AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1308510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308510 MtrunA17_Chr8g0335211 98.565 209 3 0 41 249 12 220 8.34e-155 429
Msa1308510 MtrunA17_Chr4g0033841 40.449 89 53 0 124 212 108 196 4.84e-14 69.3
Msa1308510 MtrunA17_Chr7g0214751 30.201 149 71 5 116 232 90 237 2.24e-12 64.7
Msa1308510 MtrunA17_Chr4g0052911 33.871 124 70 2 120 231 115 238 3.40e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1308510 AT3G60370.1 65.975 241 65 4 15 249 13 242 1.76e-106 308
Msa1308510 AT3G60370.2 65.975 241 65 4 15 249 42 271 4.87e-106 308
Msa1308510 AT2G43560.2 43.820 89 50 0 124 212 46 134 9.93e-16 73.2
Msa1308510 AT2G43560.1 43.820 89 50 0 124 212 102 190 1.31e-15 73.9
Msa1308510 AT4G19830.1 29.932 147 70 4 124 237 83 229 2.73e-13 67.8
Msa1308510 AT5G13410.1 31.126 151 71 5 114 232 104 253 1.60e-11 63.2

Find 53 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTTCTCTAATAAAATT+TGG 0.135782 8_4:-4820635 None:intergenic
TGGTTCTTCTTTCACAGTTT+TGG 0.207260 8_4:-4822051 None:intergenic
GAAACTTGCGCTTTCTGTTT+TGG 0.240114 8_4:+4820484 Msa1308510:CDS
TATTGACAGCACTTATTTAC+AGG 0.261599 8_4:+4821251 Msa1308510:CDS
AATTATATAACGCGTGATTC+GGG 0.262660 8_4:+4820835 Msa1308510:CDS
TACTTTCTCAGGATGTAATA+TGG 0.288296 8_4:-4820453 None:intergenic
CTTGTTACCCATGCGAATTT+TGG 0.288794 8_4:-4821283 None:intergenic
TACCTTCTCTAATAAAATTT+GGG 0.314007 8_4:-4820634 None:intergenic
ATAATTATTCCTCCTGATCT+TGG 0.323150 8_4:+4821476 Msa1308510:CDS
TAATTATATAACGCGTGATT+CGG 0.333744 8_4:+4820834 Msa1308510:CDS
AACTACTTTAGAACCTGATT+TGG 0.344434 8_4:+4820223 None:intergenic
CTTCAGCACAAATATTAGTT+AGG 0.348119 8_4:+4822122 Msa1308510:three_prime_UTR
TTCCTCCTTAATACTTTCTC+AGG 0.354488 8_4:-4820464 None:intergenic
TCACGCGTTATATAATTATC+TGG 0.372515 8_4:-4820829 None:intergenic
TACATCCTGAGAAAGTATTA+AGG 0.373534 8_4:+4820459 Msa1308510:CDS
CACTCTTACATGGAATCCTT+TGG 0.373861 8_4:-4820339 None:intergenic
CTTTATCAGAATACCAAATC+AGG 0.374037 8_4:-4820236 None:intergenic
ATAAAATTTGGGAAGTCATC+TGG 0.374287 8_4:-4820623 None:intergenic
GGTAACAAGGCATTGGTTCC+AGG 0.384493 8_4:+4821297 Msa1308510:CDS
CACTTATTTACAGGGTTCTC+CGG 0.422942 8_4:+4821260 Msa1308510:CDS
AAAACCTGCTGACCATCCTT+TGG 0.437003 8_4:-4820898 None:intergenic
TAAATTATGATATTACTTTG+AGG 0.444154 8_4:+4822148 Msa1308510:three_prime_UTR
CAGGTCACATTTCACTATGT+TGG 0.449348 8_4:+4821207 Msa1308510:intron
AACGTGTCTTACAACAAAAC+AGG 0.454819 8_4:+4820576 Msa1308510:CDS
TTTGCATGAGAAGATAAAGT+TGG 0.475317 8_4:-4820524 None:intergenic
TGTATTTATGGATAGAGTGC+AGG 0.475495 8_4:+4820424 Msa1308510:intron
GTAAATAAGTGCTGTCAATA+CGG 0.482227 8_4:-4821248 None:intergenic
TATGTTGGCTATAATGAATC+CGG 0.489665 8_4:+4821222 Msa1308510:CDS
TCCTCCTGATCTTGGACCCC+CGG 0.496637 8_4:+4821484 Msa1308510:CDS
ACTTTCTGATGTAGGATTCG+AGG 0.517255 8_4:+4821415 Msa1308510:intron
CAAAATTCGCATGGGTAACA+AGG 0.517528 8_4:+4821284 Msa1308510:CDS
AACATCAGAGTAAAATCCTA+TGG 0.519964 8_4:-4822071 None:intergenic
TTGTCCAAAGGATGGTCAGC+AGG 0.523009 8_4:+4820894 Msa1308510:CDS
GCCATTTCGATCATCGAGAA+AGG 0.532169 8_4:+4822206 Msa1308510:intron
TCGCATGGGTAACAAGGCAT+TGG 0.532556 8_4:+4821290 Msa1308510:CDS
AGTGCTGTCAATACGGCGGC+CGG 0.534449 8_4:-4821241 None:intergenic
AAATTCCTTTGTACTGTACA+AGG 0.540843 8_4:+4820279 Msa1308510:CDS
CTGAACCAACTTCAAAATCT+CGG 0.546315 8_4:-4820867 None:intergenic
TTCTCCGGCCAAAATTCGCA+TGG 0.552997 8_4:+4821275 Msa1308510:CDS
GGAATTAGAGACATGAGAGC+AGG 0.554241 8_4:+4821440 Msa1308510:CDS
ATTAGAGACATGAGAGCAGG+TGG 0.575545 8_4:+4821443 Msa1308510:CDS
CTTTGTACTGTACAAGGACA+AGG 0.579709 8_4:+4820285 Msa1308510:CDS
ATTGACAGCACTTATTTACA+GGG 0.583530 8_4:+4821252 Msa1308510:CDS
AACTGTGAAAGAAGAACCAT+AGG 0.596337 8_4:+4822055 Msa1308510:CDS
GGACAAGGACAATCAACTCA+TGG 0.598798 8_4:+4820300 Msa1308510:CDS
TGGTTCAGGTGATTGTCCAA+AGG 0.612509 8_4:+4820882 Msa1308510:CDS
ATTATATAACGCGTGATTCG+GGG 0.614564 8_4:+4820836 Msa1308510:CDS
TCAGGTGATTGTCCAAAGGA+TGG 0.615901 8_4:+4820886 Msa1308510:CDS
CTTGTCCTTGTACAGTACAA+AGG 0.628806 8_4:-4820284 None:intergenic
TCTGATGTAGGATTCGAGGA+AGG 0.631567 8_4:+4821419 Msa1308510:intron
TCTCCGGCCAAAATTCGCAT+GGG 0.643150 8_4:+4821276 Msa1308510:CDS
ATCCTGAGAAAGTATTAAGG+AGG 0.647507 8_4:+4820462 Msa1308510:CDS
AATAAGTGCTGTCAATACGG+CGG 0.736335 8_4:-4821245 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTATCTTAATTGTT+TGG + chr8_4:4820959-4820978 Msa1308510:intron 10.0%
!!! AATTTTTATCTTAATTGTTT+GGG + chr8_4:4820960-4820979 Msa1308510:intron 10.0%
!!! TAATTTTTATCTTAATTGTT+TGG + chr8_4:4820959-4820978 Msa1308510:intron 10.0%
!!! AATTTTTATCTTAATTGTTT+GGG + chr8_4:4820960-4820979 Msa1308510:intron 10.0%
!!! ATTTTTATCTTAATTGTTTG+GGG + chr8_4:4820961-4820980 Msa1308510:intron 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr8_4:4821629-4821648 None:intergenic 15.0%
!! TAAATTATGATATTACTTTG+AGG + chr8_4:4822148-4822167 Msa1308510:three_prime_UTR 15.0%
!!! ATTTTTATCTTAATTGTTTG+GGG + chr8_4:4820961-4820980 Msa1308510:intron 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr8_4:4821629-4821648 None:intergenic 15.0%
!! TAAATTATGATATTACTTTG+AGG + chr8_4:4822148-4822167 Msa1308510:three_prime_UTR 15.0%
!!! GCATTTTTTGTTTGTATTTA+TGG + chr8_4:4820412-4820431 Msa1308510:intron 20.0%
!!! ATTATACGGATTCATATTTT+TGG - chr8_4:4820552-4820571 None:intergenic 20.0%
!! TACCTTCTCTAATAAAATTT+GGG - chr8_4:4820637-4820656 None:intergenic 20.0%
!! TTACCTTCTCTAATAAAATT+TGG - chr8_4:4820638-4820657 None:intergenic 20.0%
!! AATCATGTATGAAAAAACAA+TGG - chr8_4:4820664-4820683 None:intergenic 20.0%
!!! GGTTTATTAATATACTTTTC+AGG + chr8_4:4820784-4820803 Msa1308510:intron 20.0%
!!! TTTTTATCTTAATTGTTTGG+GGG + chr8_4:4820962-4820981 Msa1308510:intron 20.0%
!! AAGAAGTTAACACAAATATT+AGG + chr8_4:4820985-4821004 Msa1308510:intron 20.0%
!!! TCACATAATTTTCTACATTA+CGG + chr8_4:4821887-4821906 Msa1308510:intron 20.0%
!!! GCATTTTTTGTTTGTATTTA+TGG + chr8_4:4820412-4820431 Msa1308510:intron 20.0%
!!! ATTATACGGATTCATATTTT+TGG - chr8_4:4820552-4820571 None:intergenic 20.0%
!! TACCTTCTCTAATAAAATTT+GGG - chr8_4:4820637-4820656 None:intergenic 20.0%
!! TTACCTTCTCTAATAAAATT+TGG - chr8_4:4820638-4820657 None:intergenic 20.0%
!! AATCATGTATGAAAAAACAA+TGG - chr8_4:4820664-4820683 None:intergenic 20.0%
!!! GGTTTATTAATATACTTTTC+AGG + chr8_4:4820784-4820803 Msa1308510:intron 20.0%
!!! TTTTTATCTTAATTGTTTGG+GGG + chr8_4:4820962-4820981 Msa1308510:intron 20.0%
!! AAGAAGTTAACACAAATATT+AGG + chr8_4:4820985-4821004 Msa1308510:intron 20.0%
!!! TCACATAATTTTCTACATTA+CGG + chr8_4:4821887-4821906 Msa1308510:intron 20.0%
!!! TGATAAAGCATTTCCTTTTT+TGG + chr8_4:4820251-4820270 Msa1308510:CDS 25.0%
! ATGCACTAATAAAAAACCAA+AGG + chr8_4:4820323-4820342 Msa1308510:CDS 25.0%
! AAAATAATGTCACTCTTACA+TGG - chr8_4:4820352-4820371 None:intergenic 25.0%
!! AGTGACATTATTTTCTTGAA+TGG + chr8_4:4820358-4820377 Msa1308510:intron 25.0%
!! AAGACACGTTTTTCATTATA+CGG - chr8_4:4820566-4820585 None:intergenic 25.0%
!! TTCCCAAATTTTATTAGAGA+AGG + chr8_4:4820632-4820651 Msa1308510:CDS 25.0%
! TAATTATATAACGCGTGATT+CGG + chr8_4:4820834-4820853 Msa1308510:CDS 25.0%
! CAAAGAAAGAAATAGTTGAT+TGG - chr8_4:4820939-4820958 None:intergenic 25.0%
! TTAGCAGTAATTATCAAACA+TGG - chr8_4:4821562-4821581 None:intergenic 25.0%
! AAAACATTGCCTATACATAA+GGG - chr8_4:4821793-4821812 None:intergenic 25.0%
! TAAAACATTGCCTATACATA+AGG - chr8_4:4821794-4821813 None:intergenic 25.0%
!! ACATGCATAGTTTAAAATTG+TGG - chr8_4:4821932-4821951 None:intergenic 25.0%
!! AATTTTAAACTATGCATGTG+TGG + chr8_4:4821933-4821952 Msa1308510:intron 25.0%
!! ATTTTAAACTATGCATGTGT+GGG + chr8_4:4821934-4821953 Msa1308510:intron 25.0%
!!! TCAAGTATTCTTTGTTGTTT+TGG + chr8_4:4822177-4822196 Msa1308510:intron 25.0%
!!! TGATAAAGCATTTCCTTTTT+TGG + chr8_4:4820251-4820270 Msa1308510:CDS 25.0%
! ATGCACTAATAAAAAACCAA+AGG + chr8_4:4820323-4820342 Msa1308510:CDS 25.0%
! AAAATAATGTCACTCTTACA+TGG - chr8_4:4820352-4820371 None:intergenic 25.0%
!! AGTGACATTATTTTCTTGAA+TGG + chr8_4:4820358-4820377 Msa1308510:intron 25.0%
!! AAGACACGTTTTTCATTATA+CGG - chr8_4:4820566-4820585 None:intergenic 25.0%
!! TTCCCAAATTTTATTAGAGA+AGG + chr8_4:4820632-4820651 Msa1308510:CDS 25.0%
! TAATTATATAACGCGTGATT+CGG + chr8_4:4820834-4820853 Msa1308510:CDS 25.0%
! CAAAGAAAGAAATAGTTGAT+TGG - chr8_4:4820939-4820958 None:intergenic 25.0%
! TTAGCAGTAATTATCAAACA+TGG - chr8_4:4821562-4821581 None:intergenic 25.0%
! AAAACATTGCCTATACATAA+GGG - chr8_4:4821793-4821812 None:intergenic 25.0%
! TAAAACATTGCCTATACATA+AGG - chr8_4:4821794-4821813 None:intergenic 25.0%
!! ACATGCATAGTTTAAAATTG+TGG - chr8_4:4821932-4821951 None:intergenic 25.0%
!! AATTTTAAACTATGCATGTG+TGG + chr8_4:4821933-4821952 Msa1308510:intron 25.0%
!! ATTTTAAACTATGCATGTGT+GGG + chr8_4:4821934-4821953 Msa1308510:intron 25.0%
!!! TCAAGTATTCTTTGTTGTTT+TGG + chr8_4:4822177-4822196 Msa1308510:intron 25.0%
CTTTATCAGAATACCAAATC+AGG - chr8_4:4820239-4820258 None:intergenic 30.0%
! AGGAATTTTACTGCCAAAAA+AGG - chr8_4:4820267-4820286 None:intergenic 30.0%
AAATTCCTTTGTACTGTACA+AGG + chr8_4:4820279-4820298 Msa1308510:CDS 30.0%
TTTCATCTAATATCCTTCTG+AGG + chr8_4:4820388-4820407 Msa1308510:intron 30.0%
TTCATCTAATATCCTTCTGA+GGG + chr8_4:4820389-4820408 Msa1308510:intron 30.0%
TACTTTCTCAGGATGTAATA+TGG - chr8_4:4820456-4820475 None:intergenic 30.0%
!! TACATCCTGAGAAAGTATTA+AGG + chr8_4:4820459-4820478 Msa1308510:CDS 30.0%
TTTGCATGAGAAGATAAAGT+TGG - chr8_4:4820527-4820546 None:intergenic 30.0%
ATAAAATTTGGGAAGTCATC+TGG - chr8_4:4820626-4820645 None:intergenic 30.0%
! AGTTGTTTGTGTCAAACTTT+TGG + chr8_4:4820749-4820768 Msa1308510:intron 30.0%
! AACTTTTGGATATGATGTTC+TGG + chr8_4:4820763-4820782 Msa1308510:intron 30.0%
TCACGCGTTATATAATTATC+TGG - chr8_4:4820832-4820851 None:intergenic 30.0%
AATTATATAACGCGTGATTC+GGG + chr8_4:4820835-4820854 Msa1308510:CDS 30.0%
!!! ATATACCGAGATTTTGAAGT+TGG + chr8_4:4820862-4820881 Msa1308510:CDS 30.0%
!! CTTGATGAGTTTGTTGAAAT+GGG + chr8_4:4821081-4821100 Msa1308510:intron 30.0%
!! TTGATGAGTTTGTTGAAATG+GGG + chr8_4:4821082-4821101 Msa1308510:intron 30.0%
TTTGTTGAAATGGGGAAAAT+TGG + chr8_4:4821090-4821109 Msa1308510:intron 30.0%
! TATGTTGGCTATAATGAATC+CGG + chr8_4:4821222-4821241 Msa1308510:CDS 30.0%
! GTAAATAAGTGCTGTCAATA+CGG - chr8_4:4821251-4821270 None:intergenic 30.0%
TATTGACAGCACTTATTTAC+AGG + chr8_4:4821251-4821270 Msa1308510:CDS 30.0%
ATTGACAGCACTTATTTACA+GGG + chr8_4:4821252-4821271 Msa1308510:CDS 30.0%
!!! CTATTCTTCCTTTTTTTACC+TGG - chr8_4:4821318-4821337 None:intergenic 30.0%
ATAATTATTCCTCCTGATCT+TGG + chr8_4:4821476-4821495 Msa1308510:CDS 30.0%
AAAGAGAATAAGAGATGTAC+CGG - chr8_4:4821506-4821525 None:intergenic 30.0%
GTTGCTAAAAACTTATGCTA+AGG + chr8_4:4821739-4821758 Msa1308510:intron 30.0%
GTTTATCTTCCCTTATGTAT+AGG + chr8_4:4821781-4821800 Msa1308510:intron 30.0%
TTTGAGCTGAAAAATGTTGA+AGG - chr8_4:4821995-4822014 None:intergenic 30.0%
AACATCAGAGTAAAATCCTA+TGG - chr8_4:4822074-4822093 None:intergenic 30.0%
CTTCAGCACAAATATTAGTT+AGG + chr8_4:4822122-4822141 Msa1308510:three_prime_UTR 30.0%
CTTTATCAGAATACCAAATC+AGG - chr8_4:4820239-4820258 None:intergenic 30.0%
! AGGAATTTTACTGCCAAAAA+AGG - chr8_4:4820267-4820286 None:intergenic 30.0%
AAATTCCTTTGTACTGTACA+AGG + chr8_4:4820279-4820298 Msa1308510:CDS 30.0%
TTTCATCTAATATCCTTCTG+AGG + chr8_4:4820388-4820407 Msa1308510:intron 30.0%
TTCATCTAATATCCTTCTGA+GGG + chr8_4:4820389-4820408 Msa1308510:intron 30.0%
TACTTTCTCAGGATGTAATA+TGG - chr8_4:4820456-4820475 None:intergenic 30.0%
!! TACATCCTGAGAAAGTATTA+AGG + chr8_4:4820459-4820478 Msa1308510:CDS 30.0%
TTTGCATGAGAAGATAAAGT+TGG - chr8_4:4820527-4820546 None:intergenic 30.0%
ATAAAATTTGGGAAGTCATC+TGG - chr8_4:4820626-4820645 None:intergenic 30.0%
! AGTTGTTTGTGTCAAACTTT+TGG + chr8_4:4820749-4820768 Msa1308510:intron 30.0%
! AACTTTTGGATATGATGTTC+TGG + chr8_4:4820763-4820782 Msa1308510:intron 30.0%
TCACGCGTTATATAATTATC+TGG - chr8_4:4820832-4820851 None:intergenic 30.0%
AATTATATAACGCGTGATTC+GGG + chr8_4:4820835-4820854 Msa1308510:CDS 30.0%
!!! ATATACCGAGATTTTGAAGT+TGG + chr8_4:4820862-4820881 Msa1308510:CDS 30.0%
!! CTTGATGAGTTTGTTGAAAT+GGG + chr8_4:4821081-4821100 Msa1308510:intron 30.0%
!! TTGATGAGTTTGTTGAAATG+GGG + chr8_4:4821082-4821101 Msa1308510:intron 30.0%
TTTGTTGAAATGGGGAAAAT+TGG + chr8_4:4821090-4821109 Msa1308510:intron 30.0%
! TATGTTGGCTATAATGAATC+CGG + chr8_4:4821222-4821241 Msa1308510:CDS 30.0%
! GTAAATAAGTGCTGTCAATA+CGG - chr8_4:4821251-4821270 None:intergenic 30.0%
TATTGACAGCACTTATTTAC+AGG + chr8_4:4821251-4821270 Msa1308510:CDS 30.0%
ATTGACAGCACTTATTTACA+GGG + chr8_4:4821252-4821271 Msa1308510:CDS 30.0%
!!! CTATTCTTCCTTTTTTTACC+TGG - chr8_4:4821318-4821337 None:intergenic 30.0%
ATAATTATTCCTCCTGATCT+TGG + chr8_4:4821476-4821495 Msa1308510:CDS 30.0%
AAAGAGAATAAGAGATGTAC+CGG - chr8_4:4821506-4821525 None:intergenic 30.0%
GTTGCTAAAAACTTATGCTA+AGG + chr8_4:4821739-4821758 Msa1308510:intron 30.0%
GTTTATCTTCCCTTATGTAT+AGG + chr8_4:4821781-4821800 Msa1308510:intron 30.0%
TTTGAGCTGAAAAATGTTGA+AGG - chr8_4:4821995-4822014 None:intergenic 30.0%
AACATCAGAGTAAAATCCTA+TGG - chr8_4:4822074-4822093 None:intergenic 30.0%
CTTCAGCACAAATATTAGTT+AGG + chr8_4:4822122-4822141 Msa1308510:three_prime_UTR 30.0%
TCATCTAATATCCTTCTGAG+GGG + chr8_4:4820390-4820409 Msa1308510:intron 35.0%
TGTATTTATGGATAGAGTGC+AGG + chr8_4:4820424-4820443 Msa1308510:intron 35.0%
!! ATCCTGAGAAAGTATTAAGG+AGG + chr8_4:4820462-4820481 Msa1308510:CDS 35.0%
TTCCTCCTTAATACTTTCTC+AGG - chr8_4:4820467-4820486 None:intergenic 35.0%
AACGTGTCTTACAACAAAAC+AGG + chr8_4:4820576-4820595 Msa1308510:CDS 35.0%
ATTATATAACGCGTGATTCG+GGG + chr8_4:4820836-4820855 Msa1308510:CDS 35.0%
CTGAACCAACTTCAAAATCT+CGG - chr8_4:4820870-4820889 None:intergenic 35.0%
GAGAACTGAAATTGTCTCTA+TGG + chr8_4:4821024-4821043 Msa1308510:intron 35.0%
! TATGGAGTAGTATTTTGCAG+TGG + chr8_4:4821042-4821061 Msa1308510:intron 35.0%
! CATCAAGGTATTTAGAGTAG+TGG - chr8_4:4821068-4821087 None:intergenic 35.0%
CCATTTCAACAAACTCATCA+AGG - chr8_4:4821083-4821102 None:intergenic 35.0%
!! CCTTGATGAGTTTGTTGAAA+TGG + chr8_4:4821080-4821099 Msa1308510:intron 35.0%
!! CATTGGTTCCAGGTAAAAAA+AGG + chr8_4:4821307-4821326 Msa1308510:intron 35.0%
TGACAAAAAGCTTTCGTCAT+TGG + chr8_4:4821371-4821390 Msa1308510:intron 35.0%
AAGAGAATAAGAGATGTACC+GGG - chr8_4:4821505-4821524 None:intergenic 35.0%
GTAATCACATATGTCGATGT+CGG + chr8_4:4821656-4821675 Msa1308510:intron 35.0%
! ACTCTAATCAAAGGCATGTT+CGG - chr8_4:4821702-4821721 None:intergenic 35.0%
! CTTGATGTTTTGTCTTTTGC+AGG + chr8_4:4821964-4821983 Msa1308510:intron 35.0%
! ATGTTTTGTCTTTTGCAGGT+AGG + chr8_4:4821968-4821987 Msa1308510:intron 35.0%
! TGGTTCTTCTTTCACAGTTT+TGG - chr8_4:4822054-4822073 None:intergenic 35.0%
AACTGTGAAAGAAGAACCAT+AGG + chr8_4:4822055-4822074 Msa1308510:CDS 35.0%
TCATCTAATATCCTTCTGAG+GGG + chr8_4:4820390-4820409 Msa1308510:intron 35.0%
TGTATTTATGGATAGAGTGC+AGG + chr8_4:4820424-4820443 Msa1308510:intron 35.0%
!! ATCCTGAGAAAGTATTAAGG+AGG + chr8_4:4820462-4820481 Msa1308510:CDS 35.0%
TTCCTCCTTAATACTTTCTC+AGG - chr8_4:4820467-4820486 None:intergenic 35.0%
AACGTGTCTTACAACAAAAC+AGG + chr8_4:4820576-4820595 Msa1308510:CDS 35.0%
ATTATATAACGCGTGATTCG+GGG + chr8_4:4820836-4820855 Msa1308510:CDS 35.0%
CTGAACCAACTTCAAAATCT+CGG - chr8_4:4820870-4820889 None:intergenic 35.0%
GAGAACTGAAATTGTCTCTA+TGG + chr8_4:4821024-4821043 Msa1308510:intron 35.0%
! TATGGAGTAGTATTTTGCAG+TGG + chr8_4:4821042-4821061 Msa1308510:intron 35.0%
! CATCAAGGTATTTAGAGTAG+TGG - chr8_4:4821068-4821087 None:intergenic 35.0%
CCATTTCAACAAACTCATCA+AGG - chr8_4:4821083-4821102 None:intergenic 35.0%
!! CCTTGATGAGTTTGTTGAAA+TGG + chr8_4:4821080-4821099 Msa1308510:intron 35.0%
!! CATTGGTTCCAGGTAAAAAA+AGG + chr8_4:4821307-4821326 Msa1308510:intron 35.0%
TGACAAAAAGCTTTCGTCAT+TGG + chr8_4:4821371-4821390 Msa1308510:intron 35.0%
AAGAGAATAAGAGATGTACC+GGG - chr8_4:4821505-4821524 None:intergenic 35.0%
GTAATCACATATGTCGATGT+CGG + chr8_4:4821656-4821675 Msa1308510:intron 35.0%
! ACTCTAATCAAAGGCATGTT+CGG - chr8_4:4821702-4821721 None:intergenic 35.0%
! CTTGATGTTTTGTCTTTTGC+AGG + chr8_4:4821964-4821983 Msa1308510:intron 35.0%
! ATGTTTTGTCTTTTGCAGGT+AGG + chr8_4:4821968-4821987 Msa1308510:intron 35.0%
! TGGTTCTTCTTTCACAGTTT+TGG - chr8_4:4822054-4822073 None:intergenic 35.0%
AACTGTGAAAGAAGAACCAT+AGG + chr8_4:4822055-4822074 Msa1308510:CDS 35.0%
CTTGTCCTTGTACAGTACAA+AGG - chr8_4:4820287-4820306 None:intergenic 40.0%
CTTTGTACTGTACAAGGACA+AGG + chr8_4:4820285-4820304 Msa1308510:CDS 40.0%
CACTCTTACATGGAATCCTT+TGG - chr8_4:4820342-4820361 None:intergenic 40.0%
AACAAAAAATGCCCCTCAGA+AGG - chr8_4:4820404-4820423 None:intergenic 40.0%
! GAAACTTGCGCTTTCTGTTT+TGG + chr8_4:4820484-4820503 Msa1308510:CDS 40.0%
CAAACAACTGTGACACTTAC+AGG - chr8_4:4820738-4820757 None:intergenic 40.0%
!!! CGAGATTTTGAAGTTGGTTC+AGG + chr8_4:4820868-4820887 Msa1308510:CDS 40.0%
TACATTATACCATGCCTTGC+AGG + chr8_4:4821188-4821207 Msa1308510:intron 40.0%
ATAGTGAAATGTGACCTGCA+AGG - chr8_4:4821205-4821224 None:intergenic 40.0%
CAGGTCACATTTCACTATGT+TGG + chr8_4:4821207-4821226 Msa1308510:intron 40.0%
! AATAAGTGCTGTCAATACGG+CGG - chr8_4:4821248-4821267 None:intergenic 40.0%
CACTTATTTACAGGGTTCTC+CGG + chr8_4:4821260-4821279 Msa1308510:CDS 40.0%
! CTTGTTACCCATGCGAATTT+TGG - chr8_4:4821286-4821305 None:intergenic 40.0%
CAAAATTCGCATGGGTAACA+AGG + chr8_4:4821284-4821303 Msa1308510:CDS 40.0%
TTCTCCACACTTTCTGATGT+AGG + chr8_4:4821407-4821426 Msa1308510:intron 40.0%
GAATCCTACATCAGAAAGTG+TGG - chr8_4:4821414-4821433 None:intergenic 40.0%
ACTTTCTGATGTAGGATTCG+AGG + chr8_4:4821415-4821434 Msa1308510:intron 40.0%
AGAGAATAAGAGATGTACCG+GGG - chr8_4:4821504-4821523 None:intergenic 40.0%
CATGCCTTTGATTAGAGTGT+CGG + chr8_4:4821704-4821723 Msa1308510:intron 40.0%
TTGCTTTCGTGATGTAGTTG+TGG + chr8_4:4821861-4821880 Msa1308510:intron 40.0%
TCTACATTACGGCCACAATT+AGG + chr8_4:4821898-4821917 Msa1308510:intron 40.0%
CTACATTACGGCCACAATTA+GGG + chr8_4:4821899-4821918 Msa1308510:intron 40.0%
TCCTTTCTCGATGATCGAAA+TGG - chr8_4:4822210-4822229 None:intergenic 40.0%
CTTGTCCTTGTACAGTACAA+AGG - chr8_4:4820287-4820306 None:intergenic 40.0%
CTTTGTACTGTACAAGGACA+AGG + chr8_4:4820285-4820304 Msa1308510:CDS 40.0%
CACTCTTACATGGAATCCTT+TGG - chr8_4:4820342-4820361 None:intergenic 40.0%
AACAAAAAATGCCCCTCAGA+AGG - chr8_4:4820404-4820423 None:intergenic 40.0%
! GAAACTTGCGCTTTCTGTTT+TGG + chr8_4:4820484-4820503 Msa1308510:CDS 40.0%
CAAACAACTGTGACACTTAC+AGG - chr8_4:4820738-4820757 None:intergenic 40.0%
!!! CGAGATTTTGAAGTTGGTTC+AGG + chr8_4:4820868-4820887 Msa1308510:CDS 40.0%
TACATTATACCATGCCTTGC+AGG + chr8_4:4821188-4821207 Msa1308510:intron 40.0%
ATAGTGAAATGTGACCTGCA+AGG - chr8_4:4821205-4821224 None:intergenic 40.0%
CAGGTCACATTTCACTATGT+TGG + chr8_4:4821207-4821226 Msa1308510:intron 40.0%
! AATAAGTGCTGTCAATACGG+CGG - chr8_4:4821248-4821267 None:intergenic 40.0%
CACTTATTTACAGGGTTCTC+CGG + chr8_4:4821260-4821279 Msa1308510:CDS 40.0%
! CTTGTTACCCATGCGAATTT+TGG - chr8_4:4821286-4821305 None:intergenic 40.0%
CAAAATTCGCATGGGTAACA+AGG + chr8_4:4821284-4821303 Msa1308510:CDS 40.0%
TTCTCCACACTTTCTGATGT+AGG + chr8_4:4821407-4821426 Msa1308510:intron 40.0%
GAATCCTACATCAGAAAGTG+TGG - chr8_4:4821414-4821433 None:intergenic 40.0%
ACTTTCTGATGTAGGATTCG+AGG + chr8_4:4821415-4821434 Msa1308510:intron 40.0%
AGAGAATAAGAGATGTACCG+GGG - chr8_4:4821504-4821523 None:intergenic 40.0%
CATGCCTTTGATTAGAGTGT+CGG + chr8_4:4821704-4821723 Msa1308510:intron 40.0%
TTGCTTTCGTGATGTAGTTG+TGG + chr8_4:4821861-4821880 Msa1308510:intron 40.0%
TCTACATTACGGCCACAATT+AGG + chr8_4:4821898-4821917 Msa1308510:intron 40.0%
CTACATTACGGCCACAATTA+GGG + chr8_4:4821899-4821918 Msa1308510:intron 40.0%
TCCTTTCTCGATGATCGAAA+TGG - chr8_4:4822210-4822229 None:intergenic 40.0%
GGACAAGGACAATCAACTCA+TGG + chr8_4:4820300-4820319 Msa1308510:CDS 45.0%
TGGTTCAGGTGATTGTCCAA+AGG + chr8_4:4820882-4820901 Msa1308510:CDS 45.0%
TCAGGTGATTGTCCAAAGGA+TGG + chr8_4:4820886-4820905 Msa1308510:CDS 45.0%
AAAACCTGCTGACCATCCTT+TGG - chr8_4:4820901-4820920 None:intergenic 45.0%
!! TTACCCATGCGAATTTTGGC+CGG - chr8_4:4821282-4821301 None:intergenic 45.0%
TCTGATGTAGGATTCGAGGA+AGG + chr8_4:4821419-4821438 Msa1308510:intron 45.0%
GGAATTAGAGACATGAGAGC+AGG + chr8_4:4821440-4821459 Msa1308510:CDS 45.0%
ATTAGAGACATGAGAGCAGG+TGG + chr8_4:4821443-4821462 Msa1308510:CDS 45.0%
GAGAATAAGAGATGTACCGG+GGG - chr8_4:4821503-4821522 None:intergenic 45.0%
CTCGCAGGTACATTAGTGAA+TGG - chr8_4:4821534-4821553 None:intergenic 45.0%
TCAAACATGGAAAGACTCGC+AGG - chr8_4:4821549-4821568 None:intergenic 45.0%
GGTGTCAACGTGTACATGTT+TGG - chr8_4:4821608-4821627 None:intergenic 45.0%
ATCGCCGACACTCTAATCAA+AGG - chr8_4:4821711-4821730 None:intergenic 45.0%
GCCATTTCGATCATCGAGAA+AGG + chr8_4:4822206-4822225 Msa1308510:intron 45.0%
GGACAAGGACAATCAACTCA+TGG + chr8_4:4820300-4820319 Msa1308510:CDS 45.0%
TGGTTCAGGTGATTGTCCAA+AGG + chr8_4:4820882-4820901 Msa1308510:CDS 45.0%
TCAGGTGATTGTCCAAAGGA+TGG + chr8_4:4820886-4820905 Msa1308510:CDS 45.0%
AAAACCTGCTGACCATCCTT+TGG - chr8_4:4820901-4820920 None:intergenic 45.0%
!! TTACCCATGCGAATTTTGGC+CGG - chr8_4:4821282-4821301 None:intergenic 45.0%
TCTGATGTAGGATTCGAGGA+AGG + chr8_4:4821419-4821438 Msa1308510:intron 45.0%
GGAATTAGAGACATGAGAGC+AGG + chr8_4:4821440-4821459 Msa1308510:CDS 45.0%
ATTAGAGACATGAGAGCAGG+TGG + chr8_4:4821443-4821462 Msa1308510:CDS 45.0%
GAGAATAAGAGATGTACCGG+GGG - chr8_4:4821503-4821522 None:intergenic 45.0%
CTCGCAGGTACATTAGTGAA+TGG - chr8_4:4821534-4821553 None:intergenic 45.0%
TCAAACATGGAAAGACTCGC+AGG - chr8_4:4821549-4821568 None:intergenic 45.0%
GGTGTCAACGTGTACATGTT+TGG - chr8_4:4821608-4821627 None:intergenic 45.0%
ATCGCCGACACTCTAATCAA+AGG - chr8_4:4821711-4821730 None:intergenic 45.0%
GCCATTTCGATCATCGAGAA+AGG + chr8_4:4822206-4822225 Msa1308510:intron 45.0%
CTTACAGGAGAGACATCGCA+GGG - chr8_4:4820723-4820742 None:intergenic 50.0%
ACTTACAGGAGAGACATCGC+AGG - chr8_4:4820724-4820743 None:intergenic 50.0%
TTGTCCAAAGGATGGTCAGC+AGG + chr8_4:4820894-4820913 Msa1308510:CDS 50.0%
GAAATGTGACCTGCAAGGCA+TGG - chr8_4:4821200-4821219 None:intergenic 50.0%
TTCTCCGGCCAAAATTCGCA+TGG + chr8_4:4821275-4821294 Msa1308510:CDS 50.0%
TCTCCGGCCAAAATTCGCAT+GGG + chr8_4:4821276-4821295 Msa1308510:CDS 50.0%
TCGCATGGGTAACAAGGCAT+TGG + chr8_4:4821290-4821309 Msa1308510:CDS 50.0%
!! GGTAACAAGGCATTGGTTCC+AGG + chr8_4:4821297-4821316 Msa1308510:CDS 50.0%
CTTACAGGAGAGACATCGCA+GGG - chr8_4:4820723-4820742 None:intergenic 50.0%
ACTTACAGGAGAGACATCGC+AGG - chr8_4:4820724-4820743 None:intergenic 50.0%
TTGTCCAAAGGATGGTCAGC+AGG + chr8_4:4820894-4820913 Msa1308510:CDS 50.0%
GAAATGTGACCTGCAAGGCA+TGG - chr8_4:4821200-4821219 None:intergenic 50.0%
TTCTCCGGCCAAAATTCGCA+TGG + chr8_4:4821275-4821294 Msa1308510:CDS 50.0%
TCTCCGGCCAAAATTCGCAT+GGG + chr8_4:4821276-4821295 Msa1308510:CDS 50.0%
TCGCATGGGTAACAAGGCAT+TGG + chr8_4:4821290-4821309 Msa1308510:CDS 50.0%
!! GGTAACAAGGCATTGGTTCC+AGG + chr8_4:4821297-4821316 Msa1308510:CDS 50.0%
GTGGCTCACAGCCCTAATTG+TGG - chr8_4:4821913-4821932 None:intergenic 55.0%
GTGGCTCACAGCCCTAATTG+TGG - chr8_4:4821913-4821932 None:intergenic 55.0%
AGTGCTGTCAATACGGCGGC+CGG - chr8_4:4821244-4821263 None:intergenic 60.0%
TCCTCCTGATCTTGGACCCC+CGG + chr8_4:4821484-4821503 Msa1308510:CDS 60.0%
TGTACCGGGGGTCCAAGATC+AGG - chr8_4:4821491-4821510 None:intergenic 60.0%
AGTGCTGTCAATACGGCGGC+CGG - chr8_4:4821244-4821263 None:intergenic 60.0%
TCCTCCTGATCTTGGACCCC+CGG + chr8_4:4821484-4821503 Msa1308510:CDS 60.0%
TGTACCGGGGGTCCAAGATC+AGG - chr8_4:4821491-4821510 None:intergenic 60.0%
ACCGGGGGTCCAAGATCAGG+AGG - chr8_4:4821488-4821507 None:intergenic 65.0%
ACCGGGGGTCCAAGATCAGG+AGG - chr8_4:4821488-4821507 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 4820234 4822289 4820234 ID=Msa1308510;Name=Msa1308510
chr8_4 mRNA 4820234 4822289 4820234 ID=Msa1308510-mRNA-1;Parent=Msa1308510;Name=Msa1308510-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|1|0.85|1|0.83|0.71|7|149|249
chr8_4 exon 4820234 4820352 4820234 ID=Msa1308510-mRNA-1:exon:1458;Parent=Msa1308510-mRNA-1
chr8_4 exon 4820439 4820653 4820439 ID=Msa1308510-mRNA-1:exon:1459;Parent=Msa1308510-mRNA-1
chr8_4 exon 4820806 4820915 4820806 ID=Msa1308510-mRNA-1:exon:1460;Parent=Msa1308510-mRNA-1
chr8_4 exon 4821210 4821318 4821210 ID=Msa1308510-mRNA-1:exon:1461;Parent=Msa1308510-mRNA-1
chr8_4 exon 4821429 4821505 4821429 ID=Msa1308510-mRNA-1:exon:1462;Parent=Msa1308510-mRNA-1
chr8_4 exon 4821986 4822180 4821986 ID=Msa1308510-mRNA-1:exon:1463;Parent=Msa1308510-mRNA-1
chr8_4 exon 4822216 4822289 4822216 ID=Msa1308510-mRNA-1:exon:1464;Parent=Msa1308510-mRNA-1
chr8_4 CDS 4820234 4820352 4820234 ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1
chr8_4 CDS 4820439 4820653 4820439 ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1
chr8_4 CDS 4820806 4820915 4820806 ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1
chr8_4 CDS 4821210 4821318 4821210 ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1
chr8_4 CDS 4821429 4821505 4821429 ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1
chr8_4 CDS 4821986 4822105 4821986 ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1
chr8_4 three_prime_UTR 4822106 4822180 4822106 ID=Msa1308510-mRNA-1:three_prime_utr;Parent=Msa1308510-mRNA-1
chr8_4 three_prime_UTR 4822216 4822289 4822216 ID=Msa1308510-mRNA-1:three_prime_utr;Parent=Msa1308510-mRNA-1
Gene Sequence

>Msa1308510

AACCTGATTTGGTATTCTGATAAAGCATTTCCTTTTTTGGCAGTAAAATTCCTTTGTACTGTACAAGGACAAGGACAATCAACTCATGGATGCACTAATAAAAAACCAAAGGATTCCATAGTGCAGGATAACTCCATATTACATCCTGAGAAAGTATTAAGGAGGAAACTTGCGCTTTCTGTTTTGGTCTCAACTTGTGTTTTTCCAACTTTATCTTCTCATGCAAAGACCAAAAATATGAATCCGTATAATGAAAAACGTGTCTTACAACAAAACAGGAATATACAAAAACAAAACAATGCACCAGATGACTTCCCAAATTTTATTAGAGAAGGTTTTGAAGTCAAAGTAATAGCACCAGATAATTATATAACGCGTGATTCGGGGCTCATATACCGAGATTTTGAAGTTGGTTCAGGTGATTGTCCAAAGGATGGTCAGCAGGTCACATTTCACTATGTTGGCTATAATGAATCCGGCCGCCGTATTGACAGCACTTATTTACAGGGTTCTCCGGCCAAAATTCGCATGGGTAACAAGGCATTGGTTCCAGGATTCGAGGAAGGAATTAGAGACATGAGAGCAGGTGGAAAGAGAAGAATAATTATTCCTCCTGATCTTGGACCCCCGGTAGGACCTTCAACATTTTTCAGCTCAAAACAATTTGAAGTTTTTGATGTTGAATTATTAAGCATCCAAAACTGTGAAAGAAGAACCATAGGATTTTACTCTGATGTTGTATGCAATTGA

Protein sequence

>Msa1308510

NLIWYSDKAFPFLAVKFLCTVQGQGQSTHGCTNKKPKDSIVQDNSILHPEKVLRRKLALSVLVSTCVFPTLSSHAKTKNMNPYNEKRVLQQNRNIQKQNNAPDDFPNFIREGFEVKVIAPDNYITRDSGLIYRDFEVGSGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGSPAKIRMGNKALVPGFEEGIRDMRAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIGFYSDVVCN*