Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302370 | PNY17322.1 | 89.498 | 219 | 1 | 1 | 1 | 197 | 1 | 219 | 1.30e-129 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302370 | sp|Q84WG1|NHX3_ARATH | 66.210 | 219 | 52 | 1 | 1 | 197 | 2 | 220 | 4.02e-95 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302370 | A0A2K3PPU9 | 89.498 | 219 | 1 | 1 | 1 | 197 | 1 | 219 | 6.22e-130 | 385 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1302370 | Msa1420950 | 0.803904 | 2.790497e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302370 | MtrunA17_Chr4g0066681 | 89.041 | 219 | 2 | 1 | 1 | 197 | 1 | 219 | 7.67e-132 | 380 |
| Msa1302370 | MtrunA17_Chr1g0191231 | 67.757 | 214 | 47 | 1 | 6 | 197 | 7 | 220 | 2.82e-95 | 287 |
| Msa1302370 | MtrunA17_Chr7g0273581 | 53.441 | 247 | 57 | 2 | 9 | 197 | 4 | 250 | 1.86e-79 | 247 |
| Msa1302370 | MtrunA17_Chr1g0191531 | 59.091 | 198 | 59 | 1 | 22 | 197 | 23 | 220 | 2.80e-73 | 230 |
| Msa1302370 | MtrunA17_Chr3g0100591 | 56.585 | 205 | 66 | 2 | 15 | 197 | 21 | 224 | 1.89e-72 | 228 |
| Msa1302370 | MtrunA17_Chr1g0191541 | 55.024 | 209 | 71 | 2 | 12 | 197 | 12 | 220 | 3.91e-68 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302370 | AT3G06370.2 | 66.210 | 219 | 52 | 1 | 1 | 197 | 2 | 220 | 2.73e-97 | 288 |
| Msa1302370 | AT3G06370.1 | 66.210 | 219 | 52 | 1 | 1 | 197 | 2 | 220 | 4.09e-96 | 288 |
| Msa1302370 | AT3G06370.3 | 66.210 | 219 | 52 | 1 | 1 | 197 | 2 | 220 | 7.95e-96 | 289 |
| Msa1302370 | AT3G06370.4 | 66.210 | 219 | 52 | 1 | 1 | 197 | 2 | 220 | 7.95e-96 | 289 |
| Msa1302370 | AT3G05030.3 | 66.977 | 215 | 49 | 1 | 5 | 197 | 5 | 219 | 2.12e-95 | 285 |
| Msa1302370 | AT5G27150.1 | 67.925 | 212 | 46 | 1 | 6 | 195 | 4 | 215 | 6.79e-95 | 286 |
| Msa1302370 | AT3G05030.1 | 66.977 | 215 | 49 | 1 | 5 | 197 | 5 | 219 | 1.22e-94 | 286 |
| Msa1302370 | AT3G05030.4 | 66.977 | 215 | 49 | 1 | 5 | 197 | 5 | 219 | 1.22e-94 | 286 |
| Msa1302370 | AT3G05030.2 | 66.977 | 215 | 49 | 1 | 5 | 197 | 5 | 219 | 1.22e-94 | 286 |
| Msa1302370 | AT5G55470.1 | 53.521 | 213 | 77 | 1 | 7 | 197 | 5 | 217 | 5.98e-72 | 227 |
| Msa1302370 | AT1G54370.1 | 28.649 | 185 | 104 | 5 | 18 | 175 | 20 | 203 | 5.09e-11 | 61.2 |
Find 39 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGAAAGGTTAATTAGTT+TGG | 0.245140 | 8_3:+64939890 | Msa1302370:five_prime_UTR |
| ACCACTGCTTTACATTTATT+AGG | 0.251026 | 8_3:+64941412 | Msa1302370:CDS |
| TTAATTAGTTTGGATTATAT+TGG | 0.271030 | 8_3:+64939900 | Msa1302370:five_prime_UTR |
| CTTTGTACTTGTATCGTCAT+TGG | 0.336938 | 8_3:+64940050 | Msa1302370:CDS |
| GATATTGGTTCCCTCAAGAT+TGG | 0.362548 | 8_3:+64941044 | Msa1302370:CDS |
| TATCGTCATTGGTCATTTGT+TGG | 0.363963 | 8_3:+64940061 | Msa1302370:CDS |
