Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309230 | A0A151TTU4 | 60.571 | 175 | 64 | 1 | 89 | 258 | 71 | 245 | 1.82e-65 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1309230 | Msa1317450 | 0.801762 | 7.725468e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309230 | MtrunA17_Chr8g0388951 | 62.238 | 143 | 54 | 0 | 111 | 253 | 518 | 660 | 9.13e-53 | 182 |
| Msa1309230 | MtrunA17_Chr8g0388961 | 57.639 | 144 | 61 | 0 | 111 | 254 | 526 | 669 | 5.73e-51 | 176 |
| Msa1309230 | MtrunA17_Chr3g0119891 | 37.423 | 163 | 101 | 1 | 96 | 258 | 618 | 779 | 1.26e-23 | 99.8 |
| Msa1309230 | MtrunA17_Chr5g0408081 | 34.641 | 153 | 99 | 1 | 105 | 257 | 637 | 788 | 6.55e-23 | 97.8 |
| Msa1309230 | MtrunA17_Chr1g0174881 | 46.575 | 73 | 39 | 0 | 186 | 258 | 12 | 84 | 8.36e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309230 | AT1G19260.1 | 35.152 | 165 | 106 | 1 | 96 | 260 | 604 | 767 | 1.23e-24 | 103 |
| Msa1309230 | AT3G29765.1 | 35.366 | 164 | 105 | 1 | 97 | 260 | 372 | 534 | 3.44e-24 | 101 |
| Msa1309230 | AT2G06541.2 | 31.098 | 164 | 111 | 2 | 97 | 260 | 401 | 562 | 7.49e-18 | 83.2 |
| Msa1309230 | AT2G06541.1 | 31.098 | 164 | 111 | 2 | 97 | 260 | 429 | 590 | 7.90e-18 | 83.2 |
| Msa1309230 | AT3G31402.2 | 32.143 | 140 | 89 | 3 | 96 | 231 | 158 | 295 | 1.63e-11 | 63.9 |
| Msa1309230 | AT3G31402.1 | 32.143 | 140 | 89 | 3 | 96 | 231 | 240 | 377 | 1.86e-11 | 63.9 |
| Msa1309230 | AT4G09660.1 | 35.345 | 116 | 74 | 1 | 96 | 211 | 548 | 662 | 2.35e-11 | 63.9 |
Find 62 sgRNAs with CRISPR-Local
Find 409 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGTTGTACATCGAAATT+TGG | 0.154931 | 8_4:-5721169 | Msa1309230:five_prime_UTR |
| TTGTATAAGGTGAGAATATT+AGG | 0.240971 | 8_4:-5722675 | None:intergenic |
| CCGCCTTATCTTAACTCTTC+CGG | 0.298096 | 8_4:-5714758 | Msa1309230:CDS |
| TTAACTCTAGATCTGCTAAC+AGG | 0.356844 | 8_4:-5721188 | Msa1309230:five_prime_UTR |
| TCCTGCTCACTAAAATCTAA+TGG | 0.359351 | 8_4:+5714931 | None:intergenic |
| AACAACACGGCGGTTTGTTC+TGG | 0.361287 | 8_4:-5715406 | Msa1309230:CDS |
| CTCTCTCACCTCTCAGGCTC+TGG | 0.393025 | 8_4:-5715375 | Msa1309230:CDS |
| TGACATCTTAGACTTTCATT+AGG | 0.399939 | 8_4:+5721121 | None:intergenic |
| AATGCTTTGTAATTATCCTT+AGG | 0.417081 | 8_4:+5714994 | None:intergenic |
| TGTGAAGCTCTCAATACAAC+AGG | 0.427309 | 8_4:-5714817 | Msa1309230:CDS |
| CTTGATGCTGTTAACCATCC+AGG | 0.440481 | 8_4:-5714871 | Msa1309230:CDS |
| TAAGATGTCATTCGTAGCTC+TGG | 0.443268 | 8_4:-5721108 | Msa1309230:exon |
| GATAACAGTGGCAACGTTAA+CGG | 0.452264 | 8_4:-5722471 | Msa1309230:five_prime_UTR |
| TCGTGGTGGATGAGAGGAGA+GGG | 0.454551 | 8_4:+5715502 | None:intergenic |
| TCGACATTGTTTGATTCCTA+AGG | 0.456847 | 8_4:-5715010 | Msa1309230:CDS |
| ACAAACCGCCGTGTTGTTGT+TGG | 0.458184 | 8_4:+5715411 | None:intergenic |
| TGTTACTTCTTTCTTTCATA+CGG | 0.460326 | 8_4:+5722607 | None:intergenic |
| AGGGTTGTACATCGAAATTT+GGG | 0.465358 | 8_4:-5721168 | Msa1309230:five_prime_UTR |
| ACGCTTCTCTCTCACCTCTC+AGG | 0.466385 | 8_4:-5715381 | Msa1309230:CDS |
| AACTGCAGTTTGATTCTCAC+AGG | 0.475311 | 8_4:-5715328 | Msa1309230:intron |
| GAAGGCGGATACACATTACT+TGG | 0.477441 | 8_4:-5714794 | Msa1309230:CDS |
| TCAACCTCACGCATCGCAAC+AGG | 0.485404 | 8_4:-5715434 | Msa1309230:CDS |
| GAGAGGTCGTGGTGGATGAG+AGG | 0.489362 | 8_4:+5715496 | None:intergenic |
| CCACGACCTCTCACTCTCTC+AGG | 0.493201 | 8_4:-5715485 | Msa1309230:CDS |
| CCGAAAGTGTCAAAAGCAAA+TGG | 0.495608 | 8_4:-5715679 | Msa1309230:intron |
| CCTGAGAGAGTGAGAGGTCG+TGG | 0.498445 | 8_4:+5715485 | None:intergenic |
| CCTCTCACTCTCTCAGGCTC+TGG | 0.500789 | 8_4:-5715479 | Msa1309230:CDS |
| TGTAGAAGGTCAACAACCTC+TGG | 0.508311 | 8_4:-5715712 | Msa1309230:intron |
| TCAGTAGTAGCTGTAGAAAC+CGG | 0.508670 | 8_4:+5714739 | None:intergenic |
| CTGGAGATAACAACTTCCTC+AGG | 0.516396 | 8_4:-5721089 | Msa1309230:intron |
| GTACATCGAAATTTGGGTGT+TGG | 0.527034 | 8_4:-5721162 | Msa1309230:five_prime_UTR |
| GACAAGATTGCGTAACAAGA+TGG | 0.536120 | 8_4:-5714686 | Msa1309230:CDS |
| GGTCAACAACCTCTGGTGCT+AGG | 0.539859 | 8_4:-5715705 | Msa1309230:CDS |
| CGTGGTGGATGAGAGGAGAG+GGG | 0.555909 | 8_4:+5715503 | None:intergenic |
| AGTTGAGAGGTGAGAGAGAG+AGG | 0.556979 | 8_4:+5715347 | None:intergenic |
| GTCGTGGTGGATGAGAGGAG+AGG | 0.562380 | 8_4:+5715501 | None:intergenic |
| ACAACTTATTCAAACCTGGA+TGG | 0.565575 | 8_4:+5714857 | None:intergenic |
| GATGGTTAACAGCATCAAGA+TGG | 0.574337 | 8_4:+5714875 | None:intergenic |
| CCAGAGCCTGAGAGAGTGAG+AGG | 0.588812 | 8_4:+5715479 | None:intergenic |
| GTTGACAACTTATTCAAACC+TGG | 0.596280 | 8_4:+5714853 | None:intergenic |
| AAACCGGAAGAGTTAAGATA+AGG | 0.598143 | 8_4:+5714755 | None:intergenic |
| GCAACAGGCCAACAACAACA+CGG | 0.600004 | 8_4:-5715419 | Msa1309230:CDS |
| GAAGGTGAATCAGACTTTGA+AGG | 0.602761 | 8_4:-5722400 | Msa1309230:five_prime_UTR |
| GAATCAGACTTTGAAGGAGG+AGG | 0.608052 | 8_4:-5722394 | Msa1309230:intron |
| TAACTCTAGATCTGCTAACA+GGG | 0.612398 | 8_4:-5721187 | Msa1309230:five_prime_UTR |
| TCTCATCACATTCACAGCCA+TGG | 0.618652 | 8_4:-5722651 | Msa1309230:five_prime_UTR |
| TGCTGTCGGATCTGATGCGA+AGG | 0.625322 | 8_4:-5722418 | Msa1309230:five_prime_UTR |
| TTTCGGTTTCCTAGCACCAG+AGG | 0.629860 | 8_4:+5715696 | None:intergenic |
| AGCTCTCAATACAACAGGGA+AGG | 0.632411 | 8_4:-5714812 | Msa1309230:CDS |
| GTGGTGGATGAGAGGAGAGG+GGG | 0.636210 | 8_4:+5715504 | None:intergenic |
| ACTATAAATACACATGACCA+TGG | 0.637801 | 8_4:+5722634 | None:intergenic |
| CCGGAAGAGTTAAGATAAGG+CGG | 0.639336 | 8_4:+5714758 | None:intergenic |
| TCTCAATACAACAGGGAAGG+CGG | 0.646765 | 8_4:-5714809 | Msa1309230:CDS |
| TTTGTTTCACAGGGAGACGA+CGG | 0.653429 | 8_4:-5722498 | Msa1309230:intron |
| GGTGAATCAGACTTTGAAGG+AGG | 0.660848 | 8_4:-5722397 | Msa1309230:five_prime_UTR |
| TTGGCCTGTTGCGATGCGTG+AGG | 0.662691 | 8_4:+5715430 | None:intergenic |
| AAGATTGCGTAACAAGATGG+AGG | 0.672623 | 8_4:-5714683 | Msa1309230:CDS |
| GAGAGAGTGAGAGGTCGTGG+TGG | 0.676922 | 8_4:+5715488 | None:intergenic |
| AGAATCAAACTGCAGTTGAG+AGG | 0.685676 | 8_4:+5715334 | None:intergenic |
| GTGAAGCTCTCAATACAACA+GGG | 0.730551 | 8_4:-5714816 | Msa1309230:CDS |
| GACGACGGTGACGATAACAG+TGG | 0.782105 | 8_4:-5722483 | Msa1309230:five_prime_UTR |
| ACAGGCCAACAACAACACGG+CGG | 0.838117 | 8_4:-5715416 | Msa1309230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+AGG | - | chr8_4:5715295-5715314 | Msa1309230:intron | 0.0% |
| !!! | TAATTTTTTTTTTTAAAAAA+AGG | + | chr8_4:5720501-5720520 | None:intergenic | 0.0% |
| !! | TAGATACTTATTTAAATATA+TGG | - | chr8_4:5715484-5715503 | Msa1309230:CDS | 10.0% |
| !! | AAAAATTGAATTAAAAATTG+GGG | + | chr8_4:5715577-5715596 | None:intergenic | 10.0% |
| !! | GAAAAATTGAATTAAAAATT+GGG | + | chr8_4:5715578-5715597 | None:intergenic | 10.0% |
| !! | AGAAAAATTGAATTAAAAAT+TGG | + | chr8_4:5715579-5715598 | None:intergenic | 10.0% |
| !!! | TCATATATTTTGATATTTAA+AGG | + | chr8_4:5716762-5716781 | None:intergenic | 10.0% |
| !!! | TTTTTATGAAACAAATATTT+TGG | + | chr8_4:5716867-5716886 | None:intergenic | 10.0% |
| !! | TATTTGTTTCATAAAAAAAA+AGG | - | chr8_4:5716870-5716889 | Msa1309230:intron | 10.0% |
| !! | TTGTTTCAAAAAAAAAAAAA+AGG | - | chr8_4:5716981-5717000 | Msa1309230:intron | 10.0% |
| !!! | TTTATCTCTAATTATAATTT+TGG | + | chr8_4:5717333-5717352 | None:intergenic | 10.0% |
| !! | AATAAAATAGTTCAAATAAA+GGG | + | chr8_4:5718135-5718154 | None:intergenic | 10.0% |
| !! | AAATAAAATAGTTCAAATAA+AGG | + | chr8_4:5718136-5718155 | None:intergenic | 10.0% |
| !! | TTATCAATATTATATATGAA+AGG | - | chr8_4:5718247-5718266 | Msa1309230:intron | 10.0% |
| !! | TATCAATATTATATATGAAA+GGG | - | chr8_4:5718248-5718267 | Msa1309230:intron | 10.0% |
| !! | GATAAATCTTAAAAAAATAT+TGG | + | chr8_4:5718862-5718881 | None:intergenic | 10.0% |
| !! | TAATAATTTATTATGTTTCA+CGG | + | chr8_4:5719730-5719749 | None:intergenic | 10.0% |
| !!! | TAATTTTATGTATATTTTGT+TGG | + | chr8_4:5719973-5719992 | None:intergenic | 10.0% |
| !! | AACAAAATATACATAAAATT+AGG | - | chr8_4:5719972-5719991 | Msa1309230:intron | 10.0% |
| !!! | ATAAAAATAGATTTTAAATC+AGG | - | chr8_4:5721301-5721320 | Msa1309230:intron | 10.0% |
| !!! | AAAAATTTATTTTTTTTCCA+GGG | + | chr8_4:5721635-5721654 | None:intergenic | 10.0% |
| !!! | AAAAAATTTATTTTTTTTCC+AGG | + | chr8_4:5721636-5721655 | None:intergenic | 10.0% |
| !!! | TAAATTTTTTTTTTGTATGT+AGG | - | chr8_4:5721646-5721665 | Msa1309230:intron | 10.0% |
| !! | ATAAAATTAGATAATCAACA+AGG | + | chr8_4:5715999-5716018 | None:intergenic | 15.0% |
| !! | AATAATAACAATCCAAAAAA+TGG | - | chr8_4:5716648-5716667 | Msa1309230:intron | 15.0% |
| !!! | AATTTTTTTCTTCCATTTTT+TGG | + | chr8_4:5716663-5716682 | None:intergenic | 15.0% |
| !! | TTTCAAAAAAAAAAAAAAGG+AGG | - | chr8_4:5716984-5717003 | Msa1309230:intron | 15.0% |
| !! | TTAATTAATAAATCAGGATT+CGG | - | chr8_4:5717064-5717083 | Msa1309230:intron | 15.0% |
| !! | CAAAATTATAAATAAGGATT+CGG | - | chr8_4:5717153-5717172 | Msa1309230:intron | 15.0% |
| !! | CAAAATTATAAATAAGGATT+CGG | - | chr8_4:5717153-5717172 | Msa1309230:intron | 15.0% |
| !! | TAAATATGAAATAGTTGTTT+CGG | - | chr8_4:5717349-5717368 | Msa1309230:intron | 15.0% |
| !!! | TTGATAAGACTATTTTAAAA+GGG | + | chr8_4:5717695-5717714 | None:intergenic | 15.0% |
| !!! | TTTGATAAGACTATTTTAAA+AGG | + | chr8_4:5717696-5717715 | None:intergenic | 15.0% |
| !! | AAATCATTTATTTGAACTTT+AGG | - | chr8_4:5718693-5718712 | Msa1309230:intron | 15.0% |
| !! | ATATTATATTATTAGTGCAA+TGG | + | chr8_4:5719526-5719545 | None:intergenic | 15.0% |
| !! | TAATATAATATGTAAACTTC+AGG | - | chr8_4:5719535-5719554 | Msa1309230:intron | 15.0% |
| !! | CATATTAAAATAAGAAATGA+AGG | + | chr8_4:5719687-5719706 | None:intergenic | 15.0% |
| !!! | TTTTAATATGACATTCATTT+AGG | - | chr8_4:5719697-5719716 | Msa1309230:intron | 15.0% |
| !! | AATAATTTATTATGTTTCAC+GGG | + | chr8_4:5719729-5719748 | None:intergenic | 15.0% |
| !! | AATTAGGTTATAATTATTGA+AGG | + | chr8_4:5719908-5719927 | None:intergenic | 15.0% |
| !! | TTTGTAAAAGACTAAAAATT+AGG | + | chr8_4:5719924-5719943 | None:intergenic | 15.0% |
| !! | AATACTTATAAAATTGCATT+TGG | - | chr8_4:5720452-5720471 | Msa1309230:intron | 15.0% |
| !!! | AAATTAGAATGAAAGTTTTT+AGG | - | chr8_4:5720515-5720534 | Msa1309230:intron | 15.0% |
| !! | AGTATATTTAAAAATTCAAC+TGG | - | chr8_4:5720739-5720758 | Msa1309230:intron | 15.0% |
| !! | GTATATTTAAAAATTCAACT+GGG | - | chr8_4:5720740-5720759 | Msa1309230:intron | 15.0% |
| !!! | GTTATTTTTCTTAAAATTGT+TGG | - | chr8_4:5720847-5720866 | Msa1309230:intron | 15.0% |
| !! | TTAAAATTGTTGGATAAATT+AGG | - | chr8_4:5720857-5720876 | Msa1309230:intron | 15.0% |
| !!! | AAAATTTATTTTTTTTCCAG+GGG | + | chr8_4:5721634-5721653 | None:intergenic | 15.0% |
| !! | TGTAAAACAAAATTATTTCA+GGG | + | chr8_4:5721687-5721706 | None:intergenic | 15.0% |
| !! | AAAAATTGGGGTAAATATTT+CGG | + | chr8_4:5715565-5715584 | None:intergenic | 20.0% |
| !! | AAATTTCAATCACATTGTAA+TGG | - | chr8_4:5715716-5715735 | Msa1309230:intron | 20.0% |
| !! | CAATTGAAAACAAAAAAAAG+AGG | - | chr8_4:5716433-5716452 | Msa1309230:intron | 20.0% |
| !!! | TTATTTTTATTGAGAGAAAC+AGG | - | chr8_4:5716820-5716839 | Msa1309230:intron | 20.0% |
| !! | GTTAGGTTAATTAATAAATC+AGG | - | chr8_4:5717058-5717077 | Msa1309230:intron | 20.0% |
| !!! | AATTTGTTTTGCTATAGTTT+TGG | + | chr8_4:5717094-5717113 | None:intergenic | 20.0% |
| !! | AACTATAGCAAAACAAATTT+CGG | - | chr8_4:5717095-5717114 | Msa1309230:intron | 20.0% |
| !!! | AGTGAATTGATAACAAATTT+CGG | - | chr8_4:5717123-5717142 | Msa1309230:intron | 20.0% |
| !! | TATGGCCAAAATTATAAATA+AGG | - | chr8_4:5717147-5717166 | Msa1309230:intron | 20.0% |
| !!! | CGAATCCTTATTTATAATTT+TGG | + | chr8_4:5717155-5717174 | None:intergenic | 20.0% |
| !!! | AATTTGTTTTGCTATAGTTT+TGG | + | chr8_4:5717094-5717113 | None:intergenic | 20.0% |
| !! | AACTATAGCAAAACAAATTT+AGG | - | chr8_4:5717095-5717114 | Msa1309230:intron | 20.0% |
| !!! | AGTGAATTGATAACAAATTT+TGG | - | chr8_4:5717123-5717142 | Msa1309230:intron | 20.0% |
| !!! | TTGATAACAAATTTTGGATA+TGG | - | chr8_4:5717218-5717237 | Msa1309230:intron | 20.0% |
| !! | TATGGCCAAAATTATAAATA+AGG | - | chr8_4:5717147-5717166 | Msa1309230:intron | 20.0% |
| !!! | CGAATCCTTATTTATAATTT+TGG | + | chr8_4:5717155-5717174 | None:intergenic | 20.0% |
| !!! | AATTTGTTTTGCTATAGTTT+TGG | + | chr8_4:5717094-5717113 | None:intergenic | 20.0% |
| !! | AACTATAGCAAAACAAATTT+CGG | - | chr8_4:5717095-5717114 | Msa1309230:intron | 20.0% |
| !!! | AGTGAATTGATAACAAATTT+CGG | - | chr8_4:5717123-5717142 | Msa1309230:intron | 20.0% |
| !! | TAAATACGAAATAGTTGTTT+CGG | - | chr8_4:5717385-5717404 | Msa1309230:intron | 20.0% |
| !! | GATAAATATAATATGAGCAA+TGG | - | chr8_4:5717419-5717438 | Msa1309230:intron | 20.0% |
| !! | CTATAACAAATTACAAAAAG+AGG | + | chr8_4:5718003-5718022 | None:intergenic | 20.0% |
| !!! | CTCTTTTTGTAATTTGTTAT+AGG | - | chr8_4:5718001-5718020 | Msa1309230:intron | 20.0% |
| !! | TATGCTTAAAATATATGAGT+TGG | - | chr8_4:5718083-5718102 | Msa1309230:intron | 20.0% |
| !! | ATGCTTAAAATATATGAGTT+GGG | - | chr8_4:5718084-5718103 | Msa1309230:intron | 20.0% |
| !! | ACTGTTATGAATAATAAAGT+TGG | - | chr8_4:5718318-5718337 | Msa1309230:intron | 20.0% |
| !! | CTTATTTGTATCCTATAAAT+AGG | - | chr8_4:5718432-5718451 | Msa1309230:intron | 20.0% |
| !! | GTTCAAATAAATGATTTGAA+AGG | + | chr8_4:5718690-5718709 | None:intergenic | 20.0% |
| !! | ACTTATATATAGTAATGTGT+TGG | - | chr8_4:5718989-5719008 | Msa1309230:intron | 20.0% |
| !!! | TGTCTTATAAACTCTATTTT+GGG | + | chr8_4:5719056-5719075 | None:intergenic | 20.0% |
| !!! | ATGTCTTATAAACTCTATTT+TGG | + | chr8_4:5719057-5719076 | None:intergenic | 20.0% |
| !! | AAAATAGAGTTTATAAGACA+TGG | - | chr8_4:5719056-5719075 | Msa1309230:intron | 20.0% |
| !! | TAACCAAACTATAGTTTATA+AGG | - | chr8_4:5719084-5719103 | Msa1309230:intron | 20.0% |
| !! | ATACCTTATAAACTATAGTT+TGG | + | chr8_4:5719090-5719109 | None:intergenic | 20.0% |
| !! | AAACTATAGTTTATAAGGTA+TGG | - | chr8_4:5719089-5719108 | Msa1309230:intron | 20.0% |
| !! | GTCAATTGATATTGAATAAT+TGG | + | chr8_4:5719195-5719214 | None:intergenic | 20.0% |
| !! | TAAAATAAGAAATGAAGGAT+AGG | + | chr8_4:5719682-5719701 | None:intergenic | 20.0% |
| !!! | ATGTATATTTTGTTGGATTT+TGG | + | chr8_4:5719966-5719985 | None:intergenic | 20.0% |
| !! | ATAAAATTAGGTTAAGTGAT+GGG | - | chr8_4:5719984-5720003 | Msa1309230:intron | 20.0% |
| !!! | TTGCAAAAAAATTGAGTTTT+TGG | - | chr8_4:5720029-5720048 | Msa1309230:intron | 20.0% |
| !!! | TGCAAAAAAATTGAGTTTTT+GGG | - | chr8_4:5720030-5720049 | Msa1309230:intron | 20.0% |
| !!! | AAAGTTTTTAGGTCAAAAAT+TGG | - | chr8_4:5720526-5720545 | Msa1309230:intron | 20.0% |
| !!! | AAGTTTTTAGGTCAAAAATT+GGG | - | chr8_4:5720527-5720546 | Msa1309230:intron | 20.0% |
| !! | CATAATTATTGTAATGGTAT+GGG | + | chr8_4:5720821-5720840 | None:intergenic | 20.0% |
| !! | ATGTTGCATAATTATTGTAA+TGG | + | chr8_4:5720827-5720846 | None:intergenic | 20.0% |
| !! | AATCTTACATTATGTTTAAG+CGG | - | chr8_4:5720910-5720929 | Msa1309230:intron | 20.0% |
| !!! | ATTTTATCTATAAGTTGAGT+TGG | + | chr8_4:5720983-5721002 | None:intergenic | 20.0% |
| !! | TTCTATTCAAGTGTAAATAA+TGG | + | chr8_4:5721377-5721396 | None:intergenic | 20.0% |
| !! | ATTATTTACACTTGAATAGA+AGG | - | chr8_4:5721376-5721395 | Msa1309230:intron | 20.0% |
| !! | GTAAAACAAAATTATTTCAG+GGG | + | chr8_4:5721686-5721705 | None:intergenic | 20.0% |
| !! | CTGTAAAACAAAATTATTTC+AGG | + | chr8_4:5721688-5721707 | None:intergenic | 20.0% |
| !! | AACCCTAGAAATAAAAAATT+GGG | - | chr8_4:5722085-5722104 | Msa1309230:intron | 20.0% |
| !!! | ATTCTATTTTTGTATGTAGT+TGG | - | chr8_4:5722182-5722201 | Msa1309230:intron | 20.0% |
| !!! | TTCTATTTTTGTATGTAGTT+GGG | - | chr8_4:5722183-5722202 | Msa1309230:intron | 20.0% |
| !! | TGTTACTTCTTTCTTTCATA+CGG | + | chr8_4:5714625-5714644 | None:intergenic | 25.0% |
| ! | CAATTATACTAAGAACACAA+AGG | + | chr8_4:5714655-5714674 | None:intergenic | 25.0% |
| ! | TAAATAAGAGAAGTAAGATG+GGG | + | chr8_4:5714870-5714889 | None:intergenic | 25.0% |
| ! | GTAAATAAGAGAAGTAAGAT+GGG | + | chr8_4:5714871-5714890 | None:intergenic | 25.0% |
| ! | AGTAAATAAGAGAAGTAAGA+TGG | + | chr8_4:5714872-5714891 | None:intergenic | 25.0% |
| !! | TATGTTATTTGTGTGAAAAC+CGG | - | chr8_4:5714900-5714919 | Msa1309230:CDS | 25.0% |
| !!! | CTCTACTATTTTAGAGATTA+TGG | + | chr8_4:5715057-5715076 | None:intergenic | 25.0% |
| ! | AATCTTAAGGTTTGAAGATA+AGG | + | chr8_4:5715081-5715100 | None:intergenic | 25.0% |
| ! | AGATAAACAAAGTCTGAATT+TGG | + | chr8_4:5715139-5715158 | None:intergenic | 25.0% |
| ! | TTTGTATGAAAAACGTTGTT+TGG | - | chr8_4:5715366-5715385 | Msa1309230:CDS | 25.0% |
| ! | AGACATAATAGTGAAAGAAA+AGG | - | chr8_4:5715752-5715771 | Msa1309230:intron | 25.0% |
| ! | GACATAATAGTGAAAGAAAA+GGG | - | chr8_4:5715753-5715772 | Msa1309230:intron | 25.0% |
| ! | TTAGTAACTTAAGGCAAATT+TGG | + | chr8_4:5715842-5715861 | None:intergenic | 25.0% |
| ! | CATGATCGAAATGAAAATAA+AGG | + | chr8_4:5715956-5715975 | None:intergenic | 25.0% |
| ! | ATCCTAGGCAAAATAAAAAT+GGG | + | chr8_4:5716022-5716041 | None:intergenic | 25.0% |
| ! | AATCCTAGGCAAAATAAAAA+TGG | + | chr8_4:5716023-5716042 | None:intergenic | 25.0% |
| !! | CTTTTTCTTCAAAAATCATC+TGG | - | chr8_4:5716168-5716187 | Msa1309230:intron | 25.0% |
| ! | AAAAAAAAGAGGAAGAAGTT+AGG | - | chr8_4:5716444-5716463 | Msa1309230:intron | 25.0% |
| ! | GATATTTAAAGGTTTGCAAT+TGG | + | chr8_4:5716751-5716770 | None:intergenic | 25.0% |
| ! | TTCATAAAAAAAAAGGCAAG+AGG | - | chr8_4:5716877-5716896 | Msa1309230:intron | 25.0% |
| !!! | TTTTGAAAGGGAAATTTGTT+AGG | - | chr8_4:5717041-5717060 | Msa1309230:intron | 25.0% |
| !! | TTGATAACAAATTTCGGATA+TGG | - | chr8_4:5717129-5717148 | Msa1309230:intron | 25.0% |
| ! | CAATAAAAAGTTACTACTCT+TGG | + | chr8_4:5717557-5717576 | None:intergenic | 25.0% |
| ! | GTTCAAATAAAGGGTAAAAT+AGG | + | chr8_4:5718126-5718145 | None:intergenic | 25.0% |
| ! | AATATTGATCCTATTGTAGT+GGG | + | chr8_4:5718229-5718248 | None:intergenic | 25.0% |
| ! | TAATATTGATCCTATTGTAG+TGG | + | chr8_4:5718230-5718249 | None:intergenic | 25.0% |
| ! | GTTATGAATAATAAAGTTGG+TGG | - | chr8_4:5718321-5718340 | Msa1309230:intron | 25.0% |
| ! | AACAAATGAGTCCTATTTAT+AGG | + | chr8_4:5718446-5718465 | None:intergenic | 25.0% |
| ! | TTGCAAATGAGTTATATTTG+AGG | - | chr8_4:5718641-5718660 | Msa1309230:intron | 25.0% |
| ! | TTATTATCTCCTCCTAATAT+TGG | - | chr8_4:5718733-5718752 | Msa1309230:intron | 25.0% |
| ! | TATTATCTCCTCCTAATATT+GGG | - | chr8_4:5718734-5718753 | Msa1309230:intron | 25.0% |
| !!! | TCTAATCTATCATTGGTTTA+AGG | + | chr8_4:5718965-5718984 | None:intergenic | 25.0% |
| ! | TTAAACCAATGATAGATTAG+AGG | - | chr8_4:5718964-5718983 | Msa1309230:intron | 25.0% |
| !! | TTTTTGCATCATAATAGATC+CGG | - | chr8_4:5719426-5719445 | Msa1309230:intron | 25.0% |
| ! | TAATATGACATTCATTTAGG+AGG | - | chr8_4:5719700-5719719 | Msa1309230:intron | 25.0% |
| ! | AATATGACATTCATTTAGGA+GGG | - | chr8_4:5719701-5719720 | Msa1309230:intron | 25.0% |
| ! | TAACAATATATTTGCTCTTC+TGG | - | chr8_4:5719803-5719822 | Msa1309230:intron | 25.0% |
| !!! | GACACTGTAAAAAGTATTAA+AGG | + | chr8_4:5719831-5719850 | None:intergenic | 25.0% |
| ! | CATAAAATTAGGTTAAGTGA+TGG | - | chr8_4:5719983-5720002 | Msa1309230:intron | 25.0% |
| ! | GCAATAGAAATGAAAAGAAT+TGG | - | chr8_4:5720291-5720310 | Msa1309230:intron | 25.0% |
| ! | CTTGTAAAACAAGTAACTAA+AGG | - | chr8_4:5720426-5720445 | Msa1309230:intron | 25.0% |
| !!! | AGTTTTTAGGTCAAAAATTG+GGG | - | chr8_4:5720528-5720547 | Msa1309230:intron | 25.0% |
| ! | TATTTACACGTGAGTATATT+AGG | + | chr8_4:5720599-5720618 | None:intergenic | 25.0% |
| ! | TAATATACTCACGTGTAAAT+AGG | - | chr8_4:5720598-5720617 | Msa1309230:intron | 25.0% |
| ! | GCATAATTATTGTAATGGTA+TGG | + | chr8_4:5720822-5720841 | None:intergenic | 25.0% |
| !!! | CTTTTAATTATCACATGTGA+TGG | - | chr8_4:5721050-5721069 | Msa1309230:intron | 25.0% |
| ! | GAACCCTAGAAATAAAAAAT+TGG | - | chr8_4:5722084-5722103 | Msa1309230:intron | 25.0% |
| ! | ACCCTAGAAATAAAAAATTG+GGG | - | chr8_4:5722086-5722105 | Msa1309230:intron | 25.0% |
| ! | TCAAACAACATAGAAAATCA+AGG | + | chr8_4:5722123-5722142 | None:intergenic | 25.0% |
| ! | AATGCTTTGTAATTATCCTT+AGG | + | chr8_4:5722238-5722257 | None:intergenic | 25.0% |
| ACTATAAATACACATGACCA+TGG | + | chr8_4:5714598-5714617 | None:intergenic | 30.0% | |
| !! | TTGGTGTTATTTGGATTGAT+AGG | - | chr8_4:5714967-5714986 | Msa1309230:CDS | 30.0% |
| AAATTGAATGCATGCAGTTA+TGG | - | chr8_4:5714990-5715009 | Msa1309230:CDS | 30.0% | |
| AATTGAATGCATGCAGTTAT+GGG | - | chr8_4:5714991-5715010 | Msa1309230:CDS | 30.0% | |
| !!! | ACCCTTTAAAACTCACTTTT+TGG | - | chr8_4:5715265-5715284 | Msa1309230:intron | 30.0% |
| !!! | GCCAAAAAGTGAGTTTTAAA+GGG | + | chr8_4:5715269-5715288 | None:intergenic | 30.0% |
| !! | AGCCAAAAAGTGAGTTTTAA+AGG | + | chr8_4:5715270-5715289 | None:intergenic | 30.0% |
| TACATGTGTGTATATATCTG+TGG | - | chr8_4:5715441-5715460 | Msa1309230:CDS | 30.0% | |
| ACTATTATGTCTCCATCATT+TGG | + | chr8_4:5715744-5715763 | None:intergenic | 30.0% | |
| !! | CTAGCTCTATTAGTAACTTA+AGG | + | chr8_4:5715851-5715870 | None:intergenic | 30.0% |
| ! | AGTCCTAGAATTTCAAGTAT+TGG | - | chr8_4:5715869-5715888 | Msa1309230:intron | 30.0% |
| CAACCAATACTTGAAATTCT+AGG | + | chr8_4:5715875-5715894 | None:intergenic | 30.0% | |
| !! | CTAGAATTTCAAGTATTGGT+TGG | - | chr8_4:5715873-5715892 | Msa1309230:intron | 30.0% |
| ! | TGGAATTGATAACTCAATGA+TGG | - | chr8_4:5715893-5715912 | Msa1309230:intron | 30.0% |
| !!! | ATCCCATTTTTATTTTGCCT+AGG | - | chr8_4:5716017-5716036 | Msa1309230:intron | 30.0% |
| TGACATCTTAGACTTTCATT+AGG | + | chr8_4:5716111-5716130 | None:intergenic | 30.0% | |
| CAATGGACAAAACATATTTG+AGG | - | chr8_4:5716307-5716326 | Msa1309230:intron | 30.0% | |
| TATTTGAGGATTACTACATC+AGG | - | chr8_4:5716321-5716340 | Msa1309230:intron | 30.0% | |
| TCTGTACTTCAATTGAAGTT+TGG | - | chr8_4:5716516-5716535 | Msa1309230:intron | 30.0% | |
| !!! | TTCTTTTCCATTGATTTGGT+AGG | + | chr8_4:5716585-5716604 | None:intergenic | 30.0% |
| !! | CATGTTCTTTTCCATTGATT+TGG | + | chr8_4:5716589-5716608 | None:intergenic | 30.0% |
| CAGAATTGAATCAAAGTTAC+CGG | - | chr8_4:5716683-5716702 | Msa1309230:intron | 30.0% | |
| TAAAAATAAACCCTAATCCG+TGG | + | chr8_4:5716809-5716828 | None:intergenic | 30.0% | |
| TTATTGAGAGAAACAGGTTT+AGG | - | chr8_4:5716826-5716845 | Msa1309230:intron | 30.0% | |
| TATTGAGAGAAACAGGTTTA+GGG | - | chr8_4:5716827-5716846 | Msa1309230:intron | 30.0% | |
| ! | GGATACGAATGAAATTTGTT+AGG | - | chr8_4:5717005-5717024 | Msa1309230:intron | 30.0% |
| TTAATAAATCAGGATTCGGA+TGG | - | chr8_4:5717068-5717087 | Msa1309230:intron | 30.0% | |
| ATTATAAATAAGGATTCGGC+TGG | - | chr8_4:5717157-5717176 | Msa1309230:intron | 30.0% | |
| AAAAGTGGAGGGAAAAAATT+AGG | - | chr8_4:5717486-5717505 | Msa1309230:intron | 30.0% | |
| GAGGGAAAAAATTAGGTTTA+GGG | - | chr8_4:5717493-5717512 | Msa1309230:intron | 30.0% | |
| CTAATGAGAGTTATAGAACT+TGG | + | chr8_4:5718365-5718384 | None:intergenic | 30.0% | |
| AGTTCTATAACTCTCATTAG+TGG | - | chr8_4:5718365-5718384 | Msa1309230:intron | 30.0% | |
| !! | TTAGTTTTCCCAATATTAGG+AGG | + | chr8_4:5718745-5718764 | None:intergenic | 30.0% |
| !!! | GGATTAGTTTTCCCAATATT+AGG | + | chr8_4:5718748-5718767 | None:intergenic | 30.0% |
| TCAACACAGTTAATGATAGA+TGG | - | chr8_4:5718809-5718828 | Msa1309230:intron | 30.0% | |
| AACACATTCAAAAATCCTCT+TGG | - | chr8_4:5718917-5718936 | Msa1309230:intron | 30.0% | |
| AACTTTAGACGTCTAAAGAA+TGG | - | chr8_4:5719137-5719156 | Msa1309230:intron | 30.0% | |
| GTAGCATATGCTCATAAAAA+TGG | + | chr8_4:5719173-5719192 | None:intergenic | 30.0% | |
| TTTACATTGTCAACTTTCTC+TGG | - | chr8_4:5719335-5719354 | Msa1309230:intron | 30.0% | |
| TTACATTGTCAACTTTCTCT+GGG | - | chr8_4:5719336-5719355 | Msa1309230:intron | 30.0% | |
| ! | TTTTGCATCATAATAGATCC+GGG | - | chr8_4:5719427-5719446 | Msa1309230:intron | 30.0% |
| AAATTTATCGTTGACAAGAC+CGG | + | chr8_4:5719462-5719481 | None:intergenic | 30.0% | |
| AGACAATATATTTGCTCTTC+TGG | - | chr8_4:5719880-5719899 | Msa1309230:intron | 30.0% | |
| !!! | ATTGAGTTTTTGGGACTTTT+TGG | - | chr8_4:5720039-5720058 | Msa1309230:intron | 30.0% |
| !! | ACTTTTTGGATGATTTTTGG+TGG | - | chr8_4:5720053-5720072 | Msa1309230:intron | 30.0% |
| AATCTAGATGCACAATTTGT+GGG | - | chr8_4:5720123-5720142 | Msa1309230:intron | 30.0% | |
| AGAGCAAAATTCATTGAGTT+AGG | - | chr8_4:5720786-5720805 | Msa1309230:intron | 30.0% | |
| GAGCAAAATTCATTGAGTTA+GGG | - | chr8_4:5720787-5720806 | Msa1309230:intron | 30.0% | |
| !! | AGAAGAAGTATCTGTTACAT+CGG | + | chr8_4:5721180-5721199 | None:intergenic | 30.0% |
| ATATCAATGTCATCTCTACT+AGG | + | chr8_4:5721477-5721496 | None:intergenic | 30.0% | |
| AGTGAAGGAATCAAAATCAA+AGG | + | chr8_4:5721982-5722001 | None:intergenic | 30.0% | |
| !!! | CCCCCAATTTTTTATTTCTA+GGG | + | chr8_4:5722090-5722109 | None:intergenic | 30.0% |
| CCCTAGAAATAAAAAATTGG+GGG | - | chr8_4:5722087-5722106 | Msa1309230:intron | 30.0% | |
| !!! | TCCCCCAATTTTTTATTTCT+AGG | + | chr8_4:5722091-5722110 | None:intergenic | 30.0% |
| !!! | TCACACAAGTTTTGTTTCAC+AGG | - | chr8_4:5714721-5714740 | Msa1309230:CDS | 35.0% |
| !!! | CACACAAGTTTTGTTTCACA+GGG | - | chr8_4:5714722-5714741 | Msa1309230:CDS | 35.0% |
| !!! | TGAACCTTTTTTGTTGCTGT+CGG | - | chr8_4:5714797-5714816 | Msa1309230:CDS | 35.0% |
| !! | TCTCTTGGTTTGGTGTTATT+TGG | - | chr8_4:5714958-5714977 | Msa1309230:CDS | 35.0% |
| GTGCTATCACAGATTCTATT+TGG | + | chr8_4:5715113-5715132 | None:intergenic | 35.0% | |
| !! | ACTCAGAAAACTCTAGTTCT+GGG | - | chr8_4:5715184-5715203 | Msa1309230:intron | 35.0% |
| GCAATGACTAAGATTGATCT+GGG | - | chr8_4:5715206-5715225 | Msa1309230:intron | 35.0% | |
| CAATGACTAAGATTGATCTG+GGG | - | chr8_4:5715207-5715226 | Msa1309230:intron | 35.0% | |
| AGGGTGTGATGTAGTTAAAA+GGG | + | chr8_4:5715250-5715269 | None:intergenic | 35.0% | |
| ! | AAGGGTGTGATGTAGTTAAA+AGG | + | chr8_4:5715251-5715270 | None:intergenic | 35.0% |
| ATTGTAATGGCACCAAATGA+TGG | - | chr8_4:5715729-5715748 | Msa1309230:intron | 35.0% | |
| GTGAAAGAAAAGGGCAATTA+AGG | - | chr8_4:5715762-5715781 | Msa1309230:intron | 35.0% | |
| ! | CATAGTTAGCAATTGGTTCA+TGG | + | chr8_4:5715928-5715947 | None:intergenic | 35.0% |
| CATGAACCAATTGCTAACTA+TGG | - | chr8_4:5715926-5715945 | Msa1309230:intron | 35.0% | |
| GGTTATCCATAGTTAGCAAT+TGG | + | chr8_4:5715935-5715954 | None:intergenic | 35.0% | |
| TTAACTCTAGATCTGCTAAC+AGG | - | chr8_4:5716041-5716060 | Msa1309230:intron | 35.0% | |
| TAACTCTAGATCTGCTAACA+GGG | - | chr8_4:5716042-5716061 | Msa1309230:intron | 35.0% | |
| AGGGTTGTACATCGAAATTT+GGG | - | chr8_4:5716061-5716080 | Msa1309230:intron | 35.0% | |
| TGAAGAAAAAGACATACCTG+AGG | + | chr8_4:5716159-5716178 | None:intergenic | 35.0% | |
| CATAAAACACAAACACGCAA+TGG | - | chr8_4:5716290-5716309 | Msa1309230:intron | 35.0% | |
| TTTCTACGCACTAAGAAGTT+AGG | - | chr8_4:5716352-5716371 | Msa1309230:intron | 35.0% | |
| AAAAGAGGAAGAAGTTAGGA+AGG | - | chr8_4:5716448-5716467 | Msa1309230:intron | 35.0% | |
| ! | TGAATCAAAGTTACCGGTTA+AGG | - | chr8_4:5716689-5716708 | Msa1309230:intron | 35.0% |
| GTTGTGTGTGAAATTTACCA+CGG | - | chr8_4:5716789-5716808 | Msa1309230:intron | 35.0% | |
| TGTGAAATTTACCACGGATT+AGG | - | chr8_4:5716795-5716814 | Msa1309230:intron | 35.0% | |
| ! | GTGAAATTTACCACGGATTA+GGG | - | chr8_4:5716796-5716815 | Msa1309230:intron | 35.0% |
| GAGCAATGGCTAAAATTGAA+TGG | - | chr8_4:5717433-5717452 | Msa1309230:intron | 35.0% | |
| GGAGGGAAAAAATTAGGTTT+AGG | - | chr8_4:5717492-5717511 | Msa1309230:intron | 35.0% | |
| !! | TAGGTTTAGGGTTAGCTTTA+CGG | - | chr8_4:5717505-5717524 | Msa1309230:intron | 35.0% |
| ATGAAAGGGATAGAGATTTC+AGG | - | chr8_4:5718262-5718281 | Msa1309230:intron | 35.0% | |
| AGAACTTGGAAGACTAAGAA+TGG | + | chr8_4:5718351-5718370 | None:intergenic | 35.0% | |
| CCAAATGATTGAATCTCAAC+TGG | + | chr8_4:5718588-5718607 | None:intergenic | 35.0% | |
| CCAGTTGAGATTCAATCATT+TGG | - | chr8_4:5718585-5718604 | Msa1309230:intron | 35.0% | |
