCTGATCCAAAGG+AGG 0.716881 8_3:-46280906 Msa1291040:intron
CTCCAATAAGAAGCACAAGG+AGG 0.717466 8_3:+46281392 None:intergenic
CAGAATACACACCATCACCA+GGG 0.718415 8_3:+46281756 None:intergenic
TGTTGGTACCCATTCCCAAG+CGG 0.720829 8_3:+46279679 None:intergenic
CACTTGAAGATAGATTGCAG+AGG 0.745140 8_3:+46278244 None:intergenic
ATAGTGCCGAAACCATACGG+AGG 0.750722 8_3:-46280259 Msa1291040:CDS
CAGCACTTATAATAACACTG+AGG 0.786963 8_3:+46279259 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCATTTTTTATGTATT+TGG - chr8_3:46279585-46279604 Msa1291040:CDS 10.0%
!! AACTATTAAAAATATGTATA+TGG + chr8_3:46281694-46281713 None:intergenic 10.0%
!!! TATACATATTTTTAATAGTT+TGG - chr8_3:46281694-46281713 Msa1291040:CDS 10.0%
!! ATTTCATATTTAAATTAAGT+CGG - chr8_3:46281865-46281884 Msa1291040:intron 10.0%
!! ATATATTAAAAAAAGTAAGC+AGG - chr8_3:46279045-46279064 Msa1291040:intron 15.0%
!! TATATTAAAAAAAGTAAGCA+GGG - chr8_3:46279046-46279065 Msa1291040:intron 15.0%
!!! TGTTTTACATAATTATTAGA+TGG - chr8_3:46280065-46280084 Msa1291040:intron 15.0%
!! TTATATTACAAAAAAGGTTT+CGG - chr8_3:46281503-46281522 Msa1291040:CDS 15.0%
!! AAATAATCAAATACATGTTA+TGG + chr8_3:46281894-46281913 None:intergenic 15.0%
!! ATAACATGTATTTGATTATT+TGG - chr8_3:46281893-46281912 Msa1291040:intron 15.0%
!! AAATGTTAACAAAAGTTAAA+AGG + chr8_3:46282124-46282143 None:intergenic 15.0%
!!! AATTCTGTTTTTTTGTTATG+TGG - chr8_3:46276860-46276879 Msa1291040:three_prime_UTR 20.0%
!! TTAAATTATTGCTTTCGTAA+AGG - chr8_3:46276920-46276939 Msa1291040:three_prime_UTR 20.0%
!!! TATTTCTATCTTATTCAATC+AGG - chr8_3:46278017-46278036 Msa1291040:CDS 20.0%
!!! GTAAGTTTTGATATACTATT+CGG - chr8_3:46278159-46278178 Msa1291040:CDS 20.0%
!! AAAATTTATGAGAAATATGC+CGG + chr8_3:46278196-46278215 None:intergenic 20.0%
!! AAAGCAATAAATCAATTACT+TGG + chr8_3:46278594-46278613 None:intergenic 20.0%
!! ATTTATTGCTTTATCAATTG+AGG - chr8_3:46278602-46278621 Msa1291040:CDS 20.0%
!!! ATGGATTATATGAATTCTTT+CGG + chr8_3:46278904-46278923 None:intergenic 20.0%
!! ATATATGCGAAAATTGTAAA+AGG + chr8_3:46279031-46279050 None:intergenic 20.0%
!!! GTATGTAGTAATTTAAAATG+AGG - chr8_3:46279205-46279224 Msa1291040:intron 20.0%
!! TAAAATGAGGCTTATATATT+AGG - chr8_3:46279218-46279237 Msa1291040:CDS 20.0%
!! AAAATGAGGCTTATATATTA+GGG - chr8_3:46279219-46279238 Msa1291040:CDS 20.0%
!! AAAAATTATACAGTAAGCAA+CGG - chr8_3:46279839-46279858 Msa1291040:intron 20.0%
!! TACAATACATTATGAAGTAA+AGG + chr8_3:46279926-46279945 None:intergenic 20.0%
!! TACAAGTGATTTATATATCT+TGG - chr8_3:46280287-46280306 Msa1291040:CDS 20.0%
!!! TGCTGTAGTTTTATTATAAT+CGG - chr8_3:46280511-46280530 Msa1291040:CDS 20.0%
!! GCACATAAATTGAAATTAAT+GGG + chr8_3:46280648-46280667 None:intergenic 20.0%
!! AAAAATTTAATGAAATCCAG+CGG + chr8_3:46281120-46281139 None:intergenic 20.0%
!! GCACAATTATATTACAAAAA+AGG - chr8_3:46281497-46281516 Msa1291040:CDS 20.0%
!! TATATTACAAAAAAGGTTTC+GGG - chr8_3:46281504-46281523 Msa1291040:CDS 20.0%
!!! TCGTATAACAAATTCAATTT+TGG + chr8_3:46281624-46281643 None:intergenic 20.0%
!!! AATTTAAACACCTTAGCTTT+TGG + chr8_3:46276844-46276863 None:intergenic 25.0%
! TCTGAATTGTGAATATTGAT+TGG + chr8_3:46277481-46277500 None:intergenic 25.0%
!!! TCTATATTTTGCTGTCATAT+AGG - chr8_3:46277516-46277535 Msa1291040:intron 25.0%
!!! TTTTAACTTATTGCTACCAT+AGG - chr8_3:46278256-46278275 Msa1291040:CDS 25.0%
!! ATTGACTTATATTGATCAAG+AGG - chr8_3:46278340-46278359 Msa1291040:intron 25.0%
! TTGACTTATATTGATCAAGA+GGG - chr8_3:46278341-46278360 Msa1291040:intron 25.0%
! GTTAATGTCAAAATGATTAC+AGG - chr8_3:46278822-46278841 Msa1291040:intron 25.0%
! GTTAATTTCTAACAGTATCA+TGG + chr8_3:46278923-46278942 None:intergenic 25.0%
!! AACTTATGCATTTCAAGTAA+AGG - chr8_3:46278940-46278959 Msa1291040:intron 25.0%
! GAGATAGTAAGTTATATTGT+TGG + chr8_3:46278986-46279005 None:intergenic 25.0%
!! TTTTCATCTTTCAAGAAACT+TGG - chr8_3:46279145-46279164 Msa1291040:intron 25.0%
! GAAACTTGGTATTAATTATG+CGG - chr8_3:46279159-46279178 Msa1291040:intron 25.0%
! AAGTAACATAAATGGAAACA+AGG + chr8_3:46279294-46279313 None:intergenic 25.0%
! GAAAAAGGAAGTAACATAAA+TGG + chr8_3:46279302-46279321 None:intergenic 25.0%
! GTAGTAAATCAAGTATTACA+TGG - chr8_3:46279552-46279571 Msa1291040:intron 25.0%
! AATACATTATGAAGTAAAGG+TGG + chr8_3:46279923-46279942 None:intergenic 25.0%
! GTTAATCATTCTTCAAATCT+TGG - chr8_3:46280014-46280033 Msa1291040:intron 25.0%
! ATAATAAGAACCATAAAAGG+TGG + chr8_3:46280175-46280194 None:intergenic 25.0%
! GCAATAATAAGAACCATAAA+AGG + chr8_3:46280178-46280197 None:intergenic 25.0%
! ATAAATCACTTGTAATACTC+AGG + chr8_3:46280281-46280300 None:intergenic 25.0%
! TTATATATCTTGGACATTGT+AGG - chr8_3:46280297-46280316 Msa1291040:CDS 25.0%
! TCATGACAATTTCAAAAGAT+AGG - chr8_3:46280325-46280344 Msa1291040:CDS 25.0%
! CATGACAATTTCAAAAGATA+GGG - chr8_3:46280326-46280345 Msa1291040:CDS 25.0%
! CGCACATAAATTGAAATTAA+TGG + chr8_3:46280649-46280668 None:intergenic 25.0%
!!! TTTTGCCTTTTGATTGTTTT+GGG - chr8_3:46280682-46280701 Msa1291040:CDS 25.0%
!! TGAAAATTTTCATCGATGTT+TGG + chr8_3:46281601-46281620 None:intergenic 25.0%
! TTTATTTAATCCAACAAGCA+TGG + chr8_3:46281732-46281751 None:intergenic 25.0%
! AATTAGCTGCCAAAAAATAT+TGG - chr8_3:46281750-46281769 Msa1291040:CDS 25.0%
! GCATATGAAAATACTGTAAA+TGG - chr8_3:46282045-46282064 Msa1291040:CDS 25.0%
TTAAACAAGCGGGATTAAAA+AGG + chr8_3:46277184-46277203 None:intergenic 30.0%
!! CTTGATTTGTAGTATCAACA+AGG + chr8_3:46277392-46277411 None:intergenic 30.0%
GTTGATACTACAAATCAAGT+TGG - chr8_3:46277393-46277412 Msa1291040:intron 30.0%
! ATTGTGAATATTGATTGGAC+TGG + chr8_3:46277476-46277495 None:intergenic 30.0%
CTAGTGCAAGTAACAATTAA+TGG - chr8_3:46277789-46277808 Msa1291040:intron 30.0%
!!! AATGGTTTTTTAATGTCTGC+AGG - chr8_3:46277807-46277826 Msa1291040:intron 30.0%
!!! ATGGTTTTTTAATGTCTGCA+GGG - chr8_3:46277808-46277827 Msa1291040:intron 30.0%
! CTCAACAAGATTTTTGTCAA+CGG + chr8_3:46277929-46277948 None:intergenic 30.0%
! TTCAATCAGGTTTTTGCAAA+AGG - chr8_3:46278030-46278049 Msa1291040:CDS 30.0%
ATATCAAAACTTACCTCCTT+TGG + chr8_3:46278153-46278172 None:intergenic 30.0%
!! CTATTCGGCTATTTTATTAC+CGG - chr8_3:46278174-46278193 Msa1291040:CDS 30.0%
AAAATGCATAGAGTAAGCAA+AGG - chr8_3:46278365-46278384 Msa1291040:intron 30.0%
TGATTGTTAGATCCTAAATC+TGG - chr8_3:46278480-46278499 Msa1291040:intron 30.0%
GAAACTAGAAATGTTTATGC+TGG - chr8_3:46278658-46278677 Msa1291040:CDS 30.0%
! CTGGCTTCTCAATTTTATAT+AGG - chr8_3:46278677-46278696 Msa1291040:CDS 30.0%
TTTATATAGGAAGTTCCTGA+TGG - chr8_3:46278690-46278709 Msa1291040:CDS 30.0%
ATAAGTCCAATAAATTGCCA+TGG + chr8_3:46278738-46278757 None:intergenic 30.0%
!! TCATTTTGACATTAACTCCA+AGG + chr8_3:46278818-46278837 None:intergenic 30.0%
GAACACACTATCATATTCAA+CGG + chr8_3:46278849-46278868 None:intergenic 30.0%
CAATGATACAGATAAGTCAA+AGG + chr8_3:46278871-46278890 None:intergenic 30.0%
AAGGACGGAGTTTATAATAA+GGG + chr8_3:46279012-46279031 None:intergenic 30.0%
AAAGGACGGAGTTTATAATA+AGG + chr8_3:46279013-46279032 None:intergenic 30.0%
ATGCGAAAATTGTAAAAGGA+CGG + chr8_3:46279027-46279046 None:intergenic 30.0%
TGAACATATCCATACACAAA+AGG + chr8_3:46279117-46279136 None:intergenic 30.0%
TAACATAAATGGAAACAAGG+AGG + chr8_3:46279291-46279310 None:intergenic 30.0%
! TTACTTCCTTTTTCCTTATC+AGG - chr8_3:46279308-46279327 Msa1291040:CDS 30.0%
! TACTTCCTTTTTCCTTATCA+GGG - chr8_3:46279309-46279328 Msa1291040:CDS 30.0%
AATTAGATCATCAACAGGTA+AGG + chr8_3:46279441-46279460 None:intergenic 30.0%
TTCTCAATTAGATCATCAAC+AGG + chr8_3:46279446-46279465 None:intergenic 30.0%
ATCTAATTGAGAAAGCTGAT+GGG - chr8_3:46279453-46279472 Msa1291040:intron 30.0%
ACAAATACGAGATTGTGAAA+CGG - chr8_3:46279615-46279634 Msa1291040:CDS 30.0%
AGGTTCTGTCAAAACAATAT+CGG + chr8_3:46279762-46279781 None:intergenic 30.0%
! TCATTCTTTGAAAGATAGCT+CGG + chr8_3:46279820-46279839 None:intergenic 30.0%
TTATGAAGTAAAGGTGGTAT+AGG + chr8_3:46279917-46279936 None:intergenic 30.0%
CTCAATTACAATTCGTATTG+TGG - chr8_3:46279988-46280007 Msa1291040:intron 30.0%
!! GTTTGATTTTCCACCTTTTA+TGG - chr8_3:46280162-46280181 Msa1291040:intron 30.0%
ATTATTGCTATCCTAAACGA+TGG - chr8_3:46280190-46280209 Msa1291040:intron 30.0%
TAAGAAACAAACCATCGTTT+AGG + chr8_3:46280204-46280223 None:intergenic 30.0%
!!! TGATGACGGTTATATTCTTT+TGG - chr8_3:46280430-46280449 Msa1291040:intron 30.0%
!! GATGACGGTTATATTCTTTT+GGG - chr8_3:46280431-46280450 Msa1291040:intron 30.0%
ATACAAAACAGATTTCTTCC+CGG - chr8_3:46280458-46280477 Msa1291040:intron 30.0%
!! CTTTTGCCTTTTGATTGTTT+TGG - chr8_3:46280681-46280700 Msa1291040:CDS 30.0%
!!! TATGCTTTTCAGAAAGTGTT+TGG - chr8_3:46280729-46280748 Msa1291040:CDS 30.0%
TGATAAAATAAAACCAGCCT+TGG + chr8_3:46281228-46281247 None:intergenic 30.0%
TATTGTAGATTGCTTTCACA+AGG - chr8_3:46281266-46281285 Msa1291040:intron 30.0%
TGTCACTGAACTTAATCAAA+TGG - chr8_3:46281396-46281415 Msa1291040:CDS 30.0%
!! TTAGTGTTTAGTTCTCAATC+TGG - chr8_3:46281560-46281579 Msa1291040:intron 30.0%
TTCTCAATCTGGTAATTTCT+AGG - chr8_3:46281571-46281590 Msa1291040:intron 30.0%
TTGTAAAATACTCTCCTATC+AGG + chr8_3:46281652-46281671 None:intergenic 30.0%
!!! TGATAGGAGAGTATTTTACA+AGG - chr8_3:46281651-46281670 Msa1291040:CDS 30.0%
!!! GATAGGAGAGTATTTTACAA+GGG - chr8_3:46281652-46281671 Msa1291040:CDS 30.0%
!!! TTGCTACAGCCAATATTTTT+TGG + chr8_3:46281762-46281781 None:intergenic 30.0%
! CACGTGATATGTTTTATCTT+AGG + chr8_3:46281813-46281832 None:intergenic 30.0%
! ATTTGGTAATAATTGTGTGC+AGG - chr8_3:46281910-46281929 Msa1291040:intron 30.0%
ATAGTACTTTCAGCAACATT+AGG + chr8_3:46282077-46282096 None:intergenic 30.0%
!! TTTTAAGTGCTCAAAACAGA+GGG + chr8_3:46282154-46282173 None:intergenic 30.0%
!!! TTTTTAAGTGCTCAAAACAG+AGG + chr8_3:46282155-46282174 None:intergenic 30.0%
!! TGTTTTGAGCACTTAAAAAG+TGG - chr8_3:46282156-46282175 Msa1291040:intron 30.0%
CGAAAGCAATAATTTAACCG+CGG + chr8_3:46276917-46276936 None:intergenic 35.0%
!!! ACCATGAGTGTTTTTTGTCA+AGG - chr8_3:46276978-46276997 Msa1291040:three_prime_UTR 35.0%
ACCTTGACAAAAAACACTCA+TGG + chr8_3:46276982-46277001 None:intergenic 35.0%
GACATCATCAGTATCAAACT+TGG - chr8_3:46277054-46277073 Msa1291040:CDS 35.0%
!! TCAACCTGATCGATTTTCAA+CGG + chr8_3:46277120-46277139 None:intergenic 35.0%
!! ATTCGATGGATTAAACAAGC+GGG + chr8_3:46277194-46277213 None:intergenic 35.0%
!! CATTCGATGGATTAAACAAG+CGG + chr8_3:46277195-46277214 None:intergenic 35.0%
TTAAACTGTTGAGCATTCGA+TGG + chr8_3:46277208-46277227 None:intergenic 35.0%
! ACTGGTGTTCATACCTTTTT+CGG - chr8_3:46277354-46277373 Msa1291040:intron 35.0%
ATATAGGTCTTGACTGCAAT+TGG - chr8_3:46277532-46277551 Msa1291040:intron 35.0%
TATAGGTCTTGACTGCAATT+GGG - chr8_3:46277533-46277552 Msa1291040:intron 35.0%
!!! TGGTTTTTTAATGTCTGCAG+GGG - chr8_3:46277809-46277828 Msa1291040:intron 35.0%
CGTTGACAAAAATCTTGTTG+AGG - chr8_3:46277927-46277946 Msa1291040:CDS 35.0%
GACAAAAATCTTGTTGAGGT+TGG - chr8_3:46277931-46277950 Msa1291040:CDS 35.0%
ACAAACAAACGCATCTGAAA+CGG + chr8_3:46277991-46278010 None:intergenic 35.0%
CAATAGATACTGCCATAGTT+GGG - chr8_3:46278115-46278134 Msa1291040:intron 35.0%
! TTTTCTTCCTTTCAATCCGA+CGG - chr8_3:46278304-46278323 Msa1291040:CDS 35.0%
! GTTATATTGTTGGCTATGTG+AGG + chr8_3:46278976-46278995 None:intergenic 35.0%
AGGACGGAGTTTATAATAAG+GGG + chr8_3:46279011-46279030 None:intergenic 35.0%
! ACACAAAAGGTAGGTGTTTT+AGG + chr8_3:46279104-46279123 None:intergenic 35.0%
! AAACACCTACCTTTTGTGTA+TGG - chr8_3:46279105-46279124 Msa1291040:intron 35.0%
CATATCCATACACAAAAGGT+AGG + chr8_3:46279113-46279132 None:intergenic 35.0%
!! TTCTTTCCAAAAAGCGCTTA+TGG - chr8_3:46279256-46279275 Msa1291040:CDS 35.0%
ATGGAAACAAGGAGGATATT+GGG + chr8_3:46279283-46279302 None:intergenic 35.0%
AATGGAAACAAGGAGGATAT+TGG + chr8_3:46279284-46279303 None:intergenic 35.0%
! ACTTCCTTTTTCCTTATCAG+GGG - chr8_3:46279310-46279329 Msa1291040:CDS 35.0%
TATCCTTCATCTGCTTTACT+TGG - chr8_3:46279389-46279408 Msa1291040:CDS 35.0%
ATCCTTCATCTGCTTTACTT+GGG - chr8_3:46279390-46279409 Msa1291040:CDS 35.0%
GATCTAATTGAGAAAGCTGA+TGG - chr8_3:46279452-46279471 Msa1291040:intron 35.0%
AAGCTAGGAAACACATTTGT+GGG - chr8_3:46279642-46279661 Msa1291040:CDS 35.0%
!!! GATATTGTTTTGACAGAACC+TGG - chr8_3:46279761-46279780 Msa1291040:intron 35.0%
CAGCACTTATAATAACACTG+AGG + chr8_3:46279787-46279806 None:intergenic 35.0%
GATCTAATGTTTACCTGACA+CGG - chr8_3:46280036-46280055 Msa1291040:intron 35.0%
CTATCGGAGATATTTACTAC+CGG - chr8_3:46280381-46280400 Msa1291040:intron 35.0%
TAGTTACTTGGCAATGATGA+CGG - chr8_3:46280416-46280435 Msa1291040:intron 35.0%
!! ATACTCTAGAATTGAGTTCG+TGG + chr8_3:46280492-46280511 None:intergenic 35.0%
CAATGACATCAATGCATGTT+GGG - chr8_3:46280556-46280575 Msa1291040:CDS 35.0%
ATATTTGTAACTCGATCTCG+AGG - chr8_3:46280843-46280862 Msa1291040:intron 35.0%
ATAACTACAGCGGCATAAAA+TGG + chr8_3:46280947-46280966 None:intergenic 35.0%
GCAGTGAAAAATAACTACAG+CGG + chr8_3:46280957-46280976 None:intergenic 35.0%
CATAATATTCTACATTCCGC+TGG - chr8_3:46281101-46281120 Msa1291040:intron 35.0%
TTCTTGAGTTTAGCAATCCA+AGG - chr8_3:46281208-46281227 Msa1291040:CDS 35.0%
TGAACTTAATCAAATGGCTG+AGG - chr8_3:46281402-46281421 Msa1291040:CDS 35.0%
GCATGAAGTAGTAATTGAGA+AGG + chr8_3:46281465-46281484 None:intergenic 35.0%
GTTATACGAGTAAACCTGAT+AGG - chr8_3:46281635-46281654 Msa1291040:intron 35.0%
TTTACAGATTCCATGCTTGT+TGG - chr8_3:46281719-46281738 Msa1291040:CDS 35.0%
AGAGAGCTTCATACATTGAA+GGG - chr8_3:46281936-46281955 Msa1291040:CDS 35.0%
AGAATCAGTTGTGAGATTGA+AGG - chr8_3:46281965-46281984 Msa1291040:CDS 35.0%
GAATCAGTTGTGAGATTGAA+GGG - chr8_3:46281966-46281985 Msa1291040:CDS 35.0%
AATCAGTTGTGAGATTGAAG+GGG - chr8_3:46281967-46281986 Msa1291040:CDS 35.0%
ATTGCGTATTAATATCGCCG+CGG - chr8_3:46276897-46276916 Msa1291040:three_prime_UTR 40.0%
TTTGTCAAGGTTCTTCGAGA+TGG - chr8_3:46276991-46277010 Msa1291040:three_prime_UTR 40.0%
! TTGATACTGATGATGTCACC+AGG + chr8_3:46277051-46277070 None:intergenic 40.0%
