AlfalfaGEDB | Msa1313760

M. sativa cultivar zhongmu-4 / Msa1313760

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1313760	sp\|Q9SPG3\|MYB26_ARATH	61.321	212	49	6	8	188	1	210	1.64e-75	239

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1313760	A0A072TNL5	86.607	336	28	4	4	330	43	370	0.0	580

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TFs/TRs:

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Gene ID	Type	Classification
Msa1313760	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1275580	Msa1313760	0.908467	1.656042e-81	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1313760	MtrunA17_Chr8g0342541	86.446	332	28	4	8	330	1	324	0.0	572
Msa1313760	MtrunA17_Chr8g0342521	84.639	332	33	4	8	330	1	323	0.0	555
Msa1313760	MtrunA17_Chr8g0342481	75.585	299	58	10	8	296	1	294	4.78e-144	412
Msa1313760	MtrunA17_Chr8g0342481	51.304	115	34	5	160	263	295	398	3.86e-18	84.7
Msa1313760	MtrunA17_Chr2g0330041	54.090	379	110	18	8	330	1	371	6.89e-105	312
Msa1313760	MtrunA17_Chr2g0309911	78.512	121	25	1	8	128	1	120	1.49e-67	214
Msa1313760	MtrunA17_Chr1g0193801	75.207	121	30	0	8	128	1	121	3.80e-67	215
Msa1313760	MtrunA17_Chr7g0270891	75.207	121	30	0	8	128	1	121	4.60e-67	214
Msa1313760	MtrunA17_Chr1g0193371	75.207	121	30	0	8	128	1	121	9.36e-67	214
Msa1313760	MtrunA17_Chr8g0387421	76.471	119	28	0	8	126	1	119	4.16e-66	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1313760	AT3G13890.2	64.039	203	49	5	8	188	1	201	8.07e-80	247
Msa1313760	AT3G13890.1	61.321	212	49	6	8	188	1	210	1.67e-76	239
Msa1313760	AT4G01680.3	67.857	140	38	1	8	140	1	140	1.63e-69	217
Msa1313760	AT4G01680.1	67.857	140	38	1	8	140	1	140	2.46e-68	217
Msa1313760	AT3G12720.1	74.803	127	31	1	2	128	6	131	7.11e-68	215
Msa1313760	AT1G63910.1	79.310	116	24	0	8	123	1	116	1.44e-67	216
Msa1313760	AT1G09540.1	69.504	141	36	1	8	141	1	141	2.42e-67	216
Msa1313760	AT5G26660.1	76.033	121	29	0	8	128	1	121	2.22e-66	213
Msa1313760	AT1G57560.1	75.207	121	30	0	8	128	1	121	4.77e-66	211
Msa1313760	AT1G57560.2	75.207	121	30	0	8	128	1	121	5.07e-66	209

