Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291480 | XP_039684623.1 | 82.921 | 404 | 47 | 4 | 5 | 400 | 69 | 458 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291480 | A0A396GJZ6 | 82.921 | 404 | 47 | 4 | 5 | 400 | 69 | 458 | 0.0 | 650 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1201430 | Msa1291480 | 0.806395 | 8.399286e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291480 | MtrunA17_Chr8g0366011 | 82.921 | 404 | 47 | 4 | 5 | 400 | 69 | 458 | 0.0 | 650 |
| Msa1291480 | MtrunA17_Chr8g0365981 | 82.178 | 404 | 50 | 4 | 5 | 400 | 6 | 395 | 0.0 | 646 |
| Msa1291480 | MtrunA17_Chr6g0448941 | 68.990 | 287 | 82 | 3 | 121 | 400 | 1 | 287 | 1.38e-134 | 387 |
| Msa1291480 | MtrunA17_Chr8g0346811 | 50.139 | 361 | 158 | 7 | 56 | 400 | 48 | 402 | 2.72e-110 | 329 |
| Msa1291480 | MtrunA17_Chr5g0396841 | 46.505 | 372 | 170 | 11 | 48 | 400 | 7 | 368 | 4.13e-93 | 284 |
| Msa1291480 | MtrunA17_Chr8g0346881 | 41.363 | 411 | 193 | 12 | 18 | 399 | 2 | 393 | 1.57e-87 | 270 |
| Msa1291480 | MtrunA17_Chr5g0442711 | 39.031 | 351 | 150 | 13 | 15 | 340 | 33 | 344 | 1.58e-59 | 197 |
| Msa1291480 | MtrunA17_Chr5g0398931 | 46.277 | 188 | 96 | 3 | 170 | 354 | 5 | 190 | 3.03e-50 | 168 |
| Msa1291480 | MtrunA17_Chr8g0346821 | 42.788 | 208 | 90 | 4 | 197 | 400 | 11 | 193 | 7.56e-43 | 148 |
| Msa1291480 | MtrunA17_Chr8g0357031 | 45.455 | 209 | 95 | 6 | 48 | 240 | 19 | 224 | 4.52e-42 | 147 |
| Msa1291480 | MtrunA17_Chr1g0152331 | 44.385 | 187 | 90 | 4 | 46 | 218 | 18 | 204 | 8.22e-40 | 141 |
| Msa1291480 | MtrunA17_Chr1g0152321 | 50.382 | 131 | 48 | 4 | 274 | 400 | 24 | 141 | 3.30e-36 | 129 |
| Msa1291480 | MtrunA17_Chr5g0399631 | 48.062 | 129 | 55 | 4 | 276 | 399 | 1 | 122 | 3.71e-33 | 120 |
| Msa1291480 | MtrunA17_Chr3g0086361 | 47.917 | 144 | 66 | 6 | 101 | 237 | 5 | 146 | 8.10e-31 | 115 |
| Msa1291480 | MtrunA17_Chr1g0204991 | 44.444 | 144 | 72 | 5 | 101 | 237 | 54 | 196 | 2.77e-27 | 107 |
| Msa1291480 | MtrunA17_Chr5g0399621 | 40.000 | 155 | 70 | 6 | 4 | 141 | 6 | 154 | 6.20e-21 | 88.6 |
| Msa1291480 | MtrunA17_Chr8g0346851 | 44.681 | 94 | 47 | 1 | 307 | 400 | 1 | 89 | 5.13e-20 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAGGAGTGGGATAAAT+TGG | 0.212367 | 8_3:-46859285 | None:intergenic |
| CTGTTACGAACAACTTGAAT+TGG | 0.248945 | 8_3:-46859356 | None:intergenic |
| TTATGGAAACCTGTTTATAA+TGG | 0.296486 | 8_3:+46859495 | Msa1291480:CDS |
| GTTGACAGGGAAATTCTTAT+AGG | 0.327370 | 8_3:+46859567 | Msa1291480:CDS |
| TGTGATCAACTCCAATTCTT+AGG | 0.331222 | 8_3:-46859422 | None:intergenic |
| GGATGGGAGATCGTCTTTCT+TGG | 0.337678 | 8_3:+46859646 | Msa1291480:CDS |
| TAATGGGTGGTGGAGTTAAA+AGG | 0.341615 | 8_3:+46858821 | None:intergenic |
| TAAGTGTTGTAAAGAAAATT+TGG | 0.343686 | 8_3:-46859836 | None:intergenic |
| ATGGAGAAAATCATATCTAT+TGG | 0.349579 | 8_3:+46859514 | Msa1291480:CDS |
| GGCTACTTGCGGCCACAAAC+TGG | 0.365631 | 8_3:+46859761 | Msa1291480:CDS |
| AATGGACAAAAGATTCATTT+CGG | 0.371410 | 8_3:+46859147 | Msa1291480:CDS |
| CAAGTAATCGTAATCGTAAT+CGG | 0.381178 | 8_3:+46858932 | Msa1291480:CDS |
| TCAAGCCTGAAAATCCATTT+CGG | 0.391889 | 8_3:-46859875 | None:intergenic |
| CAACTTGAATTGGGCAGTGT+TGG | 0.407510 | 8_3:-46859346 | None:intergenic |
| AATAGCAGTAAACCAATGTT+TGG | 0.409082 | 8_3:-46859040 | None:intergenic |
| TAGCTATCAAATCTATACTT+TGG | 0.410411 | 8_3:+46859683 | Msa1291480:CDS |
| GATCGTCTTTCTTGGATTCA+AGG | 0.425488 | 8_3:+46859654 | Msa1291480:CDS |
| AACTTGAATTGGGCAGTGTT+GGG | 0.432328 | 8_3:-46859345 | None:intergenic |
| TATTGTCAAAATCCAGTTTG+TGG | 0.438830 | 8_3:-46859773 | None:intergenic |
| ACCAGTAAATTCTCCTCTGT+GGG | 0.441044 | 8_3:+46859611 | Msa1291480:CDS |
| TCTAGCTATGTTGGAGCACT+TGG | 0.452526 | 8_3:-46860008 | None:intergenic |
| CCCCACAGAGGAGAATTTAC+TGG | 0.453788 | 8_3:-46859612 | None:intergenic |
| ATTTATCCCACTCCTTCAAA+AGG | 0.457276 | 8_3:+46859288 | Msa1291480:CDS |
| CATTGCAGTGGGCAATTATG+AGG | 0.466877 | 8_3:+46859953 | Msa1291480:CDS |
| TTTGTCCATTGACATGATCT+AGG | 0.473356 | 8_3:-46859134 | None:intergenic |
| CAAGTAGCCCCGTAATCAAA+AGG | 0.474464 | 8_3:-46859747 | None:intergenic |
| ACCAGGAAATCTAGCTATGT+TGG | 0.477116 | 8_3:-46860017 | None:intergenic |
| GATATTTATAACGTAGAGAC+CGG | 0.480845 | 8_3:-46859088 | None:intergenic |
| ATGGAATCTTTATCATGAGA+TGG | 0.481645 | 8_3:+46859722 | Msa1291480:CDS |
| TTAAAGCAGGACTTAAGGAT+AGG | 0.486633 | 8_3:-46859258 | None:intergenic |
| ACTTTATTGGATTCATGTCA+TGG | 0.490664 | 8_3:+46859189 | Msa1291480:CDS |
| TACGTTATAAATATCAAGTC+GGG | 0.490829 | 8_3:+46859096 | Msa1291480:CDS |
| TGTTACGAACAACTTGAATT+GGG | 0.498389 | 8_3:-46859355 | None:intergenic |
| GGAGAATTTACTGGTGGAGG+GGG | 0.508943 | 8_3:-46859603 | None:intergenic |
| TAAAGCAGGACTTAAGGATA+GGG | 0.512246 | 8_3:-46859257 | None:intergenic |
| ACAGATGTTCTAAATGTTGA+GGG | 0.517825 | 8_3:+46859375 | Msa1291480:CDS |
| CACCAGTAAATTCTCCTCTG+TGG | 0.522553 | 8_3:+46859610 | Msa1291480:CDS |
| TACTTCCTAGATCATGTCAA+TGG | 0.525257 | 8_3:+46859129 | Msa1291480:CDS |
| TTATTGTGATGGATGTTGAC+AGG | 0.526666 | 8_3:+46859553 | Msa1291480:CDS |
| AACAGATGTTCTAAATGTTG+AGG | 0.528904 | 8_3:+46859374 | Msa1291480:CDS |
| GATATAATTATAATGGGTGG+TGG | 0.531666 | 8_3:+46858811 | None:intergenic |
| AGAGGAGAATTTACTGGTGG+AGG | 0.532452 | 8_3:-46859606 | None:intergenic |
| ACTGTTTACTTAACTCTGCA+AGG | 0.534743 | 8_3:+46859010 | Msa1291480:CDS |
| TGGAATCTTTATCATGAGAT+GGG | 0.538686 | 8_3:+46859723 | Msa1291480:CDS |
| CAGTAAATTCTCCTCTGTGG+GGG | 0.544105 | 8_3:+46859613 | Msa1291480:CDS |
| GAGAATTTACTGGTGGAGGG+GGG | 0.544529 | 8_3:-46859602 | None:intergenic |
| CAGTGGGCAATTATGAGGCA+TGG | 0.547228 | 8_3:+46859958 | Msa1291480:CDS |
| GACCGGGTGGTTTAAGACGC+AGG | 0.548258 | 8_3:-46859071 | None:intergenic |
| ATAGCAAGCATCACGTCTTG+AGG | 0.548834 | 8_3:-46858967 | None:intergenic |
| ATCTATTGGATAACAAGTGA+TGG | 0.552981 | 8_3:+46859528 | Msa1291480:CDS |
| GCATATTACTGCTTTGTAGA+GGG | 0.553540 | 8_3:+46859211 | Msa1291480:CDS |
| GGCATATTACTGCTTTGTAG+AGG | 0.558158 | 8_3:+46859210 | Msa1291480:CDS |
| GGGTGGTTTAAGACGCAGGC+AGG | 0.560455 | 8_3:-46859067 | None:intergenic |
| AAAATTGATGGCATTGCAGT+GGG | 0.561648 | 8_3:+46859942 | Msa1291480:CDS |
| AGTAAATTCTCCTCTGTGGG+GGG | 0.562843 | 8_3:+46859614 | Msa1291480:CDS |
| CAAGGTATGTCTCCAAACAT+TGG | 0.566955 | 8_3:+46859028 | Msa1291480:CDS |
| GAGGAGAATTTACTGGTGGA+GGG | 0.567789 | 8_3:-46859605 | None:intergenic |
| GGTTTAAGACGCAGGCAGGA+TGG | 0.573461 | 8_3:-46859063 | None:intergenic |
| TAGCAAGCATCACGTCTTGA+GGG | 0.578183 | 8_3:-46858966 | None:intergenic |
| TTTGATTACGGGGCTACTTG+CGG | 0.593866 | 8_3:+46859750 | Msa1291480:CDS |
| TGGCAACAAAACTAGAGTGT+TGG | 0.594641 | 8_3:-46859988 | None:intergenic |
| GAATTGGAGTTGATCACACA+TGG | 0.596951 | 8_3:+46859427 | Msa1291480:CDS |
| CTACGTTATAAATATCAAGT+CGG | 0.601531 | 8_3:+46859095 | Msa1291480:CDS |
| GAGTTAAGTAAACAGTCAAG+AGG | 0.611980 | 8_3:-46859003 | None:intergenic |
| GTAGATATAATTATAATGGG+TGG | 0.619114 | 8_3:+46858808 | None:intergenic |
| CCAGTAAATTCTCCTCTGTG+GGG | 0.619819 | 8_3:+46859612 | Msa1291480:CDS |
| TGCCTGCGTCTTAAACCACC+CGG | 0.633965 | 8_3:+46859069 | Msa1291480:CDS |
| AAGTGATGGAGTTATTGTGA+TGG | 0.649160 | 8_3:+46859542 | Msa1291480:CDS |
| AGATGTTCTAAATGTTGAGG+GGG | 0.649992 | 8_3:+46859377 | Msa1291480:CDS |
| AGGAGAATTTACTGGTGGAG+GGG | 0.653508 | 8_3:-46859604 | None:intergenic |
| ATATTTATAACGTAGAGACC+GGG | 0.661625 | 8_3:-46859087 | None:intergenic |
| TATTGTGATGGATGTTGACA+GGG | 0.664460 | 8_3:+46859554 | Msa1291480:CDS |
| CAGATGTTCTAAATGTTGAG+GGG | 0.666587 | 8_3:+46859376 | Msa1291480:CDS |
| CACAGAGGAGAATTTACTGG+TGG | 0.672368 | 8_3:-46859609 | None:intergenic |
| AGTCAAGAGGAACTAAACAA+AGG | 0.684557 | 8_3:-46858990 | None:intergenic |
| AATTGGAGTTGATCACACAT+GGG | 0.713881 | 8_3:+46859428 | Msa1291480:CDS |
| TTTATAACGTAGAGACCGGG+TGG | 0.718878 | 8_3:-46859084 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTGGAATTTTAAAGC+AGG | - | chr8_3:46859274-46859293 | None:intergenic | 20.0% |
| !!! | TCCTTGACTTTAAATTTTTA+TGG | + | chr8_3:46859478-46859497 | Msa1291480:CDS | 20.0% |
| !!! | TCCATAAAAATTTAAAGTCA+AGG | - | chr8_3:46859482-46859501 | None:intergenic | 20.0% |
| !!! | TATACTTTGGATTTTGATTT+AGG | + | chr8_3:46859696-46859715 | Msa1291480:CDS | 20.0% |
| !!! | TAAGTGTTGTAAAGAAAATT+TGG | - | chr8_3:46859839-46859858 | None:intergenic | 20.0% |
| !!! | ATAAATTGGAATTTTAAAGC+AGG | - | chr8_3:46859274-46859293 | None:intergenic | 20.0% |
| !!! | TCCTTGACTTTAAATTTTTA+TGG | + | chr8_3:46859478-46859497 | Msa1291480:CDS | 20.0% |
| !!! | TCCATAAAAATTTAAAGTCA+AGG | - | chr8_3:46859482-46859501 | None:intergenic | 20.0% |
| !!! | TATACTTTGGATTTTGATTT+AGG | + | chr8_3:46859696-46859715 | Msa1291480:CDS | 20.0% |
| !!! | TAAGTGTTGTAAAGAAAATT+TGG | - | chr8_3:46859839-46859858 | None:intergenic | 20.0% |
| ! | CTACGTTATAAATATCAAGT+CGG | + | chr8_3:46859095-46859114 | Msa1291480:CDS | 25.0% |
| ! | TACGTTATAAATATCAAGTC+GGG | + | chr8_3:46859096-46859115 | Msa1291480:CDS | 25.0% |
| ! | AATGGACAAAAGATTCATTT+CGG | + | chr8_3:46859147-46859166 | Msa1291480:CDS | 25.0% |
| ! | TTATGGAAACCTGTTTATAA+TGG | + | chr8_3:46859495-46859514 | Msa1291480:CDS | 25.0% |
| !! | TGATTTTCTCCATTATAAAC+AGG | - | chr8_3:46859507-46859526 | None:intergenic | 25.0% |
| ! | ATGGAGAAAATCATATCTAT+TGG | + | chr8_3:46859514-46859533 | Msa1291480:CDS | 25.0% |
| ! | TAGCTATCAAATCTATACTT+TGG | + | chr8_3:46859683-46859702 | Msa1291480:CDS | 25.0% |
| !!! | TGGATTTTGATTTAGGAAAA+TGG | + | chr8_3:46859703-46859722 | Msa1291480:CDS | 25.0% |
| !!! | GGATTTTGACAATATTACAA+TGG | + | chr8_3:46859782-46859801 | Msa1291480:CDS | 25.0% |
| ! | CTACGTTATAAATATCAAGT+CGG | + | chr8_3:46859095-46859114 | Msa1291480:CDS | 25.0% |
| ! | TACGTTATAAATATCAAGTC+GGG | + | chr8_3:46859096-46859115 | Msa1291480:CDS | 25.0% |
| ! | AATGGACAAAAGATTCATTT+CGG | + | chr8_3:46859147-46859166 | Msa1291480:CDS | 25.0% |
| ! | TTATGGAAACCTGTTTATAA+TGG | + | chr8_3:46859495-46859514 | Msa1291480:CDS | 25.0% |
| !! | TGATTTTCTCCATTATAAAC+AGG | - | chr8_3:46859507-46859526 | None:intergenic | 25.0% |
| ! | ATGGAGAAAATCATATCTAT+TGG | + | chr8_3:46859514-46859533 | Msa1291480:CDS | 25.0% |
| ! | TAGCTATCAAATCTATACTT+TGG | + | chr8_3:46859683-46859702 | Msa1291480:CDS | 25.0% |
| !!! | TGGATTTTGATTTAGGAAAA+TGG | + | chr8_3:46859703-46859722 | Msa1291480:CDS | 25.0% |
| !!! | GGATTTTGACAATATTACAA+TGG | + | chr8_3:46859782-46859801 | Msa1291480:CDS | 25.0% |
| CAAGTAATCGTAATCGTAAT+CGG | + | chr8_3:46858932-46858951 | Msa1291480:CDS | 30.0% | |
| AATAGCAGTAAACCAATGTT+TGG | - | chr8_3:46859043-46859062 | None:intergenic | 30.0% | |
| ATATTTATAACGTAGAGACC+GGG | - | chr8_3:46859090-46859109 | None:intergenic | 30.0% | |
| GATATTTATAACGTAGAGAC+CGG | - | chr8_3:46859091-46859110 | None:intergenic | 30.0% | |
| !! | AATAAAGTGCCCATTTTTGA+AGG | - | chr8_3:46859177-46859196 | None:intergenic | 30.0% |
| TTCAAAAATGGGCACTTTAT+TGG | + | chr8_3:46859176-46859195 | Msa1291480:CDS | 30.0% | |
| ACTTTATTGGATTCATGTCA+TGG | + | chr8_3:46859189-46859208 | Msa1291480:CDS | 30.0% | |
| !!! | GAATTTTAAAGCAGGACTTA+AGG | - | chr8_3:46859266-46859285 | None:intergenic | 30.0% |
| ! | AAACGAATTGATCCTTTTGA+AGG | - | chr8_3:46859303-46859322 | None:intergenic | 30.0% |
| TGTTACGAACAACTTGAATT+GGG | - | chr8_3:46859358-46859377 | None:intergenic | 30.0% | |
| ! | AACAGATGTTCTAAATGTTG+AGG | + | chr8_3:46859374-46859393 | Msa1291480:CDS | 30.0% |
| ! | ACAGATGTTCTAAATGTTGA+GGG | + | chr8_3:46859375-46859394 | Msa1291480:CDS | 30.0% |
| !!! | GTTTTTTACGTCCTAAGAAT+TGG | + | chr8_3:46859411-46859430 | Msa1291480:CDS | 30.0% |
| ATCTATTGGATAACAAGTGA+TGG | + | chr8_3:46859528-46859547 | Msa1291480:CDS | 30.0% | |
| ATGGAATCTTTATCATGAGA+TGG | + | chr8_3:46859722-46859741 | Msa1291480:CDS | 30.0% | |
| TGGAATCTTTATCATGAGAT+GGG | + | chr8_3:46859723-46859742 | Msa1291480:CDS | 30.0% | |
| TATTGTCAAAATCCAGTTTG+TGG | - | chr8_3:46859776-46859795 | None:intergenic | 30.0% | |
| !!! | GAAAATCCATTTCGGTTTTT+TGG | - | chr8_3:46859870-46859889 | None:intergenic | 30.0% |
| !! | AAAAACCGAAATGGATTTTC+AGG | + | chr8_3:46859870-46859889 | Msa1291480:CDS | 30.0% |
| AGACAACTCACAAAAATTGA+TGG | + | chr8_3:46859930-46859949 | Msa1291480:CDS | 30.0% | |
| CAAGTAATCGTAATCGTAAT+CGG | + | chr8_3:46858932-46858951 | Msa1291480:CDS | 30.0% | |
| AATAGCAGTAAACCAATGTT+TGG | - | chr8_3:46859043-46859062 | None:intergenic | 30.0% | |
| ATATTTATAACGTAGAGACC+GGG | - | chr8_3:46859090-46859109 | None:intergenic | 30.0% | |
| GATATTTATAACGTAGAGAC+CGG | - | chr8_3:46859091-46859110 | None:intergenic | 30.0% | |
| !! | AATAAAGTGCCCATTTTTGA+AGG | - | chr8_3:46859177-46859196 | None:intergenic | 30.0% |
| TTCAAAAATGGGCACTTTAT+TGG | + | chr8_3:46859176-46859195 | Msa1291480:CDS | 30.0% | |
| ACTTTATTGGATTCATGTCA+TGG | + | chr8_3:46859189-46859208 | Msa1291480:CDS | 30.0% | |
| !!! | GAATTTTAAAGCAGGACTTA+AGG | - | chr8_3:46859266-46859285 | None:intergenic | 30.0% |
| ! | AAACGAATTGATCCTTTTGA+AGG | - | chr8_3:46859303-46859322 | None:intergenic | 30.0% |
| TGTTACGAACAACTTGAATT+GGG | - | chr8_3:46859358-46859377 | None:intergenic | 30.0% | |
| ! | AACAGATGTTCTAAATGTTG+AGG | + | chr8_3:46859374-46859393 | Msa1291480:CDS | 30.0% |
| ! | ACAGATGTTCTAAATGTTGA+GGG | + | chr8_3:46859375-46859394 | Msa1291480:CDS | 30.0% |
| !!! | GTTTTTTACGTCCTAAGAAT+TGG | + | chr8_3:46859411-46859430 | Msa1291480:CDS | 30.0% |
| ATCTATTGGATAACAAGTGA+TGG | + | chr8_3:46859528-46859547 | Msa1291480:CDS | 30.0% | |
| ATGGAATCTTTATCATGAGA+TGG | + | chr8_3:46859722-46859741 | Msa1291480:CDS | 30.0% | |
| TGGAATCTTTATCATGAGAT+GGG | + | chr8_3:46859723-46859742 | Msa1291480:CDS | 30.0% | |
| TATTGTCAAAATCCAGTTTG+TGG | - | chr8_3:46859776-46859795 | None:intergenic | 30.0% | |
| !!! | GAAAATCCATTTCGGTTTTT+TGG | - | chr8_3:46859870-46859889 | None:intergenic | 30.0% |
| !! | AAAAACCGAAATGGATTTTC+AGG | + | chr8_3:46859870-46859889 | Msa1291480:CDS | 30.0% |
| AGACAACTCACAAAAATTGA+TGG | + | chr8_3:46859930-46859949 | Msa1291480:CDS | 30.0% | |
| AGTCAAGAGGAACTAAACAA+AGG | - | chr8_3:46858993-46859012 | None:intergenic | 35.0% | |
| GAGTTAAGTAAACAGTCAAG+AGG | - | chr8_3:46859006-46859025 | None:intergenic | 35.0% | |
| ACTGTTTACTTAACTCTGCA+AGG | + | chr8_3:46859010-46859029 | Msa1291480:CDS | 35.0% | |
| TACTTCCTAGATCATGTCAA+TGG | + | chr8_3:46859129-46859148 | Msa1291480:CDS | 35.0% | |
| TTTGTCCATTGACATGATCT+AGG | - | chr8_3:46859137-46859156 | None:intergenic | 35.0% | |
| TTTCGGAACACCTTCAAAAA+TGG | + | chr8_3:46859164-46859183 | Msa1291480:CDS | 35.0% | |
| TTCGGAACACCTTCAAAAAT+GGG | + | chr8_3:46859165-46859184 | Msa1291480:CDS | 35.0% | |
| GCATATTACTGCTTTGTAGA+GGG | + | chr8_3:46859211-46859230 | Msa1291480:CDS | 35.0% | |
| TAAAGCAGGACTTAAGGATA+GGG | - | chr8_3:46859260-46859279 | None:intergenic | 35.0% | |
| TTAAAGCAGGACTTAAGGAT+AGG | - | chr8_3:46859261-46859280 | None:intergenic | 35.0% | |
| TTTGAAGGAGTGGGATAAAT+TGG | - | chr8_3:46859288-46859307 | None:intergenic | 35.0% | |
| ATTTATCCCACTCCTTCAAA+AGG | + | chr8_3:46859288-46859307 | Msa1291480:CDS | 35.0% | |
| !! | ATTGATCCTTTTGAAGGAGT+GGG | - | chr8_3:46859297-46859316 | None:intergenic | 35.0% |
| !! | AATTGATCCTTTTGAAGGAG+TGG | - | chr8_3:46859298-46859317 | None:intergenic | 35.0% |
| CTGTTACGAACAACTTGAAT+TGG | - | chr8_3:46859359-46859378 | None:intergenic | 35.0% | |
| ! | CAGATGTTCTAAATGTTGAG+GGG | + | chr8_3:46859376-46859395 | Msa1291480:CDS | 35.0% |
| ! | AGATGTTCTAAATGTTGAGG+GGG | + | chr8_3:46859377-46859396 | Msa1291480:CDS | 35.0% |
| TGTGATCAACTCCAATTCTT+AGG | - | chr8_3:46859425-46859444 | None:intergenic | 35.0% | |
| ! | AATTGGAGTTGATCACACAT+GGG | + | chr8_3:46859428-46859447 | Msa1291480:CDS | 35.0% |
| ! | AAGTGATGGAGTTATTGTGA+TGG | + | chr8_3:46859542-46859561 | Msa1291480:CDS | 35.0% |
| !! | TTATTGTGATGGATGTTGAC+AGG | + | chr8_3:46859553-46859572 | Msa1291480:CDS | 35.0% |
| !! | TATTGTGATGGATGTTGACA+GGG | + | chr8_3:46859554-46859573 | Msa1291480:CDS | 35.0% |
| GTTGACAGGGAAATTCTTAT+AGG | + | chr8_3:46859567-46859586 | Msa1291480:CDS | 35.0% | |
| AATCCACCAAAAAACCGAAA+TGG | + | chr8_3:46859861-46859880 | Msa1291480:CDS | 35.0% | |
| !!! | AATCCATTTCGGTTTTTTGG+TGG | - | chr8_3:46859867-46859886 | None:intergenic | 35.0% |
| TCAAGCCTGAAAATCCATTT+CGG | - | chr8_3:46859878-46859897 | None:intergenic | 35.0% | |
| ! | AAAAATTGATGGCATTGCAG+TGG | + | chr8_3:46859941-46859960 | Msa1291480:CDS | 35.0% |
| ! | AAAATTGATGGCATTGCAGT+GGG | + | chr8_3:46859942-46859961 | Msa1291480:CDS | 35.0% |
| AGTCAAGAGGAACTAAACAA+AGG | - | chr8_3:46858993-46859012 | None:intergenic | 35.0% | |
| GAGTTAAGTAAACAGTCAAG+AGG | - | chr8_3:46859006-46859025 | None:intergenic | 35.0% | |
| ACTGTTTACTTAACTCTGCA+AGG | + | chr8_3:46859010-46859029 | Msa1291480:CDS | 35.0% | |
| TACTTCCTAGATCATGTCAA+TGG | + | chr8_3:46859129-46859148 | Msa1291480:CDS | 35.0% | |