| GTAGGCTGATTATCAATTGA+TGG | + | chr8_4:5718769-5718788 | None:intergenic | 35.0% | |
| CAACTTATTTACAGCTCAGT+AGG | + | chr8_4:5718787-5718806 | None:intergenic | 35.0% | |
| CTACTGAGCTGTAAATAAGT+TGG | - | chr8_4:5718785-5718804 | Msa1309230:intron | 35.0% | |
| CCTAATATTTCTCATCCAAG+AGG | + | chr8_4:5718935-5718954 | None:intergenic | 35.0% | |
| CCTCTTGGATGAGAAATATT+AGG | - | chr8_4:5718932-5718951 | Msa1309230:intron | 35.0% | |
| AGTCTCCTCTAATCTATCAT+TGG | + | chr8_4:5718972-5718991 | None:intergenic | 35.0% | |
| ACAAGTCTCTCACTTATCTA+AGG | + | chr8_4:5719312-5719331 | None:intergenic | 35.0% | |
| !! | GTTAAGTGATGGGTAAGAAA+GGG | - | chr8_4:5719994-5720013 | Msa1309230:intron | 35.0% |
| ! | GGGACTTTTTGGATGATTTT+TGG | - | chr8_4:5720050-5720069 | Msa1309230:intron | 35.0% |
| TGATGTGTTGGATAATGATG+AGG | - | chr8_4:5720083-5720102 | Msa1309230:intron | 35.0% | |
| GAATCTAGATGCACAATTTG+TGG | - | chr8_4:5720122-5720141 | Msa1309230:intron | 35.0% | |
| ATCTAGATGCACAATTTGTG+GGG | - | chr8_4:5720124-5720143 | Msa1309230:intron | 35.0% | |
| ATATTAGGATCGTTTCCACA+GGG | + | chr8_4:5720584-5720603 | None:intergenic | 35.0% | |
| TATATTAGGATCGTTTCCAC+AGG | + | chr8_4:5720585-5720604 | None:intergenic | 35.0% | |
| TTCATTGAGTTAGGGTTCTT+AGG | - | chr8_4:5720795-5720814 | Msa1309230:intron | 35.0% | |
| AAATTAAGCTCCGATCTTTC+TGG | - | chr8_4:5720999-5721018 | Msa1309230:intron | 35.0% | |
| ATTACTCCCAAACACAAAAG+AGG | + | chr8_4:5721081-5721100 | None:intergenic | 35.0% | |
| AAGCGATATAGTCATAATGC+AGG | + | chr8_4:5721140-5721159 | None:intergenic | 35.0% | |
| !! | GAAGAAGTATCTGTTACATC+GGG | + | chr8_4:5721179-5721198 | None:intergenic | 35.0% |
| !!! | ATTGGTTTTGCCATCCAAAA+AGG | + | chr8_4:5721430-5721449 | None:intergenic | 35.0% |
| CCTTCTACATAGAGTTCAAA+AGG | + | chr8_4:5721506-5721525 | None:intergenic | 35.0% | |
| ! | CCTTTTGAACTCTATGTAGA+AGG | - | chr8_4:5721503-5721522 | Msa1309230:intron | 35.0% |
| !! | CCATTTGCTTTTGACACTTT+CGG | + | chr8_4:5721553-5721572 | None:intergenic | 35.0% |
| ! | TATAAAAGCACGTTGAACAG+TGG | - | chr8_4:5721573-5721592 | Msa1309230:intron | 35.0% |
| ! | TTTTACAGTTGTGCCTCATT+TGG | - | chr8_4:5721700-5721719 | Msa1309230:intron | 35.0% |
| TTGTTCTCATCACTCATTCA+CGG | - | chr8_4:5721925-5721944 | Msa1309230:intron | 35.0% | |
| GAACAAACAAACTGAAGTGA+AGG | + | chr8_4:5721997-5722016 | None:intergenic | 35.0% | |
| TCGACATTGTTTGATTCCTA+AGG | - | chr8_4:5722219-5722238 | Msa1309230:intron | 35.0% | |
| !! | TCCATTAGATTTTAGTGAGC+AGG | - | chr8_4:5722297-5722316 | Msa1309230:intron | 35.0% |
| TCCTGCTCACTAAAATCTAA+TGG | + | chr8_4:5722301-5722320 | None:intergenic | 35.0% | |
| ACAACTTATTCAAACCTGGA+TGG | + | chr8_4:5722375-5722394 | None:intergenic | 35.0% | |
| GTTGACAACTTATTCAAACC+TGG | + | chr8_4:5722379-5722398 | None:intergenic | 35.0% | |
| AAACCGGAAGAGTTAAGATA+AGG | + | chr8_4:5722477-5722496 | None:intergenic | 35.0% | |
| GATAACAGTGGCAACGTTAA+CGG | - | chr8_4:5714758-5714777 | Msa1309230:CDS | 40.0% | |
| AGATCCGACAGCAACAAAAA+AGG | + | chr8_4:5714804-5714823 | None:intergenic | 40.0% | |
| GAAGGTGAATCAGACTTTGA+AGG | - | chr8_4:5714829-5714848 | Msa1309230:CDS | 40.0% | |
| AGAGAAGTAAGATGGGGAAT+TGG | + | chr8_4:5714864-5714883 | None:intergenic | 40.0% | |
| ! | TTGGCTAGCTAGGAATCTTA+AGG | + | chr8_4:5715094-5715113 | None:intergenic | 40.0% |
| ! | CAGATTCTATTTGGCTAGCT+AGG | + | chr8_4:5715104-5715123 | None:intergenic | 40.0% |
| GTGGCTCAAATATATGCTTC+AGG | + | chr8_4:5715166-5715185 | None:intergenic | 40.0% | |
| ! | CAGAACTAGAGTTTTCTGAG+TGG | + | chr8_4:5715185-5715204 | None:intergenic | 40.0% |
| ! | CACTCAGAAAACTCTAGTTC+TGG | - | chr8_4:5715183-5715202 | Msa1309230:intron | 40.0% |
| GGCAATGACTAAGATTGATC+TGG | - | chr8_4:5715205-5715224 | Msa1309230:intron | 40.0% | |
| GTGATGTAGTTAAAAGGGTG+TGG | + | chr8_4:5715245-5715264 | None:intergenic | 40.0% | |
| ! | GCAGATCTAGAGTTAATCCT+AGG | + | chr8_4:5716037-5716056 | None:intergenic | 40.0% |
| CAGGGTTGTACATCGAAATT+TGG | - | chr8_4:5716060-5716079 | Msa1309230:intron | 40.0% | |
| GTACATCGAAATTTGGGTGT+TGG | - | chr8_4:5716067-5716086 | Msa1309230:intron | 40.0% | |
| TAAGATGTCATTCGTAGCTC+TGG | - | chr8_4:5716121-5716140 | Msa1309230:intron | 40.0% | |
| ! | GCTTATGCAACATCTAAAGC+AGG | - | chr8_4:5716251-5716270 | Msa1309230:intron | 40.0% |
| AGTAACAGGATGAGTCATCA+AGG | - | chr8_4:5716558-5716577 | Msa1309230:intron | 40.0% | |
| TCAAGGACCTACCAAATCAA+TGG | - | chr8_4:5716575-5716594 | Msa1309230:intron | 40.0% | |
| GGTATGAGAGGAAAGTTGTA+AGG | - | chr8_4:5716715-5716734 | Msa1309230:intron | 40.0% | |
| GATCCAATGGCTTAGAAAAG+TGG | - | chr8_4:5717471-5717490 | Msa1309230:intron | 40.0% | |
| CAATGGCTTAGAAAAGTGGA+GGG | - | chr8_4:5717475-5717494 | Msa1309230:intron | 40.0% | |
| !! | AGGTTTAGGGTTAGCTTTAC+GGG | - | chr8_4:5717506-5717525 | Msa1309230:intron | 40.0% |
| AGAAAACGTCCCACTACAAT+AGG | - | chr8_4:5718217-5718236 | Msa1309230:intron | 40.0% | |
| GCACAAGATCAAAGAAGAAG+AGG | + | chr8_4:5718523-5718542 | None:intergenic | 40.0% | |
| !! | GGTTAAGTGATGGGTAAGAA+AGG | - | chr8_4:5719993-5720012 | Msa1309230:intron | 40.0% |
| ATGGGTAAGAAAGGGTAGTT+TGG | - | chr8_4:5720002-5720021 | Msa1309230:intron | 40.0% | |
| TGTGGGGAAAGAAATGAAGT+AGG | - | chr8_4:5720140-5720159 | Msa1309230:intron | 40.0% | |
| AAGATATATGCAACTCCCTG+TGG | - | chr8_4:5720566-5720585 | Msa1309230:intron | 40.0% | |
| TGACTTAAGTCATGCTCCAT+TGG | + | chr8_4:5720663-5720682 | None:intergenic | 40.0% | |
| ! | GCCAATCCTCTTTTGTGTTT+GGG | - | chr8_4:5721072-5721091 | Msa1309230:intron | 40.0% |
| TCCCAAACACAAAAGAGGAT+TGG | + | chr8_4:5721076-5721095 | None:intergenic | 40.0% | |
| CTGTTACATCGGGTTATCAA+AGG | + | chr8_4:5721169-5721188 | None:intergenic | 40.0% | |
| GTGCTTGAGAGAATAAGCTT+TGG | - | chr8_4:5721226-5721245 | Msa1309230:intron | 40.0% | |
| ACACTTGAATAGAAGGCAAG+CGG | - | chr8_4:5721383-5721402 | Msa1309230:intron | 40.0% | |
| AATGTTGTGTTCACGAGGAT+TGG | + | chr8_4:5721448-5721467 | None:intergenic | 40.0% | |
| CTATGAATGTTGTGTTCACG+AGG | + | chr8_4:5721453-5721472 | None:intergenic | 40.0% | |
| !! | CCGAAAGTGTCAAAAGCAAA+TGG | - | chr8_4:5721550-5721569 | Msa1309230:intron | 40.0% |
| AGAATCAAACTGCAGTTGAG+AGG | + | chr8_4:5721898-5721917 | None:intergenic | 40.0% | |
| AACTGCAGTTTGATTCTCAC+AGG | - | chr8_4:5721901-5721920 | Msa1309230:intron | 40.0% | |
| CGGCTTCTATGTTTCATTCA+CGG | - | chr8_4:5721945-5721964 | Msa1309230:intron | 40.0% | |
| GATGGTTAACAGCATCAAGA+TGG | + | chr8_4:5722357-5722376 | None:intergenic | 40.0% | |
| TGTGAAGCTCTCAATACAAC+AGG | - | chr8_4:5722412-5722431 | Msa1309230:five_prime_UTR | 40.0% | |
| GTGAAGCTCTCAATACAACA+GGG | - | chr8_4:5722413-5722432 | Msa1309230:five_prime_UTR | 40.0% | |
| TCAGTAGTAGCTGTAGAAAC+CGG | + | chr8_4:5722493-5722512 | None:intergenic | 40.0% | |
| GACAAGATTGCGTAACAAGA+TGG | - | chr8_4:5722543-5722562 | Msa1309230:intron | 40.0% | |
| AAGATTGCGTAACAAGATGG+AGG | - | chr8_4:5722546-5722565 | Msa1309230:intron | 40.0% | |
| TCTCATCACATTCACAGCCA+TGG | - | chr8_4:5714578-5714597 | Msa1309230:CDS | 45.0% | |
| TTTGTTTCACAGGGAGACGA+CGG | - | chr8_4:5714731-5714750 | Msa1309230:CDS | 45.0% | |
| ! | GGTGAATCAGACTTTGAAGG+AGG | - | chr8_4:5714832-5714851 | Msa1309230:CDS | 45.0% |
| ! | GAATCAGACTTTGAAGGAGG+AGG | - | chr8_4:5714835-5714854 | Msa1309230:CDS | 45.0% |
| ! | GGGAAAATCAAAGTGCTCAG+GGG | + | chr8_4:5714927-5714946 | None:intergenic | 45.0% |
| ! | CGGGAAAATCAAAGTGCTCA+GGG | + | chr8_4:5714928-5714947 | None:intergenic | 45.0% |
| AACCAAGAGATAGCAGAACG+CGG | + | chr8_4:5714948-5714967 | None:intergenic | 45.0% | |
| CGTTCTGCTATCTCTTGGTT+TGG | - | chr8_4:5714948-5714967 | Msa1309230:CDS | 45.0% | |
| TGACTAAGATTGATCTGGGG+AGG | - | chr8_4:5715210-5715229 | Msa1309230:intron | 45.0% | |
| GGCAATTAAGGCGATGATGT+TGG | - | chr8_4:5715774-5715793 | Msa1309230:intron | 45.0% | |
| CTGGAGATAACAACTTCCTC+AGG | - | chr8_4:5716140-5716159 | Msa1309230:intron | 45.0% | |
| GACTCATCCTGTTACTGAGA+TGG | + | chr8_4:5716554-5716573 | None:intergenic | 45.0% | |
| ! | CAAAGTTACCGGTTAAGGAG+TGG | - | chr8_4:5716694-5716713 | Msa1309230:intron | 45.0% |
| CTCTCATACCACTCCTTAAC+CGG | + | chr8_4:5716705-5716724 | None:intergenic | 45.0% | |
| CCATTGGATCTTGCGCATTT+AGG | + | chr8_4:5717461-5717480 | None:intergenic | 45.0% | |
| CCTAAATGCGCAAGATCCAA+TGG | - | chr8_4:5717458-5717477 | Msa1309230:intron | 45.0% | |
| !! | CCTCCACTTTTCTAAGCCAT+TGG | + | chr8_4:5717477-5717496 | None:intergenic | 45.0% |
| CCAATGGCTTAGAAAAGTGG+AGG | - | chr8_4:5717474-5717493 | Msa1309230:intron | 45.0% | |
| AATCTCAACTGGTCAGAGCA+TGG | + | chr8_4:5718577-5718596 | None:intergenic | 45.0% | |
| AGGAGGAGATAATAAGCAGC+TGG | + | chr8_4:5718728-5718747 | None:intergenic | 45.0% | |
| TATCGTTGACAAGACCGGTT+GGG | + | chr8_4:5719457-5719476 | None:intergenic | 45.0% | |
| TTATCGTTGACAAGACCGGT+TGG | + | chr8_4:5719458-5719477 | None:intergenic | 45.0% | |
| ATCTTACATCACTCGCGCAT+CGG | - | chr8_4:5720637-5720656 | Msa1309230:intron | 45.0% | |
| TTAAGTCACGCGGAGCTATA+AGG | - | chr8_4:5720675-5720694 | Msa1309230:intron | 45.0% | |
| TTAAGCTCCGATCTTTCTGG+TGG | - | chr8_4:5721002-5721021 | Msa1309230:intron | 45.0% | |
| TCTGCAACCACCAGAAAGAT+CGG | + | chr8_4:5721012-5721031 | None:intergenic | 45.0% | |
| ! | GGCCAATCCTCTTTTGTGTT+TGG | - | chr8_4:5721071-5721090 | Msa1309230:intron | 45.0% |
| CACTTGAATAGAAGGCAAGC+GGG | - | chr8_4:5721384-5721403 | Msa1309230:intron | 45.0% | |
| TGCCATCCAAAAAGGTCTAG+CGG | + | chr8_4:5721422-5721441 | None:intergenic | 45.0% | |
| TGTAGAAGGTCAACAACCTC+TGG | - | chr8_4:5721517-5721536 | Msa1309230:intron | 45.0% | |
| ! | AAAAGCACGTTGAACAGTGG+CGG | - | chr8_4:5721576-5721595 | Msa1309230:intron | 45.0% |
| GATCTCAGTTGAGACCCTTA+GGG | - | chr8_4:5721598-5721617 | Msa1309230:intron | 45.0% | |
| ATCTCAGTTGAGACCCTTAG+GGG | - | chr8_4:5721599-5721618 | Msa1309230:intron | 45.0% | |
| !!! | TTTTTTTCCAGGGGATACCG+TGG | + | chr8_4:5721625-5721644 | None:intergenic | 45.0% |
| CTTGATGCTGTTAACCATCC+AGG | - | chr8_4:5722358-5722377 | Msa1309230:intron | 45.0% | |
| AGCTCTCAATACAACAGGGA+AGG | - | chr8_4:5722417-5722436 | Msa1309230:five_prime_UTR | 45.0% | |
| TCTCAATACAACAGGGAAGG+CGG | - | chr8_4:5722420-5722439 | Msa1309230:five_prime_UTR | 45.0% | |
| GAAGGCGGATACACATTACT+TGG | - | chr8_4:5722435-5722454 | Msa1309230:five_prime_UTR | 45.0% | |
| CCGGAAGAGTTAAGATAAGG+CGG | + | chr8_4:5722474-5722493 | None:intergenic | 45.0% | |
| CCGCCTTATCTTAACTCTTC+CGG | - | chr8_4:5722471-5722490 | Msa1309230:five_prime_UTR | 45.0% | |
| !!! | TTAATTATTTTTTTTTTGAA+AGG | - | chr8_4:5717028-5717047 | Msa1309230:intron | 5.0% |
| !!! | TAATTATTTTTTTTTTGAAA+GGG | - | chr8_4:5717029-5717048 | Msa1309230:intron | 5.0% |
| !! | ATAAATCTTAAAAAAATATT+GGG | + | chr8_4:5718861-5718880 | None:intergenic | 5.0% |
| !! | TAAAATAATAATGAAAAAAT+TGG | - | chr8_4:5720238-5720257 | Msa1309230:intron | 5.0% |
| !! | TATATATATATATATAAAGT+AGG | + | chr8_4:5721349-5721368 | None:intergenic | 5.0% |
| ! | AATCAAAGTGCTCAGGGGAC+CGG | + | chr8_4:5714922-5714941 | None:intergenic | 50.0% |
| ! | GCGGGAAAATCAAAGTGCTC+AGG | + | chr8_4:5714929-5714948 | None:intergenic | 50.0% |
| ACCAAGAGATAGCAGAACGC+GGG | + | chr8_4:5714947-5714966 | None:intergenic | 50.0% | |
| GTCTCGTCCATCTCAGTAAC+AGG | - | chr8_4:5716544-5716563 | Msa1309230:intron | 50.0% | |
| CGGTTAAGGAGTGGTATGAG+AGG | - | chr8_4:5716703-5716722 | Msa1309230:intron | 50.0% | |
| TAGATCCGGGATAACCCAAC+CGG | - | chr8_4:5719440-5719459 | Msa1309230:intron | 50.0% | |
| ! | GGTGGTGAGTGATGATGTGT+TGG | - | chr8_4:5720071-5720090 | Msa1309230:intron | 50.0% |
| GGAGCATGACTTAAGTCACG+CGG | - | chr8_4:5720665-5720684 | Msa1309230:intron | 50.0% | |
| TGGGCGCAAGCAAAATGTGT+TGG | - | chr8_4:5720759-5720778 | Msa1309230:intron | 50.0% | |
| GGGCGCAAGCAAAATGTGTT+GGG | - | chr8_4:5720760-5720779 | Msa1309230:intron | 50.0% | |
| TTTCGGTTTCCTAGCACCAG+AGG | + | chr8_4:5721536-5721555 | None:intergenic | 50.0% | |
| GGATCTCAGTTGAGACCCTT+AGG | - | chr8_4:5721597-5721616 | Msa1309230:intron | 50.0% | |
| GCAACAGGCCAACAACAACA+CGG | - | chr8_4:5721810-5721829 | Msa1309230:intron | 50.0% | |
| ! | ACAAACCGCCGTGTTGTTGT+TGG | + | chr8_4:5721821-5721840 | None:intergenic | 50.0% |
| ! | AACAACACGGCGGTTTGTTC+TGG | - | chr8_4:5721823-5721842 | Msa1309230:intron | 50.0% |
| AGTTGAGAGGTGAGAGAGAG+AGG | + | chr8_4:5721885-5721904 | None:intergenic | 50.0% | |
| GACGACGGTGACGATAACAG+TGG | - | chr8_4:5714746-5714765 | Msa1309230:CDS | 55.0% | |
| TGCTGTCGGATCTGATGCGA+AGG | - | chr8_4:5714811-5714830 | Msa1309230:CDS | 55.0% | |
| TCCCGCGTTCTGCTATCTCT+TGG | - | chr8_4:5714943-5714962 | Msa1309230:CDS | 55.0% | |
| CAAGACCGGTTGGGTTATCC+CGG | + | chr8_4:5719448-5719467 | None:intergenic | 55.0% | |
| ! | CGCCGCTAGACCTTTTTGGA+TGG | - | chr8_4:5721417-5721436 | Msa1309230:intron | 55.0% |
| GGTCAACAACCTCTGGTGCT+AGG | - | chr8_4:5721524-5721543 | Msa1309230:intron | 55.0% | |
| !! | AGGAGAGGGGGTACCAAATG+AGG | + | chr8_4:5721716-5721735 | None:intergenic | 55.0% |
| !! | TCGTGGTGGATGAGAGGAGA+GGG | + | chr8_4:5721730-5721749 | None:intergenic | 55.0% |
| TCAACCTCACGCATCGCAAC+AGG | - | chr8_4:5721795-5721814 | Msa1309230:intron | 55.0% | |
| ACAGGCCAACAACAACACGG+CGG | - | chr8_4:5721813-5721832 | Msa1309230:intron | 55.0% | |
| ACGCTTCTCTCTCACCTCTC+AGG | - | chr8_4:5721848-5721867 | Msa1309230:intron | 55.0% | |
| ! | ATCACTCGCGCATCGGCCAA+TGG | - | chr8_4:5720644-5720663 | Msa1309230:intron | 60.0% |
| ! | GCTGCGCCGCTAGACCTTTT+TGG | - | chr8_4:5721413-5721432 | Msa1309230:intron | 60.0% |
| GTTGAGACCCTTAGGGGCCA+CGG | - | chr8_4:5721605-5721624 | Msa1309230:intron | 60.0% | |
| !! | GTGGTGGATGAGAGGAGAGG+GGG | + | chr8_4:5721728-5721747 | None:intergenic | 60.0% |
| !! | CGTGGTGGATGAGAGGAGAG+GGG | + | chr8_4:5721729-5721748 | None:intergenic | 60.0% |
| !! | GTCGTGGTGGATGAGAGGAG+AGG | + | chr8_4:5721731-5721750 | None:intergenic | 60.0% |
| !! | GAGAGGTCGTGGTGGATGAG+AGG | + | chr8_4:5721736-5721755 | None:intergenic | 60.0% |
| GAGAGAGTGAGAGGTCGTGG+TGG | + | chr8_4:5721744-5721763 | None:intergenic | 60.0% | |
| CCTGAGAGAGTGAGAGGTCG+TGG | + | chr8_4:5721747-5721766 | None:intergenic | 60.0% | |
| CCACGACCTCTCACTCTCTC+AGG | - | chr8_4:5721744-5721763 | Msa1309230:intron | 60.0% | |
| CCAGAGCCTGAGAGAGTGAG+AGG | + | chr8_4:5721753-5721772 | None:intergenic | 60.0% | |
| CCTCTCACTCTCTCAGGCTC+TGG | - | chr8_4:5721750-5721769 | Msa1309230:intron | 60.0% | |
| TTGGCCTGTTGCGATGCGTG+AGG | + | chr8_4:5721802-5721821 | None:intergenic | 60.0% | |
| CTCTCTCACCTCTCAGGCTC+TGG | - | chr8_4:5721854-5721873 | Msa1309230:intron | 60.0% | |
| GGGGATACCGTGGCCCCTAA+GGG | + | chr8_4:5721615-5721634 | None:intergenic | 65.0% | |
| AGGGGATACCGTGGCCCCTA+AGG | + | chr8_4:5721616-5721635 | None:intergenic | 65.0% | |
| TTAGGGGCCACGGTATCCCC+TGG | - | chr8_4:5721615-5721634 | Msa1309230:intron | 65.0% | |
| ! | AGGCGTCGCCAGAGCCTGAG+AGG | + | chr8_4:5721865-5721884 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 5714564 | 5722687 | 5714564 | ID=Msa1309230;Name=Msa1309230 |
| chr8_4 | mRNA | 5714564 | 5722687 | 5714564 | ID=Msa1309230-mRNA-1;Parent=Msa1309230;Name=Msa1309230-mRNA-1;_AED=0.36;_eAED=0.36;_QI=275|0.4|0.33|0.5|0.6|0.5|6|0|262 |
| chr8_4 | exon | 5714564 | 5715050 | 5714564 | ID=Msa1309230-mRNA-1:exon:1879;Parent=Msa1309230-mRNA-1 |
| chr8_4 | exon | 5715329 | 5715543 | 5715329 | ID=Msa1309230-mRNA-1:exon:1878;Parent=Msa1309230-mRNA-1 |
| chr8_4 | exon | 5715680 | 5715729 | 5715680 | ID=Msa1309230-mRNA-1:exon:1877;Parent=Msa1309230-mRNA-1 |
| chr8_4 | exon | 5721090 | 5721212 | 5721090 | ID=Msa1309230-mRNA-1:exon:1876;Parent=Msa1309230-mRNA-1 |
| chr8_4 | exon | 5722395 | 5722508 | 5722395 | ID=Msa1309230-mRNA-1:exon:1875;Parent=Msa1309230-mRNA-1 |
| chr8_4 | exon | 5722613 | 5722687 | 5722613 | ID=Msa1309230-mRNA-1:exon:1874;Parent=Msa1309230-mRNA-1 |
| chr8_4 | five_prime_UTR | 5722613 | 5722687 | 5722613 | ID=Msa1309230-mRNA-1:five_prime_utr;Parent=Msa1309230-mRNA-1 |
| chr8_4 | five_prime_UTR | 5722395 | 5722508 | 5722395 | ID=Msa1309230-mRNA-1:five_prime_utr;Parent=Msa1309230-mRNA-1 |
| chr8_4 | five_prime_UTR | 5721127 | 5721212 | 5721127 | ID=Msa1309230-mRNA-1:five_prime_utr;Parent=Msa1309230-mRNA-1 |
| chr8_4 | CDS | 5721090 | 5721126 | 5721090 | ID=Msa1309230-mRNA-1:cds;Parent=Msa1309230-mRNA-1 |
| chr8_4 | CDS | 5715680 | 5715729 | 5715680 | ID=Msa1309230-mRNA-1:cds;Parent=Msa1309230-mRNA-1 |
| chr8_4 | CDS | 5715329 | 5715543 | 5715329 | ID=Msa1309230-mRNA-1:cds;Parent=Msa1309230-mRNA-1 |
| chr8_4 | CDS | 5714564 | 5715050 | 5714564 | ID=Msa1309230-mRNA-1:cds;Parent=Msa1309230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
