Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296010 | G7LFN7 | 72.581 | 62 | 17 | 0 | 2 | 63 | 24 | 85 | 5.80e-23 | 93.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0271550 | Msa1296010 | 0.807231 | 5.592649e-50 | -8.615850e-47 |
| Msa1162060 | Msa1296010 | 0.805706 | 1.172624e-49 | -8.615850e-47 |
| Msa0935770 | Msa1296010 | 0.801517 | 8.674445e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTGGTCCTTCTCTTGA+AGG | 0.407540 | 8_3:-54573569 | None:intergenic |
| TTGACTCCAAGCACCTTGTA+TGG | 0.438878 | 8_3:-54573491 | None:intergenic |
| GAATTTGTACATGGTGATGA+TGG | 0.463512 | 8_3:+54571657 | Msa1296010:exon |
| CATCACTAGCTCTCTCTCTC+AGG | 0.466693 | 8_3:-54573607 | None:intergenic |
| AGCACCTTGTATGGATGAGC+AGG | 0.491951 | 8_3:-54573482 | None:intergenic |
| CTCATCTCACTTGTCCGTGC+AGG | 0.499457 | 8_3:+54573524 | Msa1296010:CDS |
| AAAGTGGAGCTCACGTGACC+TGG | 0.513678 | 8_3:+54573633 | Msa1296010:CDS |
| AGAAGGACCACAATGTTGCT+TGG | 0.516113 | 8_3:+54573577 | Msa1296010:CDS |
| AGAGCTAGTGATGTTGAAAG+TGG | 0.517602 | 8_3:+54573617 | Msa1296010:CDS |
| GCTCATCCATACAAGGTGCT+TGG | 0.524786 | 8_3:+54573485 | Msa1296010:CDS |
| ATACAAGGTGCTTGGAGTCA+AGG | 0.534803 | 8_3:+54573493 | Msa1296010:CDS |
| TTAGCTTAGCTTGATCATCC+AGG | 0.542468 | 8_3:-54573651 | None:intergenic |
| TACAAGGTGCTTGGAGTCAA+GGG | 0.550009 | 8_3:+54573494 | Msa1296010:CDS |
| TGAATTTCAGAATTTGTACA+TGG | 0.555846 | 8_3:+54571648 | Msa1296010:exon |
| AATTTGTACATGGTGATGAT+GGG | 0.562436 | 8_3:+54571658 | Msa1296010:exon |
| AACGTGCCACGCGTCCTGCA+CGG | 0.574735 | 8_3:-54573538 | None:intergenic |
| GTTTCCTGCTCATCCATACA+AGG | 0.596784 | 8_3:+54573478 | Msa1296010:CDS |
| AAATATAAACATAAAGTCAA+CGG | 0.607982 | 8_3:-54571576 | None:intergenic |
| ACTTGTCCGTGCAGGACGCG+TGG | 0.618486 | 8_3:+54573532 | Msa1296010:CDS |
| TATGAGATACCTTCAAGAGA+AGG | 0.623188 | 8_3:+54573560 | Msa1296010:CDS |
| ACTCATTTGTACCAGGCGCG+TGG | 0.624278 | 8_3:+54573445 | Msa1296010:intron |
| TTTGTACATGGTGATGATGG+GGG | 0.626784 | 8_3:+54571660 | Msa1296010:exon |
| TTGTTGTCCAAGCAACATTG+TGG | 0.635670 | 8_3:-54573584 | None:intergenic |
| ATTTGTACATGGTGATGATG+GGG | 0.669187 | 8_3:+54571659 | Msa1296010:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACTAAAAAAAATAATTTAT+AGG | + | chr8_3:54573036-54573055 | Msa1296010:intron | 10.0% |
| !!! | TAAAAATCGAATAAATTTTA+GGG | - | chr8_3:54573116-54573135 | None:intergenic | 10.0% |
| !!! | ATAAAAATCGAATAAATTTT+AGG | - | chr8_3:54573117-54573136 | None:intergenic | 10.0% |
| !! | GACTAAAAAAAATAATTTAT+AGG | + | chr8_3:54573036-54573055 | Msa1296010:intron | 10.0% |
| !!! | TAAAAATCGAATAAATTTTA+GGG | - | chr8_3:54573116-54573135 | None:intergenic | 10.0% |
| !!! | ATAAAAATCGAATAAATTTT+AGG | - | chr8_3:54573117-54573136 | None:intergenic | 10.0% |
| !! | AAATATAAACATAAAGTCAA+CGG | - | chr8_3:54571579-54571598 | None:intergenic | 15.0% |
| !! | AGAAAGAATAAAAGAAATTA+GGG | - | chr8_3:54571773-54571792 | None:intergenic | 15.0% |
| !! | AAGAAAGAATAAAAGAAATT+AGG | - | chr8_3:54571774-54571793 | None:intergenic | 15.0% |
| !! | AAATTGTATAAATTACTGAT+AGG | + | chr8_3:54571837-54571856 | Msa1296010:intron | 15.0% |
| !! | TGTAAAAATTGTTACTAAAT+AGG | + | chr8_3:54572093-54572112 | Msa1296010:intron | 15.0% |
| !! | AAAAATCCTTCAAAAAAAAA+AGG | + | chr8_3:54573067-54573086 | Msa1296010:intron | 15.0% |
| !! | AAAATCCTTCAAAAAAAAAA+GGG | + | chr8_3:54573068-54573087 | Msa1296010:intron | 15.0% |
| !! | AAATATAAACATAAAGTCAA+CGG | - | chr8_3:54571579-54571598 | None:intergenic | 15.0% |
| !! | AGAAAGAATAAAAGAAATTA+GGG | - | chr8_3:54571773-54571792 | None:intergenic | 15.0% |
| !! | AAGAAAGAATAAAAGAAATT+AGG | - | chr8_3:54571774-54571793 | None:intergenic | 15.0% |
| !! | AAATTGTATAAATTACTGAT+AGG | + | chr8_3:54571837-54571856 | Msa1296010:intron | 15.0% |
| !! | TGTAAAAATTGTTACTAAAT+AGG | + | chr8_3:54572093-54572112 | Msa1296010:intron | 15.0% |
| !! | AAAAATCCTTCAAAAAAAAA+AGG | + | chr8_3:54573067-54573086 | Msa1296010:intron | 15.0% |
| !! | AAAATCCTTCAAAAAAAAAA+GGG | + | chr8_3:54573068-54573087 | Msa1296010:intron | 15.0% |
| !! | ATAGTGTTTGATAAAATTAC+CGG | + | chr8_3:54571939-54571958 | Msa1296010:intron | 20.0% |
| !! | ATAAGTAGCTATTATCTTAA+TGG | - | chr8_3:54572028-54572047 | None:intergenic | 20.0% |
| !!! | ATTATTGTTTTTTTCCTAAG+TGG | - | chr8_3:54572423-54572442 | None:intergenic | 20.0% |
| !!! | CAAATATTTTAGATGTTACA+AGG | - | chr8_3:54572900-54572919 | None:intergenic | 20.0% |
| !! | TCTTCAAATAAAGACTAAAA+TGG | + | chr8_3:54572929-54572948 | Msa1296010:intron | 20.0% |
| !! | AGACTAAAATGGATATTATA+AGG | + | chr8_3:54572940-54572959 | Msa1296010:intron | 20.0% |
| !!! | TGCATATTATACTCATTTTA+AGG | - | chr8_3:54573153-54573172 | None:intergenic | 20.0% |
| !! | TTTGTTTCATCAATTCTTTA+TGG | + | chr8_3:54573173-54573192 | Msa1296010:intron | 20.0% |
| !! | ATAGTGTTTGATAAAATTAC+CGG | + | chr8_3:54571939-54571958 | Msa1296010:intron | 20.0% |
| !! | ATAAGTAGCTATTATCTTAA+TGG | - | chr8_3:54572028-54572047 | None:intergenic | 20.0% |
| !!! | ATTATTGTTTTTTTCCTAAG+TGG | - | chr8_3:54572423-54572442 | None:intergenic | 20.0% |
| !!! | CAAATATTTTAGATGTTACA+AGG | - | chr8_3:54572900-54572919 | None:intergenic | 20.0% |
| !! | TCTTCAAATAAAGACTAAAA+TGG | + | chr8_3:54572929-54572948 | Msa1296010:intron | 20.0% |
| !! | AGACTAAAATGGATATTATA+AGG | + | chr8_3:54572940-54572959 | Msa1296010:intron | 20.0% |
| !!! | TGCATATTATACTCATTTTA+AGG | - | chr8_3:54573153-54573172 | None:intergenic | 20.0% |
| !! | TTTGTTTCATCAATTCTTTA+TGG | + | chr8_3:54573173-54573192 | Msa1296010:intron | 20.0% |
| !!! | TATGATTATTTCTTTTCGTG+CGG | + | chr8_3:54571614-54571633 | Msa1296010:five_prime_UTR | 25.0% |
| ! | TGAATTTCAGAATTTGTACA+TGG | + | chr8_3:54571648-54571667 | Msa1296010:exon | 25.0% |
| ! | TGCAAAATTATATTGTGGTT+TGG | - | chr8_3:54572205-54572224 | None:intergenic | 25.0% |
| ! | TGACAAAAAATAAGAACTAG+AGG | - | chr8_3:54572304-54572323 | None:intergenic | 25.0% |
| !! | TGTTACGTTGAACTTTAAAA+AGG | - | chr8_3:54572624-54572643 | None:intergenic | 25.0% |
| ! | AATCTTGTAAGGATTTAAAC+AGG | - | chr8_3:54572870-54572889 | None:intergenic | 25.0% |
| !!! | TAGTCATTTTAGAGTATTCT+TGG | - | chr8_3:54573290-54573309 | None:intergenic | 25.0% |
| !!! | AGAATACTCTAAAATGACTA+AGG | + | chr8_3:54573290-54573309 | Msa1296010:intron | 25.0% |
| ! | AATGAGTTATATGGATCTTA+GGG | - | chr8_3:54573432-54573451 | None:intergenic | 25.0% |
| ! | AAATGAGTTATATGGATCTT+AGG | - | chr8_3:54573433-54573452 | None:intergenic | 25.0% |
| !!! | TATGATTATTTCTTTTCGTG+CGG | + | chr8_3:54571614-54571633 | Msa1296010:five_prime_UTR | 25.0% |
| ! | TGAATTTCAGAATTTGTACA+TGG | + | chr8_3:54571648-54571667 | Msa1296010:exon | 25.0% |
| ! | TGCAAAATTATATTGTGGTT+TGG | - | chr8_3:54572205-54572224 | None:intergenic | 25.0% |
| ! | TGACAAAAAATAAGAACTAG+AGG | - | chr8_3:54572304-54572323 | None:intergenic | 25.0% |
| !! | TGTTACGTTGAACTTTAAAA+AGG | - | chr8_3:54572624-54572643 | None:intergenic | 25.0% |
| ! | AATCTTGTAAGGATTTAAAC+AGG | - | chr8_3:54572870-54572889 | None:intergenic | 25.0% |
| !!! | TAGTCATTTTAGAGTATTCT+TGG | - | chr8_3:54573290-54573309 | None:intergenic | 25.0% |
| !!! | AGAATACTCTAAAATGACTA+AGG | + | chr8_3:54573290-54573309 | Msa1296010:intron | 25.0% |
| ! | AATGAGTTATATGGATCTTA+GGG | - | chr8_3:54573432-54573451 | None:intergenic | 25.0% |
| ! | AAATGAGTTATATGGATCTT+AGG | - | chr8_3:54573433-54573452 | None:intergenic | 25.0% |
| ! | AATTTGTACATGGTGATGAT+GGG | + | chr8_3:54571658-54571677 | Msa1296010:exon | 30.0% |
| ! | GATAAAATTACCGGTTGATT+TGG | + | chr8_3:54571948-54571967 | Msa1296010:intron | 30.0% |
| TATTTACCAACCAAATCAAC+CGG | - | chr8_3:54571961-54571980 | None:intergenic | 30.0% | |
| GGGAATGCAAAATTATATTG+TGG | - | chr8_3:54572210-54572229 | None:intergenic | 30.0% | |
| ! | CAATATAATTTTGCATTCCC+AGG | + | chr8_3:54572210-54572229 | Msa1296010:intron | 30.0% |
| ! | AAGATTTGGAGTACAATATC+TGG | + | chr8_3:54572267-54572286 | Msa1296010:intron | 30.0% |
| AAGGATGAATCAATCTTGTA+AGG | - | chr8_3:54572881-54572900 | None:intergenic | 30.0% | |
| !!! | CAATGCCCTTTTTTTTTTGA+AGG | - | chr8_3:54573076-54573095 | None:intergenic | 30.0% |
| ATGAGTTATATGGATCTTAG+GGG | - | chr8_3:54573431-54573450 | None:intergenic | 30.0% | |
| ! | AATTTGTACATGGTGATGAT+GGG | + | chr8_3:54571658-54571677 | Msa1296010:exon | 30.0% |
| ! | GATAAAATTACCGGTTGATT+TGG | + | chr8_3:54571948-54571967 | Msa1296010:intron | 30.0% |
| TATTTACCAACCAAATCAAC+CGG | - | chr8_3:54571961-54571980 | None:intergenic | 30.0% | |
| GGGAATGCAAAATTATATTG+TGG | - | chr8_3:54572210-54572229 | None:intergenic | 30.0% | |
| ! | CAATATAATTTTGCATTCCC+AGG | + | chr8_3:54572210-54572229 | Msa1296010:intron | 30.0% |
| ! | AAGATTTGGAGTACAATATC+TGG | + | chr8_3:54572267-54572286 | Msa1296010:intron | 30.0% |
| AAGGATGAATCAATCTTGTA+AGG | - | chr8_3:54572881-54572900 | None:intergenic | 30.0% | |
| !!! | CAATGCCCTTTTTTTTTTGA+AGG | - | chr8_3:54573076-54573095 | None:intergenic | 30.0% |
| ATGAGTTATATGGATCTTAG+GGG | - | chr8_3:54573431-54573450 | None:intergenic | 30.0% | |
| !!! | AGAGGTAAGTTTTATTGCTC+TGG | + | chr8_3:54571534-54571553 | Msa1296010:five_prime_UTR | 35.0% |
| ! | GAATTTGTACATGGTGATGA+TGG | + | chr8_3:54571657-54571676 | Msa1296010:exon | 35.0% |
| ! | ATTTGTACATGGTGATGATG+GGG | + | chr8_3:54571659-54571678 | Msa1296010:exon | 35.0% |
| ! | CATGAACCAATTTGACTTAC+CGG | - | chr8_3:54571699-54571718 | None:intergenic | 35.0% |
| !! | AAATTACCGGTTGATTTGGT+TGG | + | chr8_3:54571952-54571971 | Msa1296010:intron | 35.0% |
| CTGGTTGTAGTTCAAAGATT+TGG | + | chr8_3:54572253-54572272 | Msa1296010:intron | 35.0% | |
| TCTACATTTGATTCAGAGTG+AGG | + | chr8_3:54572523-54572542 | Msa1296010:intron | 35.0% | |
| !! | CATTTTTCAGCTCACATTAG+AGG | - | chr8_3:54572690-54572709 | None:intergenic | 35.0% |
| ACAGGACAACAAAGATCAAA+AGG | - | chr8_3:54572852-54572871 | None:intergenic | 35.0% | |
| ACATACGCGAACAATAACAA+AGG | - | chr8_3:54573215-54573234 | None:intergenic | 35.0% | |
| ACAATAGATGAGCTATTCAG+TGG | + | chr8_3:54573246-54573265 | Msa1296010:intron | 35.0% | |
| TGACTAAGGTGAAAACACAA+TGG | + | chr8_3:54573304-54573323 | Msa1296010:intron | 35.0% | |
| TGAGTTATATGGATCTTAGG+GGG | - | chr8_3:54573430-54573449 | None:intergenic | 35.0% | |
| CCTGGTACAAATGAGTTATA+TGG | - | chr8_3:54573441-54573460 | None:intergenic | 35.0% | |
| CCATATAACTCATTTGTACC+AGG | + | chr8_3:54573438-54573457 | Msa1296010:intron | 35.0% | |
| TATGAGATACCTTCAAGAGA+AGG | + | chr8_3:54573560-54573579 | Msa1296010:CDS | 35.0% | |
| !!! | AGAGGTAAGTTTTATTGCTC+TGG | + | chr8_3:54571534-54571553 | Msa1296010:five_prime_UTR | 35.0% |
| ! | GAATTTGTACATGGTGATGA+TGG | + | chr8_3:54571657-54571676 | Msa1296010:exon | 35.0% |
| ! | ATTTGTACATGGTGATGATG+GGG | + | chr8_3:54571659-54571678 | Msa1296010:exon | 35.0% |
| ! | CATGAACCAATTTGACTTAC+CGG | - | chr8_3:54571699-54571718 | None:intergenic | 35.0% |
| !! | AAATTACCGGTTGATTTGGT+TGG | + | chr8_3:54571952-54571971 | Msa1296010:intron | 35.0% |
| CTGGTTGTAGTTCAAAGATT+TGG | + | chr8_3:54572253-54572272 | Msa1296010:intron | 35.0% | |
| TCTACATTTGATTCAGAGTG+AGG | + | chr8_3:54572523-54572542 | Msa1296010:intron | 35.0% | |
| !! | CATTTTTCAGCTCACATTAG+AGG | - | chr8_3:54572690-54572709 | None:intergenic | 35.0% |
| ACAGGACAACAAAGATCAAA+AGG | - | chr8_3:54572852-54572871 | None:intergenic | 35.0% | |
| ACATACGCGAACAATAACAA+AGG | - | chr8_3:54573215-54573234 | None:intergenic | 35.0% | |
| ACAATAGATGAGCTATTCAG+TGG | + | chr8_3:54573246-54573265 | Msa1296010:intron | 35.0% | |
| TGACTAAGGTGAAAACACAA+TGG | + | chr8_3:54573304-54573323 | Msa1296010:intron | 35.0% | |
| TGAGTTATATGGATCTTAGG+GGG | - | chr8_3:54573430-54573449 | None:intergenic | 35.0% | |
| CCTGGTACAAATGAGTTATA+TGG | - | chr8_3:54573441-54573460 | None:intergenic | 35.0% | |
| CCATATAACTCATTTGTACC+AGG | + | chr8_3:54573438-54573457 | Msa1296010:intron | 35.0% | |
| TATGAGATACCTTCAAGAGA+AGG | + | chr8_3:54573560-54573579 | Msa1296010:CDS | 35.0% | |
| !! | GATTATTTCTTTTCGTGCGG+AGG | + | chr8_3:54571617-54571636 | Msa1296010:five_prime_UTR | 40.0% |
| !! | TTTGTACATGGTGATGATGG+GGG | + | chr8_3:54571660-54571679 | Msa1296010:exon | 40.0% |
| CAAAAGATTGTAAGCTCGCA+AGG | + | chr8_3:54573014-54573033 | Msa1296010:intron | 40.0% | |
| ATTCAGTGGAGATGCATATG+AGG | + | chr8_3:54573260-54573279 | Msa1296010:intron | 40.0% | |
| GAATCCCTTTACTTCTCTCT+AGG | + | chr8_3:54573343-54573362 | Msa1296010:intron | 40.0% | |
| GACACCTAGAGAGAAGTAAA+GGG | - | chr8_3:54573350-54573369 | None:intergenic | 40.0% | |
| AGACACCTAGAGAGAAGTAA+AGG | - | chr8_3:54573351-54573370 | None:intergenic | 40.0% | |
| AAGAAAGTGAGGCCTACAAA+AGG | - | chr8_3:54573374-54573393 | None:intergenic | 40.0% | |
| CCTCACTTTCTTGACCTAAT+GGG | + | chr8_3:54573382-54573401 | Msa1296010:intron | 40.0% | |
| ATGGATCTTAGGGGGTTAAT+GGG | - | chr8_3:54573422-54573441 | None:intergenic | 40.0% | |
| TATGGATCTTAGGGGGTTAA+TGG | - | chr8_3:54573423-54573442 | None:intergenic | 40.0% | |
| TTGTTGTCCAAGCAACATTG+TGG | - | chr8_3:54573587-54573606 | None:intergenic | 40.0% | |
| AGAGCTAGTGATGTTGAAAG+TGG | + | chr8_3:54573617-54573636 | Msa1296010:CDS | 40.0% | |
| ! | TTAGCTTAGCTTGATCATCC+AGG | - | chr8_3:54573654-54573673 | None:intergenic | 40.0% |
| !! | GATTATTTCTTTTCGTGCGG+AGG | + | chr8_3:54571617-54571636 | Msa1296010:five_prime_UTR | 40.0% |
| !! | TTTGTACATGGTGATGATGG+GGG | + | chr8_3:54571660-54571679 | Msa1296010:exon | 40.0% |
| CAAAAGATTGTAAGCTCGCA+AGG | + | chr8_3:54573014-54573033 | Msa1296010:intron | 40.0% | |
| ATTCAGTGGAGATGCATATG+AGG | + | chr8_3:54573260-54573279 | Msa1296010:intron | 40.0% | |
| GAATCCCTTTACTTCTCTCT+AGG | + | chr8_3:54573343-54573362 | Msa1296010:intron | 40.0% | |
| GACACCTAGAGAGAAGTAAA+GGG | - | chr8_3:54573350-54573369 | None:intergenic | 40.0% | |
| AGACACCTAGAGAGAAGTAA+AGG | - | chr8_3:54573351-54573370 | None:intergenic | 40.0% | |
| AAGAAAGTGAGGCCTACAAA+AGG | - | chr8_3:54573374-54573393 | None:intergenic | 40.0% | |
| CCTCACTTTCTTGACCTAAT+GGG | + | chr8_3:54573382-54573401 | Msa1296010:intron | 40.0% | |
| ATGGATCTTAGGGGGTTAAT+GGG | - | chr8_3:54573422-54573441 | None:intergenic | 40.0% | |
| TATGGATCTTAGGGGGTTAA+TGG | - | chr8_3:54573423-54573442 | None:intergenic | 40.0% | |
| TTGTTGTCCAAGCAACATTG+TGG | - | chr8_3:54573587-54573606 | None:intergenic | 40.0% | |
| AGAGCTAGTGATGTTGAAAG+TGG | + | chr8_3:54573617-54573636 | Msa1296010:CDS | 40.0% | |
| ! | TTAGCTTAGCTTGATCATCC+AGG | - | chr8_3:54573654-54573673 | None:intergenic | 40.0% |
| ! | TATTTCTTTTCGTGCGGAGG+TGG | + | chr8_3:54571620-54571639 | Msa1296010:five_prime_UTR | 45.0% |
| !!! | GGTGATGATGGGGGATTTTA+TGG | + | chr8_3:54571669-54571688 | Msa1296010:CDS | 45.0% |
| !! | TGGGGGATTTTATGGATTGC+CGG | + | chr8_3:54571677-54571696 | Msa1296010:CDS | 45.0% |
| GGATTGCCGGTAAGTCAAAT+TGG | + | chr8_3:54571690-54571709 | Msa1296010:intron | 45.0% | |
| ! | TAATTTTGCATTCCCAGGCC+AGG | + | chr8_3:54572215-54572234 | Msa1296010:intron | 45.0% |
| ! | AATTTTGCATTCCCAGGCCA+GGG | + | chr8_3:54572216-54572235 | Msa1296010:intron | 45.0% |
| ! | TCATGTTTCTGCTGCCACTT+AGG | + | chr8_3:54572406-54572425 | Msa1296010:intron | 45.0% |
| !! | AAGCCTTGGTTGGTAGAACA+AGG | + | chr8_3:54572465-54572484 | Msa1296010:intron | 45.0% |
| ! | ATGCCTTGTTCTACCAACCA+AGG | - | chr8_3:54572471-54572490 | None:intergenic | 45.0% |
| ! | CAATGCCTCTCGTTACTTTG+TGG | - | chr8_3:54572494-54572513 | None:intergenic | 45.0% |
| ! | CTCTAGGTGTCTCCTTTTGT+AGG | + | chr8_3:54573359-54573378 | Msa1296010:intron | 45.0% |
| GCCTCACTTTCTTGACCTAA+TGG | + | chr8_3:54573381-54573400 | Msa1296010:intron | 45.0% | |
| CCCATTAGGTCAAGAAAGTG+AGG | - | chr8_3:54573385-54573404 | None:intergenic | 45.0% | |
| GTTTCCTGCTCATCCATACA+AGG | + | chr8_3:54573478-54573497 | Msa1296010:CDS | 45.0% | |
| TTGACTCCAAGCACCTTGTA+TGG | - | chr8_3:54573494-54573513 | None:intergenic | 45.0% | |
| ! | ATACAAGGTGCTTGGAGTCA+AGG | + | chr8_3:54573493-54573512 | Msa1296010:CDS | 45.0% |
| ! | TACAAGGTGCTTGGAGTCAA+GGG | + | chr8_3:54573494-54573513 | Msa1296010:CDS | 45.0% |
| CATTGTGGTCCTTCTCTTGA+AGG | - | chr8_3:54573572-54573591 | None:intergenic | 45.0% | |
| AGAAGGACCACAATGTTGCT+TGG | + | chr8_3:54573577-54573596 | Msa1296010:CDS | 45.0% | |
| ! | TATTTCTTTTCGTGCGGAGG+TGG | + | chr8_3:54571620-54571639 | Msa1296010:five_prime_UTR | 45.0% |
| !!! | GGTGATGATGGGGGATTTTA+TGG | + | chr8_3:54571669-54571688 | Msa1296010:CDS | 45.0% |
| !! | TGGGGGATTTTATGGATTGC+CGG | + | chr8_3:54571677-54571696 | Msa1296010:CDS | 45.0% |
| GGATTGCCGGTAAGTCAAAT+TGG | + | chr8_3:54571690-54571709 | Msa1296010:intron | 45.0% | |
| ! | TAATTTTGCATTCCCAGGCC+AGG | + | chr8_3:54572215-54572234 | Msa1296010:intron | 45.0% |
| ! | AATTTTGCATTCCCAGGCCA+GGG | + | chr8_3:54572216-54572235 | Msa1296010:intron | 45.0% |
| ! | TCATGTTTCTGCTGCCACTT+AGG | + | chr8_3:54572406-54572425 | Msa1296010:intron | 45.0% |
| !! | AAGCCTTGGTTGGTAGAACA+AGG | + | chr8_3:54572465-54572484 | Msa1296010:intron | 45.0% |
| ! | ATGCCTTGTTCTACCAACCA+AGG | - | chr8_3:54572471-54572490 | None:intergenic | 45.0% |
| ! | CAATGCCTCTCGTTACTTTG+TGG | - | chr8_3:54572494-54572513 | None:intergenic | 45.0% |
| ! | CTCTAGGTGTCTCCTTTTGT+AGG | + | chr8_3:54573359-54573378 | Msa1296010:intron | 45.0% |
| GCCTCACTTTCTTGACCTAA+TGG | + | chr8_3:54573381-54573400 | Msa1296010:intron | 45.0% | |
| CCCATTAGGTCAAGAAAGTG+AGG | - | chr8_3:54573385-54573404 | None:intergenic | 45.0% | |
| GTTTCCTGCTCATCCATACA+AGG | + | chr8_3:54573478-54573497 | Msa1296010:CDS | 45.0% | |
| TTGACTCCAAGCACCTTGTA+TGG | - | chr8_3:54573494-54573513 | None:intergenic | 45.0% | |
| ! | ATACAAGGTGCTTGGAGTCA+AGG | + | chr8_3:54573493-54573512 | Msa1296010:CDS | 45.0% |
| ! | TACAAGGTGCTTGGAGTCAA+GGG | + | chr8_3:54573494-54573513 | Msa1296010:CDS | 45.0% |
| CATTGTGGTCCTTCTCTTGA+AGG | - | chr8_3:54573572-54573591 | None:intergenic | 45.0% | |
| AGAAGGACCACAATGTTGCT+TGG | + | chr8_3:54573577-54573596 | Msa1296010:CDS | 45.0% | |
| !! | CTATTAAAATAATAAAATTT+AGG | + | chr8_3:54572750-54572769 | Msa1296010:intron | 5.0% |
| !! | CTATTAAAATAATAAAATTT+AGG | + | chr8_3:54572750-54572769 | Msa1296010:intron | 5.0% |
| ! | ATTTTGCATTCCCAGGCCAG+GGG | + | chr8_3:54572217-54572236 | Msa1296010:intron | 50.0% |
| ACTACAACCAGTGCGTAGTC+AGG | - | chr8_3:54572244-54572263 | None:intergenic | 50.0% | |
| CTCTTGCAAGTTGCAAGCCT+TGG | + | chr8_3:54572451-54572470 | Msa1296010:intron | 50.0% | |
| TGCAAGTTGCAAGCCTTGGT+TGG | + | chr8_3:54572455-54572474 | Msa1296010:intron | 50.0% | |
| GGCATCCACAAAGTAACGAG+AGG | + | chr8_3:54572486-54572505 | Msa1296010:intron | 50.0% | |
| !! | AACGAGAGGCATTGCTAGTG+TGG | + | chr8_3:54572500-54572519 | Msa1296010:intron | 50.0% |
| ! | GTTAATGGGCCTGAACAGAG+AGG | - | chr8_3:54573408-54573427 | None:intergenic | 50.0% |
| AGCACCTTGTATGGATGAGC+AGG | - | chr8_3:54573485-54573504 | None:intergenic | 50.0% | |
| ! | GCTCATCCATACAAGGTGCT+TGG | + | chr8_3:54573485-54573504 | Msa1296010:CDS | 50.0% |
| ! | CATCACTAGCTCTCTCTCTC+AGG | - | chr8_3:54573610-54573629 | None:intergenic | 50.0% |
| ! | ATTTTGCATTCCCAGGCCAG+GGG | + | chr8_3:54572217-54572236 | Msa1296010:intron | 50.0% |
| ACTACAACCAGTGCGTAGTC+AGG | - | chr8_3:54572244-54572263 | None:intergenic | 50.0% | |
| CTCTTGCAAGTTGCAAGCCT+TGG | + | chr8_3:54572451-54572470 | Msa1296010:intron | 50.0% | |
| TGCAAGTTGCAAGCCTTGGT+TGG | + | chr8_3:54572455-54572474 | Msa1296010:intron | 50.0% | |
| GGCATCCACAAAGTAACGAG+AGG | + | chr8_3:54572486-54572505 | Msa1296010:intron | 50.0% | |
| !! | AACGAGAGGCATTGCTAGTG+TGG | + | chr8_3:54572500-54572519 | Msa1296010:intron | 50.0% |
| ! | GTTAATGGGCCTGAACAGAG+AGG | - | chr8_3:54573408-54573427 | None:intergenic | 50.0% |
| AGCACCTTGTATGGATGAGC+AGG | - | chr8_3:54573485-54573504 | None:intergenic | 50.0% | |
| ! | GCTCATCCATACAAGGTGCT+TGG | + | chr8_3:54573485-54573504 | Msa1296010:CDS | 50.0% |
| ! | CATCACTAGCTCTCTCTCTC+AGG | - | chr8_3:54573610-54573629 | None:intergenic | 50.0% |
| CCTGAACAGAGAGGCCCATT+AGG | - | chr8_3:54573399-54573418 | None:intergenic | 55.0% | |
| ! | CCTAATGGGCCTCTCTGTTC+AGG | + | chr8_3:54573396-54573415 | Msa1296010:intron | 55.0% |
| ACTCATTTGTACCAGGCGCG+TGG | + | chr8_3:54573445-54573464 | Msa1296010:intron | 55.0% | |
| CTCATCTCACTTGTCCGTGC+AGG | + | chr8_3:54573524-54573543 | Msa1296010:CDS | 55.0% | |
| AAAGTGGAGCTCACGTGACC+TGG | + | chr8_3:54573633-54573652 | Msa1296010:CDS | 55.0% | |
| CCTGAACAGAGAGGCCCATT+AGG | - | chr8_3:54573399-54573418 | None:intergenic | 55.0% | |
| ! | CCTAATGGGCCTCTCTGTTC+AGG | + | chr8_3:54573396-54573415 | Msa1296010:intron | 55.0% |
| ACTCATTTGTACCAGGCGCG+TGG | + | chr8_3:54573445-54573464 | Msa1296010:intron | 55.0% | |
| CTCATCTCACTTGTCCGTGC+AGG | + | chr8_3:54573524-54573543 | Msa1296010:CDS | 55.0% | |
| AAAGTGGAGCTCACGTGACC+TGG | + | chr8_3:54573633-54573652 | Msa1296010:CDS | 55.0% | |
| GTAGTCAGGACCCCTGGCCT+GGG | - | chr8_3:54572230-54572249 | None:intergenic | 65.0% | |
| CAGTGCGTAGTCAGGACCCC+TGG | - | chr8_3:54572236-54572255 | None:intergenic | 65.0% | |
| CAGGGGTCCTGACTACGCAC+TGG | + | chr8_3:54572234-54572253 | Msa1296010:intron | 65.0% | |
| ! | CACGATTAGCTCCACGCGCC+TGG | - | chr8_3:54573459-54573478 | None:intergenic | 65.0% |
| ACTTGTCCGTGCAGGACGCG+TGG | + | chr8_3:54573532-54573551 | Msa1296010:CDS | 65.0% | |
| AACGTGCCACGCGTCCTGCA+CGG | - | chr8_3:54573541-54573560 | None:intergenic | 65.0% | |
| GTAGTCAGGACCCCTGGCCT+GGG | - | chr8_3:54572230-54572249 | None:intergenic | 65.0% | |
| CAGTGCGTAGTCAGGACCCC+TGG | - | chr8_3:54572236-54572255 | None:intergenic | 65.0% | |
| CAGGGGTCCTGACTACGCAC+TGG | + | chr8_3:54572234-54572253 | Msa1296010:intron | 65.0% | |
| ! | CACGATTAGCTCCACGCGCC+TGG | - | chr8_3:54573459-54573478 | None:intergenic | 65.0% |
| ACTTGTCCGTGCAGGACGCG+TGG | + | chr8_3:54573532-54573551 | Msa1296010:CDS | 65.0% | |
| AACGTGCCACGCGTCCTGCA+CGG | - | chr8_3:54573541-54573560 | None:intergenic | 65.0% | |
| CGTAGTCAGGACCCCTGGCC+TGG | - | chr8_3:54572231-54572250 | None:intergenic | 70.0% | |
| CGTAGTCAGGACCCCTGGCC+TGG | - | chr8_3:54572231-54572250 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 54571519 | 54573673 | 54571519 | ID=Msa1296010;Name=Msa1296010 |
| chr8_3 | mRNA | 54571519 | 54573673 | 54571519 | ID=Msa1296010-mRNA-1;Parent=Msa1296010;Name=Msa1296010-mRNA-1;_AED=0.38;_eAED=0.72;_QI=148|0|0.5|1|1|1|2|0|81 |
| chr8_3 | exon | 54571519 | 54571698 | 54571519 | ID=Msa1296010-mRNA-1:exon:15675;Parent=Msa1296010-mRNA-1 |
| chr8_3 | exon | 54573460 | 54573673 | 54573460 | ID=Msa1296010-mRNA-1:exon:15676;Parent=Msa1296010-mRNA-1 |
| chr8_3 | five_prime_UTR | 54571519 | 54571666 | 54571519 | ID=Msa1296010-mRNA-1:five_prime_utr;Parent=Msa1296010-mRNA-1 |
| chr8_3 | CDS | 54571667 | 54571698 | 54571667 | ID=Msa1296010-mRNA-1:cds;Parent=Msa1296010-mRNA-1 |
| chr8_3 | CDS | 54573460 | 54573673 | 54573460 | ID=Msa1296010-mRNA-1:cds;Parent=Msa1296010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
