AlfalfaGEDB | Msa1316190

M. sativa cultivar zhongmu-4 / Msa1316190

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316190	XP_013444572.1	81.915	376	24	6	1	355	1	353	0.0	569

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316190	A0A072TMF0	81.915	376	24	6	1	355	1	353	0.0	569

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TFs/TRs:

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Gene ID	Type	Classification
Msa1316190	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1236230	Msa1316190	0.865188	7.076431e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316190	MtrunA17_Chr8g0346141	81.915	376	24	6	1	355	1	353	0.0	569
Msa1316190	MtrunA17_Chr3g0132851	68.750	352	79	6	1	335	1	338	3.51e-140	424

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1316190	AT1G09710.5	42.908	282	129	11	18	295	10	263	1.42e-55	191
Msa1316190	AT1G09710.3	42.908	282	129	11	18	295	10	263	1.42e-55	191
Msa1316190	AT1G09710.1	42.908	282	129	11	18	295	39	292	3.06e-55	191
Msa1316190	AT1G09710.4	42.908	282	129	11	18	295	39	292	3.06e-55	191
Msa1316190	AT1G09710.2	43.866	269	120	10	18	283	39	279	7.50e-55	190
Msa1316190	AT1G58220.2	40.203	296	141	10	18	309	37	300	5.09e-51	181
Msa1316190	AT1G58220.1	40.636	283	133	9	18	296	37	288	8.78e-51	181

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Find 110 sgRNAs with CRISPR-Local

Find 506 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGGTCAGAGGAAG+AGG	0.418034	8_4:-16067611	Msa1316190:CDS
AAACTATTGGGAGAGGGGTT+TGG	0.277241	8_4:+16064368	None:intergenic
AAAGACGGCAGTGCCAATTC+AGG	0.380490	8_4:-16065424	Msa1316190:CDS
AAATACTAGGGCATTTAATA+CGG	0.502194	8_4:-16064316	Msa1316190:three_prime_UTR
AACTATTGGGAGAGGGGTTT+GGG	0.216249	8_4:+16064369	None:intergenic
AAGGAGAAGGTAACCTTCTT+GGG	0.371846	8_4:+16070844	None:intergenic
AAGTGCAACAGAATTGTCTC+AGG	0.543345	8_4:-16067503	Msa1316190:intron
AATATGAAAACTATTGGGAG+AGG	0.532094	8_4:+16064361	None:intergenic
AATTGGGTAGCCATGGCAAA+AGG	0.538707	8_4:-16067547	Msa1316190:CDS
ACAAAGGCAGTACATGTAAA+AGG	0.238474	8_4:+16068629	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCAATCAAATTTGGTATCA+GGG	+	chr8_4:16064313-16064332	None:intergenic	30.0%
TTCCAATCAAATTTGGTATC+AGG	+	chr8_4:16064314-16064333	None:intergenic	30.0%
CCTTGAATAATTGATGTATC+CGG	-	chr8_4:16064518-16064537	Msa1316190:CDS	30.0%
TATCTGCTTCATAAACAAAC+CGG	+	chr8_4:16064540-16064559	None:intergenic	30.0%
AAAAACAAGTCAATCCAAAC+GGG	-	chr8_4:16064797-16064816	Msa1316190:intron	30.0%
CAGTCAAAATGAAGAAGAAA+GGG	+	chr8_4:16065234-16065253	None:intergenic	30.0%
ACAGTCAAAATGAAGAAGAA+AGG	+	chr8_4:16065235-16065254	None:intergenic	30.0%
TGTAGTAAGTAGTTCATACA+AGG	-	chr8_4:16066073-16066092	Msa1316190:intron	30.0%
TGCAAATTTCTTTCTGATTG+TGG	-	chr8_4:16066809-16066828	Msa1316190:intron	30.0%
GCAAATTTCTTTCTGATTGT+GGG	-	chr8_4:16066810-16066829	Msa1316190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	16064124	16070881	16064124	ID=Msa1316190;Name=Msa1316190
chr8_4	mRNA	16064124	16070881	16064124	ID=Msa1316190-mRNA-1;Parent=Msa1316190;Name=Msa1316190-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.5\|0.57\|0.85\|1\|1\|7\|342\|355
chr8_4	exon	16064124	16064638	16064124	ID=Msa1316190-mRNA-1:exon:6125;Parent=Msa1316190-mRNA-1
chr8_4	exon	16065296	16065467	16065296	ID=Msa1316190-mRNA-1:exon:6124;Parent=Msa1316190-mRNA-1
chr8_4	exon	16067504	16067896	16067504	ID=Msa1316190-mRNA-1:exon:6123;Parent=Msa1316190-mRNA-1
chr8_4	exon	16068384	16068470	16068384	ID=Msa1316190-mRNA-1:exon:6122;Parent=Msa1316190-mRNA-1
chr8_4	exon	16068585	16068661	16068585	ID=Msa1316190-mRNA-1:exon:6121;Parent=Msa1316190-mRNA-1
chr8_4	exon	16070595	16070709	16070595	ID=Msa1316190-mRNA-1:exon:6120;Parent=Msa1316190-mRNA-1
chr8_4	exon	16070831	16070881	16070831	ID=Msa1316190-mRNA-1:exon:6119;Parent=Msa1316190-mRNA-1
chr8_4	CDS	16070831	16070881	16070831	ID=Msa1316190-mRNA-1:cds;Parent=Msa1316190-mRNA-1
chr8_4	CDS	16070595	16070709	16070595	ID=Msa1316190-mRNA-1:cds;Parent=Msa1316190-mRNA-1
chr8_4	CDS	16068585	16068661	16068585	ID=Msa1316190-mRNA-1:cds;Parent=Msa1316190-mRNA-1
chr8_4	CDS	16068384	16068470	16068384	ID=Msa1316190-mRNA-1:cds;Parent=Msa1316190-mRNA-1
chr8_4	CDS	16067504	16067896	16067504	ID=Msa1316190-mRNA-1:cds;Parent=Msa1316190-mRNA-1
chr8_4	CDS	16065296	16065467	16065296	ID=Msa1316190-mRNA-1:cds;Parent=Msa1316190-mRNA-1
chr8_4	CDS	16064466	16064638	16064466	ID=Msa1316190-mRNA-1:cds;Parent=Msa1316190-mRNA-1
chr8_4	three_prime_UTR	16064124	16064465	16064124	ID=Msa1316190-mRNA-1:three_prime_utr;Parent=Msa1316190-mRNA-1

