AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1291750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291750 MtrunA17_Chr8g0366301 99.635 274 1 0 1 274 1 274 0.0 555
Msa1291750 MtrunA17_Chr5g0410841 83.206 262 38 1 1 262 1 256 1.35e-146 411
Msa1291750 MtrunA17_Chr7g0252481 59.191 272 103 2 1 272 1 264 2.93e-106 309
Msa1291750 MtrunA17_Chr1g0192521 24.561 285 184 9 2 271 52 320 2.07e-14 72.0
Msa1291750 MtrunA17_Chr7g0269731 37.634 93 57 1 180 271 229 321 7.87e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291750 AT5G46860.1 77.099 262 54 2 1 262 1 256 4.33e-145 407
Msa1291750 AT4G17730.2 72.308 260 67 2 1 257 1 258 2.54e-119 342
Msa1291750 AT4G17730.1 75.510 245 57 1 1 242 1 245 7.48e-119 341
Msa1291750 AT5G16830.1 63.569 269 89 3 1 262 1 267 6.86e-116 334
Msa1291750 AT1G32270.2 54.772 241 88 5 33 258 107 341 6.48e-76 234
Msa1291750 AT1G32270.1 54.348 230 84 5 33 247 107 330 2.34e-69 220
Msa1291750 AT5G26980.2 27.928 222 136 6 56 271 114 317 1.39e-13 70.1
Msa1291750 AT5G26980.3 27.928 222 136 6 56 271 114 317 1.39e-13 70.1
Msa1291750 AT5G26980.1 27.928 222 136 6 56 271 114 317 1.39e-13 70.1
Msa1291750 AT3G05710.2 28.378 222 136 6 56 271 122 326 3.71e-13 68.9
Msa1291750 AT3G05710.1 28.378 222 136 6 56 271 121 325 4.30e-13 68.6
Msa1291750 AT4G02195.1 33.333 87 58 0 186 272 232 318 5.60e-12 65.5

Find 96 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAAGAATTGGTAATTAT+TGG 0.174864 8_3:-47228496 None:intergenic
TTCTCTCTTATGTTGGTGTT+TGG 0.231337 8_3:+47233642 Msa1291750:three_prime_UTR
CGAAGCTCAGGGGTATCTTT+GGG 0.233346 8_3:-47228990 None:intergenic
TCTCTCTTATGTTGGTGTTT+GGG 0.269260 8_3:+47233643 Msa1291750:three_prime_UTR
AAACCTGAAGCTTTCAGTTT+TGG 0.279648 8_3:-47233850 None:intergenic
ACGAAGCTCAGGGGTATCTT+TGG 0.288713 8_3:-47228991 None:intergenic
TTTCTTTCTGTTTCTTTCTC+AGG 0.296537 8_3:+47228737 Msa1291750:five_prime_UTR
CAATCATGGTTCCTTGTTCA+TGG 0.303623 8_3:-47232196 None:intergenic
TTTCCAAAACTGAAAGCTTC+AGG 0.304637 8_3:+47233847 Msa1291750:three_prime_UTR
ACAAAGATCAAATTCATCTT+TGG 0.317195 8_3:+47232400 Msa1291750:CDS
TCTTAAGGCATGCTTGCTTT+TGG 0.320741 8_3:+47233374 Msa1291750:intron
CTACGTTGACGTGGATGTTT+TGG 0.340568 8_3:-47228598 None:intergenic
TGGATTAATTAATTAAGAAT+TGG 0.343639 8_3:-47228506 None:intergenic
CAAGAAATACAGCAGCAAAT+TGG 0.361872 8_3:+47232134 Msa1291750:CDS
CACAAGCAGTTCTTCCTTCG+AGG 0.364366 8_3:+47231120 Msa1291750:CDS
TTTACTGAGTCTCGGTTGAT+TGG 0.371529 8_3:+47233542 Msa1291750:three_prime_UTR
CTGAAAGCTTCAGGTTTGCT+TGG 0.372167 8_3:+47233856 Msa1291750:three_prime_UTR
TGCTTGTGCAGTTGCTGCAT+GGG 0.379673 8_3:-47232348 None:intergenic
ACAAGAAGGGCACGCTGTTC+TGG 0.388742 8_3:-47231445 None:intergenic
TCAGAGAATTATGAGCTTCC+AGG 0.393794 8_3:+47228821 Msa1291750:exon
AAATCAATGTCTTGCTGAAA+AGG 0.400320 8_3:-47233788 None:intergenic
ATTGAAGCTGGCCGGCCGTT+CGG 0.402656 8_3:+47228846 Msa1291750:CDS
GGTGTTACATTTACAAGTAA+AGG 0.406881 8_3:-47233746 None:intergenic
TGTTATGTTCTCTCTTATGT+TGG 0.413888 8_3:+47233635 Msa1291750:three_prime_UTR
ACAGCTAGTGAAATGGATAT+TGG 0.419510 8_3:+47231409 Msa1291750:CDS
AAGAAATAAGTTACCAATCA+TGG 0.419678 8_3:-47232210 None:intergenic
CCGGCAGCCACCGCTTGCGT+TGG 0.420644 8_3:-47228906 None:intergenic
CAGAGACTCGTTAATACCCT+TGG 0.421043 8_3:+47228963 Msa1291750:CDS
CACAAGACAAGACAACATAT+TGG 0.424638 8_3:+47230546 Msa1291750:CDS
GAAAGAAGAAAATGAAGATT+CGG 0.427038 8_3:-47228675 None:intergenic
CGGCAGCCACCGCTTGCGTT+GGG 0.428451 8_3:-47228905 None:intergenic
GGAGTCAGCACTGCGAATTT+CGG 0.433074 8_3:-47233767 None:intergenic
CAGCTACACAGCTAGTGAAA+TGG 0.437903 8_3:+47231402 Msa1291750:intron
CATGAACAAGGAACCATGAT+TGG 0.438688 8_3:+47232197 Msa1291750:CDS
CTCTCTTATGTTGGTGTTTG+GGG 0.441582 8_3:+47233644 Msa1291750:three_prime_UTR
GACGCGGCGGACCGATCAAC+GGG 0.441894 8_3:+47228874 Msa1291750:CDS
GTCACTAGCTTGTTTAAGCT+TGG 0.442963 8_3:-47230592 None:intergenic
GAAGCTCAGGGGTATCTTTG+GGG 0.447352 8_3:-47228989 None:intergenic
TAAGACTGAGTAAGTGTGTA+TGG 0.449123 8_3:+47233887 Msa1291750:three_prime_UTR
GCCGGCCAGCTTCAATATCC+TGG 0.456879 8_3:-47228839 None:intergenic
AGAAAATGAAGATTCGGATT+CGG 0.460739 8_3:-47228669 None:intergenic
TTGCTTGTGCAGTTGCTGCA+TGG 0.462390 8_3:-47232349 None:intergenic
ACAAGACAAGACAACATATT+GGG 0.464117 8_3:+47230547 Msa1291750:CDS
TTTGTGTGTGGCGTCATTAG+TGG 0.466914 8_3:-47228526 None:intergenic
GGGTCTTGCTTCCCGTTGAT+CGG 0.467196 8_3:-47228885 None:intergenic
TGAAAGCTTCAGGTTTGCTT+GGG 0.471110 8_3:+47233857 Msa1291750:three_prime_UTR
AGAACTGCTTGTGGAACAAA+AGG 0.482721 8_3:-47231110 None:intergenic
TGAGGCAATCATTGAGGAAA+GGG 0.485569 8_3:+47232100 Msa1291750:CDS
CTTAAGTGACATCATCAACT+AGG 0.494421 8_3:-47233513 None:intergenic
AATTGTGGTGGGAGGGAGCA+TGG 0.504741 8_3:-47228440 None:intergenic
CCAACGCAAGCGGTGGCTGC+CGG 0.505864 8_3:+47228906 Msa1291750:CDS
GAGTCTCTGAAACGTCGAAA+CGG 0.519182 8_3:-47228949 None:intergenic
AGTGTAAGCTGTTTCCCTCT+CGG 0.528417 8_3:-47231087 None:intergenic
CTGTTTCCCTCTCGGCTGAA+AGG 0.528840 8_3:-47231079 None:intergenic
AGCTTCCAGGATATTGAAGC+TGG 0.537286 8_3:+47228834 Msa1291750:CDS
TTCGGATTCGGTGATGTGGT+TGG 0.544162 8_3:-47228657 None:intergenic
TCCAGGATATTGAAGCTGGC+CGG 0.545584 8_3:+47228838 Msa1291750:CDS
AGAACAGCGTGCCCTTCTTG+TGG 0.549690 8_3:+47231447 Msa1291750:CDS
AAGACAACATATTGGGCAGT+TGG 0.551926 8_3:+47230554 Msa1291750:CDS
AGCTTCAGGTTTGCTTGGGT+AGG 0.552580 8_3:+47233861 Msa1291750:three_prime_UTR
ATCATTGAGGAAAGGGAGCA+AGG 0.557562 8_3:+47232107 Msa1291750:CDS
ACAAAATCACAATATACTGA+AGG 0.559521 8_3:-47233605 None:intergenic
ATTCAATGAGGCAATCATTG+AGG 0.560547 8_3:+47232094 Msa1291750:CDS
ACCTTCTGGATTCCACAAGA+AGG 0.564781 8_3:-47231459 None:intergenic
CGCAACGCCTTTCAGCCGAG+AGG 0.571050 8_3:+47231072 Msa1291750:CDS
AGTTGATGATGTCACTTAAG+TGG 0.576484 8_3:+47233516 Msa1291750:three_prime_UTR
TGCATGGGAGTTCTCAATGT+TGG 0.577781 8_3:-47232333 None:intergenic
GAAGCAAGACCCAACGCAAG+CGG 0.579735 8_3:+47228896 Msa1291750:CDS
ATGAGGCAATCATTGAGGAA+AGG 0.583047 8_3:+47232099 Msa1291750:CDS
ACATATTGGGCAGTTGGTGA+AGG 0.585467 8_3:+47230560 Msa1291750:CDS
CCCTTCTTGTGGAATCCAGA+AGG 0.586067 8_3:+47231458 Msa1291750:CDS
GCAACGCCTTTCAGCCGAGA+GGG 0.592602 8_3:+47231073 Msa1291750:CDS
TCAATTCTGCTACGTTGACG+TGG 0.598672 8_3:-47228607 None:intergenic
GCAGATTTCAGTGCATGATG+TGG 0.601693 8_3:+47233576 Msa1291750:three_prime_UTR
CAGATTTCAGTGCATGATGT+GGG 0.604262 8_3:+47233577 Msa1291750:three_prime_UTR
TTAAGTGACATCATCAACTA+GGG 0.605221 8_3:-47233512 None:intergenic
GCTGTGCTTGTCCATGAACA+AGG 0.607400 8_3:+47232185 Msa1291750:CDS
CCTTCTGGATTCCACAAGAA+GGG 0.608055 8_3:-47231458 None:intergenic
AGTGTTGAAAGAGTTTCAGA+AGG 0.608769 8_3:+47231049 Msa1291750:CDS
CAAAATCACAATATACTGAA+GGG 0.609099 8_3:-47233604 None:intergenic
GAATATATGCATTAGTACCA+TGG 0.613477 8_3:-47233468 None:intergenic
GTCTAAACTTACATTAACAT+CGG 0.614459 8_3:-47230628 None:intergenic
AAGCTCAGGGGTATCTTTGG+GGG 0.617180 8_3:-47228988 None:intergenic
GCAAGACCCAACGCAAGCGG+TGG 0.620082 8_3:+47228899 Msa1291750:CDS
CTCGAAGGAAGAACTGCTTG+TGG 0.627768 8_3:-47231119 None:intergenic
AACTTACATTAACATCGGCA+TGG 0.628855 8_3:-47230623 None:intergenic
AAGATTCGGATTCGGTGATG+TGG 0.630677 8_3:-47228661 None:intergenic
CCGCCGCGTCTCGAACCGAA+CGG 0.635407 8_3:-47228861 None:intergenic
TTATTCATGCTACAGGCAGG+AGG 0.657704 8_3:+47232046 Msa1291750:intron
TGATTGATAAATCACCTCGA+AGG 0.669232 8_3:-47231134 None:intergenic
TAATGAGATTGCATTCAATG+AGG 0.677503 8_3:+47232082 Msa1291750:CDS
GCAGTTGGTGAAGGATACAT+CGG 0.683175 8_3:+47230569 Msa1291750:CDS
CGATTCTATCAATTCCACCA+TGG 0.683706 8_3:+47233451 Msa1291750:three_prime_UTR
TCTCTGAAACGTCGAAACGG+CGG 0.685204 8_3:-47228946 None:intergenic
TATATGCATTAGTACCATGG+TGG 0.696255 8_3:-47233465 None:intergenic
CCGTTCGGTTCGAGACGCGG+CGG 0.734218 8_3:+47228861 Msa1291750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCTTAATTGAAATTTAT+CGG + chr8_3:47229977-47229996 Msa1291750:intron 10.0%
!!! ATTAAAATTTTAAAATGAGA+GGG - chr8_3:47230433-47230452 None:intergenic 10.0%
!!! AATTAAAATTTTAAAATGAG+AGG - chr8_3:47230434-47230453 None:intergenic 10.0%
!!! CTCATTTTAAAATTTTAATT+TGG + chr8_3:47230434-47230453 Msa1291750:intron 10.0%
!!! AATTAAGAATTGGTAATTAT+TGG - chr8_3:47228499-47228518 None:intergenic 15.0%
!! TGGATTAATTAATTAAGAAT+TGG - chr8_3:47228509-47228528 None:intergenic 15.0%
!!! TTTTTATTTTGATTTTGTTG+TGG + chr8_3:47229042-47229061 Msa1291750:intron 15.0%
!!! TGTTTTATGTATTTGAAATT+TGG + chr8_3:47229155-47229174 Msa1291750:intron 15.0%
!!! TCATTTTTTCAAATTATTAC+TGG + chr8_3:47229657-47229676 Msa1291750:intron 15.0%
!! TCAATTAAGATATAACAAAA+GGG - chr8_3:47229970-47229989 None:intergenic 15.0%
!! TTCAATTAAGATATAACAAA+AGG - chr8_3:47229971-47229990 None:intergenic 15.0%
!! TATCTTAATTGAAATTTATC+GGG + chr8_3:47229978-47229997 Msa1291750:intron 15.0%
!! TATTTGTGAATTTAAGTAAA+GGG - chr8_3:47230298-47230317 None:intergenic 15.0%
!!! TTAAAATTTTAAAATGAGAG+GGG - chr8_3:47230432-47230451 None:intergenic 15.0%
!!! TATTGTATATTTTGTATCTT+CGG + chr8_3:47230934-47230953 Msa1291750:intron 15.0%
!!! ATCCAACTTAAATTTTTTTA+GGG - chr8_3:47231596-47231615 None:intergenic 15.0%
!!! TATCCAACTTAAATTTTTTT+AGG - chr8_3:47231597-47231616 None:intergenic 15.0%
!! AAATAATAGTATTACTTATC+TGG + chr8_3:47231685-47231704 Msa1291750:intron 15.0%
!!! CAAATTTTAAAAAAATCGAT+AGG - chr8_3:47231804-47231823 None:intergenic 15.0%
!!! ATATATTTTGTAGATGATAT+TGG + chr8_3:47232308-47232327 Msa1291750:intron 15.0%
!! AAATATAAAAATTCATGTCA+TGG - chr8_3:47232481-47232500 None:intergenic 15.0%
!!! ATGACATGAATTTTTATATT+TGG + chr8_3:47232480-47232499 Msa1291750:intron 15.0%
!!! TGACATGAATTTTTATATTT+GGG + chr8_3:47232481-47232500 Msa1291750:intron 15.0%
!! AGAAAGAAAAAACGATTATT+GGG - chr8_3:47228726-47228745 None:intergenic 20.0%
!! TAATTATTGTGGAATTGTAA+AGG + chr8_3:47229184-47229203 Msa1291750:intron 20.0%
!!! TGTAAACTTTTTAATCTGTA+AGG + chr8_3:47229490-47229509 Msa1291750:intron 20.0%
!!! TTAAACAAGATTTTCAAAAC+AGG - chr8_3:47229795-47229814 None:intergenic 20.0%
!! ATTTGTGAATTTAAGTAAAG+GGG - chr8_3:47230297-47230316 None:intergenic 20.0%
!! GTATTTGTGAATTTAAGTAA+AGG - chr8_3:47230299-47230318 None:intergenic 20.0%
!!! TAAAATTTTAAAATGAGAGG+GGG - chr8_3:47230431-47230450 None:intergenic 20.0%
!! AAATAAGGTAAAAGACATTA+AGG - chr8_3:47230969-47230988 None:intergenic 20.0%
!!! AATTGGAAGAAAAACTTTTA+TGG - chr8_3:47231852-47231871 None:intergenic 20.0%
!!! AAATAATGCAATTTGTTGAA+TGG - chr8_3:47232008-47232027 None:intergenic 20.0%
!!! AAATCAATCGTCTTTTTATT+CGG - chr8_3:47232558-47232577 None:intergenic 20.0%
!! TCATAAAGTGATAAAACAAT+AGG - chr8_3:47232718-47232737 None:intergenic 20.0%
!! AATGAAAAATGTATTACAAG+AGG - chr8_3:47233190-47233209 None:intergenic 20.0%
!! TTTCTCTGTTCATATTTATT+CGG + chr8_3:47233230-47233249 Msa1291750:intron 20.0%
!!! TTTTTTTTTTCCTGTTCTTA+AGG + chr8_3:47233359-47233378 Msa1291750:intron 20.0%
!!! AGTATATTGTGATTTTGTTA+TGG + chr8_3:47233610-47233629 Msa1291750:three_prime_UTR 20.0%
!!! GTATATTGTGATTTTGTTAT+GGG + chr8_3:47233611-47233630 Msa1291750:three_prime_UTR 20.0%
!!! TATATTGTGATTTTGTTATG+GGG + chr8_3:47233612-47233631 Msa1291750:three_prime_UTR 20.0%
!!! GTACTATTTTTGATAATTTG+TGG + chr8_3:47233922-47233941 Msa1291750:three_prime_UTR 20.0%
!!! TATTTTTGATAATTTGTGGA+AGG + chr8_3:47233926-47233945 Msa1291750:three_prime_UTR 20.0%
!!! TGAATTTTTTCAATTGTGGT+GGG - chr8_3:47228454-47228473 None:intergenic 25.0%
!!! TTGAATTTTTTCAATTGTGG+TGG - chr8_3:47228455-47228474 None:intergenic 25.0%
!!! GTCTTGAATTTTTTCAATTG+TGG - chr8_3:47228458-47228477 None:intergenic 25.0%
!!! TTTTGTTTTGTTTTTGTGTG+TGG - chr8_3:47228541-47228560 None:intergenic 25.0%
! GAAAGAAGAAAATGAAGATT+CGG - chr8_3:47228678-47228697 None:intergenic 25.0%
! CAGAAAGAAAAAACGATTAT+TGG - chr8_3:47228727-47228746 None:intergenic 25.0%
!! TTTGGAACTGTTAATTATTG+TGG + chr8_3:47229173-47229192 Msa1291750:intron 25.0%
! GATTTAAATTGCAAGTTTGA+TGG + chr8_3:47229277-47229296 Msa1291750:intron 25.0%
! TTAGAGAATTATAGATGAGT+TGG + chr8_3:47229336-47229355 Msa1291750:intron 25.0%
! TAGAGAATTATAGATGAGTT+GGG + chr8_3:47229337-47229356 Msa1291750:intron 25.0%
!!! GATTTTTTGAATGTGGTTTT+AGG + chr8_3:47229385-47229404 Msa1291750:intron 25.0%
! TTAATGTAAATAGTCTGTGA+GGG + chr8_3:47229912-47229931 Msa1291750:intron 25.0%
! CACAAATAAAAAAACAACCT+TGG - chr8_3:47230019-47230038 None:intergenic 25.0%
! GACGAAAAAAATGTTAAATG+AGG - chr8_3:47230077-47230096 None:intergenic 25.0%
!!! AAAATTTTAAAATGAGAGGG+GGG - chr8_3:47230430-47230449 None:intergenic 25.0%
! GTCTAAACTTACATTAACAT+CGG - chr8_3:47230631-47230650 None:intergenic 25.0%
! TGATATATGGCACAAAATAA+AGG - chr8_3:47230653-47230672 None:intergenic 25.0%
! TAATATGAGAAATAACCTTC+TGG - chr8_3:47231476-47231495 None:intergenic 25.0%
!! TGTTTCTGATAAGAAAGTAA+AGG + chr8_3:47231545-47231564 Msa1291750:intron 25.0%
!!! CAACTTAAATTTTTTTAGGG+AGG - chr8_3:47231593-47231612 None:intergenic 25.0%
! CTCCCTAAAAAAATTTAAGT+TGG + chr8_3:47231591-47231610 Msa1291750:intron 25.0%
! TTATGGTAAATAACTGACAT+CGG - chr8_3:47231835-47231854 None:intergenic 25.0%
! ATTGTGAGGTAATGTTAAAT+TGG - chr8_3:47231869-47231888 None:intergenic 25.0%
!! CTCTGTTCATATATATTTTG+TGG + chr8_3:47231910-47231929 Msa1291750:intron 25.0%
! AAGAAATAAGTTACCAATCA+TGG - chr8_3:47232213-47232232 None:intergenic 25.0%
!! TTATTTTCTGTACTTGTTCA+TGG + chr8_3:47232269-47232288 Msa1291750:intron 25.0%
! ACAAAGATCAAATTCATCTT+TGG + chr8_3:47232400-47232419 Msa1291750:CDS 25.0%
!!! TTGATTTAACACAGTTTTGT+AGG + chr8_3:47232571-47232590 Msa1291750:intron 25.0%
!! TTCAACTTTTCATGTTAACA+AGG - chr8_3:47232613-47232632 None:intergenic 25.0%
! TTCTCTGTTCATATTTATTC+GGG + chr8_3:47233231-47233250 Msa1291750:intron 25.0%
! AGTGAAATCATTAATCAAGA+TGG - chr8_3:47233285-47233304 None:intergenic 25.0%
! CAAAATCACAATATACTGAA+GGG - chr8_3:47233607-47233626 None:intergenic 25.0%
! ACAAAATCACAATATACTGA+AGG - chr8_3:47233608-47233627 None:intergenic 25.0%
AGAAAATGAAGATTCGGATT+CGG - chr8_3:47228672-47228691 None:intergenic 30.0%
! TATTGGGATCTGTGATTTTA+GGG - chr8_3:47228710-47228729 None:intergenic 30.0%
! TTATTGGGATCTGTGATTTT+AGG - chr8_3:47228711-47228730 None:intergenic 30.0%
! TTTCTTTCTGTTTCTTTCTC+AGG + chr8_3:47228737-47228756 Msa1291750:five_prime_UTR 30.0%
!! GGTATTGATCTGAAAAATTC+CGG - chr8_3:47228928-47228947 None:intergenic 30.0%
ATTGAGCTTAATTGGATTTG+AGG + chr8_3:47229065-47229084 Msa1291750:intron 30.0%
!! AAGTGGTGATTTTGATGATT+TGG + chr8_3:47229107-47229126 Msa1291750:intron 30.0%
AATTGGAAGGAATTGAATGT+TGG + chr8_3:47229255-47229274 Msa1291750:intron 30.0%
AAATTGCAAGTTTGATGGAA+TGG + chr8_3:47229282-47229301 Msa1291750:intron 30.0%
! GGATTTAAGGTTAATGTTAG+AGG + chr8_3:47229312-47229331 Msa1291750:intron 30.0%
AGAGAATTATAGATGAGTTG+GGG + chr8_3:47229338-47229357 Msa1291750:intron 30.0%
!!! GAGTTGAGATTTTTTGAATG+TGG + chr8_3:47229378-47229397 Msa1291750:intron 30.0%
! TCTTGTTTAAGTTACTGAAC+TGG + chr8_3:47229805-47229824 Msa1291750:intron 30.0%
!!! TGGGTTAGTTATTTTGAGTT+TGG + chr8_3:47229833-47229852 Msa1291750:intron 30.0%
!!! TAGTTATTTTGAGTTTGGTG+TGG + chr8_3:47229838-47229857 Msa1291750:intron 30.0%
GTTAATGTAAATAGTCTGTG+AGG + chr8_3:47229911-47229930 Msa1291750:intron 30.0%
!! GAAGTTTTCAAATCTGAAAC+AGG + chr8_3:47230241-47230260 Msa1291750:intron 30.0%
ATAAAATGTCAACTGCTGAT+TGG + chr8_3:47230365-47230384 Msa1291750:intron 30.0%
! TAAAATGTCAACTGCTGATT+GGG + chr8_3:47230366-47230385 Msa1291750:intron 30.0%
!! GGAAACTGATAACTTTTTCT+TGG + chr8_3:47230387-47230406 Msa1291750:intron 30.0%
ACAAGACAAGACAACATATT+GGG + chr8_3:47230547-47230566 Msa1291750:CDS 30.0%
GTAAAAGACATTAAGGTCAT+AGG - chr8_3:47230962-47230981 None:intergenic 30.0%
ATTAGAGTTCCTAAAAGAGA+AGG + chr8_3:47231159-47231178 Msa1291750:intron 30.0%
TTAGAGTTCCTAAAAGAGAA+GGG + chr8_3:47231160-47231179 Msa1291750:intron 30.0%
!!! TAAATTTTTTTAGGGAGGCA+GGG - chr8_3:47231588-47231607 None:intergenic 30.0%
!!! TTAAATTTTTTTAGGGAGGC+AGG - chr8_3:47231589-47231608 None:intergenic 30.0%
! AACAGAGAAATAACAGCTTT+TGG - chr8_3:47231897-47231916 None:intergenic 30.0%
TCTTTGATTATTCATGCTAC+AGG + chr8_3:47232039-47232058 Msa1291750:intron 30.0%
TAATGAGATTGCATTCAATG+AGG + chr8_3:47232082-47232101 Msa1291750:CDS 30.0%
!! TTTTTATATTTGGGACCATG+AGG + chr8_3:47232490-47232509 Msa1291750:intron 30.0%
ATAGTTGTAGGTAATTGGAA+TGG + chr8_3:47232661-47232680 Msa1291750:intron 30.0%
!! ACTATTTTACCTTTTGAGAG+AGG + chr8_3:47232766-47232785 Msa1291750:intron 30.0%
!! CTATTTTACCTTTTGAGAGA+GGG + chr8_3:47232767-47232786 Msa1291750:intron 30.0%
TAAATAATCCCTCTCTCAAA+AGG - chr8_3:47232778-47232797 None:intergenic 30.0%
GAGAGGGATTATTTATTTGT+TGG + chr8_3:47232783-47232802 Msa1291750:intron 30.0%
! TAGATTTTCTACCATCTTCT+AGG + chr8_3:47232876-47232895 Msa1291750:intron 30.0%
! GTTGATCTGTTTGTTAGTTT+CGG + chr8_3:47233097-47233116 Msa1291750:intron 30.0%
! TTGATCTGTTTGTTAGTTTC+GGG + chr8_3:47233098-47233117 Msa1291750:intron 30.0%
ACAAGAACAATCAAAGTGAT+AGG - chr8_3:47233259-47233278 None:intergenic 30.0%
GAATATATGCATTAGTACCA+TGG - chr8_3:47233471-47233490 None:intergenic 30.0%
TTAAGTGACATCATCAACTA+GGG - chr8_3:47233515-47233534 None:intergenic 30.0%
TGTTATGTTCTCTCTTATGT+TGG + chr8_3:47233635-47233654 Msa1291750:three_prime_UTR 30.0%
! GGTGTTACATTTACAAGTAA+AGG - chr8_3:47233749-47233768 None:intergenic 30.0%
AAATCAATGTCTTGCTGAAA+AGG - chr8_3:47233791-47233810 None:intergenic 30.0%
!!! TTTTTTCAATTGTGGTGGGA+GGG - chr8_3:47228450-47228469 None:intergenic 35.0%
!!! ATTTTTTCAATTGTGGTGGG+AGG - chr8_3:47228451-47228470 None:intergenic 35.0%
! TTTTCTCGAGAGAGAAAGTT+TGG + chr8_3:47228777-47228796 Msa1291750:five_prime_UTR 35.0%
! TGTTGTGGATTGAGCTTAAT+TGG + chr8_3:47229057-47229076 Msa1291750:intron 35.0%
! GCTTAATTGGATTTGAGGTT+AGG + chr8_3:47229070-47229089 Msa1291750:intron 35.0%
! AGGTAGATGATGATGAAAAG+TGG + chr8_3:47229090-47229109 Msa1291750:intron 35.0%
TTGTAAAGGAGAGAGAGAAT+TGG + chr8_3:47229198-47229217 Msa1291750:intron 35.0%
TGTAAAGGAGAGAGAGAATT+GGG + chr8_3:47229199-47229218 Msa1291750:intron 35.0%
!! TGATTGATGATGACGAAAGA+GGG + chr8_3:47229222-47229241 Msa1291750:intron 35.0%
AGTTTGATGGAATGGTGATT+TGG + chr8_3:47229290-47229309 Msa1291750:intron 35.0%
GTTTGATGGAATGGTGATTT+GGG + chr8_3:47229291-47229310 Msa1291750:intron 35.0%
! GAATGGTGATTTGGGATTTA+AGG + chr8_3:47229299-47229318 Msa1291750:intron 35.0%
AGTTGGGGTTTAGAGAATTA+TGG + chr8_3:47229353-47229372 Msa1291750:intron 35.0%
GATATCTAGCCTAACAATGT+CGG - chr8_3:47229535-47229554 None:intergenic 35.0%
ACACAAAAAGTGGAAGATCT+CGG - chr8_3:47229594-47229613 None:intergenic 35.0%
CTATAAGCTCACACAAAAAG+TGG - chr8_3:47229604-47229623 None:intergenic 35.0%
! CTTTTTGTGTGAGCTTATAG+TGG + chr8_3:47229604-47229623 Msa1291750:intron 35.0%
!!! TCTTTGTTTTGTAGACGAAG+TGG - chr8_3:47229636-47229655 None:intergenic 35.0%
!! TATTACTGGTGTTGATGTGT+CGG + chr8_3:47229671-47229690 Msa1291750:intron 35.0%
! ATAGGTCCTAAGGAACTTTT+TGG + chr8_3:47229719-47229738 Msa1291750:intron 35.0%
! TAGGTCCTAAGGAACTTTTT+GGG + chr8_3:47229720-47229739 Msa1291750:intron 35.0%
!!! AACTTTTTGGGTTTGGATGT+AGG + chr8_3:47229732-47229751 Msa1291750:intron 35.0%
AAGTTACTGAACTGGTGAAA+TGG + chr8_3:47229813-47229832 Msa1291750:intron 35.0%
AGTTACTGAACTGGTGAAAT+GGG + chr8_3:47229814-47229833 Msa1291750:intron 35.0%
!!! ATTTTGAGTTTGGTGTGGTT+CGG + chr8_3:47229843-47229862 Msa1291750:intron 35.0%
TATTGCTTATGCAATGACCA+AGG + chr8_3:47230156-47230175 Msa1291750:intron 35.0%
TGGTTTCATCAAATGGAACT+TGG + chr8_3:47230194-47230213 Msa1291750:intron 35.0%
GGTTTCATCAAATGGAACTT+GGG + chr8_3:47230195-47230214 Msa1291750:intron 35.0%
TACTGTAAAATGAAACTCGC+TGG + chr8_3:47230316-47230335 Msa1291750:intron 35.0%
TATGCGTAAAACTTACATGG+CGG - chr8_3:47230491-47230510 None:intergenic 35.0%
CACAAGACAAGACAACATAT+TGG + chr8_3:47230546-47230565 Msa1291750:CDS 35.0%
AACTTACATTAACATCGGCA+TGG - chr8_3:47230626-47230645 None:intergenic 35.0%
ATATATCATCTGCATGTGCA+GGG + chr8_3:47230665-47230684 Msa1291750:intron 35.0%
CATGTGCAGGGTAATTTATA+TGG + chr8_3:47230677-47230696 Msa1291750:intron 35.0%
ACGATTATCTGTTTGACAGA+GGG - chr8_3:47230861-47230880 None:intergenic 35.0%
! ACCTTATTTCTTGTGTTTCC+AGG + chr8_3:47230980-47230999 Msa1291750:intron 35.0%
! AGTGTTGAAAGAGTTTCAGA+AGG + chr8_3:47231049-47231068 Msa1291750:CDS 35.0%
TGATTGATAAATCACCTCGA+AGG - chr8_3:47231137-47231156 None:intergenic 35.0%
TAGAGTTCCTAAAAGAGAAG+GGG + chr8_3:47231161-47231180 Msa1291750:intron 35.0%
! CACGCAATGGTTTTTAACAT+GGG + chr8_3:47231362-47231381 Msa1291750:intron 35.0%
! TTAACATGGGCTTTTCTTTC+TGG + chr8_3:47231375-47231394 Msa1291750:intron 35.0%
ACAGCTAGTGAAATGGATAT+TGG + chr8_3:47231409-47231428 Msa1291750:CDS 35.0%
!!! AAATTTTTTTAGGGAGGCAG+GGG - chr8_3:47231587-47231606 None:intergenic 35.0%
! GCACACTGATGTGTAATTTT+AGG + chr8_3:47231660-47231679 Msa1291750:intron 35.0%
! AGAACAACAGAATGTGGTTT+TGG - chr8_3:47231745-47231764 None:intergenic 35.0%
CCAAAAAGAACAACAGAATG+TGG - chr8_3:47231751-47231770 None:intergenic 35.0%
! CCACATTCTGTTGTTCTTTT+TGG + chr8_3:47231748-47231767 Msa1291750:intron 35.0%
!! TGTTCTTTTTGGCAGTTCAA+AGG + chr8_3:47231759-47231778 Msa1291750:intron 35.0%
GCATGAATAATCAAAGAGTC+AGG - chr8_3:47232036-47232055 None:intergenic 35.0%
ATTCAATGAGGCAATCATTG+AGG + chr8_3:47232094-47232113 Msa1291750:CDS 35.0%
CAAGAAATACAGCAGCAAAT+TGG + chr8_3:47232134-47232153 Msa1291750:CDS 35.0%
AAAATTCATGTCATGGAAGC+AGG - chr8_3:47232474-47232493 None:intergenic 35.0%
ATCTTAGAATAGACCTACTC+AGG - chr8_3:47232521-47232540 None:intergenic 35.0%
TGTTCTATAATCTGTGTCCA+TGG + chr8_3:47232635-47232654 Msa1291750:intron 35.0%
TTACCTACAACTATGAACCA+TGG - chr8_3:47232655-47232674 None:intergenic 35.0%
GGTTCATAGTTGTAGGTAAT+TGG + chr8_3:47232656-47232675 Msa1291750:intron 35.0%
CGTGCTTAGATAAATATAGC+TGG + chr8_3:47232692-47232711 Msa1291750:intron 35.0%
!! TTCTACCATCTTCTAGGATA+CGG + chr8_3:47232882-47232901 Msa1291750:intron 35.0%
TAGGATACGGTAACATCATT+TGG + chr8_3:47232895-47232914 Msa1291750:intron 35.0%
!! TGCTTGCTTTTGGTCATATT+TGG + chr8_3:47233384-47233403 Msa1291750:CDS 35.0%
!! GCTTGCTTTTGGTCATATTT+GGG + chr8_3:47233385-47233404 Msa1291750:CDS 35.0%
TATATGCATTAGTACCATGG+TGG - chr8_3:47233468-47233487 None:intergenic 35.0%
CTTAAGTGACATCATCAACT+AGG - chr8_3:47233516-47233535 None:intergenic 35.0%
!! AGTTGATGATGTCACTTAAG+TGG + chr8_3:47233516-47233535 Msa1291750:three_prime_UTR 35.0%
! TTCTCTCTTATGTTGGTGTT+TGG + chr8_3:47233642-47233661 Msa1291750:three_prime_UTR 35.0%
! TCTCTCTTATGTTGGTGTTT+GGG + chr8_3:47233643-47233662 Msa1291750:three_prime_UTR 35.0%
TTTCCAAAACTGAAAGCTTC+AGG + chr8_3:47233847-47233866 Msa1291750:three_prime_UTR 35.0%
! AAACCTGAAGCTTTCAGTTT+TGG - chr8_3:47233853-47233872 None:intergenic 35.0%
TAAGACTGAGTAAGTGTGTA+TGG + chr8_3:47233887-47233906 Msa1291750:three_prime_UTR 35.0%
! GGTTTTTATTGGGTGGAGAT+TGG - chr8_3:47228567-47228586 None:intergenic 40.0%
! ACACGTGGAGGGTTTTTATT+GGG - chr8_3:47228577-47228596 None:intergenic 40.0%
! TACACGTGGAGGGTTTTTAT+TGG - chr8_3:47228578-47228597 None:intergenic 40.0%
! TTGGTTTCGCGTTTTTCTTG+TGG - chr8_3:47228641-47228660 None:intergenic 40.0%
TCAGAGAATTATGAGCTTCC+AGG + chr8_3:47228821-47228840 Msa1291750:exon 40.0%
!! GTGATTTTGATGATTTGGCG+TGG + chr8_3:47229112-47229131 Msa1291750:intron 40.0%
!! GTGATTGATGATGACGAAAG+AGG + chr8_3:47229221-47229240 Msa1291750:intron 40.0%
!! GATTGATGATGACGAAAGAG+GGG + chr8_3:47229223-47229242 Msa1291750:intron 40.0%
AAGAGGGGATTAGGTGTAAT+TGG + chr8_3:47229238-47229257 Msa1291750:intron 40.0%
AACAATGTCGGTATTACCGA+TGG - chr8_3:47229523-47229542 None:intergenic 40.0%
TCGGTAATACCGACATTGTT+AGG + chr8_3:47229523-47229542 Msa1291750:intron 40.0%
GTTAGGCTAGATATCTTCCT+TGG + chr8_3:47229540-47229559 Msa1291750:intron 40.0%
CACAAAAAGTGGAAGATCTC+GGG - chr8_3:47229593-47229612 None:intergenic 40.0%
CCAAACCCAAAAAGTTCCTT+AGG - chr8_3:47229728-47229747 None:intergenic 40.0%
!!! CCTAAGGAACTTTTTGGGTT+TGG + chr8_3:47229725-47229744 Msa1291750:intron 40.0%
AACTGCTCACCAATCCAATT+CGG - chr8_3:47229762-47229781 None:intergenic 40.0%
ATGTAAATAGTCTGTGAGGG+AGG + chr8_3:47229915-47229934 Msa1291750:intron 40.0%
TGTAAATAGTCTGTGAGGGA+GGG + chr8_3:47229916-47229935 Msa1291750:intron 40.0%
!! GGTTGTTGTTTAGTGAACCA+AGG + chr8_3:47229999-47230018 Msa1291750:intron 40.0%
!!! GTTTATTTTGCCTGTCCAGT+TGG - chr8_3:47230128-47230147 None:intergenic 40.0%
CATTTGATGAAACCACCAGA+GGG - chr8_3:47230189-47230208 None:intergenic 40.0%
GTAAAATGAAACTCGCTGGA+TGG + chr8_3:47230320-47230339 Msa1291750:intron 40.0%
!!! TTTTAAAATGAGAGGGGGGT+GGG - chr8_3:47230426-47230445 None:intergenic 40.0%
!!! ATTTTAAAATGAGAGGGGGG+TGG - chr8_3:47230427-47230446 None:intergenic 40.0%
! GCCATGTAAGTTTTACGCAT+AGG + chr8_3:47230490-47230509 Msa1291750:intron 40.0%
GCCTATGCGTAAAACTTACA+TGG - chr8_3:47230494-47230513 None:intergenic 40.0%
! GCATAGGCTCTAACAATGTT+AGG + chr8_3:47230506-47230525 Msa1291750:intron 40.0%
AAGACAACATATTGGGCAGT+TGG + chr8_3:47230554-47230573 Msa1291750:CDS 40.0%
!! GTCACTAGCTTGTTTAAGCT+TGG - chr8_3:47230595-47230614 None:intergenic 40.0%
CTGCACATGCAGATGATATA+TGG - chr8_3:47230666-47230685 None:intergenic 40.0%
CATATATCATCTGCATGTGC+AGG + chr8_3:47230664-47230683 Msa1291750:intron 40.0%
CGATTATCTGTTTGACAGAG+GGG - chr8_3:47230860-47230879 None:intergenic 40.0%
GACGATTATCTGTTTGACAG+AGG - chr8_3:47230862-47230881 None:intergenic 40.0%
GCCTGGAAACACAAGAAATA+AGG - chr8_3:47230984-47231003 None:intergenic 40.0%
AGAACTGCTTGTGGAACAAA+AGG - chr8_3:47231113-47231132 None:intergenic 40.0%
TGTGCTTCTTTAGTCGCAAT+TGG + chr8_3:47231307-47231326 Msa1291750:intron 40.0%
! GCACGCAATGGTTTTTAACA+TGG + chr8_3:47231361-47231380 Msa1291750:intron 40.0%
!!! AATTTTTTTAGGGAGGCAGG+GGG - chr8_3:47231586-47231605 None:intergenic 40.0%
!! TCTTTTTGGCAGTTCAAAGG+AGG + chr8_3:47231762-47231781 Msa1291750:intron 40.0%
! AGCTTTTGGCATCAATTGTG+AGG - chr8_3:47231883-47231902 None:intergenic 40.0%
TGAAAGCTCAGTTGCTACAT+AGG - chr8_3:47231959-47231978 None:intergenic 40.0%
TGATTATTCATGCTACAGGC+AGG + chr8_3:47232043-47232062 Msa1291750:intron 40.0%
ATGAGGCAATCATTGAGGAA+AGG + chr8_3:47232099-47232118 Msa1291750:CDS 40.0%
TGAGGCAATCATTGAGGAAA+GGG + chr8_3:47232100-47232119 Msa1291750:CDS 40.0%
CAATCATGGTTCCTTGTTCA+TGG - chr8_3:47232199-47232218 None:intergenic 40.0%
CATGAACAAGGAACCATGAT+TGG + chr8_3:47232197-47232216 Msa1291750:CDS 40.0%
TGTCCATGGTTCATAGTTGT+AGG + chr8_3:47232649-47232668 Msa1291750:intron 40.0%
AGCTGTAGTTTCCTACATAC+AGG + chr8_3:47232845-47232864 Msa1291750:intron 40.0%
CTACAACAACTCCTGTATGT+AGG - chr8_3:47232859-47232878 None:intergenic 40.0%
TGTTACCGTATCCTAGAAGA+TGG - chr8_3:47232890-47232909 None:intergenic 40.0%
GTGGAAAAAGGGTTTGTGAT+AGG + chr8_3:47232939-47232958 Msa1291750:intron 40.0%
AGGATTTATGAGGTGTGAGA+AGG + chr8_3:47233045-47233064 Msa1291750:intron 40.0%
GGATTTATGAGGTGTGAGAA+GGG + chr8_3:47233046-47233065 Msa1291750:intron 40.0%
! TCCTTTGAGCATTTTTGCTC+TGG + chr8_3:47233149-47233168 Msa1291750:intron 40.0%
! CCTTTGAGCATTTTTGCTCT+GGG + chr8_3:47233150-47233169 Msa1291750:intron 40.0%
! CTTTGAGCATTTTTGCTCTG+GGG + chr8_3:47233151-47233170 Msa1291750:intron 40.0%
! TCTTAAGGCATGCTTGCTTT+TGG + chr8_3:47233374-47233393 Msa1291750:intron 40.0%
CGATTCTATCAATTCCACCA+TGG + chr8_3:47233451-47233470 Msa1291750:three_prime_UTR 40.0%
! AGTGGTGTTTTACTGAGTCT+CGG + chr8_3:47233534-47233553 Msa1291750:three_prime_UTR 40.0%
TTTACTGAGTCTCGGTTGAT+TGG + chr8_3:47233542-47233561 Msa1291750:three_prime_UTR 40.0%
CAGATTTCAGTGCATGATGT+GGG + chr8_3:47233577-47233596 Msa1291750:three_prime_UTR 40.0%
! CTCTCTTATGTTGGTGTTTG+GGG + chr8_3:47233644-47233663 Msa1291750:three_prime_UTR 40.0%
!! TGTTGGTGTTTGGGGTTTTA+AGG + chr8_3:47233652-47233671 Msa1291750:three_prime_UTR 40.0%
! TGAAAGCTTCAGGTTTGCTT+GGG + chr8_3:47233857-47233876 Msa1291750:three_prime_UTR 40.0%
TTTGTGTGTGGCGTCATTAG+TGG - chr8_3:47228529-47228548 None:intergenic 45.0%
!!! GATGTTTTGGTACACGTGGA+GGG - chr8_3:47228588-47228607 None:intergenic 45.0%
! CTACGTTGACGTGGATGTTT+TGG - chr8_3:47228601-47228620 None:intergenic 45.0%
TCAATTCTGCTACGTTGACG+TGG - chr8_3:47228610-47228629 None:intergenic 45.0%
! GTTTCGCGTTTTTCTTGTGG+TGG - chr8_3:47228638-47228657 None:intergenic 45.0%
!! AAGATTCGGATTCGGTGATG+TGG - chr8_3:47228664-47228683 None:intergenic 45.0%
AGCTTCCAGGATATTGAAGC+TGG + chr8_3:47228834-47228853 Msa1291750:CDS 45.0%
!! GAGTCTCTGAAACGTCGAAA+CGG - chr8_3:47228952-47228971 None:intergenic 45.0%
CAGAGACTCGTTAATACCCT+TGG + chr8_3:47228963-47228982 Msa1291750:CDS 45.0%
! ACAGCTTTTCACGAAGCTCA+GGG - chr8_3:47229004-47229023 None:intergenic 45.0%
! AACAGCTTTTCACGAAGCTC+AGG - chr8_3:47229005-47229024 None:intergenic 45.0%
GATTTGGCGTGGTTTATAGC+TGG + chr8_3:47229123-47229142 Msa1291750:intron 45.0%
! TGATGACGAAAGAGGGGATT+AGG + chr8_3:47229229-47229248 Msa1291750:intron 45.0%
GGGGATTAGGTGTAATTGGA+AGG + chr8_3:47229242-47229261 Msa1291750:intron 45.0%
AGTCATAAGCTCTGTAGCAC+CGG + chr8_3:47229414-47229433 Msa1291750:intron 45.0%
!! AGATATCTTCCTTGGTGTCC+TGG + chr8_3:47229548-47229567 Msa1291750:intron 45.0%
!! GATATCTTCCTTGGTGTCCT+GGG + chr8_3:47229549-47229568 Msa1291750:intron 45.0%
! TCGGTGTCTATTCTGTGAGT+CGG + chr8_3:47229690-47229709 Msa1291750:intron 45.0%
! TGGATGTAGGTTAGCCGAAT+TGG + chr8_3:47229745-47229764 Msa1291750:intron 45.0%
! GTAGGTTAGCCGAATTGGAT+TGG + chr8_3:47229750-47229769 Msa1291750:intron 45.0%
TTGTGCAATGCATGAGTGCA+AGG + chr8_3:47230034-47230053 Msa1291750:intron 45.0%
TGCATGAGTGCAAGGATAGA+AGG + chr8_3:47230042-47230061 Msa1291750:intron 45.0%
CCATTTGATGAAACCACCAG+AGG - chr8_3:47230190-47230209 None:intergenic 45.0%
CCTCTGGTGGTTTCATCAAA+TGG + chr8_3:47230187-47230206 Msa1291750:intron 45.0%
!!! CTTACATGGCGGTTTTGTTG+TGG - chr8_3:47230480-47230499 None:intergenic 45.0%
!! ACATATTGGGCAGTTGGTGA+AGG + chr8_3:47230560-47230579 Msa1291750:CDS 45.0%
!! GCAGTTGGTGAAGGATACAT+CGG + chr8_3:47230569-47230588 Msa1291750:CDS 45.0%
! AGTGTAAGCTGTTTCCCTCT+CGG - chr8_3:47231090-47231109 None:intergenic 45.0%
! AAGCTTGCCCCTTCTCTTTT+AGG - chr8_3:47231171-47231190 None:intergenic 45.0%
! TTGATGACTTCTGCACGCAA+TGG + chr8_3:47231349-47231368 Msa1291750:intron 45.0%
CAGCTACACAGCTAGTGAAA+TGG + chr8_3:47231402-47231421 Msa1291750:intron 45.0%
CCTTCTGGATTCCACAAGAA+GGG - chr8_3:47231461-47231480 None:intergenic 45.0%
ACCTTCTGGATTCCACAAGA+AGG - chr8_3:47231462-47231481 None:intergenic 45.0%
TTATTCATGCTACAGGCAGG+AGG + chr8_3:47232046-47232065 Msa1291750:intron 45.0%
ATCATTGAGGAAAGGGAGCA+AGG + chr8_3:47232107-47232126 Msa1291750:CDS 45.0%
TGCATGGGAGTTCTCAATGT+TGG - chr8_3:47232336-47232355 None:intergenic 45.0%
GTCAATATAGCCACTCCACT+TGG + chr8_3:47232917-47232936 Msa1291750:intron 45.0%
AATATAGCCACTCCACTTGG+TGG + chr8_3:47232920-47232939 Msa1291750:intron 45.0%
! CACTCCACTTGGTGGAAAAA+GGG + chr8_3:47232928-47232947 Msa1291750:intron 45.0%
! CAAACCCTTTTTCCACCAAG+TGG - chr8_3:47232935-47232954 None:intergenic 45.0%
AGAGAAAAGCCCAAAGTGAG+AGG + chr8_3:47232970-47232989 Msa1291750:intron 45.0%
TGAGGTGTGAGAAGGGAATT+TGG + chr8_3:47233053-47233072 Msa1291750:intron 45.0%
GAGGTGTGAGAAGGGAATTT+GGG + chr8_3:47233054-47233073 Msa1291750:intron 45.0%
AGGTGTGAGAAGGGAATTTG+GGG + chr8_3:47233055-47233074 Msa1291750:intron 45.0%
CCCAGAGCAAAAATGCTCAA+AGG - chr8_3:47233153-47233172 None:intergenic 45.0%
!!! CATTTTTGCTCTGGGGTTAC+AGG + chr8_3:47233158-47233177 Msa1291750:intron 45.0%
AGCAAGCATGCCTTAAGAAC+AGG - chr8_3:47233372-47233391 None:intergenic 45.0%
GCAGATTTCAGTGCATGATG+TGG + chr8_3:47233576-47233595 Msa1291750:three_prime_UTR 45.0%
! CTGAAAGCTTCAGGTTTGCT+TGG + chr8_3:47233856-47233875 Msa1291750:three_prime_UTR 45.0%
! CGTGGAGGGTTTTTATTGGG+TGG - chr8_3:47228574-47228593 None:intergenic 50.0%
!!! GGATGTTTTGGTACACGTGG+AGG - chr8_3:47228589-47228608 None:intergenic 50.0%
!!! CGTGGATGTTTTGGTACACG+TGG - chr8_3:47228592-47228611 None:intergenic 50.0%
!! TTCGGATTCGGTGATGTGGT+TGG - chr8_3:47228660-47228679 None:intergenic 50.0%
TCCAGGATATTGAAGCTGGC+CGG + chr8_3:47228838-47228857 Msa1291750:CDS 50.0%
!! TCTCTGAAACGTCGAAACGG+CGG - chr8_3:47228949-47228968 None:intergenic 50.0%
! GGTATCTTTGGGGGTTCCAA+GGG - chr8_3:47228982-47229001 None:intergenic 50.0%
!! AAGCTCAGGGGTATCTTTGG+GGG - chr8_3:47228991-47229010 None:intergenic 50.0%
!! GAAGCTCAGGGGTATCTTTG+GGG - chr8_3:47228992-47229011 None:intergenic 50.0%
!! CGAAGCTCAGGGGTATCTTT+GGG - chr8_3:47228993-47229012 None:intergenic 50.0%
!! ACGAAGCTCAGGGGTATCTT+TGG - chr8_3:47228994-47229013 None:intergenic 50.0%
! CAGCTTTTCACGAAGCTCAG+GGG - chr8_3:47229003-47229022 None:intergenic 50.0%
CGCATGTGTCAGTGTGATGT+CGG - chr8_3:47229456-47229475 None:intergenic 50.0%
TCTGTAAGGCCTAGCACCAT+CGG + chr8_3:47229504-47229523 Msa1291750:intron 50.0%
TCGGTATTACCGATGGTGCT+AGG - chr8_3:47229516-47229535 None:intergenic 50.0%
TCAAACCCAAGCACAAACCC+AGG - chr8_3:47229569-47229588 None:intergenic 50.0%
! TCTGTGAGTCGGTGCTTCAT+AGG + chr8_3:47229701-47229720 Msa1291750:intron 50.0%
! TCGGTGCTTCATAGGTCCTA+AGG + chr8_3:47229709-47229728 Msa1291750:intron 50.0%
TGAAACCACCAGAGGGAAGA+AGG - chr8_3:47230182-47230201 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+TGG - chr8_3:47230759-47230778 None:intergenic 50.0%
CTGCTATCTTCTTGCTTGCC+TGG - chr8_3:47231001-47231020 None:intergenic 50.0%
CTCGAAGGAAGAACTGCTTG+TGG - chr8_3:47231122-47231141 None:intergenic 50.0%
CACAAGCAGTTCTTCCTTCG+AGG + chr8_3:47231120-47231139 Msa1291750:CDS 50.0%
AAAGAGAAGGGGCAAGCTTG+TGG + chr8_3:47231172-47231191 Msa1291750:intron 50.0%
TTGTGGTGTCCCTCTGTTTC+TGG + chr8_3:47231189-47231208 Msa1291750:intron 50.0%
!! TCCCTCTGTTTCTGGTCATG+TGG + chr8_3:47231197-47231216 Msa1291750:intron 50.0%
GCCACATGACCAGAAACAGA+GGG - chr8_3:47231201-47231220 None:intergenic 50.0%
AGCCACATGACCAGAAACAG+AGG - chr8_3:47231202-47231221 None:intergenic 50.0%
CCCTTCTTGTGGAATCCAGA+AGG + chr8_3:47231458-47231477 Msa1291750:CDS 50.0%
GCTGTGCTTGTCCATGAACA+AGG + chr8_3:47232185-47232204 Msa1291750:CDS 50.0%
TGCTTGTGCAGTTGCTGCAT+GGG - chr8_3:47232351-47232370 None:intergenic 50.0%
TTGCTTGTGCAGTTGCTGCA+TGG - chr8_3:47232352-47232371 None:intergenic 50.0%
! TATTTGTTGGCACCCCTTGC+AGG + chr8_3:47232796-47232815 Msa1291750:intron 50.0%
! ATTTGTTGGCACCCCTTGCA+GGG + chr8_3:47232797-47232816 Msa1291750:intron 50.0%
ATCAACCACTACCCCTGCAA+GGG - chr8_3:47232812-47232831 None:intergenic 50.0%
! CCTTTTTCCACCAAGTGGAG+TGG - chr8_3:47232930-47232949 None:intergenic 50.0%
! CCACTCCACTTGGTGGAAAA+AGG + chr8_3:47232927-47232946 Msa1291750:intron 50.0%
ACCAGCTCACCTCTCACTTT+GGG - chr8_3:47232982-47233001 None:intergenic 50.0%
TACCAGCTCACCTCTCACTT+TGG - chr8_3:47232983-47233002 None:intergenic 50.0%
TGAGAGGTGAGCTGGTAAGT+TGG + chr8_3:47232986-47233005 Msa1291750:intron 50.0%
!! AGGTGAGCTGGTAAGTTGGT+TGG + chr8_3:47232990-47233009 Msa1291750:intron 50.0%
!! TGAGCTGGTAAGTTGGTTGG+AGG + chr8_3:47232993-47233012 Msa1291750:intron 50.0%
!! GAGCTGGTAAGTTGGTTGGA+GGG + chr8_3:47232994-47233013 Msa1291750:intron 50.0%
GGTGTGAGAAGGGAATTTGG+GGG + chr8_3:47233056-47233075 Msa1291750:intron 50.0%
GTGTGAGAAGGGAATTTGGG+GGG + chr8_3:47233057-47233076 Msa1291750:intron 50.0%
! CTGTTTGTTAGTTTCGGGCC+AGG + chr8_3:47233103-47233122 Msa1291750:intron 50.0%
GGAGTCAGCACTGCGAATTT+CGG - chr8_3:47233770-47233789 None:intergenic 50.0%
! AGCTTCAGGTTTGCTTGGGT+AGG + chr8_3:47233861-47233880 Msa1291750:three_prime_UTR 50.0%
GGGTCTTGCTTCCCGTTGAT+CGG - chr8_3:47228888-47228907 None:intergenic 55.0%
GAAGCAAGACCCAACGCAAG+CGG + chr8_3:47228896-47228915 Msa1291750:CDS 55.0%
! GGGTATCTTTGGGGGTTCCA+AGG - chr8_3:47228983-47229002 None:intergenic 55.0%
GTCAGTGTGATGTCGGACAC+TGG - chr8_3:47229449-47229468 None:intergenic 55.0%
AGCACAAACCCAGGACACCA+AGG - chr8_3:47229560-47229579 None:intergenic 55.0%
TGGTGTCCTGGGTTTGTGCT+TGG + chr8_3:47229560-47229579 Msa1291750:intron 55.0%
GGTGTCCTGGGTTTGTGCTT+GGG + chr8_3:47229561-47229580 Msa1291750:intron 55.0%
! TCCAGTTGGCAATCGACTCC+TGG - chr8_3:47230114-47230133 None:intergenic 55.0%
GAGTCGATTGCCAACTGGAC+AGG + chr8_3:47230115-47230134 Msa1291750:intron 55.0%
GGGGACAGCAAGAAGTTCAG+TGG - chr8_3:47230841-47230860 None:intergenic 55.0%
CTGTTTCCCTCTCGGCTGAA+AGG - chr8_3:47231082-47231101 None:intergenic 55.0%
! ACAAGAAGGGCACGCTGTTC+TGG - chr8_3:47231448-47231467 None:intergenic 55.0%
AGAACAGCGTGCCCTTCTTG+TGG + chr8_3:47231447-47231466 Msa1291750:CDS 55.0%
!!! TTTTTTAGGGAGGCAGGGGG+TGG - chr8_3:47231583-47231602 None:intergenic 55.0%
TTTGTTGGCACCCCTTGCAG+GGG + chr8_3:47232798-47232817 Msa1291750:intron 55.0%
TCAACCACTACCCCTGCAAG+GGG - chr8_3:47232811-47232830 None:intergenic 55.0%
CATCAACCACTACCCCTGCA+AGG - chr8_3:47232813-47232832 None:intergenic 55.0%
! CTTGCAGGGGTAGTGGTTGA+TGG + chr8_3:47232811-47232830 Msa1291750:intron 55.0%
GGAGAGAGCAGAGACACACA+CGG + chr8_3:47233015-47233034 Msa1291750:intron 55.0%
AGCAGAGACACACACGGAGT+GGG + chr8_3:47233021-47233040 Msa1291750:intron 55.0%
CGGAGTGGGGAGGATTTATG+AGG + chr8_3:47233035-47233054 Msa1291750:intron 55.0%
TGAGAAGGGAATTTGGGGGG+TGG + chr8_3:47233060-47233079 Msa1291750:intron 55.0%
GAGAAGGGAATTTGGGGGGT+GGG + chr8_3:47233061-47233080 Msa1291750:intron 55.0%
! TGTTAGTTTCGGGCCAGGCT+TGG + chr8_3:47233108-47233127 Msa1291750:intron 55.0%
! GTTAGTTTCGGGCCAGGCTT+GGG + chr8_3:47233109-47233128 Msa1291750:intron 55.0%
CTATTCCATCTGCCCAAGCC+TGG - chr8_3:47233124-47233143 None:intergenic 55.0%
GCCGGCCAGCTTCAATATCC+TGG - chr8_3:47228842-47228861 None:intergenic 60.0%
ATTGAAGCTGGCCGGCCGTT+CGG + chr8_3:47228846-47228865 Msa1291750:CDS 60.0%
! GGCAATCGACTCCTGGCAGT+GGG - chr8_3:47230107-47230126 None:intergenic 60.0%
! TGGCAATCGACTCCTGGCAG+TGG - chr8_3:47230108-47230127 None:intergenic 60.0%
GCCAGGAGTCGATTGCCAAC+TGG + chr8_3:47230110-47230129 Msa1291750:intron 60.0%
GACCAAGGCCTTCTTCCCTC+TGG + chr8_3:47230171-47230190 Msa1291750:intron 60.0%
CACCAGAGGGAAGAAGGCCT+TGG - chr8_3:47230176-47230195 None:intergenic 60.0%
CAAGGCCTTCTTCCCTCTGG+TGG + chr8_3:47230174-47230193 Msa1291750:intron 60.0%
GCAACGCCTTTCAGCCGAGA+GGG + chr8_3:47231073-47231092 Msa1291750:CDS 60.0%
CCTACTCAGGAGCTGCCTCA+TGG - chr8_3:47232508-47232527 None:intergenic 60.0%
CCATGAGGCAGCTCCTGAGT+AGG + chr8_3:47232505-47232524 Msa1291750:intron 60.0%
GCCCAAAGTGAGAGGTGAGC+TGG + chr8_3:47232978-47232997 Msa1291750:intron 60.0%
GAGCAGAGACACACACGGAG+TGG + chr8_3:47233020-47233039 Msa1291750:intron 60.0%
GCAGAGACACACACGGAGTG+GGG + chr8_3:47233022-47233041 Msa1291750:intron 60.0%
AAGGGAATTTGGGGGGTGGG+CGG + chr8_3:47233064-47233083 Msa1291750:intron 60.0%
AGACGCGGCGGACCGATCAA+CGG + chr8_3:47228873-47228892 Msa1291750:CDS 65.0%
GCAAGACCCAACGCAAGCGG+TGG + chr8_3:47228899-47228918 Msa1291750:CDS 65.0%
CGGACACTGGCGTCTTCGAC+CGG - chr8_3:47229436-47229455 None:intergenic 65.0%
CGTCACTTGCTCCCACTGCC+AGG + chr8_3:47230093-47230112 Msa1291750:intron 65.0%
CGCAACGCCTTTCAGCCGAG+AGG + chr8_3:47231072-47231091 Msa1291750:CDS 65.0%
GAGACACACACGGAGTGGGG+AGG + chr8_3:47233025-47233044 Msa1291750:intron 65.0%
CGCGTCTCGAACCGAACGGC+CGG - chr8_3:47228860-47228879 None:intergenic 70.0%
! CGGCCGTTCGGTTCGAGACG+CGG + chr8_3:47228858-47228877 Msa1291750:CDS 70.0%
CCGCCGCGTCTCGAACCGAA+CGG - chr8_3:47228864-47228883 None:intergenic 70.0%
! CCGTTCGGTTCGAGACGCGG+CGG + chr8_3:47228861-47228880 Msa1291750:CDS 70.0%
GACGCGGCGGACCGATCAAC+GGG + chr8_3:47228874-47228893 Msa1291750:CDS 70.0%
CGGCAGCCACCGCTTGCGTT+GGG - chr8_3:47228908-47228927 None:intergenic 70.0%
CCAACGCAAGCGGTGGCTGC+CGG + chr8_3:47228906-47228925 Msa1291750:CDS 70.0%
AGGGAGGCAGGGGGTGGAGT+GGG - chr8_3:47231577-47231596 None:intergenic 70.0%
TAGGGAGGCAGGGGGTGGAG+TGG - chr8_3:47231578-47231597 None:intergenic 70.0%
GGCACCCCTTGCAGGGGTAG+TGG + chr8_3:47232804-47232823 Msa1291750:intron 70.0%
GGAATTTGGGGGGTGGGCGG+CGG + chr8_3:47233067-47233086 Msa1291750:intron 70.0%
TCGGGCCAGGCTTGGGCAGA+TGG + chr8_3:47233116-47233135 Msa1291750:intron 70.0%
CCGGCAGCCACCGCTTGCGT+TGG - chr8_3:47228909-47228928 None:intergenic 75.0%
GGGAGGCAGGGGGTGGAGTG+GGG - chr8_3:47231576-47231595 None:intergenic 75.0%
ATTTGGGGGGTGGGCGGCGG+CGG + chr8_3:47233070-47233089 Msa1291750:intron 75.0%
! TGGGGGGTGGGCGGCGGCGG+CGG + chr8_3:47233073-47233092 Msa1291750:intron 90.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 47228443 47233972 47228443 ID=Msa1291750;Name=Msa1291750
chr8_3 mRNA 47228443 47233972 47228443 ID=Msa1291750-mRNA-1;Parent=Msa1291750;Name=Msa1291750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=388|1|1|1|1|1|7|526|274
chr8_3 exon 47228443 47229021 47228443 ID=Msa1291750-mRNA-1:exon:13132;Parent=Msa1291750-mRNA-1
chr8_3 exon 47230545 47230638 47230545 ID=Msa1291750-mRNA-1:exon:13133;Parent=Msa1291750-mRNA-1
chr8_3 exon 47231002 47231141 47231002 ID=Msa1291750-mRNA-1:exon:13134;Parent=Msa1291750-mRNA-1
chr8_3 exon 47231405 47231479 47231405 ID=Msa1291750-mRNA-1:exon:13135;Parent=Msa1291750-mRNA-1
chr8_3 exon 47232061 47232218 47232061 ID=Msa1291750-mRNA-1:exon:13136;Parent=Msa1291750-mRNA-1
chr8_3 exon 47232321 47232421 47232321 ID=Msa1291750-mRNA-1:exon:13137;Parent=Msa1291750-mRNA-1
chr8_3 exon 47233381 47233972 47233381 ID=Msa1291750-mRNA-1:exon:13138;Parent=Msa1291750-mRNA-1
chr8_3 five_prime_UTR 47228443 47228830 47228443 ID=Msa1291750-mRNA-1:five_prime_utr;Parent=Msa1291750-mRNA-1
chr8_3 CDS 47228831 47229021 47228831 ID=Msa1291750-mRNA-1:cds;Parent=Msa1291750-mRNA-1
chr8_3 CDS 47230545 47230638 47230545 ID=Msa1291750-mRNA-1:cds;Parent=Msa1291750-mRNA-1
chr8_3 CDS 47231002 47231141 47231002 ID=Msa1291750-mRNA-1:cds;Parent=Msa1291750-mRNA-1
chr8_3 CDS 47231405 47231479 47231405 ID=Msa1291750-mRNA-1:cds;Parent=Msa1291750-mRNA-1
chr8_3 CDS 47232061 47232218 47232061 ID=Msa1291750-mRNA-1:cds;Parent=Msa1291750-mRNA-1
chr8_3 CDS 47232321 47232421 47232321 ID=Msa1291750-mRNA-1:cds;Parent=Msa1291750-mRNA-1
chr8_3 CDS 47233381 47233446 47233381 ID=Msa1291750-mRNA-1:cds;Parent=Msa1291750-mRNA-1
chr8_3 three_prime_UTR 47233447 47233972 47233447 ID=Msa1291750-mRNA-1:three_prime_utr;Parent=Msa1291750-mRNA-1
Gene Sequence

>Msa1291750

ATGAGCTTCCAGGATATTGAAGCTGGCCGGCCGTTCGGTTCGAGACGCGGCGGACCGATCAACGGGAAGCAAGACCCAACGCAAGCGGTGGCTGCCGGAATTTTTCAGATCAATACCGCCGTTTCGACGTTTCAGAGACTCGTTAATACCCTTGGAACCCCCAAAGATACCCCTGAGCTTCGTGAAAAGCTTCACAAGACAAGACAACATATTGGGCAGTTGGTGAAGGATACATCGGCCAAGCTTAAACAAGCTAGTGACATTGATCACCATGCCGATGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCGCAACGCCTTTCAGCCGAGAGGGAAACAGCTTACACTCCTTTTGTTCCACAAGCAGTTCTTCCTTCGAGCTACACAGCTAGTGAAATGGATATTGGTACTGATAAGACACCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTTTTATTCTTAGATAATGAGATTGCATTCAATGAGGCAATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAATGAAATTTTCAAAGATCTTGCTGTGCTTGTCCATGAACAAGGAACCATGATTGATGATATTGGTTCCAACATTGAGAACTCCCATGCAGCAACTGCACAAGCAAAGTCTCAACTTGCAAAAGCTTCAAAAACACAAAGATCAAATTCATCTTTGGCATGCTTGCTTTTGGTCATATTTGGGATTGTGCTTCTCATCGTGATCATAGTTCTTGCTGCTTAG
Protein sequence

>Msa1291750

MSFQDIEAGRPFGSRRGGPINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRQHIGQLVKDTSAKLKQASDIDHHADVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQAVLPSSYTASEMDIGTDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLAKASKTQRSNSSLACLLLVIFGIVLLIVIIVLAA*