Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297370 | sp|Q9T072|BH025_ARATH | 49.171 | 181 | 83 | 4 | 25 | 205 | 133 | 304 | 1.28e-44 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297370 | G7JGD7 | 90.291 | 206 | 17 | 2 | 2 | 206 | 26 | 229 | 1.59e-114 | 336 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1297370 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1133350 | Msa1297370 | 0.936914 | 8.090055e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297370 | MtrunA17_Chr4g0054571 | 90.291 | 206 | 17 | 2 | 2 | 206 | 106 | 309 | 3.11e-117 | 336 |
| Msa1297370 | MtrunA17_Chr5g0400661 | 54.146 | 205 | 84 | 4 | 6 | 206 | 116 | 314 | 6.92e-59 | 188 |
| Msa1297370 | MtrunA17_Chr2g0280161 | 53.988 | 163 | 65 | 4 | 45 | 206 | 177 | 330 | 1.98e-47 | 159 |
| Msa1297370 | MtrunA17_Chr4g0049331 | 56.442 | 163 | 60 | 4 | 45 | 206 | 135 | 287 | 1.74e-46 | 155 |
| Msa1297370 | MtrunA17_Chr5g0400621 | 47.596 | 208 | 93 | 5 | 2 | 206 | 115 | 309 | 3.24e-46 | 155 |
| Msa1297370 | MtrunA17_Chr4g0002801 | 43.939 | 198 | 100 | 4 | 15 | 206 | 118 | 310 | 6.52e-41 | 141 |
| Msa1297370 | MtrunA17_Chr7g0225901 | 45.029 | 171 | 83 | 3 | 37 | 206 | 80 | 240 | 1.03e-40 | 139 |
| Msa1297370 | MtrunA17_Chr4g0054581 | 43.439 | 221 | 100 | 6 | 3 | 206 | 142 | 354 | 1.93e-40 | 141 |
| Msa1297370 | MtrunA17_Chr5g0400641 | 47.799 | 159 | 74 | 3 | 48 | 206 | 1 | 150 | 7.77e-40 | 134 |
| Msa1297370 | MtrunA17_Chr2g0307131 | 42.857 | 189 | 97 | 3 | 19 | 206 | 153 | 331 | 1.41e-38 | 136 |
| Msa1297370 | MtrunA17_Chr6g0468491 | 44.444 | 171 | 84 | 3 | 37 | 206 | 129 | 289 | 2.34e-38 | 134 |
| Msa1297370 | MtrunA17_Chr4g0054561 | 45.783 | 166 | 71 | 4 | 45 | 206 | 155 | 305 | 3.84e-37 | 131 |
| Msa1297370 | MtrunA17_Chr4g0033391 | 43.787 | 169 | 75 | 3 | 42 | 206 | 144 | 296 | 1.17e-35 | 127 |
| Msa1297370 | MtrunA17_Chr2g0307141 | 45.399 | 163 | 78 | 3 | 45 | 206 | 183 | 335 | 1.81e-35 | 128 |
| Msa1297370 | MtrunA17_Chr4g0002781 | 42.045 | 176 | 94 | 3 | 32 | 206 | 161 | 329 | 1.84e-35 | 127 |
| Msa1297370 | MtrunA17_Chr4g0033291 | 44.509 | 173 | 84 | 2 | 34 | 206 | 144 | 304 | 4.17e-35 | 126 |
| Msa1297370 | MtrunA17_Chr2g0333621 | 41.791 | 201 | 102 | 6 | 8 | 206 | 104 | 291 | 1.46e-34 | 124 |
| Msa1297370 | MtrunA17_Chr4g0054551 | 43.558 | 163 | 79 | 3 | 45 | 206 | 155 | 305 | 1.39e-33 | 122 |
| Msa1297370 | MtrunA17_Chr2g0333641 | 44.068 | 177 | 85 | 6 | 31 | 206 | 124 | 287 | 1.06e-32 | 119 |
| Msa1297370 | MtrunA17_Chr4g0054621 | 40.761 | 184 | 90 | 3 | 24 | 206 | 152 | 317 | 3.67e-32 | 119 |
| Msa1297370 | MtrunA17_Chr6g0468461 | 40.110 | 182 | 86 | 2 | 26 | 207 | 154 | 312 | 4.81e-32 | 119 |
| Msa1297370 | MtrunA17_Chr4g0033281 | 43.275 | 171 | 84 | 2 | 36 | 206 | 144 | 301 | 2.07e-30 | 114 |
| Msa1297370 | MtrunA17_Chr5g0400671 | 37.778 | 180 | 100 | 1 | 28 | 207 | 137 | 304 | 1.29e-29 | 112 |
| Msa1297370 | MtrunA17_Chr8g0336681 | 42.424 | 165 | 87 | 3 | 45 | 206 | 156 | 315 | 2.30e-29 | 111 |
| Msa1297370 | MtrunA17_Chr2g0333611 | 39.157 | 166 | 80 | 4 | 46 | 206 | 46 | 195 | 3.89e-28 | 105 |