ATATTGTTCCAGCAGATGCA+CGG - chr8_3:46277079-46277098 Msa1291040:CDS 40.0%
AACAAGCGGGATTAAAAAGG+CGG + chr8_3:46277181-46277200 None:intergenic 40.0%
! TTCAATCTCTCCTTGTTTGC+AGG + chr8_3:46277319-46277338 None:intergenic 40.0%
TGCAAACAAGGAGAGATTGA+AGG - chr8_3:46277318-46277337 Msa1291040:intron 40.0%
ACTTCCAACAGGTAACATGT+CGG - chr8_3:46277418-46277437 Msa1291040:intron 40.0%
TGCATATGTTCGATTGCTGT+GGG - chr8_3:46277562-46277581 Msa1291040:intron 40.0%
AACCTCCTTGTGCTTCTTAT+TGG - chr8_3:46277649-46277668 Msa1291040:CDS 40.0%
! TTCCTCCAATAAGAAGCACA+AGG + chr8_3:46277657-46277676 None:intergenic 40.0%
ATGGTCACTGACAAAACAGT+GGG + chr8_3:46277694-46277713 None:intergenic 40.0%
!!! GGTTTTTTAATGTCTGCAGG+GGG - chr8_3:46277810-46277829 Msa1291040:intron 40.0%
CTGAAACGGACAAAGATAAC+TGG + chr8_3:46277977-46277996 None:intergenic 40.0%
! TCAGGTTTTTGCAAAAGGAG+TGG - chr8_3:46278035-46278054 Msa1291040:CDS 40.0%
GCAATAGATACTGCCATAGT+TGG - chr8_3:46278114-46278133 Msa1291040:intron 40.0%
!! GTGTTGCTTATTACCTGTTC+TGG + chr8_3:46278395-46278414 None:intergenic 40.0%
GAACAGGTAATAAGCAACAC+TGG - chr8_3:46278395-46278414 Msa1291040:intron 40.0%
TCTTATCGTGTGCCAGATTT+AGG + chr8_3:46278495-46278514 None:intergenic 40.0%
TATAGGAAGTTCCTGATGGA+AGG - chr8_3:46278694-46278713 Msa1291040:CDS 40.0%
ATAAATTGCCATGGAGTTCC+AGG + chr8_3:46278729-46278748 None:intergenic 40.0%
GGAACTCCATGGCAATTTAT+TGG - chr8_3:46278729-46278748 Msa1291040:intron 40.0%
! ATGATAGTGCCGAAACCATA+CGG - chr8_3:46278781-46278800 Msa1291040:intron 40.0%
TGATCCCCTGATAAGGAAAA+AGG + chr8_3:46279317-46279336 None:intergenic 40.0%
AGCAGATGAAGGATACATGT+TGG + chr8_3:46279384-46279403 None:intergenic 40.0%
ACAATCTCGTATTTGTGCTC+TGG + chr8_3:46279611-46279630 None:intergenic 40.0%
CAAGCTAGGAAACACATTTG+TGG - chr8_3:46279641-46279660 Msa1291040:CDS 40.0%
AAACACATTTGTGGGATGAC+TGG - chr8_3:46279650-46279669 Msa1291040:CDS 40.0%
CTTATAATAACACTGAGGCC+AGG + chr8_3:46279782-46279801 None:intergenic 40.0%
TGTGTTTGATGCTTACAGCT+TGG - chr8_3:46280112-46280131 Msa1291040:intron 40.0%
!! TCATGTTGCTGGCTTTGATA+TGG - chr8_3:46280137-46280156 Msa1291040:intron 40.0%
! TGTTGTGCTTGGTAGTTACT+TGG - chr8_3:46280404-46280423 Msa1291040:intron 40.0%
! GACGGTTATATTCTTTTGGG+TGG - chr8_3:46280434-46280453 Msa1291040:intron 40.0%
TGAGTTCGTGGAAAACATAC+CGG + chr8_3:46280480-46280499 None:intergenic 40.0%
! CCAACATGCATTGATGTCAT+TGG + chr8_3:46280558-46280577 None:intergenic 40.0%
CCAATGACATCAATGCATGT+TGG - chr8_3:46280555-46280574 Msa1291040:CDS 40.0%
!! GGATGTTGCTTTGTCCATTA+TGG - chr8_3:46280577-46280596 Msa1291040:intron 40.0%
TCCATTATGGCAGCTATACT+AGG - chr8_3:46280590-46280609 Msa1291040:intron 40.0%
TCCTAGTATAGCTGCCATAA+TGG + chr8_3:46280594-46280613 None:intergenic 40.0%
!!! TGCCTTTTGATTGTTTTGGG+CGG - chr8_3:46280685-46280704 Msa1291040:CDS 40.0%
! TTTTCGGAAATCATCGTGAG+CGG + chr8_3:46280775-46280794 None:intergenic 40.0%
! AGATTGCAGAGGCAAGTTTT+CGG + chr8_3:46280791-46280810 None:intergenic 40.0%
CACTTGAAGATAGATTGCAG+AGG + chr8_3:46280802-46280821 None:intergenic 40.0%
TCAAGTGAGCACTATTAGTC+AGG - chr8_3:46280815-46280834 Msa1291040:intron 40.0%
! TACAAGTTGAGCGACGATAA+AGG + chr8_3:46280910-46280929 None:intergenic 40.0%
TGATTGCAGTTTATGCTAGC+TGG - chr8_3:46281019-46281038 Msa1291040:intron 40.0%
! TTCATTCGCTATGCTTTGAG+TGG - chr8_3:46281138-46281157 Msa1291040:CDS 40.0%
! TCATTCGCTATGCTTTGAGT+GGG - chr8_3:46281139-46281158 Msa1291040:CDS 40.0%
GGATCTTGTCATTGAGCAAA+GGG - chr8_3:46281170-46281189 Msa1291040:CDS 40.0%
GATTGCTTTCACAAGGCAAA+AGG - chr8_3:46281273-46281292 Msa1291040:intron 40.0%
TTCACAAGGCAAAAGGACTT+TGG - chr8_3:46281280-46281299 Msa1291040:intron 40.0%
TCACAAGGCAAAAGGACTTT+GGG - chr8_3:46281281-46281300 Msa1291040:intron 40.0%
AGGAACAAAGGGAACTTCAA+TGG - chr8_3:46281305-46281324 Msa1291040:intron 40.0%
GGAACAAAGGGAACTTCAAT+GGG - chr8_3:46281306-46281325 Msa1291040:intron 40.0%
AAATGGCTGAGGAAGCTAAA+AGG - chr8_3:46281413-46281432 Msa1291040:CDS 40.0%
AAAGGAGAGCTGAAATTGCT+AGG - chr8_3:46281431-46281450 Msa1291040:CDS 40.0%
ACGTGTTTGTGTCTTTCATG+AGG - chr8_3:46281828-46281847 Msa1291040:intron 40.0%
CGTGTTTGTGTCTTTCATGA+GGG - chr8_3:46281829-46281848 Msa1291040:intron 40.0%
GAGAGAGCTTCATACATTGA+AGG - chr8_3:46281935-46281954 Msa1291040:CDS 40.0%
! AACTGTGTATGCTTGCTGAA+TGG + chr8_3:46282006-46282025 None:intergenic 40.0%
TCAAGGTTCTTCGAGATGGT+AGG - chr8_3:46276995-46277014 Msa1291040:three_prime_UTR 45.0%
GGATCCGTTGAAAATCGATC+AGG - chr8_3:46277113-46277132 Msa1291040:CDS 45.0%
! TCTTTTCAGTCTGCACTCAC+AGG - chr8_3:46277240-46277259 Msa1291040:intron 45.0%
CAGAATACACACCATCACCA+GGG + chr8_3:46277290-46277309 None:intergenic 45.0%
