Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293630 | sp|Q9SLK2|ALIS3_ARATH | 70.032 | 317 | 69 | 3 | 15 | 305 | 31 | 347 | 1.03e-158 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293630 | A0A396GKC1 | 90.506 | 316 | 5 | 2 | 15 | 305 | 24 | 339 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1242940 | Msa1293630 | 0.854594 | 1.109042e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293630 | MtrunA17_Chr8g0356981 | 90.506 | 316 | 5 | 2 | 15 | 305 | 24 | 339 | 0.0 | 580 |
| Msa1293630 | MtrunA17_Chr2g0310111 | 73.333 | 315 | 58 | 3 | 15 | 303 | 30 | 344 | 8.80e-165 | 462 |
| Msa1293630 | MtrunA17_Chr2g0331311 | 56.395 | 344 | 112 | 6 | 1 | 306 | 2 | 345 | 2.31e-130 | 374 |
| Msa1293630 | MtrunA17_Chr7g0253651 | 56.364 | 330 | 114 | 7 | 4 | 303 | 15 | 344 | 4.74e-126 | 363 |
| Msa1293630 | MtrunA17_Chr2g0304231 | 57.325 | 314 | 107 | 4 | 16 | 302 | 30 | 343 | 9.32e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293630 | AT1G54320.1 | 70.032 | 317 | 69 | 3 | 15 | 305 | 31 | 347 | 1.05e-159 | 449 |
| Msa1293630 | AT3G12740.1 | 68.454 | 317 | 74 | 3 | 15 | 305 | 32 | 348 | 6.78e-158 | 444 |
| Msa1293630 | AT1G79450.1 | 64.762 | 315 | 85 | 3 | 15 | 303 | 31 | 345 | 1.90e-147 | 418 |
| Msa1293630 | AT1G16360.1 | 62.975 | 316 | 91 | 3 | 14 | 303 | 16 | 331 | 3.44e-145 | 412 |
| Msa1293630 | AT1G16360.2 | 63.175 | 315 | 90 | 3 | 15 | 303 | 31 | 345 | 8.04e-145 | 411 |
| Msa1293630 | AT1G16360.4 | 61.716 | 303 | 90 | 3 | 14 | 290 | 16 | 318 | 1.97e-134 | 385 |
| Msa1293630 | AT1G79450.2 | 64.576 | 271 | 70 | 3 | 59 | 303 | 8 | 278 | 3.06e-124 | 357 |
| Msa1293630 | AT5G46150.1 | 54.140 | 314 | 114 | 5 | 16 | 302 | 28 | 338 | 5.14e-118 | 343 |
| Msa1293630 | AT5G46150.2 | 54.140 | 314 | 114 | 5 | 16 | 302 | 28 | 338 | 5.14e-118 | 343 |
| Msa1293630 | AT5G46150.3 | 54.636 | 302 | 110 | 4 | 16 | 290 | 28 | 329 | 4.61e-116 | 338 |
| Msa1293630 | AT1G16360.3 | 61.622 | 185 | 70 | 1 | 14 | 197 | 16 | 200 | 7.76e-82 | 247 |
| Msa1293630 | AT1G16360.5 | 61.622 | 185 | 70 | 1 | 14 | 197 | 16 | 200 | 7.76e-82 | 247 |
| Msa1293630 | AT5G46150.4 | 57.609 | 184 | 76 | 2 | 16 | 197 | 28 | 211 | 8.66e-79 | 240 |
Find 78 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTACCGTCGGTGATTC+TGG | 0.266413 | 8_3:+51076316 | None:intergenic |
| AAGGTTAATTCTTTCATTAT+TGG | 0.272200 | 8_3:-51077966 | Msa1293630:five_prime_UTR |
| AGTGATAGAGATCATAAATT+TGG | 0.272931 | 8_3:-51075317 | Msa1293630:CDS |
| CCCTCAATTGCTCATCATTT+CGG | 0.279039 | 8_3:+51075507 | None:intergenic |
| CTTTGAATAATGACAGGAAA+TGG | 0.307095 | 8_3:+51078161 | None:intergenic |
| CTTCATATTTGTCATGGAAT+AGG | 0.326806 | 8_3:-51073836 | Msa1293630:CDS |
| CAGCATGCGTACCGTCAAAT+TGG | 0.350399 | 8_3:-51076591 | Msa1293630:CDS |
| TCTATTTGTAGTAAGATCAT+TGG | 0.358198 | 8_3:+51077896 | None:intergenic |
| ACCATCGTATTCATTCCTAT+TGG | 0.381424 | 8_3:-51076769 | Msa1293630:CDS |
| GGATGAAGGTTTCGTGTGGC+GGG | 0.385011 | 8_3:+51078183 | None:intergenic |
| TTGAATTGGTGGTTCTGTTA+TGG | 0.390155 | 8_3:-51077937 | Msa1293630:five_prime_UTR |
| ATTATTGGATTGGATTGAAT+TGG | 0.392862 | 8_3:-51077951 | Msa1293630:five_prime_UTR |
| CTTTCATCAACCTGCTCAAC+CGG | 0.393863 | 8_3:-51078132 | Msa1293630:intron |
| CCATACAACTTCCTAAAAGT+TGG | 0.399756 | 8_3:+51074840 | None:intergenic |
| TAATTCTTTCATTATTGGAT+TGG | 0.408761 | 8_3:-51077961 | Msa1293630:five_prime_UTR |
| TGGAAAGATTGAGGTGGATC+TGG | 0.409137 | 8_3:-51074820 | Msa1293630:CDS |
| GGGATTGCTTATCTCTCTGT+TGG | 0.413229 | 8_3:-51074678 | Msa1293630:CDS |
| ACTTTATCTGTCCAATTTGA+CGG | 0.415199 | 8_3:+51076580 | None:intergenic |
| GTGGAAAGAATGACTTCCTT+GGG | 0.417288 | 8_3:-51074698 | Msa1293630:CDS |
| AGAAAGAGAGAGAAAGAGAA+AGG | 0.422948 | 8_3:+51078291 | None:intergenic |
| AGCAGGAGGATCTTATCGTT+TGG | 0.422953 | 8_3:-51074881 | Msa1293630:CDS |
| GACCCTGAACGTGATGTAAA+TGG | 0.428391 | 8_3:-51075452 | Msa1293630:CDS |
| ATGAAGGTTTCGTGTGGCGG+GGG | 0.429785 | 8_3:+51078185 | None:intergenic |
| TACCTTGTGGTCTTATAGCT+TGG | 0.435333 | 8_3:-51075418 | Msa1293630:CDS |
| AGGTTGTTGAAATTGTTGAT+AGG | 0.436935 | 8_3:-51076621 | Msa1293630:CDS |
| ATAAGTGAAGCAACTCCAAT+AGG | 0.440672 | 8_3:+51076754 | None:intergenic |
| GGTGGAAAGAATGACTTCCT+TGG | 0.448097 | 8_3:-51074699 | Msa1293630:CDS |
| ACCGCTTGTGGTGTAAGAAT+AGG | 0.455359 | 8_3:+51076911 | None:intergenic |
| ATTGCTTATCTCTCTGTTGG+AGG | 0.456603 | 8_3:-51074675 | Msa1293630:CDS |
| ACACCATTTACATCACGTTC+AGG | 0.458429 | 8_3:+51075449 | None:intergenic |
| TCTCTTTGTTATAGGCAACT+TGG | 0.460443 | 8_3:-51073864 | Msa1293630:intron |
| GCCGAAATGATGAGCAATTG+AGG | 0.464516 | 8_3:-51075508 | Msa1293630:CDS |
| GAGATCCTTCATATTTGTCA+TGG | 0.476748 | 8_3:-51073842 | Msa1293630:CDS |
| GAAAGAGAGAGAAAGAGAAA+GGG | 0.480863 | 8_3:+51078292 | None:intergenic |
| AGAAGGGTTACCGGTTGAGC+AGG | 0.485476 | 8_3:+51078122 | None:intergenic |
| GATGAAGGTTTCGTGTGGCG+GGG | 0.489462 | 8_3:+51078184 | None:intergenic |
| TTGTATTGTCAACTACTAGT+TGG | 0.492500 | 8_3:-51074725 | Msa1293630:CDS |
| ATTGAGGTGGATCTGGAGAA+AGG | 0.496339 | 8_3:-51074813 | Msa1293630:CDS |
| TCTTTCAAGCTCTTTGCAAA+AGG | 0.501248 | 8_3:-51077985 | Msa1293630:intron |
| ATTGGATTGGATTGAATTGG+TGG | 0.507211 | 8_3:-51077948 | Msa1293630:five_prime_UTR |
| GATGAGCAATTGAGGGATGC+TGG | 0.508544 | 8_3:-51075500 | Msa1293630:CDS |
| AGCTGATAGTAAACATAGAT+AGG | 0.508601 | 8_3:+51076351 | None:intergenic |
| TGAACAAGAAAGAAATCTCA+TGG | 0.508781 | 8_3:-51075343 | Msa1293630:CDS |
| TTTGAATAATGACAGGAAAT+GGG | 0.517106 | 8_3:+51078162 | None:intergenic |
| CCGAAATGATGAGCAATTGA+GGG | 0.522900 | 8_3:-51075507 | Msa1293630:CDS |
| ACAAACATATTTACCGCTTG+TGG | 0.523482 | 8_3:+51076899 | None:intergenic |
| TCAACTACTAGTTGGCTTGG+TGG | 0.523709 | 8_3:-51074717 | Msa1293630:CDS |
| TATGAAACAGTTGAGTGAGC+AGG | 0.525938 | 8_3:-51074898 | Msa1293630:intron |
| AGAGAGAAAGAAACGGTCAC+CGG | 0.527775 | 8_3:-51078211 | Msa1293630:five_prime_UTR |
| GGGATGAAGGTTTCGTGTGG+CGG | 0.528934 | 8_3:+51078182 | None:intergenic |
| CTATTCCATGACAAATATGA+AGG | 0.529494 | 8_3:+51073837 | None:intergenic |
| TGAAATTGTTGATAGGTATG+AGG | 0.531187 | 8_3:-51076614 | Msa1293630:CDS |
| GAAGTTGTATGGAAAGATTG+AGG | 0.531483 | 8_3:-51074829 | Msa1293630:CDS |
| AATGACAGGAAATGGGATGA+AGG | 0.536654 | 8_3:+51078169 | None:intergenic |
| TCATGGAATAGGAACCCATC+AGG | 0.540204 | 8_3:-51073825 | Msa1293630:intron |
| AATTGACTTTGAATAATGAC+AGG | 0.542372 | 8_3:+51078155 | None:intergenic |
| GTTATGGCAACAACCAGCGT+TGG | 0.544670 | 8_3:-51077921 | Msa1293630:five_prime_UTR |
| TCTCAGTTCAGTGACCTGAT+GGG | 0.549779 | 8_3:+51073811 | None:intergenic |
| TTGTCAACTACTAGTTGGCT+TGG | 0.552516 | 8_3:-51074720 | Msa1293630:CDS |
| GAGAAAGAGAGAGAAAGAAA+CGG | 0.556282 | 8_3:-51078218 | Msa1293630:five_prime_UTR |
| CACCATTTACATCACGTTCA+GGG | 0.557158 | 8_3:+51075450 | None:intergenic |
| GCCTATTCTTACACCACAAG+CGG | 0.573542 | 8_3:-51076912 | Msa1293630:intron |
| ATAAGACCACAAGGTACGAT+TGG | 0.580186 | 8_3:+51075425 | None:intergenic |
| AGGATCTTATCGTTTGGATG+CGG | 0.592427 | 8_3:-51074875 | Msa1293630:CDS |
| CTCCAAGCTATAAGACCACA+AGG | 0.620489 | 8_3:+51075416 | None:intergenic |
| GTTGTATGGAAAGATTGAGG+TGG | 0.624167 | 8_3:-51074826 | Msa1293630:CDS |
| CAGAGAGATAAGCAATCCCA+AGG | 0.625244 | 8_3:+51074682 | None:intergenic |
| ATATACAATAGTAAAAGCCA+TGG | 0.632004 | 8_3:+51074635 | None:intergenic |
| AAGATCATTGGATCCAACGC+TGG | 0.632825 | 8_3:+51077908 | None:intergenic |
| GAAACAGTTGAGTGAGCAGG+AGG | 0.635104 | 8_3:-51074895 | Msa1293630:intron |
| GGAAAAGCAAACTCAACAAG+TGG | 0.654434 | 8_3:-51075479 | Msa1293630:CDS |
| GTAAGAATAGGCTTGCATGC+TGG | 0.654457 | 8_3:+51076923 | None:intergenic |
| CTGCCGATAAAACTTGCACA+AGG | 0.669954 | 8_3:-51076540 | Msa1293630:CDS |
| AATGGGATGAAGGTTTCGTG+TGG | 0.687757 | 8_3:+51078179 | None:intergenic |
| TCCAATAGGAATGAATACGA+TGG | 0.696774 | 8_3:+51076768 | None:intergenic |
| GAAAGGTGATGAGATAAACG+TGG | 0.699022 | 8_3:-51074796 | Msa1293630:intron |
| ACTTCTACCAGAATCACCGA+CGG | 0.729577 | 8_3:-51076323 | Msa1293630:intron |
| GGTGTGCCAATCGTACCTTG+TGG | 0.829864 | 8_3:-51075431 | Msa1293630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAAAAAAAAA+AGG | - | chr8_3:51076489-51076508 | Msa1293630:intron | 0.0% |
| !!! | TTTTTTATGTTCATTTTTTA+AGG | - | chr8_3:51074295-51074314 | Msa1293630:intron | 10.0% |
| !!! | TTTTTATGTTCATTTTTTAA+GGG | - | chr8_3:51074296-51074315 | Msa1293630:intron | 10.0% |
| !!! | AAAGTTCAATTTTTTTTTTT+TGG | - | chr8_3:51074505-51074524 | Msa1293630:intron | 10.0% |
| !! | AAAGATAAAATAAAGTTAAA+TGG | - | chr8_3:51074658-51074677 | Msa1293630:CDS | 10.0% |
| !! | TATTTGTATTTATATTCAAA+AGG | + | chr8_3:51076328-51076347 | None:intergenic | 10.0% |
| !! | AAGTATATATTATAATTACA+GGG | + | chr8_3:51078030-51078049 | None:intergenic | 10.0% |
| !! | AAAGTATATATTATAATTAC+AGG | + | chr8_3:51078031-51078050 | None:intergenic | 10.0% |
| !!! | TTTTATGTTTTTTTGTGTTT+AGG | + | chr8_3:51073783-51073802 | None:intergenic | 15.0% |
| !!! | TTATGATTACTTCTTTTTTA+GGG | - | chr8_3:51074199-51074218 | Msa1293630:intron | 15.0% |
| !! | AATTAGAAAAAACAAAACAT+GGG | + | chr8_3:51074247-51074266 | None:intergenic | 15.0% |
| !! | AAATTAGAAAAAACAAAACA+TGG | + | chr8_3:51074248-51074267 | None:intergenic | 15.0% |
| !!! | ATGTTTTGTTTTTTCTAATT+TGG | - | chr8_3:51074247-51074266 | Msa1293630:intron | 15.0% |
| !!! | TTTTATGTTCATTTTTTAAG+GGG | - | chr8_3:51074297-51074316 | Msa1293630:intron | 15.0% |
| !!! | TTTATTGTTACTTGTTTTTT+AGG | - | chr8_3:51074379-51074398 | Msa1293630:intron | 15.0% |
| !!! | TTTTTTTGGTTATTTTTTGA+AGG | - | chr8_3:51074519-51074538 | Msa1293630:intron | 15.0% |
| !!! | TTTTTTGGTTATTTTTTGAA+GGG | - | chr8_3:51074520-51074539 | Msa1293630:intron | 15.0% |
| !! | GTAAACTTAAAAAAGTTAAA+TGG | - | chr8_3:51074680-51074699 | Msa1293630:CDS | 15.0% |
| !! | ATTTGAAAAAAAGGATTATT+TGG | - | chr8_3:51076008-51076027 | Msa1293630:intron | 15.0% |
| !!! | TTTATATTCAAATTGACTTA+AGG | + | chr8_3:51077630-51077649 | None:intergenic | 15.0% |
| !! | AAGAATAAGAATAAGAAGAA+GGG | + | chr8_3:51073927-51073946 | None:intergenic | 20.0% |
| !! | AAGGTTAATTCTTTCATTAT+TGG | - | chr8_3:51074064-51074083 | Msa1293630:intron | 20.0% |
| !! | TAATTCTTTCATTATTGGAT+TGG | - | chr8_3:51074069-51074088 | Msa1293630:intron | 20.0% |
| !!! | GTTATGATTACTTCTTTTTT+AGG | - | chr8_3:51074198-51074217 | Msa1293630:intron | 20.0% |
| !! | AAATTAAGTTTCAAAAACCA+TGG | + | chr8_3:51074883-51074902 | None:intergenic | 20.0% |
| !! | TGACAATAATTGTATGTATT+TGG | - | chr8_3:51074990-51075009 | Msa1293630:intron | 20.0% |
| !! | GACAATAATTGTATGTATTT+GGG | - | chr8_3:51074991-51075010 | Msa1293630:intron | 20.0% |
| !!! | TTTAGAATTCACTATTTACA+TGG | - | chr8_3:51075195-51075214 | Msa1293630:intron | 20.0% |
| !! | AACAAATGATCATCAAAATT+TGG | + | chr8_3:51075615-51075634 | None:intergenic | 20.0% |
| !! | TAAAAACTACTCTTATGAAT+AGG | - | chr8_3:51075636-51075655 | Msa1293630:intron | 20.0% |
| !! | AACAAACAACATTTATTCAT+AGG | + | chr8_3:51075940-51075959 | None:intergenic | 20.0% |
| !! | TCAAATTAGAAAACCATAAT+GGG | + | chr8_3:51075994-51076013 | None:intergenic | 20.0% |
| !! | TTCAAATTAGAAAACCATAA+TGG | + | chr8_3:51075995-51076014 | None:intergenic | 20.0% |
| !!! | GGTTTTCTAATTTGAAAAAA+AGG | - | chr8_3:51075999-51076018 | Msa1293630:intron | 20.0% |
| !!! | AACATTTCATGCATTTTAAA+TGG | + | chr8_3:51076135-51076154 | None:intergenic | 20.0% |
| !! | CTAAATTTCTTATAAGCTTA+TGG | - | chr8_3:51076828-51076847 | Msa1293630:intron | 20.0% |
| !! | TGATTGATCTATTTAAAGAT+TGG | + | chr8_3:51076972-51076991 | None:intergenic | 20.0% |
| !! | TGAGCTAATAAAAATTATGT+TGG | + | chr8_3:51077606-51077625 | None:intergenic | 20.0% |
| !!! | ATTTCAACTGATTCATATAA+GGG | + | chr8_3:51078059-51078078 | None:intergenic | 20.0% |
| !!! | AATTTCAACTGATTCATATA+AGG | + | chr8_3:51078060-51078079 | None:intergenic | 20.0% |
| !! | CTGAAAATTAATAATACACA+AGG | + | chr8_3:51078285-51078304 | None:intergenic | 20.0% |
| ! | CACAAAAAAACATAAAAGAG+AGG | - | chr8_3:51073786-51073805 | Msa1293630:intron | 25.0% |
| ! | TTTGAATAATGACAGGAAAT+GGG | + | chr8_3:51073871-51073890 | None:intergenic | 25.0% |
| !! | AATTGACTTTGAATAATGAC+AGG | + | chr8_3:51073878-51073897 | None:intergenic | 25.0% |
| ! | GAAGAATAAGAATAAGAAGA+AGG | + | chr8_3:51073928-51073947 | None:intergenic | 25.0% |
| !! | ATTATTGGATTGGATTGAAT+TGG | - | chr8_3:51074079-51074098 | Msa1293630:intron | 25.0% |
| ! | TCTATTTGTAGTAAGATCAT+TGG | + | chr8_3:51074137-51074156 | None:intergenic | 25.0% |
| ! | AAACAAAAAATCTCACACTT+GGG | + | chr8_3:51074175-51074194 | None:intergenic | 25.0% |
| ! | AAAACAAAAAATCTCACACT+TGG | + | chr8_3:51074176-51074195 | None:intergenic | 25.0% |
| ! | ATCAAGAAAATATTACCTCA+TGG | - | chr8_3:51074334-51074353 | Msa1293630:intron | 25.0% |
| !! | AAAATATTACCTCATGGTTT+TGG | - | chr8_3:51074340-51074359 | Msa1293630:intron | 25.0% |
| ! | ATAAGTTGTTTACCTAAACA+AGG | + | chr8_3:51074575-51074594 | None:intergenic | 25.0% |
| ! | ACTTTCTTCATAAGTTATCT+TGG | - | chr8_3:51074706-51074725 | Msa1293630:CDS | 25.0% |
| ! | TTTAAGCAAATATTACTCCA+TGG | - | chr8_3:51074863-51074882 | Msa1293630:CDS | 25.0% |
| ! | ATTTGACATGTTGAGTATTA+TGG | - | chr8_3:51074899-51074918 | Msa1293630:intron | 25.0% |
| ! | ATGAGGTTATGAATGATTTA+TGG | - | chr8_3:51074945-51074964 | Msa1293630:intron | 25.0% |
| ! | AGTGAATTCTAAATGCATAT+AGG | + | chr8_3:51075188-51075207 | None:intergenic | 25.0% |
| !! | TGGTATATTACTTTCTTTTC+AGG | - | chr8_3:51075215-51075234 | Msa1293630:intron | 25.0% |
| ! | TTATAACTGATCTTTGTATC+AGG | - | chr8_3:51075389-51075408 | Msa1293630:CDS | 25.0% |
| ! | AGTTAATGCAGAAATAACAT+AGG | + | chr8_3:51075563-51075582 | None:intergenic | 25.0% |
| !! | TTTGGTATCATTTAAGTTTG+AGG | - | chr8_3:51076026-51076045 | Msa1293630:intron | 25.0% |
| ! | AGTGATAGAGATCATAAATT+TGG | - | chr8_3:51076713-51076732 | Msa1293630:intron | 25.0% |
| !!! | TACCATTCTGGAAATTTTTA+GGG | + | chr8_3:51076751-51076770 | None:intergenic | 25.0% |
| !!! | TTACCATTCTGGAAATTTTT+AGG | + | chr8_3:51076752-51076771 | None:intergenic | 25.0% |
| ! | AAAAATGTGTATGTCACATT+TGG | + | chr8_3:51077004-51077023 | None:intergenic | 25.0% |
| !!! | TACAACACATATAGTTTTAG+TGG | - | chr8_3:51077271-51077290 | Msa1293630:intron | 25.0% |
| ! | ATATACAATAGTAAAAGCCA+TGG | + | chr8_3:51077398-51077417 | None:intergenic | 25.0% |
| !!! | TTTTGAATGATGATGTTCAT+TGG | - | chr8_3:51077471-51077490 | Msa1293630:intron | 25.0% |
| ! | AAGATGTAAGAAGCAAAAAA+AGG | - | chr8_3:51077752-51077771 | Msa1293630:intron | 25.0% |
| CTTTGAATAATGACAGGAAA+TGG | + | chr8_3:51073872-51073891 | None:intergenic | 30.0% | |
| AGATAGAAAGAGAAAAAGAG+AGG | + | chr8_3:51073972-51073991 | None:intergenic | 30.0% | |
| TTAGGCATTTCAGCTTAATT+TGG | - | chr8_3:51074397-51074416 | Msa1293630:intron | 30.0% | |
| !! | ATAAGACTTTAGCCTTGTTT+AGG | - | chr8_3:51074560-51074579 | Msa1293630:intron | 30.0% |
| TAGCTTACGAAAAATGTCAT+AGG | - | chr8_3:51074754-51074773 | Msa1293630:CDS | 30.0% | |