| Msa1297370 | MtrunA17_Chr7g0249811 | 37.037 | 162 | 84 | 1 | 45 | 206 | 165 | 308 | 6.40e-24 | 97.1 |
| Msa1297370 | MtrunA17_Chr8g0365711 | 32.402 | 179 | 117 | 2 | 25 | 203 | 224 | 398 | 4.77e-23 | 95.5 |
| Msa1297370 | MtrunA17_Chr2g0333541 | 36.612 | 183 | 103 | 4 | 25 | 206 | 78 | 248 | 2.71e-20 | 86.3 |
| Msa1297370 | MtrunA17_Chr8g0366751 | 35.762 | 151 | 87 | 3 | 45 | 189 | 462 | 608 | 8.87e-17 | 78.2 |
| Msa1297370 | MtrunA17_Chr7g0275821 | 54.237 | 59 | 27 | 0 | 45 | 103 | 252 | 310 | 3.82e-16 | 75.9 |
| Msa1297370 | MtrunA17_Chr8g0346161 | 35.507 | 138 | 77 | 4 | 30 | 165 | 276 | 403 | 2.23e-15 | 73.9 |
| Msa1297370 | MtrunA17_Chr7g0260841 | 55.556 | 54 | 24 | 0 | 45 | 98 | 355 | 408 | 6.33e-15 | 72.8 |
| Msa1297370 | MtrunA17_Chr5g0411341 | 42.045 | 88 | 42 | 1 | 11 | 98 | 468 | 546 | 8.91e-15 | 72.4 |
| Msa1297370 | MtrunA17_Chr8g0346151 | 30.435 | 161 | 102 | 3 | 2 | 162 | 241 | 391 | 2.22e-14 | 70.9 |
| Msa1297370 | MtrunA17_Chr1g0185621 | 46.032 | 63 | 34 | 0 | 45 | 107 | 475 | 537 | 6.21e-14 | 69.7 |
| Msa1297370 | MtrunA17_Chr7g0233441 | 33.813 | 139 | 73 | 4 | 68 | 206 | 57 | 176 | 1.97e-13 | 66.2 |
| Msa1297370 | MtrunA17_Chr4g0002831 | 31.098 | 164 | 91 | 4 | 44 | 206 | 42 | 184 | 3.03e-13 | 65.9 |
| Msa1297370 | MtrunA17_Chr3g0131691 | 27.273 | 198 | 116 | 6 | 13 | 200 | 275 | 454 | 4.20e-13 | 67.4 |
| Msa1297370 | MtrunA17_Chr4g0002851 | 30.464 | 151 | 77 | 3 | 56 | 206 | 54 | 176 | 5.74e-13 | 65.1 |
| Msa1297370 | MtrunA17_Chr2g0320291 | 31.111 | 135 | 81 | 2 | 47 | 181 | 135 | 257 | 1.24e-12 | 65.5 |
| Msa1297370 | MtrunA17_Chr7g0252041 | 27.500 | 160 | 109 | 3 | 46 | 200 | 287 | 444 | 1.63e-12 | 65.5 |
| Msa1297370 | MtrunA17_Chr1g0190731 | 34.951 | 103 | 60 | 1 | 43 | 145 | 201 | 296 | 1.09e-11 | 62.8 |
| Msa1297370 | MtrunA17_Chr1g0211081 | 44.068 | 59 | 33 | 0 | 47 | 105 | 319 | 377 | 2.01e-11 | 62.4 |
| Msa1297370 | MtrunA17_Chr4g0028071 | 26.250 | 160 | 102 | 4 | 47 | 202 | 151 | 298 | 2.26e-11 | 62.0 |
| Msa1297370 | MtrunA17_Chr4g0074161 | 34.146 | 164 | 89 | 5 | 43 | 201 | 214 | 363 | 2.34e-11 | 62.0 |
| Msa1297370 | MtrunA17_Chr2g0298751 | 28.144 | 167 | 106 | 5 | 46 | 203 | 53 | 214 | 3.27e-11 | 60.8 |
| Msa1297370 | MtrunA17_Chr7g0270871 | 53.846 | 52 | 24 | 0 | 46 | 97 | 213 | 264 | 6.25e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1297370 | AT4G37850.2 | 49.171 | 181 | 83 | 4 | 25 | 205 | 133 | 304 | 1.30e-45 | 154 |
| Msa1297370 | AT4G37850.1 | 49.171 | 181 | 83 | 4 | 25 | 205 | 133 | 304 | 1.30e-45 | 154 |
| Msa1297370 | AT2G22750.1 | 51.705 | 176 | 79 | 4 | 30 | 205 | 112 | 281 | 8.45e-38 | 133 |
| Msa1297370 | AT2G22750.2 | 51.705 | 176 | 79 | 4 | 30 | 205 | 112 | 281 | 9.21e-38 | 133 |
| Msa1297370 | AT2G22750.3 | 51.705 | 176 | 79 | 4 | 30 | 205 | 140 | 309 | 1.40e-37 | 133 |
| Msa1297370 | AT2G22750.4 | 51.705 | 176 | 79 | 4 | 30 | 205 | 140 | 309 | 1.47e-37 | 133 |
| Msa1297370 | AT2G22750.5 | 51.705 | 176 | 79 | 4 | 30 | 205 | 136 | 305 | 1.74e-37 | 133 |
| Msa1297370 | AT2G22760.2 | 40.884 | 181 | 93 | 4 | 33 | 206 | 101 | 274 | 8.46e-35 | 125 |
