Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308690 | GAU20194.1 | 74.359 | 234 | 24 | 1 | 1 | 198 | 1 | 234 | 8.76e-114 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308690 | A0A1S3DVN0 | 70.000 | 250 | 23 | 1 | 1 | 198 | 1 | 250 | 1.23e-110 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0065010 | Msa1308690 | 0.802545 | 5.332107e-49 | -8.615850e-47 |
| Msa0431770 | Msa1308690 | 0.813420 | 2.582834e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308690 | MtrunA17_Chr8g0335281 | 69.323 | 251 | 25 | 1 | 1 | 199 | 1 | 251 | 2.18e-103 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1308690 | AT1G10095.4 | 42.972 | 249 | 75 | 3 | 1 | 198 | 1 | 233 | 5.42e-59 | 187 |
| Msa1308690 | AT1G10095.3 | 42.972 | 249 | 75 | 3 | 1 | 198 | 1 | 233 | 5.84e-59 | 187 |
| Msa1308690 | AT1G10095.2 | 42.972 | 249 | 75 | 3 | 1 | 198 | 1 | 233 | 6.33e-58 | 187 |
| Msa1308690 | AT1G10095.1 | 42.972 | 249 | 75 | 3 | 1 | 198 | 1 | 233 | 1.22e-57 | 187 |
Find 39 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAATTTCAAAGAGATTT+TGG | 0.053225 | 8_4:-4982770 | Msa1308690:CDS |
| ACTCCAAGCTTGTTCACTTT+TGG | 0.178561 | 8_4:+4983118 | None:intergenic |
| AAAGTATAGTTTCTCTTGTT+TGG | 0.245840 | 8_4:+4984042 | None:intergenic |
| TTGGAACAGAGATCATAAAT+TGG | 0.250447 | 8_4:-4984020 | Msa1308690:CDS |
| CTTCATTTAACAATGAAAAC+TGG | 0.261339 | 8_4:+4984143 | None:intergenic |
| GAACAGTAACACAATGGTTT+TGG | 0.279747 | 8_4:-4986598 | Msa1308690:five_prime_UTR |
| TAGAAATTCAGAATCGAAAT+TGG | 0.280241 | 8_4:+4986568 | None:intergenic |
| AATGAAGAGTCTAATTCTTA+TGG | 0.301067 | 8_4:-4985318 | Msa1308690:CDS |
| AACAAGAGAAACTATACTTT+TGG | 0.306893 | 8_4:-4984039 | Msa1308690:CDS |
| ACTTGTATGTATCACAATTC+TGG | 0.307553 | 8_4:-4982214 | Msa1308690:three_prime_UTR |
| TTCTGAAAGCTGATTCAAAA+AGG | 0.315689 | 8_4:-4986544 | Msa1308690:intron |
| CCTGTTTGCTGATTGATGTA+TGG | 0.355901 | 8_4:+4984087 | None:intergenic |
| CCATACATCAATCAGCAAAC+AGG | 0.396249 | 8_4:-4984087 | Msa1308690:CDS |
| GTGAACAAGCTTGGAGTCAT+AGG | 0.403674 | 8_4:-4983112 | Msa1308690:intron |
| TGGAACAGAGATCATAAATT+GGG | 0.406123 | 8_4:-4984019 | Msa1308690:CDS |
| ACTACAGTACATAATCGTTT+AGG | 0.410134 | 8_4:+4982117 | None:intergenic |
| GTGCTTGGAATCACCGTTGC+TGG | 0.420371 | 8_4:-4982302 | Msa1308690:CDS |
| AAATGAAGAAGCTGGCATTT+CGG | 0.429033 | 8_4:-4984128 | Msa1308690:CDS |
| CTCATACATGGCTAAAGAAC+AGG | 0.439250 | 8_4:-4982274 | Msa1308690:CDS |
| CAAAGATGAATTATCGTGCT+TGG | 0.454642 | 8_4:-4982317 | Msa1308690:CDS |
| TTTGGATCCAGTGATGAGCT+GGG | 0.471807 | 8_4:-4984181 | Msa1308690:intron |
| CACCCAAAAGTGAACAAGCT+TGG | 0.486777 | 8_4:-4983121 | Msa1308690:CDS |
| TAATTCTTATGGAAATGCTA+CGG | 0.511716 | 8_4:-4985307 | Msa1308690:CDS |
| TACGGGTCTCTTGCATCAGC+TGG | 0.514712 | 8_4:-4985289 | Msa1308690:CDS |
| TTCATTTAACAATGAAAACT+GGG | 0.520068 | 8_4:+4984144 | None:intergenic |
| TTTAACAATGAAAACTGGGA+TGG | 0.522744 | 8_4:+4984148 | None:intergenic |
| TTTCTGTGACTTATTGCTAG+TGG | 0.526062 | 8_4:+4982163 | None:intergenic |
| AATTCTTATGGAAATGCTAC+GGG | 0.531467 | 8_4:-4985306 | Msa1308690:CDS |
| ATTAGTGTCTAAGAAGAAGC+AGG | 0.548077 | 8_4:-4983195 | Msa1308690:CDS |
| TATTTAGCAGCTCTATATAA+CGG | 0.554608 | 8_4:+4983974 | None:intergenic |
| TCATTGTTAAATGAAGAAGC+TGG | 0.584284 | 8_4:-4984136 | Msa1308690:CDS |
| GGGGAAAGAATCGGAGCTTG+TGG | 0.589086 | 8_4:-4982749 | Msa1308690:CDS |
| TTGGATCCAGTGATGAGCTG+GGG | 0.598597 | 8_4:-4984180 | Msa1308690:intron |
| TGCTAAATATGCATTTATGA+CGG | 0.600195 | 8_4:-4983960 | Msa1308690:CDS |
| TTGCTGGCTAATCTCATACA+TGG | 0.606677 | 8_4:-4982286 | Msa1308690:CDS |
| CATACATCAATCAGCAAACA+GGG | 0.608183 | 8_4:-4984086 | Msa1308690:CDS |
| GGGTCTCTTGCATCAGCTGG+AGG | 0.626069 | 8_4:-4985286 | Msa1308690:CDS |
| TGTATGAGATTAGCCAGCAA+CGG | 0.659532 | 8_4:+4982289 | None:intergenic |
| TAGAACGAACAGTAACACAA+TGG | 0.720444 | 8_4:-4986604 | Msa1308690:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCTTAATAAAAAATTG+GGG | + | chr8_4:4983505-4983524 | None:intergenic | 10.0% |
| !! | CAAATTTCTTAATAAAAAAT+TGG | + | chr8_4:4983507-4983526 | None:intergenic | 10.0% |
| !!! | ATTTTTTATTAAGAAATTTG+TGG | - | chr8_4:4983507-4983526 | Msa1308690:intron | 10.0% |
| !!! | TTTTTTATTAAGAAATTTGT+GGG | - | chr8_4:4983508-4983527 | Msa1308690:intron | 10.0% |
| !!! | TGATTAATATATTTTTAAGA+TGG | - | chr8_4:4983795-4983814 | Msa1308690:intron | 10.0% |
| !! | ATATTTATTAAACGAAAAAT+TGG | + | chr8_4:4984318-4984337 | None:intergenic | 10.0% |
| !! | AAAACATAATATAAAGTTTA+AGG | + | chr8_4:4985241-4985260 | None:intergenic | 10.0% |
| !!! | TTAATATTTTCAATACAAAA+TGG | + | chr8_4:4986163-4986182 | None:intergenic | 10.0% |
| !!! | TTTTTATGTAATTCTTTGAT+CGG | - | chr8_4:4982527-4982546 | Msa1308690:intron | 15.0% |
| !! | ATGTAATATGTACATATTAT+AGG | - | chr8_4:4982977-4982996 | Msa1308690:intron | 15.0% |
| !! | TGTAATATGTACATATTATA+GGG | - | chr8_4:4982978-4982997 | Msa1308690:intron | 15.0% |
| !! | AAAAGAAAGAAAAAAAAGAA+TGG | + | chr8_4:4983309-4983328 | None:intergenic | 15.0% |
| !!! | ATATATTTTTAAGATGGAAA+TGG | - | chr8_4:4983801-4983820 | Msa1308690:intron | 15.0% |
| !! | CTAAAGAAAAATATATGTAA+TGG | + | chr8_4:4984062-4984081 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTTTGCTTTGT+TGG | - | chr8_4:4985127-4985146 | Msa1308690:intron | 15.0% |
| !! | ATTTGACAATAGAAAAATTA+GGG | + | chr8_4:4985701-4985720 | None:intergenic | 15.0% |
| !! | AATTTGACAATAGAAAAATT+AGG | + | chr8_4:4985702-4985721 | None:intergenic | 15.0% |
| !! | TTACTATTATATACTAACAT+TGG | - | chr8_4:4986083-4986102 | Msa1308690:intron | 15.0% |
| !! | TAAAAAAAGAACTTGTAGAT+AGG | - | chr8_4:4982853-4982872 | Msa1308690:intron | 20.0% |
| !! | AATATGTACATATTACATGA+GGG | + | chr8_4:4982975-4982994 | None:intergenic | 20.0% |
| !! | TAATATGTACATATTACATG+AGG | + | chr8_4:4982976-4982995 | None:intergenic | 20.0% |
| !!! | TAAAATTTTCCTGAAAATTC+TGG | - | chr8_4:4983117-4983136 | Msa1308690:CDS | 20.0% |
| !!! | GATTCTTTTATTGTTCTAAT+AGG | - | chr8_4:4983166-4983185 | Msa1308690:CDS | 20.0% |
| !! | AAGGAATCAATTTCTATAAA+GGG | + | chr8_4:4983286-4983305 | None:intergenic | 20.0% |
| !! | TTCATTTAACAATGAAAACT+GGG | + | chr8_4:4984557-4984576 | None:intergenic | 20.0% |
| !!! | AATCCAGAATATCTAAAATA+TGG | + | chr8_4:4985019-4985038 | None:intergenic | 20.0% |
| !!! | TGATTTTATGACTTCATATT+TGG | - | chr8_4:4985189-4985208 | Msa1308690:intron | 20.0% |
| !!! | AATGACATTCTAGAATTATA+AGG | - | chr8_4:4985391-4985410 | Msa1308690:intron | 20.0% |
| !!! | AATATTTATCCTTTTGTGAT+GGG | + | chr8_4:4985643-4985662 | None:intergenic | 20.0% |
| !!! | AAATATTTATCCTTTTGTGA+TGG | + | chr8_4:4985644-4985663 | None:intergenic | 20.0% |
| !!! | AAAGGATAAATATTTTTCAG+AGG | - | chr8_4:4985649-4985668 | Msa1308690:intron | 20.0% |
| !! | GTTCAAAATTTGAACATATA+TGG | + | chr8_4:4985679-4985698 | None:intergenic | 20.0% |
| !!! | TTCAAATTTCAAAGAGATTT+TGG | - | chr8_4:4985928-4985947 | Msa1308690:intron | 20.0% |
| !!! | TCAAATTTCAAAGAGATTTT+GGG | - | chr8_4:4985929-4985948 | Msa1308690:intron | 20.0% |
| !! | AGAATTGCATACTATTTAAT+TGG | - | chr8_4:4986001-4986020 | Msa1308690:intron | 20.0% |
| !!! | CATTTTTTCTTTAACATCTT+TGG | - | chr8_4:4986122-4986141 | Msa1308690:intron | 20.0% |
| !!! | TTTGATCTCTGAAAATTAAA+GGG | + | chr8_4:4986365-4986384 | None:intergenic | 20.0% |
| ! | TAGAAATTCAGAATCGAAAT+TGG | + | chr8_4:4982133-4982152 | None:intergenic | 25.0% |
| !!! | TATTTCGTAATGTTTGTTGT+GGG | - | chr8_4:4982198-4982217 | Msa1308690:three_prime_UTR | 25.0% |
| ! | CAATTTATCAAACAGGTAAT+GGG | + | chr8_4:4982275-4982294 | None:intergenic | 25.0% |
| ! | TTCAGACAAAAGTGAAAAAT+GGG | + | chr8_4:4982346-4982365 | None:intergenic | 25.0% |
| ! | ATTCAGACAAAAGTGAAAAA+TGG | + | chr8_4:4982347-4982366 | None:intergenic | 25.0% |
| ! | TATTGAAACTTATCATGTTG+TGG | - | chr8_4:4982403-4982422 | Msa1308690:intron | 25.0% |
| !! | ATTATTTTCCTAGTCATACA+AGG | + | chr8_4:4982490-4982509 | None:intergenic | 25.0% |
| ! | TAATTCTTTGATCGGAAAAT+GGG | - | chr8_4:4982535-4982554 | Msa1308690:intron | 25.0% |
| ! | GCTTATACATAAATGCTTAT+AGG | - | chr8_4:4982704-4982723 | Msa1308690:intron | 25.0% |
| !!! | CTACAAGTTCTTTTTTTAGA+AGG | + | chr8_4:4982851-4982870 | None:intergenic | 25.0% |
| ! | TATGCTATAAACGTTCAATT+AGG | - | chr8_4:4982880-4982899 | Msa1308690:intron | 25.0% |
| !! | AGATTTAAACCAGAATTTTC+AGG | + | chr8_4:4983129-4983148 | None:intergenic | 25.0% |
| ! | GAAGGAATCAATTTCTATAA+AGG | + | chr8_4:4983287-4983306 | None:intergenic | 25.0% |
| ! | GAAAGAAAAAAAAGAATGGA+AGG | + | chr8_4:4983305-4983324 | None:intergenic | 25.0% |
| !!! | TTCTTTTTGTTCTTTGAAGT+TGG | - | chr8_4:4983322-4983341 | Msa1308690:intron | 25.0% |
| !!! | GTTTTTACTGACTATACAAA+AGG | + | chr8_4:4983350-4983369 | None:intergenic | 25.0% |
| ! | AATGAAGAGTCTAATTCTTA+TGG | - | chr8_4:4983380-4983399 | Msa1308690:intron | 25.0% |
| ! | TAATTCTTATGGAAATGCTA+CGG | - | chr8_4:4983391-4983410 | Msa1308690:intron | 25.0% |
| !! | TAATGTAAGGTTTACTGATT+TGG | - | chr8_4:4983456-4983475 | Msa1308690:intron | 25.0% |
| ! | TTCATAAAAGTAGAATGGTA+AGG | + | chr8_4:4983879-4983898 | None:intergenic | 25.0% |
| ! | ACACTTTCATAAAAGTAGAA+TGG | + | chr8_4:4983884-4983903 | None:intergenic | 25.0% |
| !! | CAAATTTTGAGCAATTACTT+AGG | + | chr8_4:4983998-4984017 | None:intergenic | 25.0% |
| ! | CTAAGTAATTGCTCAAAATT+TGG | - | chr8_4:4983996-4984015 | Msa1308690:CDS | 25.0% |
| ! | TAATTGCTCAAAATTTGGAA+GGG | - | chr8_4:4984001-4984020 | Msa1308690:CDS | 25.0% |
| !! | ATATTGATTAACATGAACAC+AGG | + | chr8_4:4984113-4984132 | None:intergenic | 25.0% |
| ! | ATGTTAATCAATATACCTTG+TGG | - | chr8_4:4984119-4984138 | Msa1308690:CDS | 25.0% |
| ! | TAGAAGAAGCAACAAAAAAT+GGG | + | chr8_4:4984477-4984496 | None:intergenic | 25.0% |
| ! | TTAGAAGAAGCAACAAAAAA+TGG | + | chr8_4:4984478-4984497 | None:intergenic | 25.0% |
| ! | CTTCATTTAACAATGAAAAC+TGG | + | chr8_4:4984558-4984577 | None:intergenic | 25.0% |
| ! | AAAGTATAGTTTCTCTTGTT+TGG | + | chr8_4:4984659-4984678 | None:intergenic | 25.0% |
| !! | AACAAGAGAAACTATACTTT+TGG | - | chr8_4:4984659-4984678 | Msa1308690:intron | 25.0% |
| ! | TATTTAGCAGCTCTATATAA+CGG | + | chr8_4:4984727-4984746 | None:intergenic | 25.0% |
| ! | TGCTAAATATGCATTTATGA+CGG | - | chr8_4:4984738-4984757 | Msa1308690:intron | 25.0% |
| ! | TAAACAAAGTTCAATGTTGT+CGG | + | chr8_4:4984797-4984816 | None:intergenic | 25.0% |
| ! | GAAATATACATATTGAGGTA+CGG | + | chr8_4:4984995-4985014 | None:intergenic | 25.0% |
| ! | ATGGTGAAATATACATATTG+AGG | + | chr8_4:4985000-4985019 | None:intergenic | 25.0% |
| !!! | TCACCATATTTTAGATATTC+TGG | - | chr8_4:4985013-4985032 | Msa1308690:intron | 25.0% |
| !! | TGCATACAAGTATTTTATCT+AGG | - | chr8_4:4985873-4985892 | Msa1308690:intron | 25.0% |
| !! | CAAATTTCAAAGAGATTTTG+GGG | - | chr8_4:4985930-4985949 | Msa1308690:intron | 25.0% |
| !! | TTGATCTCTGAAAATTAAAG+GGG | + | chr8_4:4986364-4986383 | None:intergenic | 25.0% |
| !! | CTTTGATCTCTGAAAATTAA+AGG | + | chr8_4:4986366-4986385 | None:intergenic | 25.0% |
| ! | AACAGTAACACAATGGTTTT+GGG | - | chr8_4:4982101-4982120 | Msa1308690:three_prime_UTR | 30.0% |
| ! | TTCTGAAAGCTGATTCAAAA+AGG | - | chr8_4:4982154-4982173 | Msa1308690:three_prime_UTR | 30.0% |
| !! | AAAAAGGTATTTGTCTACAC+TGG | - | chr8_4:4982170-4982189 | Msa1308690:three_prime_UTR | 30.0% |
| ! | CTATTTCGTAATGTTTGTTG+TGG | - | chr8_4:4982197-4982216 | Msa1308690:three_prime_UTR | 30.0% |
| AACAAAAACTGAACACAGAT+CGG | + | chr8_4:4982243-4982262 | None:intergenic | 30.0% | |
| GCAATTTATCAAACAGGTAA+TGG | + | chr8_4:4982276-4982295 | None:intergenic | 30.0% | |
| GAATTGGCAATTTATCAAAC+AGG | + | chr8_4:4982282-4982301 | None:intergenic | 30.0% | |
| TAAATGATGATTTGAGCTTC+CGG | - | chr8_4:4982431-4982450 | Msa1308690:intron | 30.0% | |
| GTAATTCTTTGATCGGAAAA+TGG | - | chr8_4:4982534-4982553 | Msa1308690:intron | 30.0% | |
| AATTCTTTGATCGGAAAATG+GGG | - | chr8_4:4982536-4982555 | Msa1308690:intron | 30.0% | |
| GTTATTGAGTATAAGTAACG+TGG | - | chr8_4:4982735-4982754 | Msa1308690:CDS | 30.0% | |
| ACTAATCAAAGCATACAGAA+TGG | + | chr8_4:4982809-4982828 | None:intergenic | 30.0% | |
| TTCTGTATGCTTTGATTAGT+TGG | - | chr8_4:4982809-4982828 | Msa1308690:intron | 30.0% | |
| AAATAAACTCATGAGTAACG+AGG | + | chr8_4:4983056-4983075 | None:intergenic | 30.0% | |
| CTGGTTTAAATCTGTTATGT+AGG | - | chr8_4:4983136-4983155 | Msa1308690:CDS | 30.0% | |
| AATTCTTATGGAAATGCTAC+GGG | - | chr8_4:4983392-4983411 | Msa1308690:intron | 30.0% | |
| ATTCCATATCAACATAGTGT+GGG | - | chr8_4:4983570-4983589 | Msa1308690:intron | 30.0% | |
| GTAATTGCTCAAAATTTGGA+AGG | - | chr8_4:4984000-4984019 | Msa1308690:CDS | 30.0% | |
| ! | ATGTGTTGATGAACATGTTA+AGG | - | chr8_4:4984085-4984104 | Msa1308690:CDS | 30.0% |
| ! | TGTGTTGATGAACATGTTAA+GGG | - | chr8_4:4984086-4984105 | Msa1308690:CDS | 30.0% |
| CATGTTAAAGCAAGAAAAGA+AGG | + | chr8_4:4984145-4984164 | None:intergenic | 30.0% | |
| GTTGTTGAGAAATAATAACC+TGG | - | chr8_4:4984381-4984400 | Msa1308690:intron | 30.0% | |
| AAACGAATTGATTGCTAAGA+GGG | + | chr8_4:4984422-4984441 | None:intergenic | 30.0% | |
| TAAACGAATTGATTGCTAAG+AGG | + | chr8_4:4984423-4984442 | None:intergenic | 30.0% | |
| TCTTAGCAATCAATTCGTTT+AGG | - | chr8_4:4984422-4984441 | Msa1308690:intron | 30.0% | |
| ! | CACGTTTTCACTTATTCTTT+TGG | - | chr8_4:4984499-4984518 | Msa1308690:intron | 30.0% |
| TTTAACAATGAAAACTGGGA+TGG | + | chr8_4:4984553-4984572 | None:intergenic | 30.0% | |
| TCATTGTTAAATGAAGAAGC+TGG | - | chr8_4:4984562-4984581 | Msa1308690:intron | 30.0% | |
| TTGGAACAGAGATCATAAAT+TGG | - | chr8_4:4984678-4984697 | Msa1308690:intron | 30.0% | |
| TGGAACAGAGATCATAAATT+GGG | - | chr8_4:4984679-4984698 | Msa1308690:intron | 30.0% | |
| GCGTTTAAACAATACAAGAT+GGG | - | chr8_4:4984760-4984779 | Msa1308690:intron | 30.0% | |
| ! | TCAAAAGTATGCTTTCAAGA+TGG | + | chr8_4:4984840-4984859 | None:intergenic | 30.0% |
| GATAACAATTGAACGAGTTT+AGG | + | chr8_4:4984947-4984966 | None:intergenic | 30.0% | |
| ! | AATGATTATGTCTTTTCGTG+TGG | - | chr8_4:4985064-4985083 | Msa1308690:intron | 30.0% |
| !! | CATTAGTGTGATTTGTTTGT+AGG | - | chr8_4:4985161-4985180 | Msa1308690:intron | 30.0% |
| AGGCAAGAAAACATACAAAA+AGG | - | chr8_4:4985411-4985430 | Msa1308690:intron | 30.0% | |
| GGCAAGAAAACATACAAAAA+GGG | - | chr8_4:4985412-4985431 | Msa1308690:intron | 30.0% | |
| ! | TTTAATGCTGATTGATCCTA+AGG | - | chr8_4:4985724-4985743 | Msa1308690:intron | 30.0% |
| ! | AGTACTCTTCTGGAAAATAT+CGG | + | chr8_4:4985759-4985778 | None:intergenic | 30.0% |
| GAACATATATAGTACTCTTC+TGG | + | chr8_4:4985769-4985788 | None:intergenic | 30.0% | |
| !! | TTTAGTACTGATTGATCTGA+AGG | - | chr8_4:4985825-4985844 | Msa1308690:intron | 30.0% |
| ! | AAGTATTTTATCTAGGCGAT+GGG | - | chr8_4:4985880-4985899 | Msa1308690:intron | 30.0% |
| CTAATGCTCATTTAGTTGAT+TGG | - | chr8_4:4986033-4986052 | Msa1308690:intron | 30.0% | |
| !!! | ACAGAAGATGTCTTGTTTTT+TGG | + | chr8_4:4986231-4986250 | None:intergenic | 30.0% |
| ! | AATACTTCACCTTTTTGTCA+TGG | - | chr8_4:4986271-4986290 | Msa1308690:intron | 30.0% |
| GGGTAAAAACGATGAAAAAT+GGG | + | chr8_4:4986344-4986363 | None:intergenic | 30.0% | |
| ACTTGTATGTATCACAATTC+TGG | - | chr8_4:4986484-4986503 | Msa1308690:intron | 30.0% | |
| ACTACAGTACATAATCGTTT+AGG | + | chr8_4:4986584-4986603 | None:intergenic | 30.0% | |
| TAGAACGAACAGTAACACAA+TGG | - | chr8_4:4982094-4982113 | Msa1308690:three_prime_UTR | 35.0% | |
| ! | GAACAGTAACACAATGGTTT+TGG | - | chr8_4:4982100-4982119 | Msa1308690:three_prime_UTR | 35.0% |
| TATCCTACAGAAGGAAGAAT+TGG | + | chr8_4:4982298-4982317 | None:intergenic | 35.0% | |
| ACTTTACACTATCCTACAGA+AGG | + | chr8_4:4982307-4982326 | None:intergenic | 35.0% | |
| CTGTAGGATAGTGTAAAGTT+TGG | - | chr8_4:4982308-4982327 | Msa1308690:CDS | 35.0% | |
| AAATGATGATTTGAGCTTCC+GGG | - | chr8_4:4982432-4982451 | Msa1308690:intron | 35.0% | |
| ! | AAAATGGGGTTTGTTTGGAT+TGG | - | chr8_4:4982550-4982569 | Msa1308690:intron | 35.0% |
| TTGAGTTTATCTGCTAGCAT+AGG | - | chr8_4:4982578-4982597 | Msa1308690:intron | 35.0% | |
| TGAGTATAAGTAACGTGGTT+TGG | - | chr8_4:4982740-4982759 | Msa1308690:CDS | 35.0% | |
| ATTAGGCTGTTTATCCAAAC+AGG | - | chr8_4:4982897-4982916 | Msa1308690:intron | 35.0% | |
| TTAGGCTGTTTATCCAAACA+GGG | - | chr8_4:4982898-4982917 | Msa1308690:intron | 35.0% | |
| GTACATATTACATGAGGGTA+TGG | + | chr8_4:4982970-4982989 | None:intergenic | 35.0% | |
| ATTGTTCTAATAGGATGTGC+TGG | - | chr8_4:4983175-4983194 | Msa1308690:CDS | 35.0% | |
| AAGTCTGATGCTCTAATGTA+AGG | - | chr8_4:4983443-4983462 | Msa1308690:intron | 35.0% | |
| CATTCCATATCAACATAGTG+TGG | - | chr8_4:4983569-4983588 | Msa1308690:intron | 35.0% | |
| TTCCATATCAACATAGTGTG+GGG | - | chr8_4:4983571-4983590 | Msa1308690:intron | 35.0% | |
| GTAATATGTTGCTACACACA+TGG | - | chr8_4:4983631-4983650 | Msa1308690:intron | 35.0% | |
| TACACACATGGTATTCTCTT+AGG | - | chr8_4:4983643-4983662 | Msa1308690:intron | 35.0% | |
| ATATGTTGATCCAACACACT+TGG | + | chr8_4:4983948-4983967 | None:intergenic | 35.0% | |
| ! | CTCTAAGAAGTCTTAAGAGT+AGG | - | chr8_4:4984350-4984369 | Msa1308690:intron | 35.0% |
| AAATGAAGAAGCTGGCATTT+CGG | - | chr8_4:4984570-4984589 | Msa1308690:intron | 35.0% | |
| CATACATCAATCAGCAAACA+GGG | - | chr8_4:4984612-4984631 | Msa1308690:intron | 35.0% | |
| GGCGTTTAAACAATACAAGA+TGG | - | chr8_4:4984759-4984778 | Msa1308690:intron | 35.0% | |
| TATGCTTTCAAGATGGTCAT+GGG | + | chr8_4:4984833-4984852 | None:intergenic | 35.0% | |
| TGCTTCTTCAATCATTTGAC+AGG | - | chr8_4:4984910-4984929 | Msa1308690:intron | 35.0% | |
| AACAATTGAACGAGTTTAGG+AGG | + | chr8_4:4984944-4984963 | None:intergenic | 35.0% | |
| !! | TCTGGATTAGTTCGTAAAAG+CGG | - | chr8_4:4985031-4985050 | Msa1308690:intron | 35.0% |
| ATATGCACAAACAGGAAAAG+AGG | + | chr8_4:4985472-4985491 | None:intergenic | 35.0% | |
| TTTCTGCAATATGCACAAAC+AGG | + | chr8_4:4985480-4985499 | None:intergenic | 35.0% | |
| ATTAGTGTCTAAGAAGAAGC+AGG | - | chr8_4:4985503-4985522 | Msa1308690:intron | 35.0% | |
| ! | ATATCGGTGTTCAAAACCTT+AGG | + | chr8_4:4985743-4985762 | None:intergenic | 35.0% |
| ! | ACTGATTGATCTGAAGGTTT+TGG | - | chr8_4:4985831-4985850 | Msa1308690:intron | 35.0% |
| ! | CTGATTGATCTGAAGGTTTT+GGG | - | chr8_4:4985832-4985851 | Msa1308690:intron | 35.0% |
| !!! | GAAGGTTTTGGGACATTAAT+AGG | - | chr8_4:4985843-4985862 | Msa1308690:intron | 35.0% |
| ! | CAAGTATTTTATCTAGGCGA+TGG | - | chr8_4:4985879-4985898 | Msa1308690:intron | 35.0% |
| !! | AGAGATTTTGGGGAAAGAAT+CGG | - | chr8_4:4985940-4985959 | Msa1308690:intron | 35.0% |
| TCTGAACTGAATTTAGACCT+CGG | + | chr8_4:4985984-4986003 | None:intergenic | 35.0% | |
| GTAACAATTATCCTTCGCTT+GGG | + | chr8_4:4986067-4986086 | None:intergenic | 35.0% | |
| AGTAACAATTATCCTTCGCT+TGG | + | chr8_4:4986068-4986087 | None:intergenic | 35.0% | |
| ACAAAACGTTATCTCACTGA+AGG | - | chr8_4:4986190-4986209 | Msa1308690:intron | 35.0% | |
| CAAAACGTTATCTCACTGAA+GGG | - | chr8_4:4986191-4986210 | Msa1308690:intron | 35.0% | |
| ACTGAAGGGAAAAAGATAGA+GGG | - | chr8_4:4986205-4986224 | Msa1308690:intron | 35.0% | |
| ! | ACCTTTTTGTCATGGAGATT+AGG | - | chr8_4:4986279-4986298 | Msa1308690:intron | 35.0% |
| TCCTAATCTCCATGACAAAA+AGG | + | chr8_4:4986283-4986302 | None:intergenic | 35.0% | |
| ! | GTGTTTAGCTCAAAATATGC+TGG | + | chr8_4:4986322-4986341 | None:intergenic | 35.0% |
| GGGGTAAAAACGATGAAAAA+TGG | + | chr8_4:4986345-4986364 | None:intergenic | 35.0% | |
| CAAAGATGAATTATCGTGCT+TGG | - | chr8_4:4986381-4986400 | Msa1308690:intron | 35.0% | |
| TTTCTGTGACTTATTGCTAG+TGG | + | chr8_4:4986538-4986557 | None:intergenic | 35.0% | |
| TTGCCAATTCTTCCTTCTGT+AGG | - | chr8_4:4982292-4982311 | Msa1308690:CDS | 40.0% | |
| !! | TAGTCATACAAGGTACTGTC+AGG | + | chr8_4:4982480-4982499 | None:intergenic | 40.0% |
| TGACAGTACCTTGTATGACT+AGG | - | chr8_4:4982479-4982498 | Msa1308690:intron | 40.0% | |
| ! | ATCGGAAAATGGGGTTTGTT+TGG | - | chr8_4:4982545-4982564 | Msa1308690:intron | 40.0% |
| TAGGCAATTGTGAGGATGTT+TGG | - | chr8_4:4982597-4982616 | Msa1308690:intron | 40.0% | |
| AATGTTGACACACTTCCACA+TGG | - | chr8_4:4983017-4983036 | Msa1308690:intron | 40.0% | |
| GGTAAGTACATATCTCCATG+TGG | + | chr8_4:4983035-4983054 | None:intergenic | 40.0% | |
| ! | TTTGTGGGTTTTGCGACATT+TGG | - | chr8_4:4983523-4983542 | Msa1308690:intron | 40.0% |
| GCTCCGTTTAAGAGTTTCAA+GGG | - | chr8_4:4983665-4983684 | Msa1308690:intron | 40.0% | |
| CTCCGTTTAAGAGTTTCAAG+GGG | - | chr8_4:4983666-4983685 | Msa1308690:intron | 40.0% | |
| TCCGTTTAAGAGTTTCAAGG+GGG | - | chr8_4:4983667-4983686 | Msa1308690:intron | 40.0% | |
| TCCCCCTTGAAACTCTTAAA+CGG | + | chr8_4:4983671-4983690 | None:intergenic | 40.0% | |
| TCTGTTTGTGAGTCTAGAAG+GGG | + | chr8_4:4983855-4983874 | None:intergenic | 40.0% | |
| CTCTGTTTGTGAGTCTAGAA+GGG | + | chr8_4:4983856-4983875 | None:intergenic | 40.0% | |
| GTTAGAAATGCCAAGTGTGT+TGG | - | chr8_4:4983935-4983954 | Msa1308690:intron | 40.0% | |
| !! | CGTTTTGAGCAAATGTGCTA+AGG | - | chr8_4:4984036-4984055 | Msa1308690:CDS | 40.0% |
| ! | CCTGTTTGCTGATTGATGTA+TGG | + | chr8_4:4984614-4984633 | None:intergenic | 40.0% |
| CCATACATCAATCAGCAAAC+AGG | - | chr8_4:4984611-4984630 | Msa1308690:intron | 40.0% | |
| GTATGCTTTCAAGATGGTCA+TGG | + | chr8_4:4984834-4984853 | None:intergenic | 40.0% | |
| !! | CTCCAAGCTTGTTCACTTTT+GGG | + | chr8_4:4985582-4985601 | None:intergenic | 40.0% |
| !! | ACTCCAAGCTTGTTCACTTT+TGG | + | chr8_4:4985583-4985602 | None:intergenic | 40.0% |
| TATGTAGCAGTTTCCCCTTA+TGG | - | chr8_4:4985614-4985633 | Msa1308690:intron | 40.0% | |
| ! | TTTGTGATGGGAAGCCATAA+GGG | + | chr8_4:4985631-4985650 | None:intergenic | 40.0% |
| !! | TTTTGTGATGGGAAGCCATA+AGG | + | chr8_4:4985632-4985651 | None:intergenic | 40.0% |
| TTATGGCTTCCCATCACAAA+AGG | - | chr8_4:4985631-4985650 | Msa1308690:intron | 40.0% | |
| CACTGAAGGGAAAAAGATAG+AGG | - | chr8_4:4986204-4986223 | Msa1308690:intron | 40.0% | |
| ! | TGTATGAGATTAGCCAGCAA+CGG | + | chr8_4:4986412-4986431 | None:intergenic | 40.0% |
| ! | TTGCTGGCTAATCTCATACA+TGG | - | chr8_4:4986412-4986431 | Msa1308690:intron | 40.0% |
| CTCATACATGGCTAAAGAAC+AGG | - | chr8_4:4986424-4986443 | Msa1308690:intron | 40.0% | |
| TGCTAGCATAGGCAATTGTG+AGG | - | chr8_4:4982589-4982608 | Msa1308690:intron | 45.0% | |
| AAGCCAACTCCTTCACACTA+AGG | + | chr8_4:4982924-4982943 | None:intergenic | 45.0% | |
| GACCCCACACTATGTTGATA+TGG | + | chr8_4:4983576-4983595 | None:intergenic | 45.0% | |
| GGCTCCGTTTAAGAGTTTCA+AGG | - | chr8_4:4983664-4983683 | Msa1308690:intron | 45.0% | |
| TTTGTGAGTCTAGAAGGGGA+GGG | + | chr8_4:4983851-4983870 | None:intergenic | 45.0% | |
| GCTCTGTTTGTGAGTCTAGA+AGG | + | chr8_4:4983857-4983876 | None:intergenic | 45.0% | |
| AGCAAGAAAAGAAGGCCACA+AGG | + | chr8_4:4984137-4984156 | None:intergenic | 45.0% | |
| !! | GGGTGTTATTCTAACAGTCC+AGG | + | chr8_4:4984402-4984421 | None:intergenic | 45.0% |
| ! | TTTTGGATCCAGTGATGAGC+TGG | - | chr8_4:4984516-4984535 | Msa1308690:intron | 45.0% |
| TTTGGATCCAGTGATGAGCT+GGG | - | chr8_4:4984517-4984536 | Msa1308690:intron | 45.0% | |
| AATAAACCCCAGCTCATCAC+TGG | + | chr8_4:4984527-4984546 | None:intergenic | 45.0% | |
| !!! | GCATACTTTTGAGACACAGC+AGG | - | chr8_4:4984848-4984867 | Msa1308690:intron | 45.0% |
| ATTGAGGTACGGAAAGAGCT+AGG | + | chr8_4:4984984-4985003 | None:intergenic | 45.0% | |
| CACCCAAAAGTGAACAAGCT+TGG | - | chr8_4:4985577-4985596 | Msa1308690:intron | 45.0% | |
| GTGAACAAGCTTGGAGTCAT+AGG | - | chr8_4:4985586-4985605 | Msa1308690:intron | 45.0% | |
| ! | TTGTGATGGGAAGCCATAAG+GGG | + | chr8_4:4985630-4985649 | None:intergenic | 45.0% |
| GCTTGTGGAAAAAATAGCCG+AGG | - | chr8_4:4985964-4985983 | Msa1308690:intron | 45.0% | |
| ! | TGGTTTTCTTACCCAAGCGA+AGG | - | chr8_4:4986053-4986072 | Msa1308690:intron | 45.0% |
| !! | AAATTTCTTAATAAAAAATT+GGG | + | chr8_4:4983506-4983525 | None:intergenic | 5.0% |
| TTTGAGCTTCCGGGTCAACT+CGG | - | chr8_4:4982441-4982460 | Msa1308690:intron | 50.0% | |
| ! | TCATCAAGACCGAGTTGACC+CGG | + | chr8_4:4982453-4982472 | None:intergenic | 50.0% |
| CTTCACACTAAGGCCCTGTT+TGG | + | chr8_4:4982914-4982933 | None:intergenic | 50.0% | |
| CAAACAGGGCCTTAGTGTGA+AGG | - | chr8_4:4982912-4982931 | Msa1308690:intron | 50.0% | |
| TTCAAGGGGGAGAGAATGAG+AGG | - | chr8_4:4983680-4983699 | Msa1308690:intron | 50.0% | |
| TCAAGGGGGAGAGAATGAGA+GGG | - | chr8_4:4983681-4983700 | Msa1308690:intron | 50.0% | |
| GGAGAGAATGAGAGGGCTTT+GGG | - | chr8_4:4983688-4983707 | Msa1308690:intron | 50.0% | |
| TTGTGAGTCTAGAAGGGGAG+GGG | + | chr8_4:4983850-4983869 | None:intergenic | 50.0% | |
| GTTTGTGAGTCTAGAAGGGG+AGG | + | chr8_4:4983852-4983871 | None:intergenic | 50.0% | |
| TTGGATCCAGTGATGAGCTG+GGG | - | chr8_4:4984518-4984537 | Msa1308690:intron | 50.0% | |
| TGGTCATGGGATACTGAAGC+AGG | + | chr8_4:4984820-4984839 | None:intergenic | 50.0% | |
| GGGCCTTAGTGTGAAGGAGT+TGG | - | chr8_4:4982918-4982937 | Msa1308690:intron | 55.0% | |
| TACGGGTCTCTTGCATCAGC+TGG | - | chr8_4:4983409-4983428 | Msa1308690:intron | 55.0% | |
| GGGAGAGAATGAGAGGGCTT+TGG | - | chr8_4:4983687-4983706 | Msa1308690:intron | 55.0% | |
| !! | GAGAATGAGAGGGCTTTGGG+AGG | - | chr8_4:4983691-4983710 | Msa1308690:intron | 55.0% |
| !! | AATGAGAGGGCTTTGGGAGG+AGG | - | chr8_4:4983694-4983713 | Msa1308690:intron | 55.0% |
| !! | ATGAGAGGGCTTTGGGAGGA+GGG | - | chr8_4:4983695-4983714 | Msa1308690:intron | 55.0% |
| GGGGAAAGAATCGGAGCTTG+TGG | - | chr8_4:4985949-4985968 | Msa1308690:intron | 55.0% | |
| GTGCTTGGAATCACCGTTGC+TGG | - | chr8_4:4986396-4986415 | Msa1308690:intron | 55.0% | |
| GGGTCTCTTGCATCAGCTGG+AGG | - | chr8_4:4983412-4983431 | Msa1308690:intron | 60.0% | |
| ! | CTTTGGGAGGAGGGAAGGAG+AGG | - | chr8_4:4983704-4983723 | Msa1308690:intron | 60.0% |
| !! | GAGGGCTTTGGGAGGAGGGA+AGG | - | chr8_4:4983699-4983718 | Msa1308690:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 4982077 | 4986643 | 4982077 | ID=Msa1308690;Name=Msa1308690 |
| chr8_4 | mRNA | 4982077 | 4986643 | 4982077 | ID=Msa1308690-mRNA-1;Parent=Msa1308690;Name=Msa1308690-mRNA-1;_AED=0.24;_eAED=0.24;_QI=135|0.8|0.83|1|0.6|0.5|6|183|200 |
| chr8_4 | exon | 4982077 | 4982343 | 4982077 | ID=Msa1308690-mRNA-1:exon:1535;Parent=Msa1308690-mRNA-1 |
| chr8_4 | exon | 4982735 | 4982825 | 4982735 | ID=Msa1308690-mRNA-1:exon:1534;Parent=Msa1308690-mRNA-1 |
| chr8_4 | exon | 4983113 | 4983223 | 4983113 | ID=Msa1308690-mRNA-1:exon:1533;Parent=Msa1308690-mRNA-1 |
| chr8_4 | exon | 4983959 | 4984192 | 4983959 | ID=Msa1308690-mRNA-1:exon:1532;Parent=Msa1308690-mRNA-1 |
| chr8_4 | exon | 4985261 | 4985379 | 4985261 | ID=Msa1308690-mRNA-1:exon:1531;Parent=Msa1308690-mRNA-1 |
| chr8_4 | exon | 4986545 | 4986643 | 4986545 | ID=Msa1308690-mRNA-1:exon:1530;Parent=Msa1308690-mRNA-1 |
| chr8_4 | five_prime_UTR | 4986545 | 4986643 | 4986545 | ID=Msa1308690-mRNA-1:five_prime_utr;Parent=Msa1308690-mRNA-1 |
| chr8_4 | five_prime_UTR | 4985344 | 4985379 | 4985344 | ID=Msa1308690-mRNA-1:five_prime_utr;Parent=Msa1308690-mRNA-1 |
| chr8_4 | CDS | 4985261 | 4985343 | 4985261 | ID=Msa1308690-mRNA-1:cds;Parent=Msa1308690-mRNA-1 |
| chr8_4 | CDS | 4983959 | 4984192 | 4983959 | ID=Msa1308690-mRNA-1:cds;Parent=Msa1308690-mRNA-1 |
| chr8_4 | CDS | 4983113 | 4983223 | 4983113 | ID=Msa1308690-mRNA-1:cds;Parent=Msa1308690-mRNA-1 |
| chr8_4 | CDS | 4982735 | 4982825 | 4982735 | ID=Msa1308690-mRNA-1:cds;Parent=Msa1308690-mRNA-1 |
| chr8_4 | CDS | 4982260 | 4982343 | 4982260 | ID=Msa1308690-mRNA-1:cds;Parent=Msa1308690-mRNA-1 |
| chr8_4 | three_prime_UTR | 4982077 | 4982259 | 4982077 | ID=Msa1308690-mRNA-1:three_prime_utr;Parent=Msa1308690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
