Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1308510 | XP_024627994.1 | 95.868 | 242 | 7 | 1 | 8 | 249 | 15 | 253 | 3.64e-171 | 482 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1308510 | sp|Q0WRJ7|FK202_ARATH | 65.975 | 241 | 65 | 4 | 15 | 249 | 13 | 242 | 1.73e-105 | 308 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1308510 | A0A072TLV5 | 97.458 | 236 | 6 | 0 | 14 | 249 | 235 | 470 | 7.85e-170 | 486 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1299160 | Msa1308510 | 0.822883 | 1.866180e-53 | -8.615850e-47 |
Msa1210640 | Msa1308510 | 0.827564 | 1.459396e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1308510 | MtrunA17_Chr8g0335211 | 98.565 | 209 | 3 | 0 | 41 | 249 | 12 | 220 | 8.34e-155 | 429 |
Msa1308510 | MtrunA17_Chr4g0033841 | 40.449 | 89 | 53 | 0 | 124 | 212 | 108 | 196 | 4.84e-14 | 69.3 |
Msa1308510 | MtrunA17_Chr7g0214751 | 30.201 | 149 | 71 | 5 | 116 | 232 | 90 | 237 | 2.24e-12 | 64.7 |
Msa1308510 | MtrunA17_Chr4g0052911 | 33.871 | 124 | 70 | 2 | 120 | 231 | 115 | 238 | 3.40e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1308510 | AT3G60370.1 | 65.975 | 241 | 65 | 4 | 15 | 249 | 13 | 242 | 1.76e-106 | 308 |
Msa1308510 | AT3G60370.2 | 65.975 | 241 | 65 | 4 | 15 | 249 | 42 | 271 | 4.87e-106 | 308 |
Msa1308510 | AT2G43560.2 | 43.820 | 89 | 50 | 0 | 124 | 212 | 46 | 134 | 9.93e-16 | 73.2 |
Msa1308510 | AT2G43560.1 | 43.820 | 89 | 50 | 0 | 124 | 212 | 102 | 190 | 1.31e-15 | 73.9 |
Msa1308510 | AT4G19830.1 | 29.932 | 147 | 70 | 4 | 124 | 237 | 83 | 229 | 2.73e-13 | 67.8 |
Msa1308510 | AT5G13410.1 | 31.126 | 151 | 71 | 5 | 114 | 232 | 104 | 253 | 1.60e-11 | 63.2 |
Find 53 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACCTTCTCTAATAAAATT+TGG | 0.135782 | 8_4:-4820635 | None:intergenic |
TGGTTCTTCTTTCACAGTTT+TGG | 0.207260 | 8_4:-4822051 | None:intergenic |
GAAACTTGCGCTTTCTGTTT+TGG | 0.240114 | 8_4:+4820484 | Msa1308510:CDS |
TATTGACAGCACTTATTTAC+AGG | 0.261599 | 8_4:+4821251 | Msa1308510:CDS |
AATTATATAACGCGTGATTC+GGG | 0.262660 | 8_4:+4820835 | Msa1308510:CDS |
TACTTTCTCAGGATGTAATA+TGG | 0.288296 | 8_4:-4820453 | None:intergenic |
CTTGTTACCCATGCGAATTT+TGG | 0.288794 | 8_4:-4821283 | None:intergenic |
TACCTTCTCTAATAAAATTT+GGG | 0.314007 | 8_4:-4820634 | None:intergenic |
ATAATTATTCCTCCTGATCT+TGG | 0.323150 | 8_4:+4821476 | Msa1308510:CDS |
TAATTATATAACGCGTGATT+CGG | 0.333744 | 8_4:+4820834 | Msa1308510:CDS |
AACTACTTTAGAACCTGATT+TGG | 0.344434 | 8_4:+4820223 | None:intergenic |
CTTCAGCACAAATATTAGTT+AGG | 0.348119 | 8_4:+4822122 | Msa1308510:three_prime_UTR |
TTCCTCCTTAATACTTTCTC+AGG | 0.354488 | 8_4:-4820464 | None:intergenic |
TCACGCGTTATATAATTATC+TGG | 0.372515 | 8_4:-4820829 | None:intergenic |
TACATCCTGAGAAAGTATTA+AGG | 0.373534 | 8_4:+4820459 | Msa1308510:CDS |
CACTCTTACATGGAATCCTT+TGG | 0.373861 | 8_4:-4820339 | None:intergenic |
CTTTATCAGAATACCAAATC+AGG | 0.374037 | 8_4:-4820236 | None:intergenic |
ATAAAATTTGGGAAGTCATC+TGG | 0.374287 | 8_4:-4820623 | None:intergenic |
GGTAACAAGGCATTGGTTCC+AGG | 0.384493 | 8_4:+4821297 | Msa1308510:CDS |
CACTTATTTACAGGGTTCTC+CGG | 0.422942 | 8_4:+4821260 | Msa1308510:CDS |
AAAACCTGCTGACCATCCTT+TGG | 0.437003 | 8_4:-4820898 | None:intergenic |
TAAATTATGATATTACTTTG+AGG | 0.444154 | 8_4:+4822148 | Msa1308510:three_prime_UTR |
CAGGTCACATTTCACTATGT+TGG | 0.449348 | 8_4:+4821207 | Msa1308510:intron |
AACGTGTCTTACAACAAAAC+AGG | 0.454819 | 8_4:+4820576 | Msa1308510:CDS |
TTTGCATGAGAAGATAAAGT+TGG | 0.475317 | 8_4:-4820524 | None:intergenic |
TGTATTTATGGATAGAGTGC+AGG | 0.475495 | 8_4:+4820424 | Msa1308510:intron |
GTAAATAAGTGCTGTCAATA+CGG | 0.482227 | 8_4:-4821248 | None:intergenic |
TATGTTGGCTATAATGAATC+CGG | 0.489665 | 8_4:+4821222 | Msa1308510:CDS |
TCCTCCTGATCTTGGACCCC+CGG | 0.496637 | 8_4:+4821484 | Msa1308510:CDS |
ACTTTCTGATGTAGGATTCG+AGG | 0.517255 | 8_4:+4821415 | Msa1308510:intron |
CAAAATTCGCATGGGTAACA+AGG | 0.517528 | 8_4:+4821284 | Msa1308510:CDS |
AACATCAGAGTAAAATCCTA+TGG | 0.519964 | 8_4:-4822071 | None:intergenic |
TTGTCCAAAGGATGGTCAGC+AGG | 0.523009 | 8_4:+4820894 | Msa1308510:CDS |
GCCATTTCGATCATCGAGAA+AGG | 0.532169 | 8_4:+4822206 | Msa1308510:intron |
TCGCATGGGTAACAAGGCAT+TGG | 0.532556 | 8_4:+4821290 | Msa1308510:CDS |
AGTGCTGTCAATACGGCGGC+CGG | 0.534449 | 8_4:-4821241 | None:intergenic |
AAATTCCTTTGTACTGTACA+AGG | 0.540843 | 8_4:+4820279 | Msa1308510:CDS |
CTGAACCAACTTCAAAATCT+CGG | 0.546315 | 8_4:-4820867 | None:intergenic |
TTCTCCGGCCAAAATTCGCA+TGG | 0.552997 | 8_4:+4821275 | Msa1308510:CDS |
GGAATTAGAGACATGAGAGC+AGG | 0.554241 | 8_4:+4821440 | Msa1308510:CDS |
ATTAGAGACATGAGAGCAGG+TGG | 0.575545 | 8_4:+4821443 | Msa1308510:CDS |
CTTTGTACTGTACAAGGACA+AGG | 0.579709 | 8_4:+4820285 | Msa1308510:CDS |
ATTGACAGCACTTATTTACA+GGG | 0.583530 | 8_4:+4821252 | Msa1308510:CDS |
AACTGTGAAAGAAGAACCAT+AGG | 0.596337 | 8_4:+4822055 | Msa1308510:CDS |
GGACAAGGACAATCAACTCA+TGG | 0.598798 | 8_4:+4820300 | Msa1308510:CDS |
TGGTTCAGGTGATTGTCCAA+AGG | 0.612509 | 8_4:+4820882 | Msa1308510:CDS |
ATTATATAACGCGTGATTCG+GGG | 0.614564 | 8_4:+4820836 | Msa1308510:CDS |
TCAGGTGATTGTCCAAAGGA+TGG | 0.615901 | 8_4:+4820886 | Msa1308510:CDS |
CTTGTCCTTGTACAGTACAA+AGG | 0.628806 | 8_4:-4820284 | None:intergenic |
TCTGATGTAGGATTCGAGGA+AGG | 0.631567 | 8_4:+4821419 | Msa1308510:intron |
TCTCCGGCCAAAATTCGCAT+GGG | 0.643150 | 8_4:+4821276 | Msa1308510:CDS |
ATCCTGAGAAAGTATTAAGG+AGG | 0.647507 | 8_4:+4820462 | Msa1308510:CDS |
AATAAGTGCTGTCAATACGG+CGG | 0.736335 | 8_4:-4821245 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTTATCTTAATTGTT+TGG | + | chr8_4:4820959-4820978 | Msa1308510:intron | 10.0% |
!!! | AATTTTTATCTTAATTGTTT+GGG | + | chr8_4:4820960-4820979 | Msa1308510:intron | 10.0% |
!!! | TAATTTTTATCTTAATTGTT+TGG | + | chr8_4:4820959-4820978 | Msa1308510:intron | 10.0% |
!!! | AATTTTTATCTTAATTGTTT+GGG | + | chr8_4:4820960-4820979 | Msa1308510:intron | 10.0% |
!!! | ATTTTTATCTTAATTGTTTG+GGG | + | chr8_4:4820961-4820980 | Msa1308510:intron | 15.0% |
!!! | TCATTTTCTCAAATTATTAT+CGG | - | chr8_4:4821629-4821648 | None:intergenic | 15.0% |
!! | TAAATTATGATATTACTTTG+AGG | + | chr8_4:4822148-4822167 | Msa1308510:three_prime_UTR | 15.0% |
!!! | ATTTTTATCTTAATTGTTTG+GGG | + | chr8_4:4820961-4820980 | Msa1308510:intron | 15.0% |
!!! | TCATTTTCTCAAATTATTAT+CGG | - | chr8_4:4821629-4821648 | None:intergenic | 15.0% |
!! | TAAATTATGATATTACTTTG+AGG | + | chr8_4:4822148-4822167 | Msa1308510:three_prime_UTR | 15.0% |
!!! | GCATTTTTTGTTTGTATTTA+TGG | + | chr8_4:4820412-4820431 | Msa1308510:intron | 20.0% |
!!! | ATTATACGGATTCATATTTT+TGG | - | chr8_4:4820552-4820571 | None:intergenic | 20.0% |
!! | TACCTTCTCTAATAAAATTT+GGG | - | chr8_4:4820637-4820656 | None:intergenic | 20.0% |
!! | TTACCTTCTCTAATAAAATT+TGG | - | chr8_4:4820638-4820657 | None:intergenic | 20.0% |
!! | AATCATGTATGAAAAAACAA+TGG | - | chr8_4:4820664-4820683 | None:intergenic | 20.0% |
!!! | GGTTTATTAATATACTTTTC+AGG | + | chr8_4:4820784-4820803 | Msa1308510:intron | 20.0% |
!!! | TTTTTATCTTAATTGTTTGG+GGG | + | chr8_4:4820962-4820981 | Msa1308510:intron | 20.0% |
!! | AAGAAGTTAACACAAATATT+AGG | + | chr8_4:4820985-4821004 | Msa1308510:intron | 20.0% |
!!! | TCACATAATTTTCTACATTA+CGG | + | chr8_4:4821887-4821906 | Msa1308510:intron | 20.0% |
!!! | GCATTTTTTGTTTGTATTTA+TGG | + | chr8_4:4820412-4820431 | Msa1308510:intron | 20.0% |
!!! | ATTATACGGATTCATATTTT+TGG | - | chr8_4:4820552-4820571 | None:intergenic | 20.0% |
!! | TACCTTCTCTAATAAAATTT+GGG | - | chr8_4:4820637-4820656 | None:intergenic | 20.0% |
!! | TTACCTTCTCTAATAAAATT+TGG | - | chr8_4:4820638-4820657 | None:intergenic | 20.0% |
!! | AATCATGTATGAAAAAACAA+TGG | - | chr8_4:4820664-4820683 | None:intergenic | 20.0% |
!!! | GGTTTATTAATATACTTTTC+AGG | + | chr8_4:4820784-4820803 | Msa1308510:intron | 20.0% |
!!! | TTTTTATCTTAATTGTTTGG+GGG | + | chr8_4:4820962-4820981 | Msa1308510:intron | 20.0% |
!! | AAGAAGTTAACACAAATATT+AGG | + | chr8_4:4820985-4821004 | Msa1308510:intron | 20.0% |
!!! | TCACATAATTTTCTACATTA+CGG | + | chr8_4:4821887-4821906 | Msa1308510:intron | 20.0% |
!!! | TGATAAAGCATTTCCTTTTT+TGG | + | chr8_4:4820251-4820270 | Msa1308510:CDS | 25.0% |
! | ATGCACTAATAAAAAACCAA+AGG | + | chr8_4:4820323-4820342 | Msa1308510:CDS | 25.0% |
! | AAAATAATGTCACTCTTACA+TGG | - | chr8_4:4820352-4820371 | None:intergenic | 25.0% |
!! | AGTGACATTATTTTCTTGAA+TGG | + | chr8_4:4820358-4820377 | Msa1308510:intron | 25.0% |
!! | AAGACACGTTTTTCATTATA+CGG | - | chr8_4:4820566-4820585 | None:intergenic | 25.0% |
!! | TTCCCAAATTTTATTAGAGA+AGG | + | chr8_4:4820632-4820651 | Msa1308510:CDS | 25.0% |
! | TAATTATATAACGCGTGATT+CGG | + | chr8_4:4820834-4820853 | Msa1308510:CDS | 25.0% |
! | CAAAGAAAGAAATAGTTGAT+TGG | - | chr8_4:4820939-4820958 | None:intergenic | 25.0% |
! | TTAGCAGTAATTATCAAACA+TGG | - | chr8_4:4821562-4821581 | None:intergenic | 25.0% |
! | AAAACATTGCCTATACATAA+GGG | - | chr8_4:4821793-4821812 | None:intergenic | 25.0% |
! | TAAAACATTGCCTATACATA+AGG | - | chr8_4:4821794-4821813 | None:intergenic | 25.0% |
!! | ACATGCATAGTTTAAAATTG+TGG | - | chr8_4:4821932-4821951 | None:intergenic | 25.0% |
!! | AATTTTAAACTATGCATGTG+TGG | + | chr8_4:4821933-4821952 | Msa1308510:intron | 25.0% |
!! | ATTTTAAACTATGCATGTGT+GGG | + | chr8_4:4821934-4821953 | Msa1308510:intron | 25.0% |
!!! | TCAAGTATTCTTTGTTGTTT+TGG | + | chr8_4:4822177-4822196 | Msa1308510:intron | 25.0% |
!!! | TGATAAAGCATTTCCTTTTT+TGG | + | chr8_4:4820251-4820270 | Msa1308510:CDS | 25.0% |
! | ATGCACTAATAAAAAACCAA+AGG | + | chr8_4:4820323-4820342 | Msa1308510:CDS | 25.0% |
! | AAAATAATGTCACTCTTACA+TGG | - | chr8_4:4820352-4820371 | None:intergenic | 25.0% |
!! | AGTGACATTATTTTCTTGAA+TGG | + | chr8_4:4820358-4820377 | Msa1308510:intron | 25.0% |
!! | AAGACACGTTTTTCATTATA+CGG | - | chr8_4:4820566-4820585 | None:intergenic | 25.0% |
!! | TTCCCAAATTTTATTAGAGA+AGG | + | chr8_4:4820632-4820651 | Msa1308510:CDS | 25.0% |
! | TAATTATATAACGCGTGATT+CGG | + | chr8_4:4820834-4820853 | Msa1308510:CDS | 25.0% |
! | CAAAGAAAGAAATAGTTGAT+TGG | - | chr8_4:4820939-4820958 | None:intergenic | 25.0% |
! | TTAGCAGTAATTATCAAACA+TGG | - | chr8_4:4821562-4821581 | None:intergenic | 25.0% |
! | AAAACATTGCCTATACATAA+GGG | - | chr8_4:4821793-4821812 | None:intergenic | 25.0% |
! | TAAAACATTGCCTATACATA+AGG | - | chr8_4:4821794-4821813 | None:intergenic | 25.0% |
!! | ACATGCATAGTTTAAAATTG+TGG | - | chr8_4:4821932-4821951 | None:intergenic | 25.0% |
!! | AATTTTAAACTATGCATGTG+TGG | + | chr8_4:4821933-4821952 | Msa1308510:intron | 25.0% |
!! | ATTTTAAACTATGCATGTGT+GGG | + | chr8_4:4821934-4821953 | Msa1308510:intron | 25.0% |
!!! | TCAAGTATTCTTTGTTGTTT+TGG | + | chr8_4:4822177-4822196 | Msa1308510:intron | 25.0% |
CTTTATCAGAATACCAAATC+AGG | - | chr8_4:4820239-4820258 | None:intergenic | 30.0% | |
! | AGGAATTTTACTGCCAAAAA+AGG | - | chr8_4:4820267-4820286 | None:intergenic | 30.0% |
AAATTCCTTTGTACTGTACA+AGG | + | chr8_4:4820279-4820298 | Msa1308510:CDS | 30.0% | |
TTTCATCTAATATCCTTCTG+AGG | + | chr8_4:4820388-4820407 | Msa1308510:intron | 30.0% | |
TTCATCTAATATCCTTCTGA+GGG | + | chr8_4:4820389-4820408 | Msa1308510:intron | 30.0% | |
TACTTTCTCAGGATGTAATA+TGG | - | chr8_4:4820456-4820475 | None:intergenic | 30.0% | |
!! | TACATCCTGAGAAAGTATTA+AGG | + | chr8_4:4820459-4820478 | Msa1308510:CDS | 30.0% |
TTTGCATGAGAAGATAAAGT+TGG | - | chr8_4:4820527-4820546 | None:intergenic | 30.0% | |
ATAAAATTTGGGAAGTCATC+TGG | - | chr8_4:4820626-4820645 | None:intergenic | 30.0% | |
! | AGTTGTTTGTGTCAAACTTT+TGG | + | chr8_4:4820749-4820768 | Msa1308510:intron | 30.0% |
! | AACTTTTGGATATGATGTTC+TGG | + | chr8_4:4820763-4820782 | Msa1308510:intron | 30.0% |
TCACGCGTTATATAATTATC+TGG | - | chr8_4:4820832-4820851 | None:intergenic | 30.0% | |
AATTATATAACGCGTGATTC+GGG | + | chr8_4:4820835-4820854 | Msa1308510:CDS | 30.0% | |
!!! | ATATACCGAGATTTTGAAGT+TGG | + | chr8_4:4820862-4820881 | Msa1308510:CDS | 30.0% |
!! | CTTGATGAGTTTGTTGAAAT+GGG | + | chr8_4:4821081-4821100 | Msa1308510:intron | 30.0% |
!! | TTGATGAGTTTGTTGAAATG+GGG | + | chr8_4:4821082-4821101 | Msa1308510:intron | 30.0% |
TTTGTTGAAATGGGGAAAAT+TGG | + | chr8_4:4821090-4821109 | Msa1308510:intron | 30.0% | |
! | TATGTTGGCTATAATGAATC+CGG | + | chr8_4:4821222-4821241 | Msa1308510:CDS | 30.0% |
! | GTAAATAAGTGCTGTCAATA+CGG | - | chr8_4:4821251-4821270 | None:intergenic | 30.0% |
TATTGACAGCACTTATTTAC+AGG | + | chr8_4:4821251-4821270 | Msa1308510:CDS | 30.0% | |
ATTGACAGCACTTATTTACA+GGG | + | chr8_4:4821252-4821271 | Msa1308510:CDS | 30.0% | |
!!! | CTATTCTTCCTTTTTTTACC+TGG | - | chr8_4:4821318-4821337 | None:intergenic | 30.0% |
ATAATTATTCCTCCTGATCT+TGG | + | chr8_4:4821476-4821495 | Msa1308510:CDS | 30.0% | |
AAAGAGAATAAGAGATGTAC+CGG | - | chr8_4:4821506-4821525 | None:intergenic | 30.0% | |
GTTGCTAAAAACTTATGCTA+AGG | + | chr8_4:4821739-4821758 | Msa1308510:intron | 30.0% | |
GTTTATCTTCCCTTATGTAT+AGG | + | chr8_4:4821781-4821800 | Msa1308510:intron | 30.0% | |
TTTGAGCTGAAAAATGTTGA+AGG | - | chr8_4:4821995-4822014 | None:intergenic | 30.0% | |
AACATCAGAGTAAAATCCTA+TGG | - | chr8_4:4822074-4822093 | None:intergenic | 30.0% | |
CTTCAGCACAAATATTAGTT+AGG | + | chr8_4:4822122-4822141 | Msa1308510:three_prime_UTR | 30.0% | |
CTTTATCAGAATACCAAATC+AGG | - | chr8_4:4820239-4820258 | None:intergenic | 30.0% | |
! | AGGAATTTTACTGCCAAAAA+AGG | - | chr8_4:4820267-4820286 | None:intergenic | 30.0% |
AAATTCCTTTGTACTGTACA+AGG | + | chr8_4:4820279-4820298 | Msa1308510:CDS | 30.0% | |
TTTCATCTAATATCCTTCTG+AGG | + | chr8_4:4820388-4820407 | Msa1308510:intron | 30.0% | |
TTCATCTAATATCCTTCTGA+GGG | + | chr8_4:4820389-4820408 | Msa1308510:intron | 30.0% | |
TACTTTCTCAGGATGTAATA+TGG | - | chr8_4:4820456-4820475 | None:intergenic | 30.0% | |
!! | TACATCCTGAGAAAGTATTA+AGG | + | chr8_4:4820459-4820478 | Msa1308510:CDS | 30.0% |
TTTGCATGAGAAGATAAAGT+TGG | - | chr8_4:4820527-4820546 | None:intergenic | 30.0% | |
ATAAAATTTGGGAAGTCATC+TGG | - | chr8_4:4820626-4820645 | None:intergenic | 30.0% | |
! | AGTTGTTTGTGTCAAACTTT+TGG | + | chr8_4:4820749-4820768 | Msa1308510:intron | 30.0% |
! | AACTTTTGGATATGATGTTC+TGG | + | chr8_4:4820763-4820782 | Msa1308510:intron | 30.0% |
TCACGCGTTATATAATTATC+TGG | - | chr8_4:4820832-4820851 | None:intergenic | 30.0% | |
AATTATATAACGCGTGATTC+GGG | + | chr8_4:4820835-4820854 | Msa1308510:CDS | 30.0% | |
!!! | ATATACCGAGATTTTGAAGT+TGG | + | chr8_4:4820862-4820881 | Msa1308510:CDS | 30.0% |
!! | CTTGATGAGTTTGTTGAAAT+GGG | + | chr8_4:4821081-4821100 | Msa1308510:intron | 30.0% |
!! | TTGATGAGTTTGTTGAAATG+GGG | + | chr8_4:4821082-4821101 | Msa1308510:intron | 30.0% |
TTTGTTGAAATGGGGAAAAT+TGG | + | chr8_4:4821090-4821109 | Msa1308510:intron | 30.0% | |
! | TATGTTGGCTATAATGAATC+CGG | + | chr8_4:4821222-4821241 | Msa1308510:CDS | 30.0% |
! | GTAAATAAGTGCTGTCAATA+CGG | - | chr8_4:4821251-4821270 | None:intergenic | 30.0% |
TATTGACAGCACTTATTTAC+AGG | + | chr8_4:4821251-4821270 | Msa1308510:CDS | 30.0% | |
ATTGACAGCACTTATTTACA+GGG | + | chr8_4:4821252-4821271 | Msa1308510:CDS | 30.0% | |
!!! | CTATTCTTCCTTTTTTTACC+TGG | - | chr8_4:4821318-4821337 | None:intergenic | 30.0% |
ATAATTATTCCTCCTGATCT+TGG | + | chr8_4:4821476-4821495 | Msa1308510:CDS | 30.0% | |
AAAGAGAATAAGAGATGTAC+CGG | - | chr8_4:4821506-4821525 | None:intergenic | 30.0% | |
GTTGCTAAAAACTTATGCTA+AGG | + | chr8_4:4821739-4821758 | Msa1308510:intron | 30.0% | |
GTTTATCTTCCCTTATGTAT+AGG | + | chr8_4:4821781-4821800 | Msa1308510:intron | 30.0% | |
TTTGAGCTGAAAAATGTTGA+AGG | - | chr8_4:4821995-4822014 | None:intergenic | 30.0% | |
AACATCAGAGTAAAATCCTA+TGG | - | chr8_4:4822074-4822093 | None:intergenic | 30.0% | |
CTTCAGCACAAATATTAGTT+AGG | + | chr8_4:4822122-4822141 | Msa1308510:three_prime_UTR | 30.0% | |
TCATCTAATATCCTTCTGAG+GGG | + | chr8_4:4820390-4820409 | Msa1308510:intron | 35.0% | |
TGTATTTATGGATAGAGTGC+AGG | + | chr8_4:4820424-4820443 | Msa1308510:intron | 35.0% | |
!! | ATCCTGAGAAAGTATTAAGG+AGG | + | chr8_4:4820462-4820481 | Msa1308510:CDS | 35.0% |
TTCCTCCTTAATACTTTCTC+AGG | - | chr8_4:4820467-4820486 | None:intergenic | 35.0% | |
AACGTGTCTTACAACAAAAC+AGG | + | chr8_4:4820576-4820595 | Msa1308510:CDS | 35.0% | |
ATTATATAACGCGTGATTCG+GGG | + | chr8_4:4820836-4820855 | Msa1308510:CDS | 35.0% | |
CTGAACCAACTTCAAAATCT+CGG | - | chr8_4:4820870-4820889 | None:intergenic | 35.0% | |
GAGAACTGAAATTGTCTCTA+TGG | + | chr8_4:4821024-4821043 | Msa1308510:intron | 35.0% | |
! | TATGGAGTAGTATTTTGCAG+TGG | + | chr8_4:4821042-4821061 | Msa1308510:intron | 35.0% |
! | CATCAAGGTATTTAGAGTAG+TGG | - | chr8_4:4821068-4821087 | None:intergenic | 35.0% |
CCATTTCAACAAACTCATCA+AGG | - | chr8_4:4821083-4821102 | None:intergenic | 35.0% | |
!! | CCTTGATGAGTTTGTTGAAA+TGG | + | chr8_4:4821080-4821099 | Msa1308510:intron | 35.0% |
!! | CATTGGTTCCAGGTAAAAAA+AGG | + | chr8_4:4821307-4821326 | Msa1308510:intron | 35.0% |
TGACAAAAAGCTTTCGTCAT+TGG | + | chr8_4:4821371-4821390 | Msa1308510:intron | 35.0% | |
AAGAGAATAAGAGATGTACC+GGG | - | chr8_4:4821505-4821524 | None:intergenic | 35.0% | |
GTAATCACATATGTCGATGT+CGG | + | chr8_4:4821656-4821675 | Msa1308510:intron | 35.0% | |
! | ACTCTAATCAAAGGCATGTT+CGG | - | chr8_4:4821702-4821721 | None:intergenic | 35.0% |
! | CTTGATGTTTTGTCTTTTGC+AGG | + | chr8_4:4821964-4821983 | Msa1308510:intron | 35.0% |
! | ATGTTTTGTCTTTTGCAGGT+AGG | + | chr8_4:4821968-4821987 | Msa1308510:intron | 35.0% |
! | TGGTTCTTCTTTCACAGTTT+TGG | - | chr8_4:4822054-4822073 | None:intergenic | 35.0% |
AACTGTGAAAGAAGAACCAT+AGG | + | chr8_4:4822055-4822074 | Msa1308510:CDS | 35.0% | |
TCATCTAATATCCTTCTGAG+GGG | + | chr8_4:4820390-4820409 | Msa1308510:intron | 35.0% | |
TGTATTTATGGATAGAGTGC+AGG | + | chr8_4:4820424-4820443 | Msa1308510:intron | 35.0% | |
!! | ATCCTGAGAAAGTATTAAGG+AGG | + | chr8_4:4820462-4820481 | Msa1308510:CDS | 35.0% |
TTCCTCCTTAATACTTTCTC+AGG | - | chr8_4:4820467-4820486 | None:intergenic | 35.0% | |
AACGTGTCTTACAACAAAAC+AGG | + | chr8_4:4820576-4820595 | Msa1308510:CDS | 35.0% | |
ATTATATAACGCGTGATTCG+GGG | + | chr8_4:4820836-4820855 | Msa1308510:CDS | 35.0% | |
CTGAACCAACTTCAAAATCT+CGG | - | chr8_4:4820870-4820889 | None:intergenic | 35.0% | |
GAGAACTGAAATTGTCTCTA+TGG | + | chr8_4:4821024-4821043 | Msa1308510:intron | 35.0% | |
! | TATGGAGTAGTATTTTGCAG+TGG | + | chr8_4:4821042-4821061 | Msa1308510:intron | 35.0% |
! | CATCAAGGTATTTAGAGTAG+TGG | - | chr8_4:4821068-4821087 | None:intergenic | 35.0% |
CCATTTCAACAAACTCATCA+AGG | - | chr8_4:4821083-4821102 | None:intergenic | 35.0% | |
!! | CCTTGATGAGTTTGTTGAAA+TGG | + | chr8_4:4821080-4821099 | Msa1308510:intron | 35.0% |
!! | CATTGGTTCCAGGTAAAAAA+AGG | + | chr8_4:4821307-4821326 | Msa1308510:intron | 35.0% |
TGACAAAAAGCTTTCGTCAT+TGG | + | chr8_4:4821371-4821390 | Msa1308510:intron | 35.0% | |
AAGAGAATAAGAGATGTACC+GGG | - | chr8_4:4821505-4821524 | None:intergenic | 35.0% | |
GTAATCACATATGTCGATGT+CGG | + | chr8_4:4821656-4821675 | Msa1308510:intron | 35.0% | |
! | ACTCTAATCAAAGGCATGTT+CGG | - | chr8_4:4821702-4821721 | None:intergenic | 35.0% |
! | CTTGATGTTTTGTCTTTTGC+AGG | + | chr8_4:4821964-4821983 | Msa1308510:intron | 35.0% |
! | ATGTTTTGTCTTTTGCAGGT+AGG | + | chr8_4:4821968-4821987 | Msa1308510:intron | 35.0% |
! | TGGTTCTTCTTTCACAGTTT+TGG | - | chr8_4:4822054-4822073 | None:intergenic | 35.0% |
AACTGTGAAAGAAGAACCAT+AGG | + | chr8_4:4822055-4822074 | Msa1308510:CDS | 35.0% | |
CTTGTCCTTGTACAGTACAA+AGG | - | chr8_4:4820287-4820306 | None:intergenic | 40.0% | |
CTTTGTACTGTACAAGGACA+AGG | + | chr8_4:4820285-4820304 | Msa1308510:CDS | 40.0% | |
CACTCTTACATGGAATCCTT+TGG | - | chr8_4:4820342-4820361 | None:intergenic | 40.0% | |
AACAAAAAATGCCCCTCAGA+AGG | - | chr8_4:4820404-4820423 | None:intergenic | 40.0% | |
! | GAAACTTGCGCTTTCTGTTT+TGG | + | chr8_4:4820484-4820503 | Msa1308510:CDS | 40.0% |
CAAACAACTGTGACACTTAC+AGG | - | chr8_4:4820738-4820757 | None:intergenic | 40.0% | |
!!! | CGAGATTTTGAAGTTGGTTC+AGG | + | chr8_4:4820868-4820887 | Msa1308510:CDS | 40.0% |
TACATTATACCATGCCTTGC+AGG | + | chr8_4:4821188-4821207 | Msa1308510:intron | 40.0% | |
ATAGTGAAATGTGACCTGCA+AGG | - | chr8_4:4821205-4821224 | None:intergenic | 40.0% | |
CAGGTCACATTTCACTATGT+TGG | + | chr8_4:4821207-4821226 | Msa1308510:intron | 40.0% | |
! | AATAAGTGCTGTCAATACGG+CGG | - | chr8_4:4821248-4821267 | None:intergenic | 40.0% |
CACTTATTTACAGGGTTCTC+CGG | + | chr8_4:4821260-4821279 | Msa1308510:CDS | 40.0% | |
! | CTTGTTACCCATGCGAATTT+TGG | - | chr8_4:4821286-4821305 | None:intergenic | 40.0% |
CAAAATTCGCATGGGTAACA+AGG | + | chr8_4:4821284-4821303 | Msa1308510:CDS | 40.0% | |
TTCTCCACACTTTCTGATGT+AGG | + | chr8_4:4821407-4821426 | Msa1308510:intron | 40.0% | |
GAATCCTACATCAGAAAGTG+TGG | - | chr8_4:4821414-4821433 | None:intergenic | 40.0% | |
ACTTTCTGATGTAGGATTCG+AGG | + | chr8_4:4821415-4821434 | Msa1308510:intron | 40.0% | |
AGAGAATAAGAGATGTACCG+GGG | - | chr8_4:4821504-4821523 | None:intergenic | 40.0% | |
CATGCCTTTGATTAGAGTGT+CGG | + | chr8_4:4821704-4821723 | Msa1308510:intron | 40.0% | |
TTGCTTTCGTGATGTAGTTG+TGG | + | chr8_4:4821861-4821880 | Msa1308510:intron | 40.0% | |
TCTACATTACGGCCACAATT+AGG | + | chr8_4:4821898-4821917 | Msa1308510:intron | 40.0% | |
CTACATTACGGCCACAATTA+GGG | + | chr8_4:4821899-4821918 | Msa1308510:intron | 40.0% | |
TCCTTTCTCGATGATCGAAA+TGG | - | chr8_4:4822210-4822229 | None:intergenic | 40.0% | |
CTTGTCCTTGTACAGTACAA+AGG | - | chr8_4:4820287-4820306 | None:intergenic | 40.0% | |
CTTTGTACTGTACAAGGACA+AGG | + | chr8_4:4820285-4820304 | Msa1308510:CDS | 40.0% | |
CACTCTTACATGGAATCCTT+TGG | - | chr8_4:4820342-4820361 | None:intergenic | 40.0% | |
AACAAAAAATGCCCCTCAGA+AGG | - | chr8_4:4820404-4820423 | None:intergenic | 40.0% | |
! | GAAACTTGCGCTTTCTGTTT+TGG | + | chr8_4:4820484-4820503 | Msa1308510:CDS | 40.0% |
CAAACAACTGTGACACTTAC+AGG | - | chr8_4:4820738-4820757 | None:intergenic | 40.0% | |
!!! | CGAGATTTTGAAGTTGGTTC+AGG | + | chr8_4:4820868-4820887 | Msa1308510:CDS | 40.0% |
TACATTATACCATGCCTTGC+AGG | + | chr8_4:4821188-4821207 | Msa1308510:intron | 40.0% | |
ATAGTGAAATGTGACCTGCA+AGG | - | chr8_4:4821205-4821224 | None:intergenic | 40.0% | |
CAGGTCACATTTCACTATGT+TGG | + | chr8_4:4821207-4821226 | Msa1308510:intron | 40.0% | |
! | AATAAGTGCTGTCAATACGG+CGG | - | chr8_4:4821248-4821267 | None:intergenic | 40.0% |
CACTTATTTACAGGGTTCTC+CGG | + | chr8_4:4821260-4821279 | Msa1308510:CDS | 40.0% | |
! | CTTGTTACCCATGCGAATTT+TGG | - | chr8_4:4821286-4821305 | None:intergenic | 40.0% |
CAAAATTCGCATGGGTAACA+AGG | + | chr8_4:4821284-4821303 | Msa1308510:CDS | 40.0% | |
TTCTCCACACTTTCTGATGT+AGG | + | chr8_4:4821407-4821426 | Msa1308510:intron | 40.0% | |
GAATCCTACATCAGAAAGTG+TGG | - | chr8_4:4821414-4821433 | None:intergenic | 40.0% | |
ACTTTCTGATGTAGGATTCG+AGG | + | chr8_4:4821415-4821434 | Msa1308510:intron | 40.0% | |
AGAGAATAAGAGATGTACCG+GGG | - | chr8_4:4821504-4821523 | None:intergenic | 40.0% | |
CATGCCTTTGATTAGAGTGT+CGG | + | chr8_4:4821704-4821723 | Msa1308510:intron | 40.0% | |
TTGCTTTCGTGATGTAGTTG+TGG | + | chr8_4:4821861-4821880 | Msa1308510:intron | 40.0% | |
TCTACATTACGGCCACAATT+AGG | + | chr8_4:4821898-4821917 | Msa1308510:intron | 40.0% | |
CTACATTACGGCCACAATTA+GGG | + | chr8_4:4821899-4821918 | Msa1308510:intron | 40.0% | |
TCCTTTCTCGATGATCGAAA+TGG | - | chr8_4:4822210-4822229 | None:intergenic | 40.0% | |
GGACAAGGACAATCAACTCA+TGG | + | chr8_4:4820300-4820319 | Msa1308510:CDS | 45.0% | |
TGGTTCAGGTGATTGTCCAA+AGG | + | chr8_4:4820882-4820901 | Msa1308510:CDS | 45.0% | |
TCAGGTGATTGTCCAAAGGA+TGG | + | chr8_4:4820886-4820905 | Msa1308510:CDS | 45.0% | |
AAAACCTGCTGACCATCCTT+TGG | - | chr8_4:4820901-4820920 | None:intergenic | 45.0% | |
!! | TTACCCATGCGAATTTTGGC+CGG | - | chr8_4:4821282-4821301 | None:intergenic | 45.0% |
TCTGATGTAGGATTCGAGGA+AGG | + | chr8_4:4821419-4821438 | Msa1308510:intron | 45.0% | |
GGAATTAGAGACATGAGAGC+AGG | + | chr8_4:4821440-4821459 | Msa1308510:CDS | 45.0% | |
ATTAGAGACATGAGAGCAGG+TGG | + | chr8_4:4821443-4821462 | Msa1308510:CDS | 45.0% | |
GAGAATAAGAGATGTACCGG+GGG | - | chr8_4:4821503-4821522 | None:intergenic | 45.0% | |
CTCGCAGGTACATTAGTGAA+TGG | - | chr8_4:4821534-4821553 | None:intergenic | 45.0% | |
TCAAACATGGAAAGACTCGC+AGG | - | chr8_4:4821549-4821568 | None:intergenic | 45.0% | |
GGTGTCAACGTGTACATGTT+TGG | - | chr8_4:4821608-4821627 | None:intergenic | 45.0% | |
ATCGCCGACACTCTAATCAA+AGG | - | chr8_4:4821711-4821730 | None:intergenic | 45.0% | |
GCCATTTCGATCATCGAGAA+AGG | + | chr8_4:4822206-4822225 | Msa1308510:intron | 45.0% | |
GGACAAGGACAATCAACTCA+TGG | + | chr8_4:4820300-4820319 | Msa1308510:CDS | 45.0% | |
TGGTTCAGGTGATTGTCCAA+AGG | + | chr8_4:4820882-4820901 | Msa1308510:CDS | 45.0% | |
TCAGGTGATTGTCCAAAGGA+TGG | + | chr8_4:4820886-4820905 | Msa1308510:CDS | 45.0% | |
AAAACCTGCTGACCATCCTT+TGG | - | chr8_4:4820901-4820920 | None:intergenic | 45.0% | |
!! | TTACCCATGCGAATTTTGGC+CGG | - | chr8_4:4821282-4821301 | None:intergenic | 45.0% |
TCTGATGTAGGATTCGAGGA+AGG | + | chr8_4:4821419-4821438 | Msa1308510:intron | 45.0% | |
GGAATTAGAGACATGAGAGC+AGG | + | chr8_4:4821440-4821459 | Msa1308510:CDS | 45.0% | |
ATTAGAGACATGAGAGCAGG+TGG | + | chr8_4:4821443-4821462 | Msa1308510:CDS | 45.0% | |
GAGAATAAGAGATGTACCGG+GGG | - | chr8_4:4821503-4821522 | None:intergenic | 45.0% | |
CTCGCAGGTACATTAGTGAA+TGG | - | chr8_4:4821534-4821553 | None:intergenic | 45.0% | |
TCAAACATGGAAAGACTCGC+AGG | - | chr8_4:4821549-4821568 | None:intergenic | 45.0% | |
GGTGTCAACGTGTACATGTT+TGG | - | chr8_4:4821608-4821627 | None:intergenic | 45.0% | |
ATCGCCGACACTCTAATCAA+AGG | - | chr8_4:4821711-4821730 | None:intergenic | 45.0% | |
GCCATTTCGATCATCGAGAA+AGG | + | chr8_4:4822206-4822225 | Msa1308510:intron | 45.0% | |
CTTACAGGAGAGACATCGCA+GGG | - | chr8_4:4820723-4820742 | None:intergenic | 50.0% | |
ACTTACAGGAGAGACATCGC+AGG | - | chr8_4:4820724-4820743 | None:intergenic | 50.0% | |
TTGTCCAAAGGATGGTCAGC+AGG | + | chr8_4:4820894-4820913 | Msa1308510:CDS | 50.0% | |
GAAATGTGACCTGCAAGGCA+TGG | - | chr8_4:4821200-4821219 | None:intergenic | 50.0% | |
TTCTCCGGCCAAAATTCGCA+TGG | + | chr8_4:4821275-4821294 | Msa1308510:CDS | 50.0% | |
TCTCCGGCCAAAATTCGCAT+GGG | + | chr8_4:4821276-4821295 | Msa1308510:CDS | 50.0% | |
TCGCATGGGTAACAAGGCAT+TGG | + | chr8_4:4821290-4821309 | Msa1308510:CDS | 50.0% | |
!! | GGTAACAAGGCATTGGTTCC+AGG | + | chr8_4:4821297-4821316 | Msa1308510:CDS | 50.0% |
CTTACAGGAGAGACATCGCA+GGG | - | chr8_4:4820723-4820742 | None:intergenic | 50.0% | |
ACTTACAGGAGAGACATCGC+AGG | - | chr8_4:4820724-4820743 | None:intergenic | 50.0% | |
TTGTCCAAAGGATGGTCAGC+AGG | + | chr8_4:4820894-4820913 | Msa1308510:CDS | 50.0% | |
GAAATGTGACCTGCAAGGCA+TGG | - | chr8_4:4821200-4821219 | None:intergenic | 50.0% | |
TTCTCCGGCCAAAATTCGCA+TGG | + | chr8_4:4821275-4821294 | Msa1308510:CDS | 50.0% | |
TCTCCGGCCAAAATTCGCAT+GGG | + | chr8_4:4821276-4821295 | Msa1308510:CDS | 50.0% | |
TCGCATGGGTAACAAGGCAT+TGG | + | chr8_4:4821290-4821309 | Msa1308510:CDS | 50.0% | |
!! | GGTAACAAGGCATTGGTTCC+AGG | + | chr8_4:4821297-4821316 | Msa1308510:CDS | 50.0% |
GTGGCTCACAGCCCTAATTG+TGG | - | chr8_4:4821913-4821932 | None:intergenic | 55.0% | |
GTGGCTCACAGCCCTAATTG+TGG | - | chr8_4:4821913-4821932 | None:intergenic | 55.0% | |
AGTGCTGTCAATACGGCGGC+CGG | - | chr8_4:4821244-4821263 | None:intergenic | 60.0% | |
TCCTCCTGATCTTGGACCCC+CGG | + | chr8_4:4821484-4821503 | Msa1308510:CDS | 60.0% | |
TGTACCGGGGGTCCAAGATC+AGG | - | chr8_4:4821491-4821510 | None:intergenic | 60.0% | |
AGTGCTGTCAATACGGCGGC+CGG | - | chr8_4:4821244-4821263 | None:intergenic | 60.0% | |
TCCTCCTGATCTTGGACCCC+CGG | + | chr8_4:4821484-4821503 | Msa1308510:CDS | 60.0% | |
TGTACCGGGGGTCCAAGATC+AGG | - | chr8_4:4821491-4821510 | None:intergenic | 60.0% | |
ACCGGGGGTCCAAGATCAGG+AGG | - | chr8_4:4821488-4821507 | None:intergenic | 65.0% | |
ACCGGGGGTCCAAGATCAGG+AGG | - | chr8_4:4821488-4821507 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 4820234 | 4822289 | 4820234 | ID=Msa1308510;Name=Msa1308510 |
chr8_4 | mRNA | 4820234 | 4822289 | 4820234 | ID=Msa1308510-mRNA-1;Parent=Msa1308510;Name=Msa1308510-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|1|0.85|1|0.83|0.71|7|149|249 |
chr8_4 | exon | 4820234 | 4820352 | 4820234 | ID=Msa1308510-mRNA-1:exon:1458;Parent=Msa1308510-mRNA-1 |
chr8_4 | exon | 4820439 | 4820653 | 4820439 | ID=Msa1308510-mRNA-1:exon:1459;Parent=Msa1308510-mRNA-1 |
chr8_4 | exon | 4820806 | 4820915 | 4820806 | ID=Msa1308510-mRNA-1:exon:1460;Parent=Msa1308510-mRNA-1 |
chr8_4 | exon | 4821210 | 4821318 | 4821210 | ID=Msa1308510-mRNA-1:exon:1461;Parent=Msa1308510-mRNA-1 |
chr8_4 | exon | 4821429 | 4821505 | 4821429 | ID=Msa1308510-mRNA-1:exon:1462;Parent=Msa1308510-mRNA-1 |
chr8_4 | exon | 4821986 | 4822180 | 4821986 | ID=Msa1308510-mRNA-1:exon:1463;Parent=Msa1308510-mRNA-1 |
chr8_4 | exon | 4822216 | 4822289 | 4822216 | ID=Msa1308510-mRNA-1:exon:1464;Parent=Msa1308510-mRNA-1 |
chr8_4 | CDS | 4820234 | 4820352 | 4820234 | ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1 |
chr8_4 | CDS | 4820439 | 4820653 | 4820439 | ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1 |
chr8_4 | CDS | 4820806 | 4820915 | 4820806 | ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1 |
chr8_4 | CDS | 4821210 | 4821318 | 4821210 | ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1 |
chr8_4 | CDS | 4821429 | 4821505 | 4821429 | ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1 |
chr8_4 | CDS | 4821986 | 4822105 | 4821986 | ID=Msa1308510-mRNA-1:cds;Parent=Msa1308510-mRNA-1 |
chr8_4 | three_prime_UTR | 4822106 | 4822180 | 4822106 | ID=Msa1308510-mRNA-1:three_prime_utr;Parent=Msa1308510-mRNA-1 |
chr8_4 | three_prime_UTR | 4822216 | 4822289 | 4822216 | ID=Msa1308510-mRNA-1:three_prime_utr;Parent=Msa1308510-mRNA-1 |
Gene Sequence |
Protein sequence |