| Msa1297370 | AT2G22760.1 | 40.331 | 181 | 94 | 4 | 33 | 206 | 101 | 274 | 3.02e-34 | 124 |
| Msa1297370 | AT2G22770.1 | 38.372 | 172 | 100 | 2 | 41 | 206 | 128 | 299 | 4.76e-30 | 113 |
| Msa1297370 | AT2G46510.1 | 58.929 | 56 | 23 | 0 | 45 | 100 | 395 | 450 | 1.58e-17 | 80.9 |
| Msa1297370 | AT5G46760.1 | 34.437 | 151 | 82 | 4 | 45 | 189 | 415 | 554 | 6.60e-17 | 79.0 |
| Msa1297370 | AT4G29930.3 | 29.592 | 196 | 114 | 6 | 27 | 206 | 39 | 226 | 5.56e-16 | 74.7 |
| Msa1297370 | AT4G29930.7 | 29.592 | 196 | 114 | 6 | 27 | 206 | 39 | 226 | 5.56e-16 | 74.7 |
| Msa1297370 | AT1G01260.1 | 29.310 | 174 | 77 | 4 | 18 | 188 | 415 | 545 | 1.53e-15 | 75.1 |
| Msa1297370 | AT1G01260.2 | 29.310 | 174 | 77 | 4 | 18 | 188 | 415 | 545 | 1.53e-15 | 75.1 |
| Msa1297370 | AT1G01260.3 | 29.310 | 174 | 77 | 4 | 18 | 188 | 415 | 545 | 1.53e-15 | 75.1 |
| Msa1297370 | AT4G29930.1 | 29.231 | 195 | 114 | 6 | 27 | 205 | 39 | 225 | 2.48e-15 | 72.8 |
| Msa1297370 | AT2G16910.1 | 29.193 | 161 | 101 | 3 | 46 | 193 | 315 | 475 | 3.54e-15 | 73.9 |
| Msa1297370 | AT1G32640.1 | 62.000 | 50 | 19 | 0 | 45 | 94 | 452 | 501 | 1.21e-14 | 72.4 |
| Msa1297370 | AT4G17880.1 | 32.468 | 154 | 77 | 3 | 45 | 189 | 416 | 551 | 3.12e-14 | 71.2 |
| Msa1297370 | AT5G58010.1 | 34.667 | 150 | 77 | 5 | 43 | 186 | 107 | 241 | 3.36e-14 | 70.1 |
| Msa1297370 | AT4G29930.5 | 28.495 | 186 | 100 | 6 | 27 | 206 | 39 | 197 | 9.82e-14 | 68.2 |
| Msa1297370 | AT4G16430.1 | 35.165 | 91 | 50 | 1 | 8 | 98 | 292 | 373 | 1.21e-13 | 69.3 |
| Msa1297370 | AT4G29930.6 | 27.473 | 182 | 108 | 5 | 27 | 205 | 39 | 199 | 3.85e-13 | 66.2 |
| Msa1297370 | AT1G12860.2 | 30.000 | 160 | 99 | 3 | 46 | 200 | 268 | 419 | 4.19e-13 | 67.8 |
| Msa1297370 | AT1G12860.1 | 30.000 | 160 | 99 | 3 | 46 | 200 | 268 | 419 | 4.59e-13 | 67.4 |
| Msa1297370 | AT4G29930.2 | 28.108 | 185 | 100 | 6 | 27 | 205 | 39 | 196 | 5.42e-13 | 65.9 |
| Msa1297370 | AT5G57150.3 | 28.261 | 184 | 116 | 5 | 34 | 202 | 35 | 217 | 1.04e-12 | 65.1 |
| Msa1297370 | AT4G09820.1 | 27.536 | 138 | 71 | 2 | 46 | 183 | 364 | 472 | 1.10e-12 | 66.6 |
| Msa1297370 | AT5G57150.2 | 27.568 | 185 | 118 | 5 | 34 | 203 | 35 | 218 | 1.17e-12 | 65.1 |
| Msa1297370 | AT5G57150.5 | 28.655 | 171 | 109 | 4 | 34 | 192 | 34 | 203 | 1.75e-12 | 64.3 |
| Msa1297370 | AT5G57150.4 | 28.655 | 171 | 109 | 4 | 34 | 192 | 35 | 204 | 1.78e-12 | 65.1 |
| Msa1297370 | AT5G57150.1 | 28.655 | 171 | 109 | 4 | 34 | 192 | 34 | 203 | 2.73e-12 | 64.3 |
| Msa1297370 | AT2G24260.2 | 43.299 | 97 | 44 | 2 | 43 | 131 | 43 | 136 | 9.36e-12 | 62.8 |
| Msa1297370 | AT4G29930.4 | 34.737 | 95 | 60 | 1 | 47 | 141 | 56 | 148 | 1.05e-11 | 61.6 |
| Msa1297370 | AT5G46830.1 | 50.000 | 54 | 27 | 0 | 45 | 98 | 343 | 396 | 1.22e-11 | 63.5 |
| Msa1297370 | AT1G63650.3 | 27.322 | 183 | 122 | 5 | 29 | 202 | 390 | 570 | 1.57e-11 | 63.2 |
| Msa1297370 | AT1G63650.1 | 27.322 | 183 | 122 | 5 | 29 | 202 | 390 | 570 | 1.57e-11 | 63.2 |
| Msa1297370 | AT1G63650.2 | 27.322 | 183 | 122 | 5 | 29 | 202 | 390 | 570 | 1.57e-11 | 63.2 |
| Msa1297370 | AT2G28160.1 | 28.125 | 160 | 80 | 4 | 47 | 192 | 133 | 271 | 1.70e-11 | 62.8 |
| Msa1297370 | AT2G28160.2 | 28.125 | 160 | 80 | 4 | 47 | 192 | 133 | 271 | 1.85e-11 | 62.4 |
| Msa1297370 | AT4G00870.1 | 33.000 | 100 | 65 | 1 | 5 | 102 | 207 | 306 | 2.83e-11 | 62.4 |
| Msa1297370 | AT2G24260.1 | 43.299 | 97 | 44 | 2 | 43 | 131 | 146 | 239 | 2.98e-11 | 62.0 |
| Msa1297370 | AT5G41315.1 | 27.586 | 174 | 111 | 3 | 43 | 202 | 439 | 611 | 4.73e-11 | 62.0 |
| Msa1297370 | AT5G41315.3 | 27.586 | 174 | 111 | 3 | 43 | 202 | 444 | 616 | 5.26e-11 | 61.6 |
| Msa1297370 | AT5G41315.2 | 27.586 | 174 | 111 | 3 | 43 | 202 | 447 | 619 | 5.31e-11 | 61.6 |
Find 45 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTTGGTTCCACTGCTT+TGG | 0.281497 | 8_3:-57589784 | Msa1297370:CDS |
| ATATAATTGCTGAGAGAATA+AGG | 0.332685 | 8_3:-57590614 | Msa1297370:CDS |
| CCTTATTCCAAACCTCAAAA+AGG | 0.354140 | 8_3:-57590553 | Msa1297370:intron |
| CGGGGAAGAATGTGCTGATT+AGG | 0.377824 | 8_3:-57589896 | Msa1297370:CDS |
| GAAGTTAAAGCTAGTTTGTC+GGG | 0.404928 | 8_3:-57589915 | Msa1297370:CDS |
| AATTTCTTCACAACCGTAAC+CGG | 0.405974 | 8_3:+57590035 | None:intergenic |
| AATAGAGAAACTTGGTCTCT+TGG | 0.416449 | 8_3:-57589826 | Msa1297370:CDS |
| AAGGTTGGTACAACCTTCAT+TGG | 0.429134 | 8_3:+57590753 | None:intergenic |
| ATTCTTTGAGTTCACAACTT+TGG | 0.438205 | 8_3:+57590719 | None:intergenic |
| GACAAACTAGCTTTAACTTC+AGG | 0.442233 | 8_3:+57589918 | None:intergenic |
| GTCTGCGGATGTCAATGTTT+CGG | 0.442533 | 8_3:-57590003 | Msa1297370:CDS |
| CAAAAGCAAAAGTGTAGAAC+CGG | 0.446629 | 8_3:-57590054 | Msa1297370:CDS |
| ATGGACAAGGCCTCAGTGTT+GGG | 0.461686 | 8_3:-57590137 | Msa1297370:CDS |
| GTTTCCATTACATGAATTTG+AGG | 0.464190 | 8_3:+57589974 | None:intergenic |
| CTCTCAGCAATTATATGATC+CGG | 0.466944 | 8_3:+57590621 | None:intergenic |
| AAAGTATGTGAAGGAGCTTA+AGG | 0.470002 | 8_3:-57590105 | Msa1297370:CDS |
| CAAAAGTGTAGAACCGGTTA+CGG | 0.471591 | 8_3:-57590048 | Msa1297370:CDS |
| ACTTCCTCAAATTCATGTAA+TGG | 0.472899 | 8_3:-57589978 | Msa1297370:CDS |
| GGCCATAACCATCATTGCTC+AGG | 0.477071 | 8_3:-57589763 | Msa1297370:CDS |
| AAAATGTACCTGAGCAATGA+TGG | 0.489397 | 8_3:+57589755 | None:intergenic |
| GGAACCAAATGAAAAGGAAC+TGG | 0.494621 | 8_3:+57589794 | None:intergenic |
| AAAGTTGTGAACTCAAAGAA+TGG | 0.494937 | 8_3:-57590717 | Msa1297370:CDS |
| TGTGTGATGAGTTGTAGATT+TGG | 0.498172 | 8_3:+57590644 | None:intergenic |
| AGCAGTGGAACCAAATGAAA+AGG | 0.516842 | 8_3:+57589788 | None:intergenic |
| TGAGAAAGATAAGGCAGTGA+TGG | 0.525707 | 8_3:-57589865 | Msa1297370:CDS |
| TAAGGAACAAGTAAAACTGT+TGG | 0.530262 | 8_3:-57590087 | Msa1297370:CDS |
| CTGAAAGAGCTATGAACTGT+TGG | 0.532934 | 8_3:+57590577 | None:intergenic |
| TGAAGTTAAAGCTAGTTTGT+CGG | 0.533689 | 8_3:-57589916 | Msa1297370:CDS |
| GAGAAAGATAAGGCAGTGAT+GGG | 0.538793 | 8_3:-57589864 | Msa1297370:CDS |
| GGAACAAGTAAAACTGTTGG+AGG | 0.550452 | 8_3:-57590084 | Msa1297370:CDS |
| TATAGAGAAATAGAGAAACT+TGG | 0.574558 | 8_3:-57589834 | Msa1297370:CDS |
| TACCTGAGCAATGATGGTTA+TGG | 0.585304 | 8_3:+57589761 | None:intergenic |
| GATGGACAAGGCCTCAGTGT+TGG | 0.588121 | 8_3:-57590138 | Msa1297370:CDS |
| GATCCTCTGTGAGAAAGATA+AGG | 0.589750 | 8_3:-57589874 | Msa1297370:CDS |