| TGAGTGACGAAGAGGTAAAA+TGG | 0.372796 | 8_3:-64939858 | None:intergenic |
| ATATATGTGACATTGAGTTT+TGG | 0.400979 | 8_3:+64939924 | Msa1302370:five_prime_UTR |
| AGATTCTGTGTGCACATTGC+AGG | 0.402521 | 8_3:+64941194 | Msa1302370:CDS |
| TATGCATCAGGTTCTTAATC+AGG | 0.411383 | 8_3:+64941276 | Msa1302370:intron |
| GCATGGCAGGGTTTGTGTAC+TGG | 0.415493 | 8_3:+64940208 | Msa1302370:intron |
| CTCAAGATTGGAGATTATCT+AGG | 0.423564 | 8_3:+64941056 | Msa1302370:CDS |
| AGGAAGAAGCTCTCATATAA+TGG | 0.452232 | 8_3:+64940255 | Msa1302370:CDS |
| TTACTATACAGCCTGGTGTT+CGG | 0.476552 | 8_3:+64941310 | Msa1302370:CDS |
| TAGATAATCTCCAATCTTGA+GGG | 0.481077 | 8_3:-64941054 | None:intergenic |
| GGAGGTGTGAATATGGTTGG+AGG | 0.492621 | 8_3:+64939945 | Msa1302370:exon |
| TTTGGAGGTGTGAATATGGT+TGG | 0.504748 | 8_3:+64939942 | Msa1302370:exon |
| CTCAACTAAGTGAAGGAGAA+AGG | 0.508292 | 8_3:+64939877 | Msa1302370:five_prime_UTR |
| CTACGCCTTCTCCGAACACC+AGG | 0.508804 | 8_3:-64941321 | None:intergenic |
| TACAATGAGAAGAGCAGTGA+TGG | 0.526201 | 8_3:-64940108 | None:intergenic |
| CTAGATAATCTCCAATCTTG+AGG | 0.531082 | 8_3:-64941055 | None:intergenic |
| CGTCATTGGTCATTTGTTGG+AGG | 0.545230 | 8_3:+64940064 | Msa1302370:CDS |
| TACAGCCTGGTGTTCGGAGA+AGG | 0.561106 | 8_3:+64941316 | Msa1302370:CDS |
| CACTTAGTTGAGTGACGAAG+AGG | 0.572050 | 8_3:-64939866 | None:intergenic |
| ATTTGTTGGAGGAGAACCGT+TGG | 0.572968 | 8_3:+64940075 | Msa1302370:CDS |
| TGGTTAAGTCAATGTGGGAG+AGG | 0.575379 | 8_3:-64941393 | None:intergenic |
| AACACCAGGCTGTATAGTAA+AGG | 0.575684 | 8_3:-64941307 | None:intergenic |
| TCCTAATAAATGTAAAGCAG+TGG | 0.581310 | 8_3:-64941413 | None:intergenic |
| TGATGGATTCATTAATCCAA+CGG | 0.584319 | 8_3:-64940091 | None:intergenic |
| TCATTCTGCATTATATCACT+AGG | 0.590350 | 8_3:+64940761 | Msa1302370:CDS |
| GGTGTGAATATGGTTGGAGG+AGG | 0.595862 | 8_3:+64939948 | Msa1302370:exon |
| TTCGTCACTCAACTAAGTGA+AGG | 0.606830 | 8_3:+64939870 | Msa1302370:five_prime_UTR |
| AGCAGTGGTTAAGTCAATGT+GGG | 0.615760 | 8_3:-64941398 | None:intergenic |
| AACACCTTTACTATACAGCC+TGG | 0.616257 | 8_3:+64941303 | Msa1302370:CDS |
| AAGCAGTGGTTAAGTCAATG+TGG | 0.629476 | 8_3:-64941399 | None:intergenic |
| GATGACCTCGGATCATGCAT+CGG | 0.634491 | 8_3:+64939998 | Msa1302370:CDS |
| GCATTATAGTCATAAAATTG+CGG | 0.650947 | 8_3:-64940712 | None:intergenic |
| ACTAACGACGATGATGACCT+CGG | 0.666950 | 8_3:+64939986 | Msa1302370:CDS |
| CACAACCGATGCATGATCCG+AGG | 0.676103 | 8_3:-64940003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGTAAAAAAGTTTTATA+TGG | - | chr8_3:64940376-64940395 | None:intergenic | 10.0% |
| !!! | ATATGTAAAAAAGTTTTATA+TGG | - | chr8_3:64940376-64940395 | None:intergenic | 10.0% |