| TTTGTCCATTGACATGATCT+AGG | - | chr8_3:46859137-46859156 | None:intergenic | 35.0% | |
| TTTCGGAACACCTTCAAAAA+TGG | + | chr8_3:46859164-46859183 | Msa1291480:CDS | 35.0% | |
| TTCGGAACACCTTCAAAAAT+GGG | + | chr8_3:46859165-46859184 | Msa1291480:CDS | 35.0% | |
| GCATATTACTGCTTTGTAGA+GGG | + | chr8_3:46859211-46859230 | Msa1291480:CDS | 35.0% | |
| TAAAGCAGGACTTAAGGATA+GGG | - | chr8_3:46859260-46859279 | None:intergenic | 35.0% | |
| TTAAAGCAGGACTTAAGGAT+AGG | - | chr8_3:46859261-46859280 | None:intergenic | 35.0% | |
| TTTGAAGGAGTGGGATAAAT+TGG | - | chr8_3:46859288-46859307 | None:intergenic | 35.0% | |
| ATTTATCCCACTCCTTCAAA+AGG | + | chr8_3:46859288-46859307 | Msa1291480:CDS | 35.0% | |
| !! | ATTGATCCTTTTGAAGGAGT+GGG | - | chr8_3:46859297-46859316 | None:intergenic | 35.0% |
| !! | AATTGATCCTTTTGAAGGAG+TGG | - | chr8_3:46859298-46859317 | None:intergenic | 35.0% |
| CTGTTACGAACAACTTGAAT+TGG | - | chr8_3:46859359-46859378 | None:intergenic | 35.0% | |
| ! | CAGATGTTCTAAATGTTGAG+GGG | + | chr8_3:46859376-46859395 | Msa1291480:CDS | 35.0% |
| ! | AGATGTTCTAAATGTTGAGG+GGG | + | chr8_3:46859377-46859396 | Msa1291480:CDS | 35.0% |
| TGTGATCAACTCCAATTCTT+AGG | - | chr8_3:46859425-46859444 | None:intergenic | 35.0% | |
| ! | AATTGGAGTTGATCACACAT+GGG | + | chr8_3:46859428-46859447 | Msa1291480:CDS | 35.0% |
| ! | AAGTGATGGAGTTATTGTGA+TGG | + | chr8_3:46859542-46859561 | Msa1291480:CDS | 35.0% |
| !! | TTATTGTGATGGATGTTGAC+AGG | + | chr8_3:46859553-46859572 | Msa1291480:CDS | 35.0% |
| !! | TATTGTGATGGATGTTGACA+GGG | + | chr8_3:46859554-46859573 | Msa1291480:CDS | 35.0% |
| GTTGACAGGGAAATTCTTAT+AGG | + | chr8_3:46859567-46859586 | Msa1291480:CDS | 35.0% | |
| AATCCACCAAAAAACCGAAA+TGG | + | chr8_3:46859861-46859880 | Msa1291480:CDS | 35.0% | |
| !!! | AATCCATTTCGGTTTTTTGG+TGG | - | chr8_3:46859867-46859886 | None:intergenic | 35.0% |
| TCAAGCCTGAAAATCCATTT+CGG | - | chr8_3:46859878-46859897 | None:intergenic | 35.0% | |
| ! | AAAAATTGATGGCATTGCAG+TGG | + | chr8_3:46859941-46859960 | Msa1291480:CDS | 35.0% |
| ! | AAAATTGATGGCATTGCAGT+GGG | + | chr8_3:46859942-46859961 | Msa1291480:CDS | 35.0% |
| CAAGGTATGTCTCCAAACAT+TGG | + | chr8_3:46859028-46859047 | Msa1291480:CDS | 40.0% | |
| GGCATATTACTGCTTTGTAG+AGG | + | chr8_3:46859210-46859229 | Msa1291480:CDS | 40.0% | |
| AACTTGAATTGGGCAGTGTT+GGG | - | chr8_3:46859348-46859367 | None:intergenic | 40.0% | |
| ! | GAATTGGAGTTGATCACACA+TGG | + | chr8_3:46859427-46859446 | Msa1291480:CDS | 40.0% |
| ACCAGTAAATTCTCCTCTGT+GGG | + | chr8_3:46859611-46859630 | Msa1291480:CDS | 40.0% | |
| GATCGTCTTTCTTGGATTCA+AGG | + | chr8_3:46859654-46859673 | Msa1291480:CDS | 40.0% | |
| !! | GAGATGGGACCTTTTGATTA+CGG | + | chr8_3:46859738-46859757 | Msa1291480:CDS | 40.0% |
| !! | AGATGGGACCTTTTGATTAC+GGG | + | chr8_3:46859739-46859758 | Msa1291480:CDS | 40.0% |
| TGGCAACAAAACTAGAGTGT+TGG | - | chr8_3:46859991-46860010 | None:intergenic | 40.0% | |
| CAAGGTATGTCTCCAAACAT+TGG | + | chr8_3:46859028-46859047 | Msa1291480:CDS | 40.0% | |
| GGCATATTACTGCTTTGTAG+AGG | + | chr8_3:46859210-46859229 | Msa1291480:CDS | 40.0% | |
| AACTTGAATTGGGCAGTGTT+GGG | - | chr8_3:46859348-46859367 | None:intergenic | 40.0% | |
| ! | GAATTGGAGTTGATCACACA+TGG | + | chr8_3:46859427-46859446 | Msa1291480:CDS | 40.0% |
| ACCAGTAAATTCTCCTCTGT+GGG | + | chr8_3:46859611-46859630 | Msa1291480:CDS | 40.0% | |
| GATCGTCTTTCTTGGATTCA+AGG | + | chr8_3:46859654-46859673 | Msa1291480:CDS | 40.0% | |
| !! | GAGATGGGACCTTTTGATTA+CGG | + | chr8_3:46859738-46859757 | Msa1291480:CDS | 40.0% |
| !! | AGATGGGACCTTTTGATTAC+GGG | + | chr8_3:46859739-46859758 | Msa1291480:CDS | 40.0% |
| TGGCAACAAAACTAGAGTGT+TGG | - | chr8_3:46859991-46860010 | None:intergenic | 40.0% | |
| TAGCAAGCATCACGTCTTGA+GGG | - | chr8_3:46858969-46858988 | None:intergenic | 45.0% | |
| ATAGCAAGCATCACGTCTTG+AGG | - | chr8_3:46858970-46858989 | None:intergenic | 45.0% | |
| TTTATAACGTAGAGACCGGG+TGG | - | chr8_3:46859087-46859106 | None:intergenic | 45.0% | |
| CAACTTGAATTGGGCAGTGT+TGG | - | chr8_3:46859349-46859368 | None:intergenic | 45.0% | |
| TAAATGTTGAGGGGGTCGAT+TGG | + | chr8_3:46859385-46859404 | Msa1291480:CDS | 45.0% | |
| AGGAGAATTTACTGGTGGAG+GGG | - | chr8_3:46859607-46859626 | None:intergenic | 45.0% | |
| GAGGAGAATTTACTGGTGGA+GGG | - | chr8_3:46859608-46859627 | None:intergenic | 45.0% | |
| AGAGGAGAATTTACTGGTGG+AGG | - | chr8_3:46859609-46859628 | None:intergenic | 45.0% | |
| CACAGAGGAGAATTTACTGG+TGG | - | chr8_3:46859612-46859631 | None:intergenic | 45.0% | |
| CACCAGTAAATTCTCCTCTG+TGG | + | chr8_3:46859610-46859629 | Msa1291480:CDS | 45.0% | |
| CCAGTAAATTCTCCTCTGTG+GGG | + | chr8_3:46859612-46859631 | Msa1291480:CDS | 45.0% | |
| CAGTAAATTCTCCTCTGTGG+GGG | + | chr8_3:46859613-46859632 | Msa1291480:CDS | 45.0% | |
| AGTAAATTCTCCTCTGTGGG+GGG | + | chr8_3:46859614-46859633 | Msa1291480:CDS | 45.0% | |
| !! | TGGGGGGTTGTTTTATGGAT+GGG | + | chr8_3:46859630-46859649 | Msa1291480:CDS | 45.0% |
| !! | GATGGGACCTTTTGATTACG+GGG | + | chr8_3:46859740-46859759 | Msa1291480:CDS | 45.0% |
| CAAGTAGCCCCGTAATCAAA+AGG | - | chr8_3:46859750-46859769 | None:intergenic | 45.0% | |
| TTTGATTACGGGGCTACTTG+CGG | + | chr8_3:46859750-46859769 | Msa1291480:CDS | 45.0% | |
| ! | TGTGCGCGATTTTTCGTTTC+TGG | + | chr8_3:46859805-46859824 | Msa1291480:CDS | 45.0% |
| CATTGCAGTGGGCAATTATG+AGG | + | chr8_3:46859953-46859972 | Msa1291480:CDS | 45.0% | |
| TAGCAAGCATCACGTCTTGA+GGG | - | chr8_3:46858969-46858988 | None:intergenic | 45.0% | |
| ATAGCAAGCATCACGTCTTG+AGG | - | chr8_3:46858970-46858989 | None:intergenic | 45.0% | |
| TTTATAACGTAGAGACCGGG+TGG | - | chr8_3:46859087-46859106 | None:intergenic | 45.0% | |
| CAACTTGAATTGGGCAGTGT+TGG | - | chr8_3:46859349-46859368 | None:intergenic | 45.0% | |
| TAAATGTTGAGGGGGTCGAT+TGG | + | chr8_3:46859385-46859404 | Msa1291480:CDS | 45.0% | |
| AGGAGAATTTACTGGTGGAG+GGG | - | chr8_3:46859607-46859626 | None:intergenic | 45.0% | |
| GAGGAGAATTTACTGGTGGA+GGG | - | chr8_3:46859608-46859627 | None:intergenic | 45.0% | |
| AGAGGAGAATTTACTGGTGG+AGG | - | chr8_3:46859609-46859628 | None:intergenic | 45.0% | |
| CACAGAGGAGAATTTACTGG+TGG | - | chr8_3:46859612-46859631 | None:intergenic | 45.0% | |
| CACCAGTAAATTCTCCTCTG+TGG | + | chr8_3:46859610-46859629 | Msa1291480:CDS | 45.0% | |
| CCAGTAAATTCTCCTCTGTG+GGG | + | chr8_3:46859612-46859631 | Msa1291480:CDS | 45.0% | |
| CAGTAAATTCTCCTCTGTGG+GGG | + | chr8_3:46859613-46859632 | Msa1291480:CDS | 45.0% | |
| AGTAAATTCTCCTCTGTGGG+GGG | + | chr8_3:46859614-46859633 | Msa1291480:CDS | 45.0% | |
| !! | TGGGGGGTTGTTTTATGGAT+GGG | + | chr8_3:46859630-46859649 | Msa1291480:CDS | 45.0% |
| !! | GATGGGACCTTTTGATTACG+GGG | + | chr8_3:46859740-46859759 | Msa1291480:CDS | 45.0% |
| CAAGTAGCCCCGTAATCAAA+AGG | - | chr8_3:46859750-46859769 | None:intergenic | 45.0% | |
| TTTGATTACGGGGCTACTTG+CGG | + | chr8_3:46859750-46859769 | Msa1291480:CDS | 45.0% | |
| ! | TGTGCGCGATTTTTCGTTTC+TGG | + | chr8_3:46859805-46859824 | Msa1291480:CDS | 45.0% |
| CATTGCAGTGGGCAATTATG+AGG | + | chr8_3:46859953-46859972 | Msa1291480:CDS | 45.0% | |
| GAGAATTTACTGGTGGAGGG+GGG | - | chr8_3:46859605-46859624 | None:intergenic | 50.0% | |
| GGAGAATTTACTGGTGGAGG+GGG | - | chr8_3:46859606-46859625 | None:intergenic | 50.0% | |
| CCCCACAGAGGAGAATTTAC+TGG | - | chr8_3:46859615-46859634 | None:intergenic | 50.0% | |
| CATAAAACAACCCCCCACAG+AGG | - | chr8_3:46859627-46859646 | None:intergenic | 50.0% | |
| !! | CTCTGTGGGGGGTTGTTTTA+TGG | + | chr8_3:46859625-46859644 | Msa1291480:CDS | 50.0% |
| !! | GTGGGGGGTTGTTTTATGGA+TGG | + | chr8_3:46859629-46859648 | Msa1291480:CDS | 50.0% |
| GGATGGGAGATCGTCTTTCT+TGG | + | chr8_3:46859646-46859665 | Msa1291480:CDS | 50.0% | |
| CAGTGGGCAATTATGAGGCA+TGG | + | chr8_3:46859958-46859977 | Msa1291480:CDS | 50.0% | |
| GAGAATTTACTGGTGGAGGG+GGG | - | chr8_3:46859605-46859624 | None:intergenic | 50.0% | |
| GGAGAATTTACTGGTGGAGG+GGG | - | chr8_3:46859606-46859625 | None:intergenic | 50.0% | |
| CCCCACAGAGGAGAATTTAC+TGG | - | chr8_3:46859615-46859634 | None:intergenic | 50.0% | |
| CATAAAACAACCCCCCACAG+AGG | - | chr8_3:46859627-46859646 | None:intergenic | 50.0% | |
| !! | CTCTGTGGGGGGTTGTTTTA+TGG | + | chr8_3:46859625-46859644 | Msa1291480:CDS | 50.0% |
| !! | GTGGGGGGTTGTTTTATGGA+TGG | + | chr8_3:46859629-46859648 | Msa1291480:CDS | 50.0% |
| GGATGGGAGATCGTCTTTCT+TGG | + | chr8_3:46859646-46859665 | Msa1291480:CDS | 50.0% | |
| CAGTGGGCAATTATGAGGCA+TGG | + | chr8_3:46859958-46859977 | Msa1291480:CDS | 50.0% | |
| ! | GGTTTAAGACGCAGGCAGGA+TGG | - | chr8_3:46859066-46859085 | None:intergenic | 55.0% |
| TGCCTGCGTCTTAAACCACC+CGG | + | chr8_3:46859069-46859088 | Msa1291480:CDS | 55.0% | |
| ! | GGTTTAAGACGCAGGCAGGA+TGG | - | chr8_3:46859066-46859085 | None:intergenic | 55.0% |
| TGCCTGCGTCTTAAACCACC+CGG | + | chr8_3:46859069-46859088 | Msa1291480:CDS | 55.0% | |
| ! | GGGTGGTTTAAGACGCAGGC+AGG | - | chr8_3:46859070-46859089 | None:intergenic | 60.0% |
| ! | GACCGGGTGGTTTAAGACGC+AGG | - | chr8_3:46859074-46859093 | None:intergenic | 60.0% |
| TTTACTGGTGGAGGGGGGAG+TGG | - | chr8_3:46859600-46859619 | None:intergenic | 60.0% | |
| GGCTACTTGCGGCCACAAAC+TGG | + | chr8_3:46859761-46859780 | Msa1291480:CDS | 60.0% | |
| ! | GGGTGGTTTAAGACGCAGGC+AGG | - | chr8_3:46859070-46859089 | None:intergenic | 60.0% |
| ! | GACCGGGTGGTTTAAGACGC+AGG | - | chr8_3:46859074-46859093 | None:intergenic | 60.0% |
| TTTACTGGTGGAGGGGGGAG+TGG | - | chr8_3:46859600-46859619 | None:intergenic | 60.0% | |
| GGCTACTTGCGGCCACAAAC+TGG | + | chr8_3:46859761-46859780 | Msa1291480:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 46858823 | 46860025 | 46858823 | ID=Msa1291480;Name=Msa1291480 |
| chr8_3 | mRNA | 46858823 | 46860025 | 46858823 | ID=Msa1291480-mRNA-1;Parent=Msa1291480;Name=Msa1291480-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|400 |
| chr8_3 | exon | 46858823 | 46860025 | 46858823 | ID=Msa1291480-mRNA-1:exon:13012;Parent=Msa1291480-mRNA-1 |
| chr8_3 | CDS | 46858823 | 46860025 | 46858823 | ID=Msa1291480-mRNA-1:cds;Parent=Msa1291480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