| AACAAAAGCCACAATTAGAT+TGG | + | chr8_3:51074845-51074864 | None:intergenic | 30.0% | |
| AGGTTGTTGAAATTGTTGAT+AGG | - | chr8_3:51075409-51075428 | Msa1293630:CDS | 30.0% | |
| ! | TGAAATTGTTGATAGGTATG+AGG | - | chr8_3:51075416-51075435 | Msa1293630:CDS | 30.0% |
| ACTTTATCTGTCCAATTTGA+CGG | + | chr8_3:51075453-51075472 | None:intergenic | 30.0% | |
| GAACAAGTACAAAGAGAAAA+TGG | + | chr8_3:51075541-51075560 | None:intergenic | 30.0% | |
| AAACTACTCTTATGAATAGG+TGG | - | chr8_3:51075639-51075658 | Msa1293630:intron | 30.0% | |
| AGCTGATAGTAAACATAGAT+AGG | + | chr8_3:51075682-51075701 | None:intergenic | 30.0% | |
| AATAAAAAGCAATGTACCGT+CGG | + | chr8_3:51075726-51075745 | None:intergenic | 30.0% | |
| ! | ATAATGGGAACACATGAAAA+CGG | + | chr8_3:51075979-51075998 | None:intergenic | 30.0% |
| TAATTTCCACTCTCATTGAT+TGG | - | chr8_3:51076397-51076416 | Msa1293630:intron | 30.0% | |
| AAAAAACCAATCAATGAGAG+TGG | + | chr8_3:51076406-51076425 | None:intergenic | 30.0% | |
| !!! | CTCATTGATTGGTTTTTTAG+TGG | - | chr8_3:51076408-51076427 | Msa1293630:intron | 30.0% |
| TGAACAAGAAAGAAATCTCA+TGG | - | chr8_3:51076687-51076706 | Msa1293630:intron | 30.0% | |
| TTCCCTAAAAATTTCCAGAA+TGG | - | chr8_3:51076746-51076765 | Msa1293630:CDS | 30.0% | |
| TTCCAGAATGGTAATATTAC+AGG | - | chr8_3:51076758-51076777 | Msa1293630:CDS | 30.0% | |
| GAGTAAGTGAAAAAACTTAC+CGG | + | chr8_3:51076809-51076828 | None:intergenic | 30.0% | |
| ACACTGGAAATCATAAAATC+AGG | + | chr8_3:51077030-51077049 | None:intergenic | 30.0% | |
| TTGTATTGTCAACTACTAGT+TGG | - | chr8_3:51077305-51077324 | Msa1293630:intron | 30.0% | |
| ! | TTGTATATTTTGTCAAGCCA+AGG | - | chr8_3:51077410-51077429 | Msa1293630:intron | 30.0% |
| TGAAGTAAGGAAAGTTATTG+AGG | + | chr8_3:51077513-51077532 | None:intergenic | 30.0% | |
| AACTTTCCTTACTTCATACA+TGG | - | chr8_3:51077517-51077536 | Msa1293630:intron | 30.0% | |
| ACTTTCCTTACTTCATACAT+GGG | - | chr8_3:51077518-51077537 | Msa1293630:intron | 30.0% | |
| AATTACACCGATGTAATACT+TGG | - | chr8_3:51077816-51077835 | Msa1293630:intron | 30.0% | |
| ATTACACCGATGTAATACTT+GGG | - | chr8_3:51077817-51077836 | Msa1293630:intron | 30.0% | |
| ATACTACCCAAGTATTACAT+CGG | + | chr8_3:51077826-51077845 | None:intergenic | 30.0% | |
| GTTGAAATTGTGAAGTTTAG+TGG | - | chr8_3:51078071-51078090 | Msa1293630:intron | 30.0% | |
| ! | TCTGTATGTCTCTTTGTTAT+AGG | - | chr8_3:51078158-51078177 | Msa1293630:five_prime_UTR | 30.0% |
| CTATTCCATGACAAATATGA+AGG | + | chr8_3:51078196-51078215 | None:intergenic | 30.0% | |
| CTTCATATTTGTCATGGAAT+AGG | - | chr8_3:51078194-51078213 | Msa1293630:five_prime_UTR | 30.0% | |
| GAAAGAGAGAGAAAGAGAAA+GGG | + | chr8_3:51073741-51073760 | None:intergenic | 35.0% | |
| AGAAAGAGAGAGAAAGAGAA+AGG | + | chr8_3:51073742-51073761 | None:intergenic | 35.0% | |
| GAGAAAGAGAGAGAAAGAAA+CGG | - | chr8_3:51073812-51073831 | Msa1293630:intron | 35.0% | |
| AGAATAAGAAGAAGGGTTAC+CGG | + | chr8_3:51073920-51073939 | None:intergenic | 35.0% | |
| TCTTTCAAGCTCTTTGCAAA+AGG | - | chr8_3:51074045-51074064 | Msa1293630:intron | 35.0% | |
| ! | ATTGGATTGGATTGAATTGG+TGG | - | chr8_3:51074082-51074101 | Msa1293630:intron | 35.0% |
| ! | TTGAATTGGTGGTTCTGTTA+TGG | - | chr8_3:51074093-51074112 | Msa1293630:intron | 35.0% |
| TAGTTGAAGAATGTGCTATG+AGG | - | chr8_3:51074928-51074947 | Msa1293630:intron | 35.0% | |
| ATGGAGTTAGACAATATGTG+TGG | - | chr8_3:51074964-51074983 | Msa1293630:intron | 35.0% | |
| ACAAACATATTTACCGCTTG+TGG | + | chr8_3:51075134-51075153 | None:intergenic | 35.0% | |
| ACCATCGTATTCATTCCTAT+TGG | - | chr8_3:51075261-51075280 | Msa1293630:intron | 35.0% | |
| TCCAATAGGAATGAATACGA+TGG | + | chr8_3:51075265-51075284 | None:intergenic | 35.0% | |
| ATAAGTGAAGCAACTCCAAT+AGG | + | chr8_3:51075279-51075298 | None:intergenic | 35.0% | |