Gene Sequence

>Msa1316190

ATGCCAGAAAATAATCCCAAGAAGGTTACCTTCTCCTTCAATCACACAACGGAATTATCAAATTACCCTGATACCAAATTTGATTGGAATGAATTGGTGAACAAAACTTCTACTGGTATTTCTAATGCCAGAGAGTATCAGATGCTATGGCGCCGCTTGGCGTATGTCACAACCACCCTTTTACATGTACTGCCTTTGTTACTCTTCCAATTGCCATTTCCAGTTAGGTTTGCACAATCAGCTGATGATGATAGTGACCTAGATTGCGAGCTGGAATCATTTCCTTCCGTACATGTTGAAGCTACATCAGAGTCCTCAGCATGTGCGAAGGTGATAATTGCTTCCCGCACGCTAAGTGAATCTACCCCTAATAGCTCAACAATTGAGGCTCCAATGACTGTAAATTTTCCAGTTTACCGTTCATCTAGAACTTCAAAGGAAATTTCACAGCCCTCTAATTTGACGGAACAGACAAGCATTACGTTTCCAGTTACTGTTCAGAGACAGAAACTGCGAACTGTGTCAGCAACAGATGCTTTAGAAACCAAGAGAATAGTTGGTGGTACCAGTACCACAGCTTCCAAAAGGAAAAGAAAAGAATGGTCAGAGGAAGAGGACAATCAGCTACGGGCTGCTGTTCAGAGATGCGGTGAAGGGAATTGGGTAGCCATGGCAAAAGGAGACAGATTTCCTATTAAGAGAAGTGCAACAGAATTGTCTCAGAGGTGGAGCGCTTTACGAAAGAAAGACGGCAGTGCCAATTCAGGATCCACTGCGACCACTGTGACAACCAACACAGAATATACTGCTGAACAGTTGGCAACTCGTCACTCCCTAAATTTAGCCCTTGACAAGCCATTCAAAAAGTTTACTGCTCCTGGAATGACTGATCCCGGTAGGACCTCCACACCAATTAAAAATCAAGAGCACTCTCGTAGTACGACGCAAGTCTCCACAGTTTGTAGTTCGGTAGCACCTCAACGTCCGTCTCAACAAGCTTGTGGTCCCCTGCGAAACCGAAATTATCCTGTGAAGCATGCATCTCCACACATGGAGGCTAATTTTTAA

Protein sequence

>Msa1316190

MPENNPKKVTFSFNHTTELSNYPDTKFDWNELVNKTSTGISNAREYQMLWRRLAYVTTTLLHVLPLLLFQLPFPVRFAQSADDDSDLDCELESFPSVHVEATSESSACAKVIIASRTLSESTPNSSTIEAPMTVNFPVYRSSRTSKEISQPSNLTEQTSITFPVTVQRQKLRTVSATDALETKRIVGGTSTTASKRKRKEWSEEEDNQLRAAVQRCGEGNWVAMAKGDRFPIKRSATELSQRWSALRKKDGSANSGSTATTVTTNTEYTAEQLATRHSLNLALDKPFKKFTAPGMTDPGRTSTPIKNQEHSRSTTQVSTVCSSVAPQRPSQQACGPLRNRNYPVKHASPHMEANF*