| !!! | TTAATTAGTTTGGATTATAT+TGG | + | chr8_3:64939900-64939919 | Msa1302370:five_prime_UTR | 15.0% |
| !! | ATTGTATGATATATTATTGA+TGG | + | chr8_3:64940186-64940205 | Msa1302370:intron | 15.0% |
| !!! | GTTTAATTATATTTTTGCAA+AGG | - | chr8_3:64940423-64940442 | None:intergenic | 15.0% |
| !! | TATTAATGTAGATATTTGAA+AGG | + | chr8_3:64940445-64940464 | Msa1302370:intron | 15.0% |
| !!! | TTAATTAGTTTGGATTATAT+TGG | + | chr8_3:64939900-64939919 | Msa1302370:five_prime_UTR | 15.0% |
| !! | ATTGTATGATATATTATTGA+TGG | + | chr8_3:64940186-64940205 | Msa1302370:intron | 15.0% |
| !!! | GTTTAATTATATTTTTGCAA+AGG | - | chr8_3:64940423-64940442 | None:intergenic | 15.0% |
| !! | TATTAATGTAGATATTTGAA+AGG | + | chr8_3:64940445-64940464 | Msa1302370:intron | 15.0% |
| !! | TGGATTGTAAATACAAATAA+AGG | - | chr8_3:64940356-64940375 | None:intergenic | 20.0% |
| !!! | TTTATGACTATAATGCTTTT+TGG | + | chr8_3:64940719-64940738 | Msa1302370:CDS | 20.0% |
| !! | CAATTGATAAAATTGATTGA+TGG | - | chr8_3:64940834-64940853 | None:intergenic | 20.0% |
| !!! | ATCTGTTATTTATTTTGTCT+AGG | + | chr8_3:64940996-64941015 | Msa1302370:intron | 20.0% |
| !! | TTCTTCCAAAAATTAGATAT+TGG | + | chr8_3:64941029-64941048 | Msa1302370:CDS | 20.0% |
| !! | ATTATCTGATGATTTAATGT+TGG | + | chr8_3:64941096-64941115 | Msa1302370:intron | 20.0% |
| !! | TGGATTGTAAATACAAATAA+AGG | - | chr8_3:64940356-64940375 | None:intergenic | 20.0% |
| !!! | TTTATGACTATAATGCTTTT+TGG | + | chr8_3:64940719-64940738 | Msa1302370:CDS | 20.0% |
| !! | CAATTGATAAAATTGATTGA+TGG | - | chr8_3:64940834-64940853 | None:intergenic | 20.0% |
| !!! | ATCTGTTATTTATTTTGTCT+AGG | + | chr8_3:64940996-64941015 | Msa1302370:intron | 20.0% |
| !! | TTCTTCCAAAAATTAGATAT+TGG | + | chr8_3:64941029-64941048 | Msa1302370:CDS | 20.0% |
| !! | ATTATCTGATGATTTAATGT+TGG | + | chr8_3:64941096-64941115 | Msa1302370:intron | 20.0% |
| !! | ATATATGTGACATTGAGTTT+TGG | + | chr8_3:64939924-64939943 | Msa1302370:five_prime_UTR | 25.0% |
| !! | ATGATATATTATTGATGGCA+TGG | + | chr8_3:64940191-64940210 | Msa1302370:intron | 25.0% |
| !!! | GTGTTAATTTTGTTTACAAC+TGG | + | chr8_3:64940232-64940251 | Msa1302370:CDS | 25.0% |
| !!! | TTAATTTTGTTTACAACTGG+AGG | + | chr8_3:64940235-64940254 | Msa1302370:CDS | 25.0% |
| ! | TGTTATTCTTTATCCATCTT+AGG | + | chr8_3:64940663-64940682 | Msa1302370:intron | 25.0% |
| ! | GCATTATAGTCATAAAATTG+CGG | - | chr8_3:64940715-64940734 | None:intergenic | 25.0% |
| !!! | TACTTGTTTTGATAAGACTT+TGG | + | chr8_3:64940869-64940888 | Msa1302370:intron | 25.0% |
| !!! | TAATTTTTGGAAGAAGTGTA+TGG | - | chr8_3:64941024-64941043 | None:intergenic | 25.0% |
| ! | ATTATCTATATGTATGCATC+AGG | + | chr8_3:64941264-64941283 | Msa1302370:intron | 25.0% |
| !! | ATATATGTGACATTGAGTTT+TGG | + | chr8_3:64939924-64939943 | Msa1302370:five_prime_UTR | 25.0% |
| !! | ATGATATATTATTGATGGCA+TGG | + | chr8_3:64940191-64940210 | Msa1302370:intron | 25.0% |
| !!! | GTGTTAATTTTGTTTACAAC+TGG | + | chr8_3:64940232-64940251 | Msa1302370:CDS | 25.0% |
| !!! | TTAATTTTGTTTACAACTGG+AGG | + | chr8_3:64940235-64940254 | Msa1302370:CDS | 25.0% |
| ! | TGTTATTCTTTATCCATCTT+AGG | + | chr8_3:64940663-64940682 | Msa1302370:intron | 25.0% |
| ! | GCATTATAGTCATAAAATTG+CGG | - | chr8_3:64940715-64940734 | None:intergenic | 25.0% |
| !!! | TACTTGTTTTGATAAGACTT+TGG | + | chr8_3:64940869-64940888 | Msa1302370:intron | 25.0% |
| !!! | TAATTTTTGGAAGAAGTGTA+TGG | - | chr8_3:64941024-64941043 | None:intergenic | 25.0% |
| ! | ATTATCTATATGTATGCATC+AGG | + | chr8_3:64941264-64941283 | Msa1302370:intron | 25.0% |
| AGGAGAAAGGTTAATTAGTT+TGG | + | chr8_3:64939890-64939909 | Msa1302370:five_prime_UTR | 30.0% | |
| !! | TGATGGATTCATTAATCCAA+CGG | - | chr8_3:64940094-64940113 | None:intergenic | 30.0% |
| AACATAACAAAGTGACATAC+TGG | + | chr8_3:64940481-64940500 | Msa1302370:intron | 30.0% | |
| !! | ATAATGCTTTTTGGTGCAAT+TGG | + | chr8_3:64940728-64940747 | Msa1302370:CDS | 30.0% |
| TCATTCTGCATTATATCACT+AGG | + | chr8_3:64940761-64940780 | Msa1302370:CDS | 30.0% | |
| ! | ATTGATGGTATAGAAAGTAG+AGG | - | chr8_3:64940819-64940838 | None:intergenic | 30.0% |
| TAAGACTTTGGATCAAAATG+TGG | + | chr8_3:64940881-64940900 | Msa1302370:intron | 30.0% | |
| TTATCACACACAAAATGTGT+TGG | - | chr8_3:64940946-64940965 | None:intergenic | 30.0% | |
| ! | GGGAACCAATATCTAATTTT+TGG | - | chr8_3:64941037-64941056 | None:intergenic | 30.0% |
| TAGATAATCTCCAATCTTGA+GGG | - | chr8_3:64941057-64941076 | None:intergenic | 30.0% | |
| AAGGTAAGTGTTCATATTTG+TGG | - | chr8_3:64941128-64941147 | None:intergenic | 30.0% | |
| ACCACTGCTTTACATTTATT+AGG | + | chr8_3:64941412-64941431 | Msa1302370:CDS | 30.0% | |
| TCCTAATAAATGTAAAGCAG+TGG | - | chr8_3:64941416-64941435 | None:intergenic | 30.0% | |
| AGGAGAAAGGTTAATTAGTT+TGG | + | chr8_3:64939890-64939909 | Msa1302370:five_prime_UTR | 30.0% | |
| !! | TGATGGATTCATTAATCCAA+CGG | - | chr8_3:64940094-64940113 | None:intergenic | 30.0% |
| AACATAACAAAGTGACATAC+TGG | + | chr8_3:64940481-64940500 | Msa1302370:intron | 30.0% | |
| !! | ATAATGCTTTTTGGTGCAAT+TGG | + | chr8_3:64940728-64940747 | Msa1302370:CDS | 30.0% |
| TCATTCTGCATTATATCACT+AGG | + | chr8_3:64940761-64940780 | Msa1302370:CDS | 30.0% | |
| ! | ATTGATGGTATAGAAAGTAG+AGG | - | chr8_3:64940819-64940838 | None:intergenic | 30.0% |
| TAAGACTTTGGATCAAAATG+TGG | + | chr8_3:64940881-64940900 | Msa1302370:intron | 30.0% | |
| TTATCACACACAAAATGTGT+TGG | - | chr8_3:64940946-64940965 | None:intergenic | 30.0% | |
| ! | GGGAACCAATATCTAATTTT+TGG | - | chr8_3:64941037-64941056 | None:intergenic | 30.0% |
| TAGATAATCTCCAATCTTGA+GGG | - | chr8_3:64941057-64941076 | None:intergenic | 30.0% | |
| AAGGTAAGTGTTCATATTTG+TGG | - | chr8_3:64941128-64941147 | None:intergenic | 30.0% | |
| ACCACTGCTTTACATTTATT+AGG | + | chr8_3:64941412-64941431 | Msa1302370:CDS | 30.0% | |
| TCCTAATAAATGTAAAGCAG+TGG | - | chr8_3:64941416-64941435 | None:intergenic | 30.0% | |
| !! | TATGTGACATTGAGTTTTGG+AGG | + | chr8_3:64939927-64939946 | Msa1302370:five_prime_UTR | 35.0% |
| CTTTGTACTTGTATCGTCAT+TGG | + | chr8_3:64940050-64940069 | Msa1302370:CDS | 35.0% | |
| TATCGTCATTGGTCATTTGT+TGG | + | chr8_3:64940061-64940080 | Msa1302370:CDS | 35.0% | |
| ! | TATATTATTGATGGCATGGC+AGG | + | chr8_3:64940195-64940214 | Msa1302370:intron | 35.0% |
| ! | ATATTATTGATGGCATGGCA+GGG | + | chr8_3:64940196-64940215 | Msa1302370:intron | 35.0% |
| AGGAAGAAGCTCTCATATAA+TGG | + | chr8_3:64940255-64940274 | Msa1302370:CDS | 35.0% | |
| CTTTATCCATCTTAGGTTTC+AGG | + | chr8_3:64940670-64940689 | Msa1302370:intron | 35.0% | |
| !! | CACACAAAATGTGTTGGTTA+GGG | - | chr8_3:64940940-64940959 | None:intergenic | 35.0% |
| !! | ACACACAAAATGTGTTGGTT+AGG | - | chr8_3:64940941-64940960 | None:intergenic | 35.0% |
| CTAGATAATCTCCAATCTTG+AGG | - | chr8_3:64941058-64941077 | None:intergenic | 35.0% | |
| CTCAAGATTGGAGATTATCT+AGG | + | chr8_3:64941056-64941075 | Msa1302370:CDS | 35.0% | |
| GCATTCAGTAGAAGAAGATA+AGG | - | chr8_3:64941147-64941166 | None:intergenic | 35.0% | |
| TATGCATCAGGTTCTTAATC+AGG | + | chr8_3:64941276-64941295 | Msa1302370:intron | 35.0% | |
| !! | TATGTGACATTGAGTTTTGG+AGG | + | chr8_3:64939927-64939946 | Msa1302370:five_prime_UTR | 35.0% |
| CTTTGTACTTGTATCGTCAT+TGG | + | chr8_3:64940050-64940069 | Msa1302370:CDS | 35.0% | |
| TATCGTCATTGGTCATTTGT+TGG | + | chr8_3:64940061-64940080 | Msa1302370:CDS | 35.0% | |
| ! | TATATTATTGATGGCATGGC+AGG | + | chr8_3:64940195-64940214 | Msa1302370:intron | 35.0% |
| ! | ATATTATTGATGGCATGGCA+GGG | + | chr8_3:64940196-64940215 | Msa1302370:intron | 35.0% |
| AGGAAGAAGCTCTCATATAA+TGG | + | chr8_3:64940255-64940274 | Msa1302370:CDS | 35.0% | |
| CTTTATCCATCTTAGGTTTC+AGG | + | chr8_3:64940670-64940689 | Msa1302370:intron | 35.0% | |
| !! | CACACAAAATGTGTTGGTTA+GGG | - | chr8_3:64940940-64940959 | None:intergenic | 35.0% |
| !! | ACACACAAAATGTGTTGGTT+AGG | - | chr8_3:64940941-64940960 | None:intergenic | 35.0% |
| CTAGATAATCTCCAATCTTG+AGG | - | chr8_3:64941058-64941077 | None:intergenic | 35.0% | |
| CTCAAGATTGGAGATTATCT+AGG | + | chr8_3:64941056-64941075 | Msa1302370:CDS | 35.0% | |
| GCATTCAGTAGAAGAAGATA+AGG | - | chr8_3:64941147-64941166 | None:intergenic | 35.0% | |
| TATGCATCAGGTTCTTAATC+AGG | + | chr8_3:64941276-64941295 | Msa1302370:intron | 35.0% | |
| TGAGTGACGAAGAGGTAAAA+TGG | - | chr8_3:64939861-64939880 | None:intergenic | 40.0% | |
| TTCGTCACTCAACTAAGTGA+AGG | + | chr8_3:64939870-64939889 | Msa1302370:five_prime_UTR | 40.0% | |
| CTCAACTAAGTGAAGGAGAA+AGG | + | chr8_3:64939877-64939896 | Msa1302370:five_prime_UTR | 40.0% | |
| !!! | GAGTTTTGGAGGTGTGAATA+TGG | + | chr8_3:64939938-64939957 | Msa1302370:exon | 40.0% |
| ! | TTTGGAGGTGTGAATATGGT+TGG | + | chr8_3:64939942-64939961 | Msa1302370:exon | 40.0% |
| TACAATGAGAAGAGCAGTGA+TGG | - | chr8_3:64940111-64940130 | None:intergenic | 40.0% | |
| !! | CTGCATTGAAAATGATGGGT+GGG | - | chr8_3:64940315-64940334 | None:intergenic | 40.0% |
| ! | CACCCATCATTTTCAATGCA+GGG | + | chr8_3:64940314-64940333 | Msa1302370:intron | 40.0% |
| GACCCTGCATTGAAAATGAT+GGG | - | chr8_3:64940319-64940338 | None:intergenic | 40.0% | |
| AGACCCTGCATTGAAAATGA+TGG | - | chr8_3:64940320-64940339 | None:intergenic | 40.0% | |
| TCTTGACCTGAAACCTAAGA+TGG | - | chr8_3:64940679-64940698 | None:intergenic | 40.0% | |
| !! | GATATTGGTTCCCTCAAGAT+TGG | + | chr8_3:64941044-64941063 | Msa1302370:CDS | 40.0% |
| CTTCTACTGAATGCAGCAAT+TGG | + | chr8_3:64941153-64941172 | Msa1302370:intron | 40.0% | |
| AACACCTTTACTATACAGCC+TGG | + | chr8_3:64941303-64941322 | Msa1302370:CDS | 40.0% | |
| AACACCAGGCTGTATAGTAA+AGG | - | chr8_3:64941310-64941329 | None:intergenic | 40.0% | |
| TTACTATACAGCCTGGTGTT+CGG | + | chr8_3:64941310-64941329 | Msa1302370:CDS | 40.0% | |
| AGCAGTGGTTAAGTCAATGT+GGG | - | chr8_3:64941401-64941420 | None:intergenic | 40.0% | |
| AAGCAGTGGTTAAGTCAATG+TGG | - | chr8_3:64941402-64941421 | None:intergenic | 40.0% | |
| TGAGTGACGAAGAGGTAAAA+TGG | - | chr8_3:64939861-64939880 | None:intergenic | 40.0% | |
| TTCGTCACTCAACTAAGTGA+AGG | + | chr8_3:64939870-64939889 | Msa1302370:five_prime_UTR | 40.0% | |
| CTCAACTAAGTGAAGGAGAA+AGG | + | chr8_3:64939877-64939896 | Msa1302370:five_prime_UTR | 40.0% | |
| !!! | GAGTTTTGGAGGTGTGAATA+TGG | + | chr8_3:64939938-64939957 | Msa1302370:exon | 40.0% |
| ! | TTTGGAGGTGTGAATATGGT+TGG | + | chr8_3:64939942-64939961 | Msa1302370:exon | 40.0% |
| TACAATGAGAAGAGCAGTGA+TGG | - | chr8_3:64940111-64940130 | None:intergenic | 40.0% | |
| !! | CTGCATTGAAAATGATGGGT+GGG | - | chr8_3:64940315-64940334 | None:intergenic | 40.0% |
| ! | CACCCATCATTTTCAATGCA+GGG | + | chr8_3:64940314-64940333 | Msa1302370:intron | 40.0% |
| GACCCTGCATTGAAAATGAT+GGG | - | chr8_3:64940319-64940338 | None:intergenic | 40.0% | |
| AGACCCTGCATTGAAAATGA+TGG | - | chr8_3:64940320-64940339 | None:intergenic | 40.0% | |
| TCTTGACCTGAAACCTAAGA+TGG | - | chr8_3:64940679-64940698 | None:intergenic | 40.0% | |
| !! | GATATTGGTTCCCTCAAGAT+TGG | + | chr8_3:64941044-64941063 | Msa1302370:CDS | 40.0% |
| CTTCTACTGAATGCAGCAAT+TGG | + | chr8_3:64941153-64941172 | Msa1302370:intron | 40.0% | |
| AACACCTTTACTATACAGCC+TGG | + | chr8_3:64941303-64941322 | Msa1302370:CDS | 40.0% | |
| AACACCAGGCTGTATAGTAA+AGG | - | chr8_3:64941310-64941329 | None:intergenic | 40.0% | |
| TTACTATACAGCCTGGTGTT+CGG | + | chr8_3:64941310-64941329 | Msa1302370:CDS | 40.0% | |
| AGCAGTGGTTAAGTCAATGT+GGG | - | chr8_3:64941401-64941420 | None:intergenic | 40.0% | |
| AAGCAGTGGTTAAGTCAATG+TGG | - | chr8_3:64941402-64941421 | None:intergenic | 40.0% | |
| CACTTAGTTGAGTGACGAAG+AGG | - | chr8_3:64939869-64939888 | None:intergenic | 45.0% | |
| ACTAACGACGATGATGACCT+CGG | + | chr8_3:64939986-64940005 | Msa1302370:CDS | 45.0% | |
| ! | CGTCATTGGTCATTTGTTGG+AGG | + | chr8_3:64940064-64940083 | Msa1302370:CDS | 45.0% |
| ! | ATTTGTTGGAGGAGAACCGT+TGG | + | chr8_3:64940075-64940094 | Msa1302370:CDS | 45.0% |
| !! | TGAAAATGATGGGTGGGAGA+AGG | - | chr8_3:64940309-64940328 | None:intergenic | 45.0% |
| ! | CCTGCATTGAAAATGATGGG+TGG | - | chr8_3:64940316-64940335 | None:intergenic | 45.0% |
| ! | CCACCCATCATTTTCAATGC+AGG | + | chr8_3:64940313-64940332 | Msa1302370:intron | 45.0% |
| AGATTCTGTGTGCACATTGC+AGG | + | chr8_3:64941194-64941213 | Msa1302370:CDS | 45.0% | |
| TGGTTAAGTCAATGTGGGAG+AGG | - | chr8_3:64941396-64941415 | None:intergenic | 45.0% | |
| CACTTAGTTGAGTGACGAAG+AGG | - | chr8_3:64939869-64939888 | None:intergenic | 45.0% | |
| ACTAACGACGATGATGACCT+CGG | + | chr8_3:64939986-64940005 | Msa1302370:CDS | 45.0% | |
| ! | CGTCATTGGTCATTTGTTGG+AGG | + | chr8_3:64940064-64940083 | Msa1302370:CDS | 45.0% |
| ! | ATTTGTTGGAGGAGAACCGT+TGG | + | chr8_3:64940075-64940094 | Msa1302370:CDS | 45.0% |
| !! | TGAAAATGATGGGTGGGAGA+AGG | - | chr8_3:64940309-64940328 | None:intergenic | 45.0% |
| ! | CCTGCATTGAAAATGATGGG+TGG | - | chr8_3:64940316-64940335 | None:intergenic | 45.0% |
| ! | CCACCCATCATTTTCAATGC+AGG | + | chr8_3:64940313-64940332 | Msa1302370:intron | 45.0% |
| AGATTCTGTGTGCACATTGC+AGG | + | chr8_3:64941194-64941213 | Msa1302370:CDS | 45.0% | |
| TGGTTAAGTCAATGTGGGAG+AGG | - | chr8_3:64941396-64941415 | None:intergenic | 45.0% | |
| ! | GGAGGTGTGAATATGGTTGG+AGG | + | chr8_3:64939945-64939964 | Msa1302370:exon | 50.0% |
| GGTGTGAATATGGTTGGAGG+AGG | + | chr8_3:64939948-64939967 | Msa1302370:exon | 50.0% | |
| GATGACCTCGGATCATGCAT+CGG | + | chr8_3:64939998-64940017 | Msa1302370:CDS | 50.0% | |
| ! | GGAGGTGTGAATATGGTTGG+AGG | + | chr8_3:64939945-64939964 | Msa1302370:exon | 50.0% |
| GGTGTGAATATGGTTGGAGG+AGG | + | chr8_3:64939948-64939967 | Msa1302370:exon | 50.0% | |
| GATGACCTCGGATCATGCAT+CGG | + | chr8_3:64939998-64940017 | Msa1302370:CDS | 50.0% | |
| CACAACCGATGCATGATCCG+AGG | - | chr8_3:64940006-64940025 | None:intergenic | 55.0% | |
| GCATGGCAGGGTTTGTGTAC+TGG | + | chr8_3:64940208-64940227 | Msa1302370:intron | 55.0% | |
| TACAGCCTGGTGTTCGGAGA+AGG | + | chr8_3:64941316-64941335 | Msa1302370:CDS | 55.0% | |
| CACAACCGATGCATGATCCG+AGG | - | chr8_3:64940006-64940025 | None:intergenic | 55.0% | |
| GCATGGCAGGGTTTGTGTAC+TGG | + | chr8_3:64940208-64940227 | Msa1302370:intron | 55.0% | |
| TACAGCCTGGTGTTCGGAGA+AGG | + | chr8_3:64941316-64941335 | Msa1302370:CDS | 55.0% | |
| CGCGCTCACTCGTCACACAT+AGG | + | chr8_3:64940551-64940570 | Msa1302370:intron | 60.0% | |
| CTACGCCTTCTCCGAACACC+AGG | - | chr8_3:64941324-64941343 | None:intergenic | 60.0% | |
| CGCGCTCACTCGTCACACAT+AGG | + | chr8_3:64940551-64940570 | Msa1302370:intron | 60.0% | |
| CTACGCCTTCTCCGAACACC+AGG | - | chr8_3:64941324-64941343 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 64939827 | 64941447 | 64939827 | ID=Msa1302370;Name=Msa1302370 |
| chr8_3 | mRNA | 64939827 | 64941447 | 64939827 | ID=Msa1302370-mRNA-1;Parent=Msa1302370;Name=Msa1302370-mRNA-1;_AED=0.11;_eAED=0.11;_QI=130|0.8|0.66|1|0.6|0.5|6|0|197 |
| chr8_3 | exon | 64939827 | 64940127 | 64939827 | ID=Msa1302370-mRNA-1:exon:19643;Parent=Msa1302370-mRNA-1 |
| chr8_3 | exon | 64940217 | 64940276 | 64940217 | ID=Msa1302370-mRNA-1:exon:19644;Parent=Msa1302370-mRNA-1 |
| chr8_3 | exon | 64940692 | 64940782 | 64940692 | ID=Msa1302370-mRNA-1:exon:19645;Parent=Msa1302370-mRNA-1 |
| chr8_3 | exon | 64941018 | 64941077 | 64941018 | ID=Msa1302370-mRNA-1:exon:19646;Parent=Msa1302370-mRNA-1 |
| chr8_3 | exon | 64941169 | 64941215 | 64941169 | ID=Msa1302370-mRNA-1:exon:19647;Parent=Msa1302370-mRNA-1 |
| chr8_3 | exon | 64941286 | 64941447 | 64941286 | ID=Msa1302370-mRNA-1:exon:19648;Parent=Msa1302370-mRNA-1 |
| chr8_3 | five_prime_UTR | 64939827 | 64939956 | 64939827 | ID=Msa1302370-mRNA-1:five_prime_utr;Parent=Msa1302370-mRNA-1 |
| chr8_3 | CDS | 64939957 | 64940127 | 64939957 | ID=Msa1302370-mRNA-1:cds;Parent=Msa1302370-mRNA-1 |
| chr8_3 | CDS | 64940217 | 64940276 | 64940217 | ID=Msa1302370-mRNA-1:cds;Parent=Msa1302370-mRNA-1 |
| chr8_3 | CDS | 64940692 | 64940782 | 64940692 | ID=Msa1302370-mRNA-1:cds;Parent=Msa1302370-mRNA-1 |
| chr8_3 | CDS | 64941018 | 64941077 | 64941018 | ID=Msa1302370-mRNA-1:cds;Parent=Msa1302370-mRNA-1 |
| chr8_3 | CDS | 64941169 | 64941215 | 64941169 | ID=Msa1302370-mRNA-1:cds;Parent=Msa1302370-mRNA-1 |
| chr8_3 | CDS | 64941286 | 64941447 | 64941286 | ID=Msa1302370-mRNA-1:cds;Parent=Msa1302370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