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Find 55 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAGTGCTACACGTC+TGG	0.472206	8_4:-11921776	Msa1313760:CDS
AAACTTCCTCGTTTCAAATC+AGG	0.322148	8_4:+11923408	None:intergenic
AAATGTGGAAGCTAATCAAT+TGG	0.426350	8_4:-11921732	Msa1313760:CDS
AACAAACAGAAGGTTAAAAG+AGG	0.525426	8_4:-11923687	Msa1313760:CDS
AACTCTTTCCACATCTCTGC+AGG	0.469711	8_4:+11923460	None:intergenic
AATTGATTAGCTTCCACATT+TGG	0.313476	8_4:+11921734	None:intergenic
ACATTAGGGTTTGCATTTAA+AGG	0.226411	8_4:+11922220	None:intergenic
ACCTCATTATCTGTTCTTCC+AGG	0.316676	8_4:+11922367	None:intergenic
ACCTGGAAGAACAGATAATG+AGG	0.597599	8_4:-11922368	Msa1313760:CDS
ACCTTATCTCCAAATCAGCA+AGG	0.624710	8_4:-11922157	Msa1313760:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAGAAACAAGACATCAT+GGG	-	chr8_4:11921709-11921728	Msa1313760:CDS	30.0%
AACAAACAGAAGGTTAAAAG+AGG	-	chr8_4:11921748-11921767	Msa1313760:CDS	30.0%
AGAAGGTTAAAAGAGGATTA+TGG	-	chr8_4:11921755-11921774	Msa1313760:CDS	30.0%
TTATTAGCCCTAGATGTATA+GGG	+	chr8_4:11922421-11922440	None:intergenic	30.0%
TTGAACCAATATTATGGTAG+GGG	+	chr8_4:11923181-11923200	None:intergenic	30.0%
CATTGAACCAATATTATGGT+AGG	+	chr8_4:11923183-11923202	None:intergenic	30.0%
CATTAGGGTTTGCATTTAAA+GGG	+	chr8_4:11923217-11923236	None:intergenic	30.0%
ACATTAGGGTTTGCATTTAA+AGG	+	chr8_4:11923218-11923237	None:intergenic	30.0%
TGAAGTTGAGGATTACATTA+GGG	+	chr8_4:11923232-11923251	None:intergenic	30.0%
TTGAAGTTGAGGATTACATT+AGG	+	chr8_4:11923233-11923252	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	11921706	11923751	11921706	ID=Msa1313760;Name=Msa1313760
chr8_4	mRNA	11921706	11923751	11921706	ID=Msa1313760-mRNA-1;Parent=Msa1313760;Name=Msa1313760-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|1\|1\|1\|3\|0\|330
chr8_4	exon	11923598	11923751	11923598	ID=Msa1313760-mRNA-1:exon:4491;Parent=Msa1313760-mRNA-1
chr8_4	exon	11923354	11923483	11923354	ID=Msa1313760-mRNA-1:exon:4490;Parent=Msa1313760-mRNA-1
chr8_4	exon	11921706	11922414	11921706	ID=Msa1313760-mRNA-1:exon:4489;Parent=Msa1313760-mRNA-1
chr8_4	CDS	11923598	11923751	11923598	ID=Msa1313760-mRNA-1:cds;Parent=Msa1313760-mRNA-1
chr8_4	CDS	11923354	11923483	11923354	ID=Msa1313760-mRNA-1:cds;Parent=Msa1313760-mRNA-1
chr8_4	CDS	11921706	11922414	11921706	ID=Msa1313760-mRNA-1:cds;Parent=Msa1313760-mRNA-1

Gene Sequence

>Msa1313760

TTGCAAAAGAAACAAGACATCATGGGACATCACTCTTGTTGCAACAAACAGAAGGTTAAAAGAGGATTATGGTCACCTGAAGAAGATGAAAAACTCATCAAATATATTACAACATATGGACATGGTTGTTGGAGCTCTGTTCCAAAACATGCTGGCCTGCAGAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGAGGAAGTTTCTCTCATCAAGAAGCTGCACTCATTGTAGAACTACACAACATTCTAGGCAATAGATGGGCTCAGATTGCAAAACACTTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAACCATAAAGAAGAAAATCTTTTCTCATGATATTATTTCATCTTTCACCACATTTTCAGATAATCACACCCCCTACCATAATATTGGTTCAATGGAAAACTTCTTCCCTTTAAATGCAAACCCTAATGTAATCCTCAACTTCAATCATTATCACCATCAAGACCATTTAACCTTATCTCCAAATCAGCAAGGTAATTTTCAACAAATTGATACAAAGGTAAACATCAATGACCATTATAATGCCAATTTCCTTCACATTCAAAATCCAATACCACAAAATATAGTGCAACCAATATCTAATCCTTCTACTTATGAAGATACATGGTCATTAGACAGTGTAGCACTTCATCTCAATCCAGTAAATCAAGAAAATCAATTTTCAAAAAGTGACACGACCCCATTTAACAAATTAATGCAACAATATGATCAATATCATGATTTGGTCGAACTTGATGCTACTGTGCCTAAATTAGTCAATCATCAAAGCCTTGAGGATTATGCTTGTAGCATCCTAGATTCATCTAATTCCCAAGAACATGAAGCTCCTGCGAAAATTCAGTGCTACACGTCTGGTATTATTCATCCACAAGATCCAAATGTGGAAGCTAATCAATTGGATTACAATATTGATGCTCTAATGTGA

Protein sequence

>Msa1313760

LQKKQDIMGHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEAALIVELHNILGNRWAQIAKHLPGRTDNEVKNFWNSTIKKKIFSHDIISSFTTFSDNHTPYHNIGSMENFFPLNANPNVILNFNHYHHQDHLTLSPNQQGNFQQIDTKVNINDHYNANFLHIQNPIPQNIVQPISNPSTYEDTWSLDSVALHLNPVNQENQFSKSDTTPFNKLMQQYDQYHDLVELDATVPKLVNHQSLEDYACSILDSSNSQEHEAPAKIQCYTSGIIHPQDPNVEANQLDYNIDALM*