| !! | TGTCCTTGTGCAAGTTTTAT+CGG | + | chr8_3:51075496-51075515 | None:intergenic | 35.0% |
| TTCACATTTACAATGCACAG+AGG | - | chr8_3:51075780-51075799 | Msa1293630:intron | 35.0% | |
| ! | GAAAGTGGTTTGAAGTAACA+AGG | - | chr8_3:51075802-51075821 | Msa1293630:intron | 35.0% |
| AAAGACGTCCAAACAATTGA+GGG | + | chr8_3:51075860-51075879 | None:intergenic | 35.0% | |
| TAATGGGAACACATGAAAAC+GGG | + | chr8_3:51075978-51075997 | None:intergenic | 35.0% | |
| ! | GTTTTCATGTGTTCCCATTA+TGG | - | chr8_3:51075978-51075997 | Msa1293630:intron | 35.0% |
| !! | GTTGTCGATCTAGCTATTTT+TGG | + | chr8_3:51076087-51076106 | None:intergenic | 35.0% |
| AAGCAAACAATCAAAGACAG+TGG | + | chr8_3:51076370-51076389 | None:intergenic | 35.0% | |
| CACCTGTAATATTACCATTC+TGG | + | chr8_3:51076763-51076782 | None:intergenic | 35.0% | |
| CAGAATGGTAATATTACAGG+TGG | - | chr8_3:51076761-51076780 | Msa1293630:CDS | 35.0% | |
| TACAATCACAAGATGAACAG+TGG | + | chr8_3:51077056-51077075 | None:intergenic | 35.0% | |
| CCATACAACTTCCTAAAAGT+TGG | + | chr8_3:51077193-51077212 | None:intergenic | 35.0% | |
| !! | CCAACTTTTAGGAAGTTGTA+TGG | - | chr8_3:51077190-51077209 | Msa1293630:intron | 35.0% |
| GAAGTTGTATGGAAAGATTG+AGG | - | chr8_3:51077201-51077220 | Msa1293630:intron | 35.0% | |
| ! | AGTAAGCGATTTTCTTACCT+TGG | + | chr8_3:51077430-51077449 | None:intergenic | 35.0% |
| GAAAACCCATGTATGAAGTA+AGG | + | chr8_3:51077526-51077545 | None:intergenic | 35.0% | |
| ATTCACTCTTTGCACACAAT+AGG | - | chr8_3:51077561-51077580 | Msa1293630:intron | 35.0% | |
| TTTGATCGCTGTCATATAGA+AGG | - | chr8_3:51077788-51077807 | Msa1293630:intron | 35.0% | |
| GAACGTGTAAGATGTTAATC+TGG | + | chr8_3:51077981-51078000 | None:intergenic | 35.0% | |
| ! | TCTCTTTGTTATAGGCAACT+TGG | - | chr8_3:51078166-51078185 | Msa1293630:five_prime_UTR | 35.0% |
| GAGATCCTTCATATTTGTCA+TGG | - | chr8_3:51078188-51078207 | Msa1293630:five_prime_UTR | 35.0% | |
| AATGACAGGAAATGGGATGA+AGG | + | chr8_3:51073864-51073883 | None:intergenic | 40.0% | |
| !!! | ACCTCATGGTTTTGGAAACT+TGG | - | chr8_3:51074348-51074367 | Msa1293630:intron | 40.0% |
| ACCAAGTTTCCAAAACCATG+AGG | + | chr8_3:51074352-51074371 | None:intergenic | 40.0% | |
| CAAACGAGCCAATCTAATTG+TGG | - | chr8_3:51074834-51074853 | Msa1293630:CDS | 40.0% | |
| TTACAATGCACAGAGGAAAG+TGG | - | chr8_3:51075787-51075806 | Msa1293630:intron | 40.0% | |
| CAAAGACGTCCAAACAATTG+AGG | + | chr8_3:51075861-51075880 | None:intergenic | 40.0% | |
| AATGGGAACACATGAAAACG+GGG | + | chr8_3:51075977-51075996 | None:intergenic | 40.0% | |
| CCCTCAATTGCTCATCATTT+CGG | + | chr8_3:51076526-51076545 | None:intergenic | 40.0% | |
| CCGAAATGATGAGCAATTGA+GGG | - | chr8_3:51076523-51076542 | Msa1293630:intron | 40.0% | |
| GGAAAAGCAAACTCAACAAG+TGG | - | chr8_3:51076551-51076570 | Msa1293630:CDS | 40.0% | |
| CACCATTTACATCACGTTCA+GGG | + | chr8_3:51076583-51076602 | None:intergenic | 40.0% | |
| ACACCATTTACATCACGTTC+AGG | + | chr8_3:51076584-51076603 | None:intergenic | 40.0% | |
| ATAAGACCACAAGGTACGAT+TGG | + | chr8_3:51076608-51076627 | None:intergenic | 40.0% | |
| !! | TACCTTGTGGTCTTATAGCT+TGG | - | chr8_3:51076612-51076631 | Msa1293630:CDS | 40.0% |
| ! | TCATCTCAACGAGAGTATAC+CGG | - | chr8_3:51076787-51076806 | Msa1293630:CDS | 40.0% |
| AGATGAACAGTGGAATACAC+TGG | + | chr8_3:51077046-51077065 | None:intergenic | 40.0% | |
| TATGAAACAGTTGAGTGAGC+AGG | - | chr8_3:51077132-51077151 | Msa1293630:intron | 40.0% | |
| AGGATCTTATCGTTTGGATG+CGG | - | chr8_3:51077155-51077174 | Msa1293630:intron | 40.0% | |
| GTTGTATGGAAAGATTGAGG+TGG | - | chr8_3:51077204-51077223 | Msa1293630:intron | 40.0% | |
| GAAAGGTGATGAGATAAACG+TGG | - | chr8_3:51077234-51077253 | Msa1293630:intron | 40.0% | |
| TTGTCAACTACTAGTTGGCT+TGG | - | chr8_3:51077310-51077329 | Msa1293630:intron | 40.0% | |
| GTGGAAAGAATGACTTCCTT+GGG | - | chr8_3:51077332-51077351 | Msa1293630:intron | 40.0% | |
| ATTGCTTATCTCTCTGTTGG+AGG | - | chr8_3:51077355-51077374 | Msa1293630:intron | 40.0% | |
| ! | TGGAGGATTGAGCTTCTTTT+TGG | - | chr8_3:51077372-51077391 | Msa1293630:intron | 40.0% |
| !! | ATTGAGCTTCTTTTTGGCCA+TGG | - | chr8_3:51077378-51077397 | Msa1293630:intron | 40.0% |
| CACTCTGCTCAATAACTTAC+TGG | - | chr8_3:51077846-51077865 | Msa1293630:intron | 40.0% | |
| TAATACACAAGGTCTCCTGA+GGG | + | chr8_3:51078274-51078293 | None:intergenic | 40.0% | |
| ATAATACACAAGGTCTCCTG+AGG | + | chr8_3:51078275-51078294 | None:intergenic | 40.0% | |
| AGAGAGAAAGAAACGGTCAC+CGG | - | chr8_3:51073819-51073838 | Msa1293630:intron | 45.0% | |
| AATGGGATGAAGGTTTCGTG+TGG | + | chr8_3:51073854-51073873 | None:intergenic | 45.0% | |
| CTTTCATCAACCTGCTCAAC+CGG | - | chr8_3:51073898-51073917 | Msa1293630:intron | 45.0% | |
| AAGATCATTGGATCCAACGC+TGG | + | chr8_3:51074125-51074144 | None:intergenic | 45.0% | |
| GTAAGAATAGGCTTGCATGC+TGG | + | chr8_3:51075110-51075129 | None:intergenic | 45.0% | |
| GCCTATTCTTACACCACAAG+CGG | - | chr8_3:51075118-51075137 | Msa1293630:intron | 45.0% | |
| ACCGCTTGTGGTGTAAGAAT+AGG | + | chr8_3:51075122-51075141 | None:intergenic | 45.0% | |
| CTGCCGATAAAACTTGCACA+AGG | - | chr8_3:51075490-51075509 | Msa1293630:CDS | 45.0% | |
| ACTTCTACCAGAATCACCGA+CGG | - | chr8_3:51075707-51075726 | Msa1293630:intron | 45.0% | |
| GCCGAAATGATGAGCAATTG+AGG | - | chr8_3:51076522-51076541 | Msa1293630:intron | 45.0% | |
| GACCCTGAACGTGATGTAAA+TGG | - | chr8_3:51076578-51076597 | Msa1293630:CDS | 45.0% | |
| CTCCAAGCTATAAGACCACA+AGG | + | chr8_3:51076617-51076636 | None:intergenic | 45.0% | |
| AGCAGGAGGATCTTATCGTT+TGG | - | chr8_3:51077149-51077168 | Msa1293630:intron | 45.0% | |
| TGGAAAGATTGAGGTGGATC+TGG | - | chr8_3:51077210-51077229 | Msa1293630:intron | 45.0% | |
| ATTGAGGTGGATCTGGAGAA+AGG | - | chr8_3:51077217-51077236 | Msa1293630:intron | 45.0% | |
| !! | TCAACTACTAGTTGGCTTGG+TGG | - | chr8_3:51077313-51077332 | Msa1293630:intron | 45.0% |
| GGTGGAAAGAATGACTTCCT+TGG | - | chr8_3:51077331-51077350 | Msa1293630:intron | 45.0% | |
| CAGAGAGATAAGCAATCCCA+AGG | + | chr8_3:51077351-51077370 | None:intergenic | 45.0% | |
| GGGATTGCTTATCTCTCTGT+TGG | - | chr8_3:51077352-51077371 | Msa1293630:intron | 45.0% | |
| TCATGGAATAGGAACCCATC+AGG | - | chr8_3:51078205-51078224 | Msa1293630:five_prime_UTR | 45.0% | |
| TCTCAGTTCAGTGACCTGAT+GGG | + | chr8_3:51078222-51078241 | None:intergenic | 45.0% | |
| TTCTCAGTTCAGTGACCTGA+TGG | + | chr8_3:51078223-51078242 | None:intergenic | 45.0% | |
| GGTCACTGAACTGAGAAACT+AGG | - | chr8_3:51078226-51078245 | Msa1293630:five_prime_UTR | 45.0% | |
| !!! | TAATTATAATATATACTTTT+CGG | - | chr8_3:51078032-51078051 | Msa1293630:intron | 5.0% |
| GTTATGGCAACAACCAGCGT+TGG | - | chr8_3:51074109-51074128 | Msa1293630:intron | 50.0% | |
| CAGCATGCGTACCGTCAAAT+TGG | - | chr8_3:51075439-51075458 | Msa1293630:CDS | 50.0% | |
| GCACAAGGACACTGCATGTA+TGG | - | chr8_3:51075505-51075524 | Msa1293630:CDS | 50.0% | |
| CAATGTACCGTCGGTGATTC+TGG | + | chr8_3:51075717-51075736 | None:intergenic | 50.0% | |
| GCGTACCTCCCTCAATTGTT+TGG | - | chr8_3:51075849-51075868 | Msa1293630:intron | 50.0% | |
| GACGTCCAAACAATTGAGGG+AGG | + | chr8_3:51075857-51075876 | None:intergenic | 50.0% | |
| GATGAGCAATTGAGGGATGC+TGG | - | chr8_3:51076530-51076549 | Msa1293630:intron | 50.0% | |
| GAAACAGTTGAGTGAGCAGG+AGG | - | chr8_3:51077135-51077154 | Msa1293630:intron | 50.0% | |
| ! | TATCGTTTGGATGCGGACTG+CGG | - | chr8_3:51077162-51077181 | Msa1293630:intron | 50.0% |
| ! | CTGCGGCTTTGCCAACTTTT+AGG | - | chr8_3:51077179-51077198 | Msa1293630:intron | 50.0% |
| CTAGGTGTGCATGATCTTCC+AGG | - | chr8_3:51078244-51078263 | Msa1293630:five_prime_UTR | 50.0% | |
| GATCTTCCAGGATTTCCCTC+AGG | - | chr8_3:51078256-51078275 | Msa1293630:five_prime_UTR | 50.0% | |
| ATGAAGGTTTCGTGTGGCGG+GGG | + | chr8_3:51073848-51073867 | None:intergenic | 55.0% | |
| GATGAAGGTTTCGTGTGGCG+GGG | + | chr8_3:51073849-51073868 | None:intergenic | 55.0% | |
| GGATGAAGGTTTCGTGTGGC+GGG | + | chr8_3:51073850-51073869 | None:intergenic | 55.0% | |
| GGGATGAAGGTTTCGTGTGG+CGG | + | chr8_3:51073851-51073870 | None:intergenic | 55.0% | |
| ! | AGAAGGGTTACCGGTTGAGC+AGG | + | chr8_3:51073911-51073930 | None:intergenic | 55.0% |
| GGTGTGCCAATCGTACCTTG+TGG | - | chr8_3:51076599-51076618 | Msa1293630:CDS | 55.0% | |
| AGGTCTCCTGAGGGAAATCC+TGG | + | chr8_3:51078265-51078284 | None:intergenic | 55.0% | |
| ! | AAGGTTTCGTGTGGCGGGGG+CGG | + | chr8_3:51073845-51073864 | None:intergenic | 65.0% |
| ! | TTTCGTGTGGCGGGGGCGGC+CGG | + | chr8_3:51073841-51073860 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 51073733 | 51078319 | 51073733 | ID=Msa1293630;Name=Msa1293630 |
| chr8_3 | mRNA | 51073733 | 51078319 | 51073733 | ID=Msa1293630-mRNA-1;Parent=Msa1293630;Name=Msa1293630-mRNA-1;_AED=0.20;_eAED=0.20;_QI=270|0.6|0.45|1|0.6|0.45|11|0|307 |
| chr8_3 | exon | 51073733 | 51073737 | 51073733 | ID=Msa1293630-mRNA-1:exon:14233;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51073826 | 51073872 | 51073826 | ID=Msa1293630-mRNA-1:exon:14232;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51074621 | 51074787 | 51074621 | ID=Msa1293630-mRNA-1:exon:14231;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51074797 | 51074910 | 51074797 | ID=Msa1293630-mRNA-1:exon:14230;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51075310 | 51075541 | 51075310 | ID=Msa1293630-mRNA-1:exon:14229;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51076324 | 51076394 | 51076324 | ID=Msa1293630-mRNA-1:exon:14228;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51076531 | 51076641 | 51076531 | ID=Msa1293630-mRNA-1:exon:14227;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51076741 | 51076815 | 51076741 | ID=Msa1293630-mRNA-1:exon:14226;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51076913 | 51076971 | 51076913 | ID=Msa1293630-mRNA-1:exon:14225;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51077876 | 51077998 | 51077876 | ID=Msa1293630-mRNA-1:exon:14224;Parent=Msa1293630-mRNA-1 |
| chr8_3 | exon | 51078133 | 51078319 | 51078133 | ID=Msa1293630-mRNA-1:exon:14223;Parent=Msa1293630-mRNA-1 |
| chr8_3 | five_prime_UTR | 51078133 | 51078319 | 51078133 | ID=Msa1293630-mRNA-1:five_prime_utr;Parent=Msa1293630-mRNA-1 |
| chr8_3 | five_prime_UTR | 51077916 | 51077998 | 51077916 | ID=Msa1293630-mRNA-1:five_prime_utr;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51077876 | 51077915 | 51077876 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51076913 | 51076971 | 51076913 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51076741 | 51076815 | 51076741 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51076531 | 51076641 | 51076531 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51076324 | 51076394 | 51076324 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51075310 | 51075541 | 51075310 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51074797 | 51074910 | 51074797 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51074621 | 51074787 | 51074621 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51073826 | 51073872 | 51073826 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| chr8_3 | CDS | 51073733 | 51073737 | 51073733 | ID=Msa1293630-mRNA-1:cds;Parent=Msa1293630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