| GATGGTTATGGCCAAAGCAG+TGG | 0.589928 | 8_3:+57589773 | None:intergenic |
| CAGGAGAGCAACAAGAAGAA+CGG | 0.634139 | 8_3:-57590675 | Msa1297370:CDS |
| AAGTTAAAGCTAGTTTGTCG+GGG | 0.643559 | 8_3:-57589914 | Msa1297370:CDS |
| GAAATTGTCTGAACTGTCTG+CGG | 0.654800 | 8_3:-57590018 | Msa1297370:CDS |
| TGAAGGTTGTACCAACCTTG+AGG | 0.663007 | 8_3:-57590749 | Msa1297370:CDS |
| CATATGTTTGTAGATGGACA+AGG | 0.664887 | 8_3:-57590150 | Msa1297370:intron |
| AGAAAGATAAGGCAGTGATG+GGG | 0.666003 | 8_3:-57589863 | Msa1297370:CDS |
| ATCTACAACTCATCACACAC+CGG | 0.675276 | 8_3:-57590640 | Msa1297370:CDS |
| CTGCCTTATCTTTCTCACAG+AGG | 0.691029 | 8_3:+57589871 | None:intergenic |
| TGATGCTATAAAGTATGTGA+AGG | 0.702262 | 8_3:-57590114 | Msa1297370:CDS |
| TATAGCATCACCCAACACTG+AGG | 0.742341 | 8_3:+57590127 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATATAATTGCTGAGAGAATA+AGG | - | chr8_3:57589888-57589907 | Msa1297370:CDS | 25.0% |
| !! | TTGAAAAATGAACCTTTTTG+AGG | + | chr8_3:57589964-57589983 | None:intergenic | 25.0% |
| ! | TATAGAGAAATAGAGAAACT+TGG | - | chr8_3:57590668-57590687 | Msa1297370:CDS | 25.0% |
| ! | ATATAATTGCTGAGAGAATA+AGG | - | chr8_3:57589888-57589907 | Msa1297370:CDS | 25.0% |
| !! | TTGAAAAATGAACCTTTTTG+AGG | + | chr8_3:57589964-57589983 | None:intergenic | 25.0% |
| ! | TATAGAGAAATAGAGAAACT+TGG | - | chr8_3:57590668-57590687 | Msa1297370:CDS | 25.0% |
| ! | ATTCTTTGAGTTCACAACTT+TGG | + | chr8_3:57589786-57589805 | None:intergenic | 30.0% |
| AAAGTTGTGAACTCAAAGAA+TGG | - | chr8_3:57589785-57589804 | Msa1297370:CDS | 30.0% | |
| !!! | CTTTTTGAGGTTTGGAATAA+GGG | + | chr8_3:57589951-57589970 | None:intergenic | 30.0% |
| !!! | AAATGAACCTTTTTGAGGTT+TGG | + | chr8_3:57589959-57589978 | None:intergenic | 30.0% |
| !! | TGACTCGAACTATATTTTTG+TGG | - | chr8_3:57589996-57590015 | Msa1297370:CDS | 30.0% |
| !! | GACTCGAACTATATTTTTGT+GGG | - | chr8_3:57589997-57590016 | Msa1297370:CDS | 30.0% |
| ! | TTTTTAGATTGTGCGTCAAT+CGG | - | chr8_3:57590111-57590130 | Msa1297370:CDS | 30.0% |
| ACACATGATTGATTGTGATT+TGG | - | chr8_3:57590235-57590254 | Msa1297370:intron | 30.0% | |
| GATTGATTGCGATTTATTGA+CGG | - | chr8_3:57590295-57590314 | Msa1297370:intron | 30.0% | |
| TGATGCTATAAAGTATGTGA+AGG | - | chr8_3:57590388-57590407 | Msa1297370:intron | 30.0% | |
| TAAGGAACAAGTAAAACTGT+TGG | - | chr8_3:57590415-57590434 | Msa1297370:intron | 30.0% | |
| ACTTCCTCAAATTCATGTAA+TGG | - | chr8_3:57590524-57590543 | Msa1297370:intron | 30.0% | |
| GTTTCCATTACATGAATTTG+AGG | + | chr8_3:57590531-57590550 | None:intergenic | 30.0% | |
| ! | TGAAGTTAAAGCTAGTTTGT+CGG | - | chr8_3:57590586-57590605 | Msa1297370:CDS | 30.0% |
| ! | ATTCTTTGAGTTCACAACTT+TGG | + | chr8_3:57589786-57589805 | None:intergenic | 30.0% |
| AAAGTTGTGAACTCAAAGAA+TGG | - | chr8_3:57589785-57589804 | Msa1297370:CDS | 30.0% | |
| !!! | CTTTTTGAGGTTTGGAATAA+GGG | + | chr8_3:57589951-57589970 | None:intergenic | 30.0% |
| !!! | AAATGAACCTTTTTGAGGTT+TGG | + | chr8_3:57589959-57589978 | None:intergenic | 30.0% |
| !! | TGACTCGAACTATATTTTTG+TGG | - | chr8_3:57589996-57590015 | Msa1297370:CDS | 30.0% |
| !! | GACTCGAACTATATTTTTGT+GGG | - | chr8_3:57589997-57590016 | Msa1297370:CDS | 30.0% |
| ! | TTTTTAGATTGTGCGTCAAT+CGG | - | chr8_3:57590111-57590130 | Msa1297370:CDS | 30.0% |
| ACACATGATTGATTGTGATT+TGG | - | chr8_3:57590235-57590254 | Msa1297370:intron | 30.0% | |
| GATTGATTGCGATTTATTGA+CGG | - | chr8_3:57590295-57590314 | Msa1297370:intron | 30.0% | |
| TGATGCTATAAAGTATGTGA+AGG | - | chr8_3:57590388-57590407 | Msa1297370:intron | 30.0% | |
| TAAGGAACAAGTAAAACTGT+TGG | - | chr8_3:57590415-57590434 | Msa1297370:intron | 30.0% | |
| ACTTCCTCAAATTCATGTAA+TGG | - | chr8_3:57590524-57590543 | Msa1297370:intron | 30.0% | |
| GTTTCCATTACATGAATTTG+AGG | + | chr8_3:57590531-57590550 | None:intergenic | 30.0% | |
| ! | TGAAGTTAAAGCTAGTTTGT+CGG | - | chr8_3:57590586-57590605 | Msa1297370:CDS | 30.0% |
| !!! | AACTTTGGTTTTTGACCTCA+AGG | + | chr8_3:57589771-57589790 | None:intergenic | 35.0% |
| ACCAAGACGTGTAAAAAATC+AGG | - | chr8_3:57589808-57589827 | Msa1297370:CDS | 35.0% | |
| !!! | TCCTGATTTTTTACACGTCT+TGG | + | chr8_3:57589812-57589831 | None:intergenic | 35.0% |
| TGTGTGATGAGTTGTAGATT+TGG | + | chr8_3:57589861-57589880 | None:intergenic | 35.0% | |
| CTCTCAGCAATTATATGATC+CGG | + | chr8_3:57589884-57589903 | None:intergenic | 35.0% | |
| !!! | CCTTTTTGAGGTTTGGAATA+AGG | + | chr8_3:57589952-57589971 | None:intergenic | 35.0% |
| CCTTATTCCAAACCTCAAAA+AGG | - | chr8_3:57589949-57589968 | Msa1297370:CDS | 35.0% | |
| GTACTCCATATGTTTGTAGA+TGG | - | chr8_3:57590346-57590365 | Msa1297370:intron | 35.0% | |
| CTTGTCCATCTACAAACATA+TGG | + | chr8_3:57590354-57590373 | None:intergenic | 35.0% | |
| CATATGTTTGTAGATGGACA+AGG | - | chr8_3:57590352-57590371 | Msa1297370:intron | 35.0% | |
| AAAGTATGTGAAGGAGCTTA+AGG | - | chr8_3:57590397-57590416 | Msa1297370:intron | 35.0% | |
| ! | CAAAAGCAAAAGTGTAGAAC+CGG | - | chr8_3:57590448-57590467 | Msa1297370:intron | 35.0% |
| AATTTCTTCACAACCGTAAC+CGG | + | chr8_3:57590470-57590489 | None:intergenic | 35.0% | |
| !! | GACAAACTAGCTTTAACTTC+AGG | + | chr8_3:57590587-57590606 | None:intergenic | 35.0% |
| ! | GAAGTTAAAGCTAGTTTGTC+GGG | - | chr8_3:57590587-57590606 | Msa1297370:CDS | 35.0% |
| ! | AAGTTAAAGCTAGTTTGTCG+GGG | - | chr8_3:57590588-57590607 | Msa1297370:CDS | 35.0% |
| AATAGAGAAACTTGGTCTCT+TGG | - | chr8_3:57590676-57590695 | Msa1297370:CDS | 35.0% | |
| ! | AATGCCAGTTCCTTTTCATT+TGG | - | chr8_3:57590704-57590723 | Msa1297370:CDS | 35.0% |
| AAAATGTACCTGAGCAATGA+TGG | + | chr8_3:57590750-57590769 | None:intergenic | 35.0% | |
| !!! | AACTTTGGTTTTTGACCTCA+AGG | + | chr8_3:57589771-57589790 | None:intergenic | 35.0% |
| ACCAAGACGTGTAAAAAATC+AGG | - | chr8_3:57589808-57589827 | Msa1297370:CDS | 35.0% | |
| !!! | TCCTGATTTTTTACACGTCT+TGG | + | chr8_3:57589812-57589831 | None:intergenic | 35.0% |
| TGTGTGATGAGTTGTAGATT+TGG | + | chr8_3:57589861-57589880 | None:intergenic | 35.0% | |
| CTCTCAGCAATTATATGATC+CGG | + | chr8_3:57589884-57589903 | None:intergenic | 35.0% | |
| !!! | CCTTTTTGAGGTTTGGAATA+AGG | + | chr8_3:57589952-57589971 | None:intergenic | 35.0% |
| CCTTATTCCAAACCTCAAAA+AGG | - | chr8_3:57589949-57589968 | Msa1297370:CDS | 35.0% | |
| GTACTCCATATGTTTGTAGA+TGG | - | chr8_3:57590346-57590365 | Msa1297370:intron | 35.0% | |
| CTTGTCCATCTACAAACATA+TGG | + | chr8_3:57590354-57590373 | None:intergenic | 35.0% | |
| CATATGTTTGTAGATGGACA+AGG | - | chr8_3:57590352-57590371 | Msa1297370:intron | 35.0% | |
| AAAGTATGTGAAGGAGCTTA+AGG | - | chr8_3:57590397-57590416 | Msa1297370:intron | 35.0% | |
| ! | CAAAAGCAAAAGTGTAGAAC+CGG | - | chr8_3:57590448-57590467 | Msa1297370:intron | 35.0% |
| AATTTCTTCACAACCGTAAC+CGG | + | chr8_3:57590470-57590489 | None:intergenic | 35.0% | |
| !! | GACAAACTAGCTTTAACTTC+AGG | + | chr8_3:57590587-57590606 | None:intergenic | 35.0% |
| ! | GAAGTTAAAGCTAGTTTGTC+GGG | - | chr8_3:57590587-57590606 | Msa1297370:CDS | 35.0% |
| ! | AAGTTAAAGCTAGTTTGTCG+GGG | - | chr8_3:57590588-57590607 | Msa1297370:CDS | 35.0% |
| AATAGAGAAACTTGGTCTCT+TGG | - | chr8_3:57590676-57590695 | Msa1297370:CDS | 35.0% | |
| ! | AATGCCAGTTCCTTTTCATT+TGG | - | chr8_3:57590704-57590723 | Msa1297370:CDS | 35.0% |
| AAAATGTACCTGAGCAATGA+TGG | + | chr8_3:57590750-57590769 | None:intergenic | 35.0% | |
| !! | TTGGTTTTTGACCTCAAGGT+TGG | + | chr8_3:57589767-57589786 | None:intergenic | 40.0% |
| ATCTACAACTCATCACACAC+CGG | - | chr8_3:57589862-57589881 | Msa1297370:CDS | 40.0% | |
| CTGAAAGAGCTATGAACTGT+TGG | + | chr8_3:57589928-57589947 | None:intergenic | 40.0% | |
| GGAACAAGTAAAACTGTTGG+AGG | - | chr8_3:57590418-57590437 | Msa1297370:intron | 40.0% | |
| ! | CAAAAGTGTAGAACCGGTTA+CGG | - | chr8_3:57590454-57590473 | Msa1297370:intron | 40.0% |
| GAAATTGTCTGAACTGTCTG+CGG | - | chr8_3:57590484-57590503 | Msa1297370:intron | 40.0% | |
| GATCCTCTGTGAGAAAGATA+AGG | - | chr8_3:57590628-57590647 | Msa1297370:CDS | 40.0% | |
| TGAGAAAGATAAGGCAGTGA+TGG | - | chr8_3:57590637-57590656 | Msa1297370:CDS | 40.0% | |
| GAGAAAGATAAGGCAGTGAT+GGG | - | chr8_3:57590638-57590657 | Msa1297370:CDS | 40.0% | |
| AGAAAGATAAGGCAGTGATG+GGG | - | chr8_3:57590639-57590658 | Msa1297370:CDS | 40.0% | |
| GGAACCAAATGAAAAGGAAC+TGG | + | chr8_3:57590711-57590730 | None:intergenic | 40.0% | |
| AGCAGTGGAACCAAATGAAA+AGG | + | chr8_3:57590717-57590736 | None:intergenic | 40.0% | |
| ! | TTCATTTGGTTCCACTGCTT+TGG | - | chr8_3:57590718-57590737 | Msa1297370:CDS | 40.0% |
| TACCTGAGCAATGATGGTTA+TGG | + | chr8_3:57590744-57590763 | None:intergenic | 40.0% | |
| !! | TTGGTTTTTGACCTCAAGGT+TGG | + | chr8_3:57589767-57589786 | None:intergenic | 40.0% |
| ATCTACAACTCATCACACAC+CGG | - | chr8_3:57589862-57589881 | Msa1297370:CDS | 40.0% | |
| CTGAAAGAGCTATGAACTGT+TGG | + | chr8_3:57589928-57589947 | None:intergenic | 40.0% | |
| GGAACAAGTAAAACTGTTGG+AGG | - | chr8_3:57590418-57590437 | Msa1297370:intron | 40.0% | |
| ! | CAAAAGTGTAGAACCGGTTA+CGG | - | chr8_3:57590454-57590473 | Msa1297370:intron | 40.0% |
| GAAATTGTCTGAACTGTCTG+CGG | - | chr8_3:57590484-57590503 | Msa1297370:intron | 40.0% | |
| GATCCTCTGTGAGAAAGATA+AGG | - | chr8_3:57590628-57590647 | Msa1297370:CDS | 40.0% | |
| TGAGAAAGATAAGGCAGTGA+TGG | - | chr8_3:57590637-57590656 | Msa1297370:CDS | 40.0% | |
| GAGAAAGATAAGGCAGTGAT+GGG | - | chr8_3:57590638-57590657 | Msa1297370:CDS | 40.0% | |
| AGAAAGATAAGGCAGTGATG+GGG | - | chr8_3:57590639-57590658 | Msa1297370:CDS | 40.0% | |
| GGAACCAAATGAAAAGGAAC+TGG | + | chr8_3:57590711-57590730 | None:intergenic | 40.0% | |
| AGCAGTGGAACCAAATGAAA+AGG | + | chr8_3:57590717-57590736 | None:intergenic | 40.0% | |
| ! | TTCATTTGGTTCCACTGCTT+TGG | - | chr8_3:57590718-57590737 | Msa1297370:CDS | 40.0% |
| TACCTGAGCAATGATGGTTA+TGG | + | chr8_3:57590744-57590763 | None:intergenic | 40.0% | |
| TGAAGGTTGTACCAACCTTG+AGG | - | chr8_3:57589753-57589772 | Msa1297370:CDS | 45.0% | |
| CAGGAGAGCAACAAGAAGAA+CGG | - | chr8_3:57589827-57589846 | Msa1297370:CDS | 45.0% | |
| TATAGCATCACCCAACACTG+AGG | + | chr8_3:57590378-57590397 | None:intergenic | 45.0% | |
| GTCTGCGGATGTCAATGTTT+CGG | - | chr8_3:57590499-57590518 | Msa1297370:intron | 45.0% | |
| CTGCCTTATCTTTCTCACAG+AGG | + | chr8_3:57590634-57590653 | None:intergenic | 45.0% | |
| TGAAGGTTGTACCAACCTTG+AGG | - | chr8_3:57589753-57589772 | Msa1297370:CDS | 45.0% | |
| CAGGAGAGCAACAAGAAGAA+CGG | - | chr8_3:57589827-57589846 | Msa1297370:CDS | 45.0% | |
| TATAGCATCACCCAACACTG+AGG | + | chr8_3:57590378-57590397 | None:intergenic | 45.0% | |
| GTCTGCGGATGTCAATGTTT+CGG | - | chr8_3:57590499-57590518 | Msa1297370:intron | 45.0% | |
| CTGCCTTATCTTTCTCACAG+AGG | + | chr8_3:57590634-57590653 | None:intergenic | 45.0% | |
| ATGGACAAGGCCTCAGTGTT+GGG | - | chr8_3:57590365-57590384 | Msa1297370:intron | 50.0% | |
| !! | CGGGGAAGAATGTGCTGATT+AGG | - | chr8_3:57590606-57590625 | Msa1297370:CDS | 50.0% |
| GATGGTTATGGCCAAAGCAG+TGG | + | chr8_3:57590732-57590751 | None:intergenic | 50.0% | |
| GGCCATAACCATCATTGCTC+AGG | - | chr8_3:57590739-57590758 | Msa1297370:CDS | 50.0% | |
| ATGGACAAGGCCTCAGTGTT+GGG | - | chr8_3:57590365-57590384 | Msa1297370:intron | 50.0% | |
| !! | CGGGGAAGAATGTGCTGATT+AGG | - | chr8_3:57590606-57590625 | Msa1297370:CDS | 50.0% |
| GATGGTTATGGCCAAAGCAG+TGG | + | chr8_3:57590732-57590751 | None:intergenic | 50.0% | |
| GGCCATAACCATCATTGCTC+AGG | - | chr8_3:57590739-57590758 | Msa1297370:CDS | 50.0% | |
| GATGGACAAGGCCTCAGTGT+TGG | - | chr8_3:57590364-57590383 | Msa1297370:intron | 55.0% | |
| GATGGACAAGGCCTCAGTGT+TGG | - | chr8_3:57590364-57590383 | Msa1297370:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 57589752 | 57590772 | 57589752 | ID=Msa1297370;Name=Msa1297370 |
| chr8_3 | mRNA | 57589752 | 57590772 | 57589752 | ID=Msa1297370-mRNA-1;Parent=Msa1297370;Name=Msa1297370-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|2|0|208 |
| chr8_3 | exon | 57590554 | 57590772 | 57590554 | ID=Msa1297370-mRNA-1:exon:16524;Parent=Msa1297370-mRNA-1 |
| chr8_3 | exon | 57589752 | 57590159 | 57589752 | ID=Msa1297370-mRNA-1:exon:16523;Parent=Msa1297370-mRNA-1 |
| chr8_3 | CDS | 57590554 | 57590772 | 57590554 | ID=Msa1297370-mRNA-1:cds;Parent=Msa1297370-mRNA-1 |
| chr8_3 | CDS | 57589752 | 57590159 | 57589752 | ID=Msa1297370-mRNA-1:cds;Parent=Msa1297370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