!! TCTGGTTCTACCTGCAAACA+AGG - chr8_3:46277306-46277325 Msa1291040:intron 45.0%
GTGAGCAGCTTTACCGAAAA+AGG + chr8_3:46277370-46277389 None:intergenic 45.0%
!! TCAAGTTGGTCACTTCCAAC+AGG - chr8_3:46277407-46277426 Msa1291040:intron 45.0%
CATTCCGACATGTTACCTGT+TGG + chr8_3:46277425-46277444 None:intergenic 45.0%
CAACAGGTAACATGTCGGAA+TGG - chr8_3:46277423-46277442 Msa1291040:intron 45.0%
CTGCATATGTTCGATTGCTG+TGG - chr8_3:46277561-46277580 Msa1291040:intron 45.0%
!! CGATAGCGTCGATGTTGAAT+AGG + chr8_3:46277616-46277635 None:intergenic 45.0%
!! ACAAGGAGGTTATCGATTCC+AGG + chr8_3:46277640-46277659 None:intergenic 45.0%
! CTCCAATAAGAAGCACAAGG+AGG + chr8_3:46277654-46277673 None:intergenic 45.0%
CTCCTTGTGCTTCTTATTGG+AGG - chr8_3:46277652-46277671 Msa1291040:CDS 45.0%
AAAACAGTGGGCATGGCAAT+TGG + chr8_3:46277682-46277701 None:intergenic 45.0%
CATGGTCACTGACAAAACAG+TGG + chr8_3:46277695-46277714 None:intergenic 45.0%
! CACTGTTTTGTCAGTGACCA+TGG - chr8_3:46277693-46277712 Msa1291040:CDS 45.0%
AAGAGTCTAACTGACCTGCT+GGG + chr8_3:46277740-46277759 None:intergenic 45.0%
GATGACAGCCATTGAAGAGA+TGG - chr8_3:46277846-46277865 Msa1291040:intron 45.0%
GTGCTTTGCAGTGATAAGAC+TGG - chr8_3:46277880-46277899 Msa1291040:CDS 45.0%
!!! TGCTGATGCCGTTGTTTTGA+TGG - chr8_3:46278059-46278078 Msa1291040:intron 45.0%
!!! TGATGCCGTTGTTTTGATGG+CGG - chr8_3:46278062-46278081 Msa1291040:intron 45.0%
ATAGACAAGTTTGCAGAGCG+TGG - chr8_3:46278544-46278563 Msa1291040:intron 45.0%
GGACTTTCTTTCCTTCCATC+AGG + chr8_3:46278708-46278727 None:intergenic 45.0%
GATGGAAGGAAAGAAAGTCC+TGG - chr8_3:46278708-46278727 Msa1291040:CDS 45.0%
AAGAAAGTCCTGGAACTCCA+TGG - chr8_3:46278718-46278737 Msa1291040:CDS 45.0%
TGTCTTGGAGGATCAAAGAG+AGG + chr8_3:46278762-46278781 None:intergenic 45.0%
GTTTCGGCACTATCATGTCT+TGG + chr8_3:46278777-46278796 None:intergenic 45.0%
! TTGTTGGCTATGTGAGGAAG+AGG + chr8_3:46278970-46278989 None:intergenic 45.0%
! TTGGGTCCATAAGCGCTTTT+TGG + chr8_3:46279265-46279284 None:intergenic 45.0%
CTAGCTATCGGAAAGGAAAC+AGG - chr8_3:46279338-46279357 Msa1291040:CDS 45.0%
TGCCCAAGTAAAGCAGATGA+AGG + chr8_3:46279395-46279414 None:intergenic 45.0%
TGCTTTACTTGGGCAGAACA+AGG - chr8_3:46279400-46279419 Msa1291040:CDS 45.0%
ATCAACAGGTAAGGCAGCAA+TGG + chr8_3:46279432-46279451 None:intergenic 45.0%
! TCACAGCATAGAAGCATACC+AGG + chr8_3:46279494-46279513 None:intergenic 45.0%
TTGTGAAACGGTTGCAAGCT+AGG - chr8_3:46279627-46279646 Msa1291040:CDS 45.0%
ATTTGTGGGATGACTGGTGA+TGG - chr8_3:46279656-46279675 Msa1291040:CDS 45.0%
TGATGGAGTGAATGATGCAC+CGG - chr8_3:46279673-46279692 Msa1291040:CDS 45.0%
!! ATGTCTGCCTTTTTGAGAGC+CGG + chr8_3:46279695-46279714 None:intergenic 45.0%
GCTCTCAAAAAGGCAGACAT+TGG - chr8_3:46279695-46279714 Msa1291040:CDS 45.0%
TGCATCAGTAGCATCTGCAA+CGG + chr8_3:46279726-46279745 None:intergenic 45.0%
! TCTTTGAAAGATAGCTCGGC+TGG + chr8_3:46279816-46279835 None:intergenic 45.0%
TAAAACAACAGTGCCGTGTC+AGG + chr8_3:46280052-46280071 None:intergenic 45.0%
! CATACTGCAAGAGTACAAGC+AGG + chr8_3:46280246-46280265 None:intergenic 45.0%
TCCAGATAGCTGGAAGCTAT+CGG - chr8_3:46280365-46280384 Msa1291040:intron 45.0%
!! TTTACTACCGGTGTTGTGCT+TGG - chr8_3:46280393-46280412 Msa1291040:intron 45.0%
GTAACTACCAAGCACAACAC+CGG + chr8_3:46280403-46280422 None:intergenic 45.0%
GAGTTCGTGGAAAACATACC+GGG + chr8_3:46280479-46280498 None:intergenic 45.0%
!!! GCCTTTTGATTGTTTTGGGC+GGG - chr8_3:46280686-46280705 Msa1291040:CDS 45.0%
TTTGCTGCAATCGAAGGGAT+AGG - chr8_3:46281045-46281064 Msa1291040:intron 45.0%
GGGATCTTGTCATTGAGCAA+AGG - chr8_3:46281169-46281188 Msa1291040:CDS 45.0%
TGAGTTTAGCAATCCAAGGC+TGG - chr8_3:46281212-46281231 Msa1291040:CDS 45.0%
! AAGGCAAAAGGACTTTGGGA+AGG - chr8_3:46281285-46281304 Msa1291040:intron 45.0%
! AGGACTTTGGGAAGGAACAA+AGG - chr8_3:46281293-46281312 Msa1291040:intron 45.0%
! GGACTTTGGGAAGGAACAAA+GGG - chr8_3:46281294-46281313 Msa1291040:intron 45.0%
ACACTAAGATGTTCACCGGT+GGG - chr8_3:46281368-46281387 Msa1291040:CDS 45.0%
!! AATTATATGATAAATATAAA+CGG + chr8_3:46277157-46277176 None:intergenic 5.0%
AGGTTCTTCGAGATGGTAGG+TGG - chr8_3:46276998-46277017 Msa1291040:three_prime_UTR 50.0%
! TGATGATGTCACCAGGAACC+AGG + chr8_3:46277044-46277063 None:intergenic 50.0%
! CAGATGCACGGCTTCTAGAA+GGG - chr8_3:46277091-46277110 Msa1291040:CDS 50.0%
! AGATGCACGGCTTCTAGAAG+GGG - chr8_3:46277092-46277111 Msa1291040:CDS 50.0%
CCAGAATACACACCATCACC+AGG + chr8_3:46277291-46277310 None:intergenic 50.0%
!! CCTGGTGATGGTGTGTATTC+TGG - chr8_3:46277288-46277307 Msa1291040:intron 50.0%
ACAAGGAGAGATTGAAGGCG+TGG - chr8_3:46277323-46277342 Msa1291040:intron 50.0%
! GAAGGCGTGGTTATAGCTAC+TGG - chr8_3:46277336-46277355 Msa1291040:intron 50.0%
CACTGACAAAACAGTGGGCA+TGG + chr8_3:46277689-46277708 None:intergenic 50.0%
TTGTCAGTGACCATGGCGAT+AGG - chr8_3:46277700-46277719 Msa1291040:CDS 50.0%
GAAGAGTCTAACTGACCTGC+TGG + chr8_3:46277741-46277760 None:intergenic 50.0%
TTCGATGTGAGCACTACCGT+TGG - chr8_3:46277758-46277777 Msa1291040:CDS 50.0%
TGCACTAGTCAGTCCACCAA+CGG + chr8_3:46277777-46277796 None:intergenic 50.0%
ACAGCCATTGAAGAGATGGC+AGG - chr8_3:46277850-46277869 Msa1291040:intron 50.0%
CATGCCTGCCATCTCTTCAA+TGG + chr8_3:46277857-46277876 None:intergenic 50.0%
CATTGAAGAGATGGCAGGCA+TGG - chr8_3:46277855-46277874 Msa1291040:intron 50.0%
TCGAGCCGCCATCAAAACAA+CGG + chr8_3:46278070-46278089 None:intergenic 50.0%
TACTGCCATAGTTGGGATGC+TGG - chr8_3:46278122-46278141 Msa1291040:intron 50.0%
ATCAGCCAGCATCCCAACTA+TGG + chr8_3:46278130-46278149 None:intergenic 50.0%
TGTATACCAGCACGTGCCTA+TGG + chr8_3:46278275-46278294 None:intergenic 50.0%
CGCTTATCCGTCGGATTGAA+AGG + chr8_3:46278314-46278333 None:intergenic 50.0%
! AAGCAAAGGTGCACCAGAAC+AGG - chr8_3:46278379-46278398 Msa1291040:intron 50.0%
TCGGCACTATCATGTCTTGG+AGG + chr8_3:46278774-46278793 None:intergenic 50.0%
! ATAGTGCCGAAACCATACGG+AGG - chr8_3:46278784-46278803 Msa1291040:intron 50.0%
! TAGTGCCGAAACCATACGGA+GGG - chr8_3:46278785-46278804 Msa1291040:intron 50.0%
TAGTGCCCTCCGTATGGTTT+CGG + chr8_3:46278793-46278812 None:intergenic 50.0%
AAGGTTTAGTGCCCTCCGTA+TGG + chr8_3:46278799-46278818 None:intergenic 50.0%
!! ATACGGAGGGCACTAAACCT+TGG - chr8_3:46278798-46278817 Msa1291040:intron 50.0%
TTGGCTATGTGAGGAAGAGG+AGG + chr8_3:46278967-46278986 None:intergenic 50.0%
AGCTAGCTGATCCCCTGATA+AGG + chr8_3:46279324-46279343 None:intergenic 50.0%
TCAGGGGATCAGCTAGCTAT+CGG - chr8_3:46279326-46279345 Msa1291040:CDS 50.0%
GGATCAGCTAGCTATCGGAA+AGG - chr8_3:46279331-46279350 Msa1291040:CDS 50.0%
TGTTGGTACCCATTCCCAAG+CGG + chr8_3:46279367-46279386 None:intergenic 50.0%
!! GAGAAAGCTGATGGGTTTGC+TGG - chr8_3:46279461-46279480 Msa1291040:intron 50.0%
!! GGGTTTGCTGGTGTATTTCC+TGG - chr8_3:46279473-46279492 Msa1291040:intron 50.0%
!! TGATGCACCGGCTCTCAAAA+AGG - chr8_3:46279685-46279704 Msa1291040:CDS 50.0%
ACAGCTTGGCTTCATGTTGC+TGG - chr8_3:46280126-46280145 Msa1291040:intron 50.0%
CAGCTATCTGGAAGAGGTGA+TGG + chr8_3:46280357-46280376 None:intergenic 50.0%
CATCACCTCTTCCAGATAGC+TGG - chr8_3:46280355-46280374 Msa1291040:intron 50.0%
AGCTTCCAGCTATCTGGAAG+AGG + chr8_3:46280363-46280382 None:intergenic 50.0%
TCCGATAGCTTCCAGCTATC+TGG + chr8_3:46280369-46280388 None:intergenic 50.0%
GCCCGCCCAAAACAATCAAA+AGG + chr8_3:46280690-46280709 None:intergenic 50.0%
TTGTAACTCGATCTCGAGGC+TGG - chr8_3:46280847-46280866 Msa1291040:intron 50.0%
TGGTCATATGTTGAGCGTCC+CGG - chr8_3:46280867-46280886 Msa1291040:intron 50.0%
GCAGCAACCAGCAATAAACC+GGG + chr8_3:46280888-46280907 None:intergenic 50.0%
GGCAGCAACCAGCAATAAAC+CGG + chr8_3:46280889-46280908 None:intergenic 50.0%
TGGAGCTTTGCTGCAATCGA+AGG - chr8_3:46281039-46281058 Msa1291040:intron 50.0%
GGAGCTTTGCTGCAATCGAA+GGG - chr8_3:46281040-46281059 Msa1291040:intron 50.0%
TGCAATCGAAGGGATAGGCT+GGG - chr8_3:46281050-46281069 Msa1291040:intron 50.0%
! ATGCTTTGAGTGGGAGAGCT+TGG - chr8_3:46281148-46281167 Msa1291040:CDS 50.0%
! TGCTTTGAGTGGGAGAGCTT+GGG - chr8_3:46281149-46281168 Msa1291040:CDS 50.0%
CATGCACAAAGAACCCTGCA+TGG - chr8_3:46281331-46281350 Msa1291040:CDS 50.0%
CGGAGGTTGTAATCCATGCA+GGG + chr8_3:46281347-46281366 None:intergenic 50.0%
! CCTGCATGGATTACAACCTC+CGG - chr8_3:46281345-46281364 Msa1291040:CDS 50.0%
GTGAACATCTTAGTGTCCGG+AGG + chr8_3:46281364-46281383 None:intergenic 50.0%
CCGGTGAACATCTTAGTGTC+CGG + chr8_3:46281367-46281386 None:intergenic 50.0%
CCGGACACTAAGATGTTCAC+CGG - chr8_3:46281364-46281383 Msa1291040:CDS 50.0%
GACACTAAGATGTTCACCGG+TGG - chr8_3:46281367-46281386 Msa1291040:CDS 50.0%
TTCAGTGACATGTGTCCCAC+CGG + chr8_3:46281386-46281405 None:intergenic 50.0%
!! CTTAGCTTTTGGCGCGAGAC+GGG + chr8_3:46276833-46276852 None:intergenic 55.0%
!! CCTTAGCTTTTGGCGCGAGA+CGG + chr8_3:46276834-46276853 None:intergenic 55.0%
TCTAGAAGCCGTGCATCTGC+TGG + chr8_3:46277090-46277109 None:intergenic 55.0%
GCAGATGCACGGCTTCTAGA+AGG - chr8_3:46277090-46277109 Msa1291040:CDS 55.0%
GAGTCCCTGCCAGTGACAAA+AGG - chr8_3:46277264-46277283 Msa1291040:intron 55.0%
! AGGGCCTTTTGTCACTGGCA+GGG + chr8_3:46277271-46277290 None:intergenic 55.0%
! TCACCAGGGCCTTTTGTCAC+TGG + chr8_3:46277276-46277295 None:intergenic 55.0%
GTGACAAAAGGCCCTGGTGA+TGG - chr8_3:46277276-46277295 Msa1291040:intron 55.0%
CAACATCGACGCTATCGTCC+TGG - chr8_3:46277619-46277638 Msa1291040:CDS 55.0%
CCTGTGTGATCCTATCGCCA+TGG + chr8_3:46277713-46277732 None:intergenic 55.0%
CCATGGCGATAGGATCACAC+AGG - chr8_3:46277710-46277729 Msa1291040:CDS 55.0%
ATCACACAGGCTATCCCAGC+AGG - chr8_3:46277723-46277742 Msa1291040:CDS 55.0%
GATGTGAGCACTACCGTTGG+TGG - chr8_3:46277761-46277780 Msa1291040:CDS 55.0%
! TGGGATGCTGGCTGATCCAA+AGG - chr8_3:46278134-46278153 Msa1291040:intron 55.0%
! GATGCTGGCTGATCCAAAGG+AGG - chr8_3:46278137-46278156 Msa1291040:intron 55.0%
TTGCTACCATAGGCACGTGC+TGG - chr8_3:46278266-46278285 Msa1291040:CDS 55.0%
CAATCCGACGGATAAGCGCA+CGG - chr8_3:46278316-46278335 Msa1291040:intron 55.0%
AATGCCGTGCGCTTATCCGT+CGG + chr8_3:46278323-46278342 None:intergenic 55.0%
AAAGGAAACAGGTCGCCGCT+TGG - chr8_3:46279349-46279368 Msa1291040:CDS 55.0%
AAGGAAACAGGTCGCCGCTT+GGG - chr8_3:46279350-46279369 Msa1291040:CDS 55.0%
TGAGCGTCCCGGTTTATTGC+TGG - chr8_3:46280878-46280897 Msa1291040:intron 55.0%
CTGCAATCGAAGGGATAGGC+TGG - chr8_3:46281049-46281068 Msa1291040:intron 55.0%
GCAATCGAAGGGATAGGCTG+GGG - chr8_3:46281051-46281070 Msa1291040:intron 55.0%
!! GGGGTTGGGCTGGTGTTATA+TGG - chr8_3:46281070-46281089 Msa1291040:intron 55.0%
CCGGAGGTTGTAATCCATGC+AGG + chr8_3:46281348-46281367 None:intergenic 55.0%
CCGTCTCGCGCCAAAAGCTA+AGG - chr8_3:46276831-46276850 Msa1291040:three_prime_UTR 60.0%
TGAGCAAGATGCCGCGATCC+TGG - chr8_3:46277023-46277042 Msa1291040:exon 60.0%
GTCACCAGGAACCAGGATCG+CGG + chr8_3:46277037-46277056 None:intergenic 60.0%
! CAGGGCCTTTTGTCACTGGC+AGG + chr8_3:46277272-46277291 None:intergenic 60.0%
CTGCCAGTGACAAAAGGCCC+TGG - chr8_3:46277270-46277289 Msa1291040:intron 60.0%
TGCAGGGGGCTATCACGAAG+AGG - chr8_3:46277824-46277843 Msa1291040:intron 60.0%
!! TGATGGCGGCTCGAGCTTCA+AGG - chr8_3:46278076-46278095 Msa1291040:intron 60.0%
AACAGGTCGCCGCTTGGGAA+TGG - chr8_3:46279355-46279374 Msa1291040:CDS 60.0%
ACAGGTCGCCGCTTGGGAAT+GGG - chr8_3:46279356-46279375 Msa1291040:CDS 60.0%
TCGAAGGGATAGGCTGGGGT+TGG - chr8_3:46281055-46281074 Msa1291040:intron 60.0%
CGAAGGGATAGGCTGGGGTT+GGG - chr8_3:46281056-46281075 Msa1291040:intron 60.0%
GATGCCGCGATCCTGGTTCC+TGG - chr8_3:46277030-46277049 Msa1291040:exon 65.0%
GGGATAGGCTGGGGTTGGGC+TGG - chr8_3:46281060-46281079 Msa1291040:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 46276818 46282247 46276818 ID=Msa1291040;Name=Msa1291040
chr8_3 mRNA 46276818 46282247 46276818 ID=Msa1291040-mRNA-1;Parent=Msa1291040;Name=Msa1291040-mRNA-1;_AED=0.16;_eAED=0.16;_QI=8|1|1|1|1|1|18|219|828
chr8_3 exon 46276818 46277133 46276818 ID=Msa1291040-mRNA-1:exon:12783;Parent=Msa1291040-mRNA-1
chr8_3 exon 46277613 46277791 46277613 ID=Msa1291040-mRNA-1:exon:12782;Parent=Msa1291040-mRNA-1
chr8_3 exon 46277874 46278056 46277874 ID=Msa1291040-mRNA-1:exon:12781;Parent=Msa1291040-mRNA-1
chr8_3 exon 46278139 46278324 46278139 ID=Msa1291040-mRNA-1:exon:12780;Parent=Msa1291040-mRNA-1
chr8_3 exon 46278586 46278746 46278586 ID=Msa1291040-mRNA-1:exon:12779;Parent=Msa1291040-mRNA-1
chr8_3 exon 46278854 46278935 46278854 ID=Msa1291040-mRNA-1:exon:12778;Parent=Msa1291040-mRNA-1
chr8_3 exon 46279056 46279088 46279056 ID=Msa1291040-mRNA-1:exon:12777;Parent=Msa1291040-mRNA-1
chr8_3 exon 46279215 46279453 46279215 ID=Msa1291040-mRNA-1:exon:12776;Parent=Msa1291040-mRNA-1
chr8_3 exon 46279571 46279735 46279571 ID=Msa1291040-mRNA-1:exon:12775;Parent=Msa1291040-mRNA-1
chr8_3 exon 46280222 46280366 46280222 ID=Msa1291040-mRNA-1:exon:12774;Parent=Msa1291040-mRNA-1
chr8_3 exon 46280471 46280575 46280471 ID=Msa1291040-mRNA-1:exon:12773;Parent=Msa1291040-mRNA-1
chr8_3 exon 46280665 46280787 46280665 ID=Msa1291040-mRNA-1:exon:12772;Parent=Msa1291040-mRNA-1
chr8_3 exon 46280907 46281026 46280907 ID=Msa1291040-mRNA-1:exon:12771;Parent=Msa1291040-mRNA-1
chr8_3 exon 46281117 46281236 46281117 ID=Msa1291040-mRNA-1:exon:12770;Parent=Msa1291040-mRNA-1
chr8_3 exon 46281321 46281527 46281321 ID=Msa1291040-mRNA-1:exon:12769;Parent=Msa1291040-mRNA-1
chr8_3 exon 46281637 46281816 46281637 ID=Msa1291040-mRNA-1:exon:12768;Parent=Msa1291040-mRNA-1
chr8_3 exon 46281931 46282065 46281931 ID=Msa1291040-mRNA-1:exon:12767;Parent=Msa1291040-mRNA-1
chr8_3 exon 46282213 46282247 46282213 ID=Msa1291040-mRNA-1:exon:12766;Parent=Msa1291040-mRNA-1
chr8_3 five_prime_UTR 46282240 46282247 46282240 ID=Msa1291040-mRNA-1:five_prime_utr;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46282213 46282239 46282213 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46281931 46282065 46281931 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46281637 46281816 46281637 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46281321 46281527 46281321 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46281117 46281236 46281117 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46280907 46281026 46280907 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46280665 46280787 46280665 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46280471 46280575 46280471 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46280222 46280366 46280222 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46279571 46279735 46279571 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46279215 46279453 46279215 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46279056 46279088 46279056 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46278854 46278935 46278854 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46278586 46278746 46278586 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46278139 46278324 46278139 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46277874 46278056 46277874 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46277613 46277791 46277613 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 CDS 46277037 46277133 46277037 ID=Msa1291040-mRNA-1:cds;Parent=Msa1291040-mRNA-1
chr8_3 three_prime_UTR 46276818 46277036 46276818 ID=Msa1291040-mRNA-1:three_prime_utr;Parent=Msa1291040-mRNA-1
Gene Sequence

>Msa1291040

ATGGCCCGTCTCGCGCCAAAAGCTAAGGTTCTTCGAGATGGTAGGTGGAATGAGCAAGATGCCGCGATCCTGGTTCCTGGTGACATCATCAGTATCAAACTTGGAGATATTGTTCCAGCAGATGCACGGCTTCTAGAAGGGGATCCGTTGAAAATCGATCAGTCTGCACTCACAGGTGAGTCCCTGCCAGTGACAAAAGGCCCTGGTGATGGTGTGTATTCTGGTTCTACCTGCAAACAAGGAGAGATTGAAGGCGTGGTTATAGCTACTGGTGTTCATACCTTTTTCGGTAAAGCTGCTCACCTTGTTGATACTACAAATCAAGTTGGTCACTTCCAACAGGTCTTGACTGCAATTGGGAACTTCTGCATATGTTCGATTGCTGTGGGAATGCTTGTCGAGCTTATTGTTATGTATCCTATTCAACATCGACGCTATCGTCCTGGAATCGATAACCTCCTTGTGCTTCTTATTGGAGGAATTCCAATTGCCATGCCCACTGTTTTGTCAGTGACCATGGCGATAGGATCACACAGGCTATCCCAGCAGGGGGCTATCACGAAGAGGATGACAGCCATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGAACTCTAACATTAAATAAGCTTACCGTTGACAAAAATCTTGTTGAGGTTTTTGCAAAAGGAGTGGATGCTGATGCCGTTGTTTTGATGGCGGCTCGAGCTTCAAGGCTTGAGAATCAAGATGCAATAGATACTGCCATAGTTGGGATGCTGGCTGATCCAAAGGAGGCACGTGCTGGTATACAAGAAGTACATTTTCTTCCTTTCAATCCGACGGATAAGCGCACGGCATTGACTTATATTGATCAAGAGGGTAAAATGCATAGAGTAAGCAAAGGTGCACCAGAACAGATCCTAAATCTGGCACACGATAAGACAAACATTGAACGAAGAGTTCACTCAGTAATAGACAAGTTTGCAGAGCGTGGCTTACGATCTCTTGCTGTAGCATACCAAGAAGTTCCTGATGGAAGGAAAGAAAGTCCTGGAACTCCATGGCAATTTATTGGACTTATGCCTCTCTTTGATCCTCCAAGACATGATAGTGCCGAAACCATACGGAGGGCACTAAACCTTGGAGTTAATGTCAAAATGATTACAGGGGATCAGCTAGCTATCGGAAAGGAAACAGGTCGCCGCTTGGGAATGGGTACCAACATGTATCCTTCATCTGCTTTACTTGGGCAGAACAAGGATGAATCCATTGCTGCCTTACCTGTTGATGATCTAATTGAGAAAGCTGATGGGTTTGCTGGTGTATTTCCTGAGCACAAATACGAGATTGTGAAACGGTTGCAAGCTAGGAAACACATTTGTGGGATGACTGGTGATGGAGTGAATGATGCACCGGCTCTCAAAAAGGCAGACATTGGTATAGCCGTTGCAGATGCTACTGATGCAGCTCGTAGTGCATCCGATATTGTTTTGACAGAACCTGGCCTCAGTGTTATTATAAGTGCTGTTTTAACCAGCCGAGCTATCTTTCAAAGAATGAAAAATTATACAATTTATGCAGTCTCAATTACAATTCGTATTGTGCTTGGCTTCATGTTGCTGGCTTTGATATGGAAGTTTGATTTTCCACCTTTTATGGTTCTTATTATTGCTATCCTAAACGATGGTACTATCATGACAATTTCAAAAGATAGGGTAAAACCATCACCTCTTCCAGATAGCTGGAAGCTATCGGAGATATTTACTACCGGTGTTGTGCTTGGTAGTTACTTGGCAATGATGACGGTTATATTCTTTTGGGTGGCATACAAAACAGATTTCTTCCCGAAAGTGTTTGGAGTTGAGACTCTCGAAAAAACCGCTCACGATGATTTCCGAAAACTTGCCTCTGCAATCTATCTTCAAGTGAGCACTATTAGTCAGGCTCTTATATTTGTAACTCGATCTCGAGGCTGGTCATATGTTGAGCGTCCCGGTTTATTGCTGGTTGCTGCCTTTATCGTCGCTCAACTTATTGCAACTTTGATTGCAGTTTATGCTAGCTGGAGCTTTGCTGCAATCGAAGGGATAGGCTGGGGTTGGGCTGGTGTTATATGGTTATACAACATAATATTCTACATTCCGCTGGATTTCATTAAATTTTTCATTCGCTATGCTTTGAGTGGGAGAGCTTGGGATCTTGTCATTGAGCAAAGGATTGCTTTCACAAGGCAAAAGGACTTTGGGAAGGAACAAAGGGAACTTCAATGGGCACATGCACAAAGAACCCTGCATGGATTACAACCTCCGGACACTAAGATGTTCACCGGTGGGACACATGTCACTGAACTTAATCAAATGGCTGAGGAAGCTAAAAGGAGAGCTGAAATTGCTAGGTTGAGAGAGCTTCATACATTGAAGGGTCATGTAGAATCAGTTGTGAGATTGAAGGGGCTAGACATAGATACCATTCAGCAAGCATACACAGTTTGA
Protein sequence

>Msa1291040

MARLAPKAKVLRDGRWNEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEGVVIATGVHTFFGKAAHLVDTTNQVGHFQQVLTAIGNFCICSIAVGMLVELIVMYPIQHRRYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDADAVVLMAARASRLENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDQEGKMHRVSKGAPEQILNLAHDKTNIERRVHSVIDKFAERGLRSLAVAYQEVPDGRKESPGTPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFTTGVVLGSYLAMMTVIFFWVAYKTDFFPKVFGVETLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVAAFIVAQLIATLIAVYASWSFAAIEGIGWGWAGVIWLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTGGTHVTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV*