AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1320700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320700 MtrunA17_Chr8g0351391 94.857 175 6 1 5 176 278 452 8.28e-119 347
Msa1320700 MtrunA17_Chr8g0351311 90.857 175 13 1 5 176 279 453 6.17e-116 340
Msa1320700 MtrunA17_Chr1g0204271 68.605 172 51 1 8 176 276 447 4.95e-86 263
Msa1320700 MtrunA17_Chr8g0351421 60.894 179 59 5 9 177 275 452 2.43e-66 213
Msa1320700 MtrunA17_Chr8g0351461 61.236 178 58 5 9 176 274 450 2.03e-65 210
Msa1320700 MtrunA17_Chr8g0351441 59.551 178 61 5 9 176 274 450 1.16e-64 208
Msa1320700 MtrunA17_Chr8g0351401 60.112 178 60 4 9 176 275 451 3.80e-64 207
Msa1320700 MtrunA17_Chr1g0204241 51.744 172 49 2 8 176 98 238 3.18e-58 186
Msa1320700 MtrunA17_Chr5g0403451 46.632 193 78 4 8 176 30 221 4.69e-54 174
Msa1320700 MtrunA17_Chr4g0067191 47.208 197 79 5 4 176 262 457 1.90e-53 179
Msa1320700 MtrunA17_Chr1g0164321 45.213 188 91 3 1 176 302 489 3.42e-48 166
Msa1320700 MtrunA17_Chr7g0260831 44.186 172 83 2 9 176 280 442 5.53e-48 164
Msa1320700 MtrunA17_Chr4g0038271 46.277 188 88 4 1 176 316 502 1.19e-47 164
Msa1320700 MtrunA17_Chr7g0255131 47.727 176 84 4 6 176 277 449 1.32e-47 163
Msa1320700 MtrunA17_Chr7g0260821 42.286 175 88 2 6 176 278 443 1.38e-47 163
Msa1320700 MtrunA17_Chr1g0178971 42.604 169 96 1 9 177 284 451 4.56e-47 162
Msa1320700 MtrunA17_Chr4g0026941 44.970 169 86 3 9 176 318 480 1.49e-46 161
Msa1320700 MtrunA17_Chr1g0184421 45.143 175 83 3 6 176 279 444 3.34e-43 152
Msa1320700 MtrunA17_Chr2g0321171 45.833 168 84 3 9 176 279 439 4.59e-43 151
Msa1320700 MtrunA17_Chr8g0387001 44.828 174 90 4 9 177 276 448 1.78e-42 150
Msa1320700 MtrunA17_Chr1g0184461 44.509 173 83 2 9 177 282 445 3.12e-42 149
Msa1320700 MtrunA17_Chr3g0119681 39.683 189 100 4 2 177 273 460 1.08e-41 148
Msa1320700 MtrunA17_Chr3g0104351 42.328 189 92 4 7 178 276 464 4.12e-41 146
Msa1320700 MtrunA17_Chr8g0348751 42.775 173 93 3 9 175 279 451 1.15e-40 145
Msa1320700 MtrunA17_Chr7g0225531 40.698 172 91 3 9 177 291 454 9.26e-40 142
Msa1320700 MtrunA17_Chr5g0429651 41.711 187 94 5 7 178 270 456 1.93e-39 142
Msa1320700 MtrunA17_Chr8g0380501 38.462 156 95 1 21 176 279 433 8.95e-36 131
Msa1320700 MtrunA17_Chr1g0163451 39.623 159 94 1 19 177 311 467 2.62e-35 130
Msa1320700 MtrunA17_Chr1g0163421 41.509 159 91 1 19 177 327 483 3.24e-35 130
Msa1320700 MtrunA17_Chr4g0004481 37.580 157 96 1 21 177 281 435 3.74e-35 130
Msa1320700 MtrunA17_Chr6g0449381 33.333 174 108 2 8 175 275 446 5.25e-35 129
Msa1320700 MtrunA17_Chr1g0171041 38.462 169 103 1 9 177 283 450 1.09e-34 129
Msa1320700 MtrunA17_Chr1g0183611 39.610 154 91 1 24 177 217 368 1.39e-34 127
Msa1320700 MtrunA17_Chr7g0227291 37.580 157 96 1 21 177 283 437 3.20e-34 127
Msa1320700 MtrunA17_Chr6g0449351 36.250 160 99 2 16 175 248 404 1.20e-33 125
Msa1320700 MtrunA17_Chr7g0227281 36.306 157 98 1 21 177 283 437 1.59e-33 125
Msa1320700 MtrunA17_Chr6g0449361 34.568 162 103 1 16 177 288 446 1.77e-33 125
Msa1320700 MtrunA17_Chr1g0163351 35.955 178 109 2 2 176 272 447 1.92e-33 125
Msa1320700 MtrunA17_Chr1g0163511 37.013 154 96 1 24 177 310 462 4.72e-33 124
Msa1320700 MtrunA17_Chr7g0214931 42.000 150 79 3 2 144 291 439 5.55e-33 123
Msa1320700 MtrunA17_Chr1g0163371 38.854 157 94 2 21 177 11 165 1.14e-32 118
Msa1320700 MtrunA17_Chr1g0163431 37.342 158 97 1 19 176 251 406 2.65e-32 121
Msa1320700 MtrunA17_Chr1g0184471 43.151 146 74 2 7 152 255 391 2.97e-32 120
Msa1320700 MtrunA17_Chr1g0163461 37.736 159 97 1 19 177 306 462 4.34e-32 122
Msa1320700 MtrunA17_Chr1g0163281 38.854 157 94 1 21 177 308 462 2.38e-31 120
Msa1320700 MtrunA17_Chr1g0163391 34.911 169 109 1 9 177 278 445 2.45e-31 119
Msa1320700 MtrunA17_Chr6g0449331 36.364 154 95 1 24 177 308 458 8.67e-31 118
Msa1320700 MtrunA17_Chr6g0449341 36.364 154 95 1 24 177 356 506 1.05e-30 118
Msa1320700 MtrunA17_Chr1g0163491 36.875 160 99 1 18 177 307 464 2.11e-30 117
Msa1320700 MtrunA17_Chr1g0163501 36.306 157 99 1 21 177 287 442 2.11e-30 117
Msa1320700 MtrunA17_Chr1g0163211 33.728 169 99 1 9 177 289 444 1.75e-29 114
Msa1320700 MtrunA17_Chr1g0163401 38.312 154 94 1 24 177 303 455 2.27e-29 114
Msa1320700 MtrunA17_Chr8g0357121 62.319 69 25 1 109 177 26 93 3.64e-24 93.6
Msa1320700 MtrunA17_Chr1g0164351 40.496 121 60 3 2 111 301 420 1.26e-22 95.1
Msa1320700 MtrunA17_Chr5g0430111 31.206 141 91 1 21 161 293 427 2.28e-21 91.7
Msa1320700 MtrunA17_Chr0c19g0493771 33.523 176 104 6 3 175 423 588 1.74e-20 89.4
Msa1320700 MtrunA17_Chr4g0058191 34.532 139 84 2 21 159 280 411 1.75e-20 89.4
Msa1320700 MtrunA17_Chr5g0430131 31.429 140 90 1 21 160 292 425 3.07e-20 88.6
Msa1320700 MtrunA17_Chr7g0248991 34.395 157 91 5 3 157 205 351 3.89e-20 87.4
Msa1320700 MtrunA17_Chr5g0430081 33.103 145 91 1 21 165 291 429 8.60e-20 87.4
Msa1320700 MtrunA17_Chr5g0396521 31.737 167 97 4 4 161 318 476 9.87e-20 87.4
Msa1320700 MtrunA17_Chr4g0056951 30.675 163 99 3 4 159 277 432 1.22e-19 87.0
Msa1320700 MtrunA17_Chr6g0484841 33.333 147 90 3 16 161 288 427 2.06e-19 86.3
Msa1320700 MtrunA17_Chr4g0058211 35.115 131 78 2 29 159 16 139 2.20e-19 83.2
Msa1320700 MtrunA17_Chr5g0403331 34.839 155 90 3 9 159 278 425 2.80e-19 85.9
Msa1320700 MtrunA17_Chr4g0058231 29.762 168 104 3 1 161 264 424 3.02e-19 85.9
Msa1320700 MtrunA17_Chr8g0390881 32.903 155 96 3 21 175 294 440 3.76e-19 85.5
Msa1320700 MtrunA17_Chr4g0058201 33.094 139 86 2 21 159 282 413 4.31e-19 85.1
Msa1320700 MtrunA17_Chr4g0030711 32.903 155 92 4 9 159 286 432 5.36e-19 85.1
Msa1320700 MtrunA17_Chr6g0472311 36.429 140 82 2 19 158 304 436 5.43e-19 85.1
Msa1320700 MtrunA17_Chr2g0309311 32.184 174 81 5 5 175 12 151 1.06e-18 80.5
Msa1320700 MtrunA17_Chr6g0451681 35.252 139 83 3 23 161 268 399 1.06e-18 84.0
Msa1320700 MtrunA17_Chr1g0174481 31.515 165 101 4 4 164 270 426 1.11e-18 84.0
Msa1320700 MtrunA17_Chr6g0451811 35.115 131 78 2 28 158 1 124 1.59e-18 80.5
Msa1320700 MtrunA17_Chr4g0047691 34.043 141 86 2 21 161 305 438 2.52e-18 83.2
Msa1320700 MtrunA17_Chr5g0446161 30.508 177 105 5 8 175 269 436 3.36e-18 82.8
Msa1320700 MtrunA17_Chr3g0116681 31.707 164 98 3 5 161 270 426 4.61e-18 82.4
Msa1320700 MtrunA17_Chr1g0207841 32.051 156 98 3 20 175 303 450 5.49e-18 82.0
Msa1320700 MtrunA17_Chr5g0403351 32.692 156 91 3 9 157 274 422 6.59e-18 82.0
Msa1320700 MtrunA17_Chr8g0390871 30.323 155 100 3 21 175 16 162 6.74e-18 79.3
Msa1320700 MtrunA17_Chr1g0179811 32.386 176 107 5 3 175 314 480 7.41e-18 81.6
Msa1320700 MtrunA17_Chr7g0215181 30.460 174 108 4 4 172 287 452 8.04e-18 81.6
Msa1320700 MtrunA17_Chr4g0046681 35.385 130 77 2 32 161 31 153 1.23e-17 79.0
Msa1320700 MtrunA17_Chr5g0430071 30.137 146 94 2 21 165 146 284 1.26e-17 80.5
Msa1320700 MtrunA17_Chr5g0446151 29.775 178 106 5 8 175 269 437 1.91e-17 80.5
Msa1320700 MtrunA17_Chr6g0458561 32.934 167 98 4 9 168 298 457 2.58e-17 80.1
Msa1320700 MtrunA17_Chr7g0255531 31.737 167 100 4 2 161 260 419 3.42e-17 79.7
Msa1320700 MtrunA17_Chr5g0431511 29.375 160 99 3 9 161 273 425 3.89e-17 79.7
Msa1320700 MtrunA17_Chr4g0047641 31.515 165 99 3 4 161 282 439 4.07e-17 79.7
Msa1320700 MtrunA17_Chr4g0030701 32.903 155 92 4 9 159 283 429 6.84e-17 79.0
Msa1320700 MtrunA17_Chr1g0156101 31.847 157 93 4 9 158 282 431 7.29e-17 79.0
Msa1320700 MtrunA17_Chr5g0430101 31.206 141 89 3 21 160 290 423 7.59e-17 79.0
Msa1320700 MtrunA17_Chr5g0430031 29.167 168 107 4 21 183 293 453 9.95e-17 78.6
Msa1320700 MtrunA17_Chr4g0057001 30.435 161 98 3 6 159 284 437 1.07e-16 78.2
Msa1320700 MtrunA17_Chr2g0314721 30.899 178 102 6 7 175 279 444 1.26e-16 78.2
Msa1320700 MtrunA17_Chr4g0011961 29.586 169 102 5 1 159 255 416 1.46e-16 77.8
Msa1320700 MtrunA17_Chr6g0457421 31.447 159 99 3 8 166 294 442 1.66e-16 77.8
Msa1320700 MtrunA17_Chr6g0484811 30.070 143 94 1 19 161 292 428 1.93e-16 77.8
Msa1320700 MtrunA17_Chr1g0174471 28.249 177 111 5 9 177 293 461 2.05e-16 77.4
Msa1320700 MtrunA17_Chr8g0372251 32.026 153 96 3 25 177 299 443 2.62e-16 77.4
Msa1320700 MtrunA17_Chr2g0280041 31.156 199 124 5 32 219 332 528 2.90e-16 77.0
Msa1320700 MtrunA17_Chr6g0451691 33.333 159 95 5 4 158 296 447 3.81e-16 76.6
Msa1320700 MtrunA17_Chr5g0430091 30.345 145 95 1 21 165 293 431 3.83e-16 76.6
Msa1320700 MtrunA17_Chr2g0280011 31.429 175 110 5 32 198 8 180 3.99e-16 74.3
Msa1320700 MtrunA17_Chr6g0451751 31.818 154 94 3 9 158 297 443 4.02e-16 76.6
Msa1320700 MtrunA17_Chr5g0403321 32.692 156 91 3 9 157 277 425 4.57e-16 76.6
Msa1320700 MtrunA17_Chr4g0047661 33.094 139 86 2 21 159 307 438 4.91e-16 76.3
Msa1320700 MtrunA17_Chr8g0351411 76.923 39 8 1 138 176 1 38 5.07e-16 69.7
Msa1320700 MtrunA17_Chr6g0463801 31.884 138 87 2 22 159 288 418 5.25e-16 76.3
Msa1320700 MtrunA17_Chr3g0116741 31.034 174 105 5 9 175 286 451 6.72e-16 75.9
Msa1320700 MtrunA17_Chr4g0058261 29.936 157 102 3 19 175 319 467 7.76e-16 75.9
Msa1320700 MtrunA17_Chr8g0351801 31.884 138 86 3 23 160 301 430 1.15e-15 75.5
Msa1320700 MtrunA17_Chr2g0280061 30.857 175 111 5 32 198 8 180 1.17e-15 72.8
Msa1320700 MtrunA17_Chr7g0218601 29.885 174 104 6 9 175 273 435 1.22e-15 75.1
Msa1320700 MtrunA17_Chr4g0047631 31.724 145 92 2 21 165 302 439 1.23e-15 75.1
Msa1320700 MtrunA17_Chr4g0058281 28.902 173 104 5 25 196 307 461 1.78e-15 74.7
Msa1320700 MtrunA17_Chr6g0451641 33.333 129 79 2 30 158 315 436 2.38e-15 74.3
Msa1320700 MtrunA17_Chr1g0174451 28.261 184 102 6 9 177 278 446 2.76e-15 74.3
Msa1320700 MtrunA17_Chr7g0218611 29.268 164 101 4 9 165 272 427 2.78e-15 74.3
Msa1320700 MtrunA17_Chr4g0008101 31.618 136 86 2 23 158 315 443 3.15e-15 73.9
Msa1320700 MtrunA17_Chr2g0280081 30.392 204 129 6 32 224 801 1002 3.15e-15 74.3
Msa1320700 MtrunA17_Chr2g0280081 30.964 197 123 6 32 217 300 494 6.35e-15 73.6
Msa1320700 MtrunA17_Chr8g0387101 32.824 131 87 1 32 162 301 430 3.35e-15 73.9
Msa1320700 MtrunA17_Chr2g0280121 31.156 199 124 6 32 219 306 502 3.40e-15 73.9
Msa1320700 MtrunA17_Chr1g0197871 29.936 157 97 4 7 158 267 415 3.92e-15 73.9
Msa1320700 MtrunA17_Chr1g0164211 32.192 146 91 3 30 175 293 430 6.26e-15 73.2
Msa1320700 MtrunA17_Chr3g0101731 29.940 167 109 3 25 191 295 453 6.76e-15 73.2
Msa1320700 MtrunA17_Chr5g0431641 29.630 162 99 4 6 159 267 421 8.45e-15 72.8
Msa1320700 MtrunA17_Chr2g0296651 30.612 147 94 3 16 162 283 421 1.05e-14 72.4
Msa1320700 MtrunA17_Chr4g0046351 29.710 138 89 3 25 162 294 423 1.35e-14 72.4
Msa1320700 MtrunA17_Chr8g0356001 28.931 159 100 3 7 159 276 427 1.59e-14 72.0
Msa1320700 MtrunA17_Chr1g0174441 30.612 147 90 4 18 164 319 453 1.64e-14 72.0
Msa1320700 MtrunA17_Chr3g0082701 32.867 143 88 4 17 158 309 444 1.85e-14 72.0
Msa1320700 MtrunA17_Chr2g0280071 34.109 129 83 2 32 160 333 459 1.90e-14 72.0
Msa1320700 MtrunA17_Chr5g0406651 31.792 173 103 5 10 175 269 433 1.94e-14 71.6
Msa1320700 MtrunA17_Chr8g0362701 28.049 164 102 5 9 164 276 431 2.08e-14 71.6
Msa1320700 MtrunA17_Chr5g0446101 28.144 167 102 5 3 159 76 234 2.33e-14 70.9
Msa1320700 MtrunA17_Chr4g0011851 31.852 135 85 2 25 159 9 136 2.35e-14 69.3
Msa1320700 MtrunA17_Chr5g0395321 29.787 141 92 2 18 158 284 417 2.51e-14 71.6
Msa1320700 MtrunA17_Chr5g0409051 33.333 129 79 2 32 160 308 429 2.65e-14 71.2
Msa1320700 MtrunA17_Chr4g0011981 28.481 158 99 4 9 159 267 417 3.22e-14 71.2
Msa1320700 MtrunA17_Chr4g0035921 30.719 153 98 3 25 177 307 451 3.38e-14 71.2
Msa1320700 MtrunA17_Chr3g0101701 34.815 135 81 3 25 159 299 426 3.51e-14 70.9
Msa1320700 MtrunA17_Chr4g0046321 28.261 138 91 3 25 162 294 423 4.21e-14 70.9
Msa1320700 MtrunA17_Chr5g0431671 30.128 156 97 3 9 159 274 422 4.22e-14 70.9
Msa1320700 MtrunA17_Chr4g0052861 31.973 147 92 3 16 162 283 421 4.53e-14 70.5
Msa1320700 MtrunA17_Chr8g0346261 30.120 166 104 6 4 164 313 471 4.58e-14 70.9
Msa1320700 MtrunA17_Chr5g0431501 30.935 139 81 4 24 158 295 422 4.79e-14 70.5
Msa1320700 MtrunA17_Chr5g0431461 30.935 139 81 4 24 158 295 422 4.79e-14 70.5
Msa1320700 MtrunA17_Chr1g0197851 28.846 156 98 4 8 158 268 415 5.28e-14 70.5
Msa1320700 MtrunA17_Chr2g0314731 28.090 178 107 6 7 175 268 433 5.31e-14 70.5
Msa1320700 MtrunA17_Chr1g0197891 29.032 155 97 4 9 158 269 415 5.33e-14 70.5
Msa1320700 MtrunA17_Chr4g0053621 28.070 171 109 4 6 170 271 433 5.38e-14 70.5
Msa1320700 MtrunA17_Chr1g0197881 28.846 156 98 4 8 158 267 414 5.48e-14 70.5
Msa1320700 MtrunA17_Chr3g0101581 34.074 135 82 2 25 159 296 423 5.79e-14 70.5
Msa1320700 MtrunA17_Chr6g0463791 32.704 159 93 5 9 162 270 419 6.21e-14 70.1
Msa1320700 MtrunA17_Chr3g0101721 29.213 178 114 4 2 175 270 439 6.38e-14 70.1
Msa1320700 MtrunA17_Chr6g0451771 31.852 135 85 2 25 159 15 142 8.20e-14 68.2
Msa1320700 MtrunA17_Chr7g0246221 31.061 132 84 2 28 159 300 424 8.43e-14 69.7
Msa1320700 MtrunA17_Chr4g0024771 29.448 163 100 4 5 159 266 421 9.07e-14 69.7
Msa1320700 MtrunA17_Chr3g0101711 29.091 165 100 4 9 165 276 431 1.20e-13 69.3
Msa1320700 MtrunA17_Chr7g0224561 28.082 146 93 4 23 164 289 426 1.27e-13 69.3
Msa1320700 MtrunA17_Chr8g0339331 30.337 178 107 5 1 168 274 444 1.41e-13 69.3
Msa1320700 MtrunA17_Chr8g0354531 30.952 126 79 2 32 157 452 569 1.50e-13 69.3
Msa1320700 MtrunA17_Chr5g0445441 29.801 151 98 3 25 175 335 477 1.62e-13 68.9
Msa1320700 MtrunA17_Chr5g0445461 29.787 141 92 2 25 165 294 427 2.04e-13 68.9
Msa1320700 MtrunA17_Chr8g0344181 29.008 131 86 2 31 161 306 429 2.42e-13 68.6
Msa1320700 MtrunA17_Chr5g0419451 28.125 160 100 6 8 161 293 443 2.48e-13 68.6
Msa1320700 MtrunA17_Chr6g0477081 27.778 126 85 1 20 145 119 238 2.95e-13 67.0
Msa1320700 MtrunA17_Chr5g0395381 27.660 141 95 2 18 158 259 392 2.99e-13 68.2
Msa1320700 MtrunA17_Chr5g0445421 31.111 135 86 2 25 159 347 474 3.28e-13 68.2
Msa1320700 MtrunA17_Chr4g0039901 28.834 163 88 5 9 158 272 419 3.33e-13 68.2
Msa1320700 MtrunA17_Chr8g0362731 35.385 130 74 3 35 164 218 337 3.36e-13 67.8
Msa1320700 MtrunA17_Chr8g0361471 29.936 157 102 3 19 175 289 437 3.42e-13 68.2
Msa1320700 MtrunA17_Chr6g0451741 31.013 158 98 5 4 157 314 464 3.44e-13 68.2
Msa1320700 MtrunA17_Chr4g0046331 28.148 135 89 3 25 159 294 420 3.77e-13 68.2
Msa1320700 MtrunA17_Chr5g0445451 30.464 151 97 3 25 175 294 436 4.11e-13 67.8
Msa1320700 MtrunA17_Chr2g0288661 34.091 132 67 4 32 157 325 442 4.58e-13 67.8
Msa1320700 MtrunA17_Chr6g0451781 30.435 138 88 3 21 158 347 476 5.24e-13 67.8
Msa1320700 MtrunA17_Chr5g0395331 28.025 157 101 4 7 158 275 424 5.52e-13 67.4
Msa1320700 MtrunA17_Chr6g0466331 29.801 151 98 3 25 175 295 437 6.13e-13 67.4
Msa1320700 MtrunA17_Chr6g0465511 29.801 151 98 3 25 175 295 437 6.36e-13 67.4
Msa1320700 MtrunA17_Chr5g0431591 28.148 135 90 2 25 159 112 239 6.70e-13 66.6
Msa1320700 MtrunA17_Chr1g0162811 28.834 163 102 4 2 158 266 420 7.60e-13 67.0
Msa1320700 MtrunA17_Chr4g0061381 29.814 161 98 3 6 158 266 419 8.30e-13 67.0
Msa1320700 MtrunA17_Chr7g0224551 26.712 146 95 4 23 164 289 426 8.94e-13 67.0
Msa1320700 MtrunA17_Chr5g0413911 32.812 128 82 2 32 159 327 450 9.80e-13 66.6
Msa1320700 MtrunA17_Chr6g0466901 29.496 139 92 2 20 158 304 436 1.01e-12 66.6
Msa1320700 MtrunA17_Chr1g0174431 34.615 130 75 4 35 162 4 125 1.04e-12 64.7
Msa1320700 MtrunA17_Chr2g0307301 35.115 131 65 4 32 156 325 441 1.11e-12 66.6
Msa1320700 MtrunA17_Chr3g0086691 29.193 161 99 4 6 158 269 422 1.22e-12 66.6
Msa1320700 MtrunA17_Chr4g0039391 28.767 146 94 3 15 157 284 422 1.59e-12 66.2
Msa1320700 MtrunA17_Chr1g0210091 28.859 149 94 4 16 163 321 458 2.07e-12 65.9
Msa1320700 MtrunA17_Chr7g0265611 30.303 165 102 3 2 161 282 438 2.56e-12 65.5
Msa1320700 MtrunA17_Chr3g0101631 27.778 162 105 3 3 159 263 417 2.64e-12 65.5
Msa1320700 MtrunA17_Chr4g0011901 28.481 158 99 4 9 159 267 417 2.82e-12 65.5
Msa1320700 MtrunA17_Chr8g0339311 27.737 137 92 2 23 159 313 442 3.00e-12 65.5
Msa1320700 MtrunA17_Chr3g0101671 30.556 144 93 2 22 165 296 432 3.13e-12 65.1
Msa1320700 MtrunA17_Chr8g0354511 32.061 131 71 3 32 157 331 448 3.89e-12 65.1
Msa1320700 MtrunA17_Chr1g0156061 31.646 158 94 4 8 158 237 387 4.04e-12 65.1
Msa1320700 MtrunA17_Chr8g0364651 29.252 147 99 2 18 164 282 423 4.35e-12 64.7
Msa1320700 MtrunA17_Chr3g0094231 27.612 134 90 2 25 158 293 419 5.29e-12 64.7
Msa1320700 MtrunA17_Chr6g0466941 29.412 136 90 2 23 158 308 437 6.00e-12 64.3
Msa1320700 MtrunA17_Chr5g0405001 28.105 153 102 3 25 177 307 451 8.54e-12 63.9
Msa1320700 MtrunA17_Chr4g0011941 30.469 128 82 2 32 159 1 121 1.13e-11 62.0
Msa1320700 MtrunA17_Chr3g0101571 32.593 135 84 2 25 159 293 420 1.31e-11 63.5
Msa1320700 MtrunA17_Chr1g0160851 27.160 162 91 5 9 158 271 417 1.52e-11 63.2
Msa1320700 MtrunA17_Chr1g0164341 64.103 39 14 0 138 176 1 39 1.61e-11 59.3
Msa1320700 MtrunA17_Chr1g0200961 30.303 165 102 5 7 165 267 424 1.99e-11 62.8
Msa1320700 MtrunA17_Chr1g0160861 27.160 162 91 5 9 158 112 258 2.05e-11 62.4
Msa1320700 MtrunA17_Chr1g0156081 31.210 157 94 4 9 158 306 455 2.05e-11 62.8
Msa1320700 MtrunA17_Chr4g0011881 29.677 155 98 3 9 159 270 417 2.29e-11 62.8
Msa1320700 MtrunA17_Chr2g0309301 45.614 57 31 0 9 65 103 159 3.26e-11 60.5
Msa1320700 MtrunA17_Chr4g0011871 27.957 186 115 6 1 175 256 433 6.03e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320700 AT2G45510.1 61.017 177 59 3 9 176 274 449 3.88e-68 218
Msa1320700 AT2G44890.1 57.627 177 65 3 9 176 274 449 3.63e-63 205
Msa1320700 AT2G44890.2 56.442 163 62 2 9 162 270 432 6.81e-56 185
Msa1320700 AT1G69500.1 49.744 195 69 5 9 176 273 465 1.41e-53 180
Msa1320700 AT1G34540.1 47.953 171 86 3 9 177 271 440 6.79e-51 172
Msa1320700 AT3G56630.1 47.368 171 87 3 9 177 271 440 5.54e-50 170
Msa1320700 AT2G27690.1 45.349 172 84 3 9 176 268 433 1.44e-46 161
Msa1320700 AT5G23190.1 45.604 182 87 3 6 176 302 482 6.89e-45 157
Msa1320700 AT5G08250.1 43.716 183 90 3 6 176 237 418 5.41e-44 154
Msa1320700 AT5G08250.2 43.716 183 90 3 6 176 299 480 8.86e-44 154
Msa1320700 AT4G00360.1 41.341 179 98 3 5 176 275 453 4.60e-42 150
Msa1320700 AT1G24540.1 43.017 179 90 3 8 175 284 461 5.46e-42 149
Msa1320700 AT1G63710.1 43.750 176 93 4 6 176 275 449 1.09e-41 148
Msa1320700 AT2G45970.1 42.286 175 94 3 9 176 278 452 1.74e-41 148
Msa1320700 AT1G01600.1 41.111 180 98 4 4 175 275 454 7.11e-40 144
Msa1320700 AT3G48520.1 42.197 173 86 4 9 176 278 441 1.58e-39 142
Msa1320700 AT5G58860.1 41.053 190 97 4 4 178 267 456 8.01e-39 140
Msa1320700 AT1G13150.1 38.547 179 97 3 9 175 281 458 1.47e-37 137
Msa1320700 AT2G23180.1 41.463 164 86 3 21 178 301 460 3.43e-37 136
Msa1320700 AT1G13140.2 36.111 180 102 3 9 176 262 440 3.66e-37 136
Msa1320700 AT4G32170.1 37.968 187 99 3 4 178 270 451 4.91e-37 135
Msa1320700 AT1G13140.1 36.111 180 102 3 9 176 288 466 5.29e-37 135
Msa1320700 AT1G47620.1 39.572 187 97 4 4 178 281 463 6.03e-37 135
Msa1320700 AT1G57750.1 39.157 166 89 2 12 177 286 439 7.85e-37 135
Msa1320700 AT5G02900.1 41.667 156 88 1 21 176 268 420 6.05e-36 132
Msa1320700 AT5G63450.1 39.080 174 91 3 9 176 280 444 6.32e-36 132
Msa1320700 AT5G52320.1 40.351 171 89 4 12 178 289 450 6.48e-36 132
Msa1320700 AT5G52320.2 40.351 171 89 4 12 178 289 450 7.07e-36 132
Msa1320700 AT2G21910.1 39.286 168 96 3 11 177 287 449 7.66e-36 132
Msa1320700 AT5G63450.2 39.080 174 91 3 9 176 338 502 1.21e-35 132
Msa1320700 AT4G39480.1 38.690 168 93 2 21 178 294 461 1.36e-35 132
Msa1320700 AT4G39500.1 37.288 177 97 2 9 177 239 409 1.72e-35 131
Msa1320700 AT4G39500.2 37.288 177 97 2 9 177 289 459 3.02e-35 131
Msa1320700 AT3G26125.1 34.555 191 104 4 4 175 285 473 3.27e-35 131
Msa1320700 AT1G65340.1 40.764 157 84 2 21 177 299 446 1.48e-34 129
Msa1320700 AT3G01900.1 37.572 173 97 3 9 176 266 432 2.06e-34 128
Msa1320700 AT4G39490.1 35.385 195 107 3 3 178 270 464 2.53e-34 128
Msa1320700 AT1G57750.2 39.735 151 79 2 12 162 286 424 6.93e-34 126
Msa1320700 AT4G39510.1 39.506 162 89 2 21 178 297 453 9.05e-34 127
Msa1320700 AT4G13310.1 35.632 174 98 3 9 175 267 433 6.05e-25 102
Msa1320700 AT4G13290.1 35.928 167 99 3 9 175 268 426 2.88e-24 100
Msa1320700 AT4G13770.1 35.374 147 91 1 19 165 284 426 3.56e-22 94.7
Msa1320700 AT3G48310.1 33.333 171 103 3 9 175 262 425 2.17e-21 92.4
Msa1320700 AT2G30770.1 34.028 144 87 2 16 159 282 417 2.46e-21 92.0
Msa1320700 AT5G24950.1 36.301 146 83 3 15 159 281 417 6.03e-21 90.9
Msa1320700 AT3G48270.1 28.729 181 115 3 4 177 253 426 1.78e-20 89.7
Msa1320700 AT3G48280.1 31.667 180 108 4 4 175 252 424 3.44e-20 89.0
Msa1320700 AT4G37330.1 33.333 147 91 2 15 161 277 416 1.35e-19 87.0
Msa1320700 AT4G31500.1 33.577 137 85 1 25 161 289 419 1.77e-19 86.7
Msa1320700 AT2G24180.1 29.570 186 116 4 23 201 295 472 3.33e-19 85.9
Msa1320700 AT3G28740.1 30.573 157 97 3 6 157 274 423 3.50e-19 85.9
Msa1320700 AT3G53130.1 32.768 177 105 6 3 175 314 480 7.00e-19 85.1
Msa1320700 AT4G20240.1 31.928 166 106 2 19 184 283 441 2.00e-18 83.6
Msa1320700 AT1G31800.1 34.586 133 78 3 25 157 367 490 4.00e-18 83.2
Msa1320700 AT3G48300.1 31.210 157 101 2 19 175 273 422 4.32e-18 82.8
Msa1320700 AT3G48300.2 31.210 157 101 2 19 175 275 424 4.34e-18 82.8
Msa1320700 AT3G48290.1 35.461 141 85 1 19 159 277 411 8.52e-18 82.0
Msa1320700 AT3G48320.1 33.333 171 103 3 9 175 262 425 1.41e-17 81.3
Msa1320700 AT5G25140.1 30.625 160 95 3 9 159 262 414 1.42e-17 81.3
Msa1320700 AT4G37310.1 28.502 207 114 5 20 226 290 462 1.72e-17 81.3
Msa1320700 AT5G24960.1 36.025 161 94 4 15 175 282 433 1.72e-17 80.9
Msa1320700 AT4G37340.1 30.822 146 94 2 16 161 281 419 2.15e-17 80.9
Msa1320700 AT4G15110.1 29.070 172 102 5 4 163 326 489 3.67e-17 80.1
Msa1320700 AT5G57220.1 30.675 163 101 3 3 160 258 413 3.99e-17 80.1
Msa1320700 AT4G37320.1 31.690 142 90 2 20 161 285 419 4.13e-17 80.1
Msa1320700 AT2G30750.1 33.333 132 83 1 28 159 291 417 5.51e-17 79.7
Msa1320700 AT2G23190.1 31.098 164 100 4 3 160 306 462 5.57e-17 79.7
Msa1320700 AT4G37400.1 31.884 138 87 2 20 157 280 410 5.70e-17 79.7
Msa1320700 AT2G23220.1 31.250 160 98 4 6 160 281 433 2.51e-16 77.8
Msa1320700 AT3G26280.1 33.824 136 85 2 24 159 294 424 4.18e-16 77.0
Msa1320700 AT5G57260.1 28.467 137 94 2 23 159 289 421 4.25e-16 77.0
Msa1320700 AT3G26280.2 33.824 136 85 2 24 159 311 441 4.26e-16 77.0
Msa1320700 AT5G25180.1 30.818 159 94 3 9 158 262 413 9.29e-16 75.9
Msa1320700 AT3G26210.1 30.435 138 90 2 22 159 290 421 1.29e-15 75.5
Msa1320700 AT2G42250.1 32.468 154 94 4 25 176 300 445 1.41e-15 75.5
Msa1320700 AT5G42590.1 33.121 157 98 2 19 175 283 432 1.97e-15 75.1
Msa1320700 AT3G26270.1 30.719 153 98 3 9 159 277 423 2.24e-15 74.7
Msa1320700 AT1G13080.2 31.288 163 97 4 4 157 146 302 2.27e-15 74.7
Msa1320700 AT1G13080.1 30.409 171 104 4 4 165 264 428 2.84e-15 74.7
Msa1320700 AT1G11610.2 30.556 144 92 2 16 159 282 417 2.90e-15 74.7
Msa1320700 AT3G26310.1 28.777 139 92 2 23 161 288 419 2.97e-15 74.7
Msa1320700 AT1G11610.1 30.556 144 92 2 16 159 282 417 3.32e-15 74.3
Msa1320700 AT3G26160.1 29.412 136 90 2 24 159 293 422 3.96e-15 74.3
Msa1320700 AT4G37370.1 27.841 176 114 4 2 172 261 428 4.21e-15 73.9
Msa1320700 AT3G48290.2 35.714 126 75 1 34 159 318 437 5.91e-15 73.6
Msa1320700 AT3G26300.1 30.216 139 90 2 23 161 289 420 6.23e-15 73.6
Msa1320700 AT5G25120.1 32.000 150 94 3 26 175 288 429 6.82e-15 73.6
Msa1320700 AT4G37360.1 29.452 146 96 2 16 161 281 419 8.19e-15 73.2
Msa1320700 AT3G26230.1 31.852 135 87 2 25 159 291 420 9.61e-15 73.2
Msa1320700 AT1G74540.1 32.168 143 90 2 18 160 275 410 1.22e-14 72.8
Msa1320700 AT5G25130.1 31.618 136 86 2 24 159 286 414 1.37e-14 72.4
Msa1320700 AT4G37410.1 28.302 159 102 3 4 157 261 412 2.28e-14 72.0
Msa1320700 AT1G74550.1 31.333 150 93 3 14 160 262 404 2.54e-14 71.6
Msa1320700 AT3G26830.1 28.302 159 107 3 19 177 284 435 3.03e-14 71.6
Msa1320700 AT1G64930.1 33.333 129 80 2 32 160 308 430 3.06e-14 71.6
Msa1320700 AT5G52400.1 30.380 158 99 4 2 156 293 442 4.45e-14 71.2
Msa1320700 AT3G25180.1 26.702 191 120 6 9 187 282 464 5.02e-14 70.9
Msa1320700 AT5G07990.1 26.630 184 116 4 4 175 262 438 5.88e-14 70.9
Msa1320700 AT5G36220.1 29.861 144 94 2 17 160 288 424 6.40e-14 70.5
Msa1320700 AT4G37430.1 28.571 147 98 2 16 162 281 420 6.89e-14 70.5
Msa1320700 AT5G35715.1 29.801 151 98 3 9 157 211 355 7.00e-14 70.5
Msa1320700 AT2G40890.1 30.597 134 86 2 28 161 292 418 7.01e-14 70.5
Msa1320700 AT3G26220.1 32.121 165 98 4 4 159 264 423 7.44e-14 70.5
Msa1320700 AT3G61040.1 27.329 161 104 4 4 158 263 416 8.31e-14 70.5
Msa1320700 AT1G66540.2 29.412 153 100 3 10 161 102 247 9.69e-14 69.7
Msa1320700 AT5G36220.2 30.435 138 89 2 20 157 145 275 1.03e-13 69.7
Msa1320700 AT5G67310.1 31.707 164 98 5 10 166 281 437 1.14e-13 70.1
Msa1320700 AT4G39950.2 27.273 176 114 4 9 177 344 512 1.18e-13 70.1
Msa1320700 AT1G66540.1 29.412 153 100 3 10 161 161 306 1.23e-13 69.7
Msa1320700 AT4G12300.1 27.536 138 93 2 24 161 303 433 1.29e-13 69.7
Msa1320700 AT2G22330.2 26.136 176 116 4 9 177 329 497 1.34e-13 69.7
Msa1320700 AT4G39950.1 27.273 176 114 4 9 177 304 472 1.38e-13 69.7
Msa1320700 AT2G22330.1 26.136 176 116 4 9 177 306 474 1.40e-13 69.7
Msa1320700 AT5G10600.1 25.000 156 105 3 7 157 282 430 1.50e-13 69.7
Msa1320700 AT2G26710.1 29.801 151 99 2 9 159 298 441 2.49e-13 68.9
Msa1320700 AT4G12330.1 25.316 158 107 3 7 160 285 435 2.55e-13 68.9
Msa1320700 AT1G64940.1 31.783 129 82 2 32 160 310 432 2.64e-13 68.9
Msa1320700 AT1G13090.2 28.324 173 100 6 1 159 256 418 2.64e-13 68.9
Msa1320700 AT4G36220.1 29.412 153 100 3 25 177 309 453 2.84e-13 68.9
Msa1320700 AT3G26330.1 25.180 139 97 2 23 161 289 420 3.18e-13 68.6
Msa1320700 AT3G26200.1 28.758 153 101 3 9 159 273 419 3.84e-13 68.2
Msa1320700 AT2G45580.1 31.343 134 84 3 25 158 303 428 6.48e-13 67.8
Msa1320700 AT2G45550.1 28.671 143 95 2 19 161 295 430 6.90e-13 67.8
Msa1320700 AT2G45580.2 31.343 134 84 3 25 158 149 274 7.23e-13 67.4
Msa1320700 AT3G26180.2 29.371 143 95 2 19 161 154 290 7.33e-13 67.4
Msa1320700 AT4G13310.2 31.538 130 76 2 9 131 267 390 7.52e-13 67.4
Msa1320700 AT3G26180.1 28.671 143 96 2 19 161 288 424 9.25e-13 67.4
Msa1320700 AT5G06905.1 31.538 130 82 3 29 158 295 417 1.25e-12 67.0
Msa1320700 AT3G26190.1 29.412 153 100 3 9 159 273 419 1.94e-12 66.2
Msa1320700 AT3G26170.1 29.078 141 94 2 19 159 288 422 2.08e-12 66.2
Msa1320700 AT1G13110.1 25.949 158 104 3 9 159 273 424 3.84e-12 65.5
Msa1320700 AT2G12190.1 30.233 129 84 2 32 160 309 431 7.40e-12 64.7
Msa1320700 AT5G24900.2 32.258 124 74 3 35 157 220 334 7.43e-12 64.3
Msa1320700 AT5G24900.1 32.258 124 74 3 35 157 337 451 7.61e-12 64.7
Msa1320700 AT1G64950.1 30.233 129 84 2 32 160 309 431 8.59e-12 64.3
Msa1320700 AT3G44250.1 30.065 153 99 3 9 159 272 418 8.59e-12 64.3
Msa1320700 AT3G26320.1 27.143 140 93 4 23 161 289 420 1.10e-11 63.9
Msa1320700 AT3G14620.1 28.906 128 85 1 32 159 320 441 1.13e-11 63.9
Msa1320700 AT3G26290.2 30.216 139 90 2 23 161 302 433 1.20e-11 63.9
Msa1320700 AT3G53300.1 31.373 153 97 3 9 159 273 419 1.20e-11 63.9
Msa1320700 AT5G05260.2 27.044 159 103 3 9 161 294 445 1.23e-11 63.9
Msa1320700 AT3G26290.1 30.216 139 90 2 23 161 289 420 1.36e-11 63.9
Msa1320700 AT1G16400.1 27.374 179 113 4 9 177 296 467 1.89e-11 63.5
Msa1320700 AT5G05260.1 28.571 133 88 2 29 161 288 413 1.92e-11 63.2
Msa1320700 AT5G06900.1 28.571 133 87 3 25 157 294 418 2.25e-11 63.2
Msa1320700 AT3G53280.1 30.065 153 99 3 9 159 271 417 2.26e-11 63.2
Msa1320700 AT1G58260.1 24.870 193 123 4 34 221 319 494 3.01e-11 62.8
Msa1320700 AT1G16410.1 27.374 179 113 4 9 177 297 468 3.39e-11 62.8

Find 37 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAACTTGAAAGGGCTTTC+TGG 0.238055 8_4:+25485274 None:intergenic
AGAAAGCCCTTTCAAGTTTA+CGG 0.247768 8_4:-25485272 Msa1320700:CDS
CAACGGCCGCCACACTTTCT+TGG 0.259320 8_4:-25485766 Msa1320700:CDS
ATTCTGAACTTTGTTATTGC+TGG 0.311168 8_4:-25485797 Msa1320700:CDS
CACATCCCTATAACTTTGTT+TGG 0.318592 8_4:-25485177 Msa1320700:CDS
CAGAAAATATGAGAGGAGTT+TGG 0.357623 8_4:-25485131 Msa1320700:CDS
GAAAGATGGCTTGATGAAAA+TGG 0.366675 8_4:-25485307 Msa1320700:CDS
GGCATGCCAAACAAAGTTAT+AGG 0.374205 8_4:+25485171 None:intergenic
TTCTGAACTTTGTTATTGCT+GGG 0.413620 8_4:-25485796 Msa1320700:CDS
TTCATCCTCCCCATTGCATA+AGG 0.419437 8_4:+25485367 None:intergenic
GCATGCCAAACAAAGTTATA+GGG 0.431270 8_4:+25485172 None:intergenic
TCGTACCAACCTTATGCAAT+GGG 0.451370 8_4:-25485376 Msa1320700:CDS
TGGGGAGGATGAAATTCATA+TGG 0.472302 8_4:-25485357 Msa1320700:CDS
CATGCCACAACTGTGACTTT+AGG 0.513643 8_4:-25485154 Msa1320700:CDS
AGCCTTACCACAGGAACTGC+AGG 0.517292 8_4:+25485563 None:intergenic
GAAAAGCCGTAAACTTGAAA+GGG 0.519563 8_4:+25485266 None:intergenic
TCCTCCCCATTGCATAAGGT+TGG 0.520423 8_4:+25485371 None:intergenic
TGAAAAGCCGTAAACTTGAA+AGG 0.526820 8_4:+25485265 None:intergenic
GTCGTACCAACCTTATGCAA+TGG 0.539073 8_4:-25485377 Msa1320700:CDS
AGGAATTTAGACCTGAAAGA+TGG 0.543082 8_4:-25485321 Msa1320700:CDS
CATCATCTCATTACAATAAG+CGG 0.562536 8_4:-25485201 Msa1320700:CDS
AGAGTGGAGATATTCTATCA+AGG 0.564034 8_4:-25485865 Msa1320700:CDS
AATTATTTGTAGAGTTGGTG+AGG 0.569104 8_4:-25484885 Msa1320700:intron
GGGGAGGATGAAATTCATAT+GGG 0.574688 8_4:-25485356 Msa1320700:CDS
TGAACTATGTAGAGAAAGAG+TGG 0.578729 8_4:-25485881 Msa1320700:intron
ACTTTATCCTGCAGTTCCTG+TGG 0.593412 8_4:-25485570 Msa1320700:intron
TCTGCCTAAAGTCACAGTTG+TGG 0.614532 8_4:+25485150 None:intergenic
TTATCTTCATGCAACACTCA+CGG 0.617909 8_4:-25485603 Msa1320700:CDS
GCTGATGACACATTACCAGA+TGG 0.634362 8_4:-25485427 Msa1320700:CDS
CATATGGGGTGATGATGCAG+AGG 0.636597 8_4:-25485341 Msa1320700:CDS
ACCAACCTTATGCAATGGGG+AGG 0.640710 8_4:-25485372 Msa1320700:CDS
ATACATGAACCAAGAAAGTG+TGG 0.665910 8_4:+25485757 None:intergenic
CTTTAGGCAGAAAATATGAG+AGG 0.669789 8_4:-25485138 Msa1320700:CDS
CATGAACCAAGAAAGTGTGG+CGG 0.725021 8_4:+25485760 None:intergenic
GGGAGGATGAAATTCATATG+GGG 0.726219 8_4:-25485355 Msa1320700:CDS
CGTACCAACCTTATGCAATG+GGG 0.730957 8_4:-25485375 Msa1320700:CDS
TATTGCTGGGAAAGACACAA+CGG 0.746263 8_4:-25485783 Msa1320700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTGTTGATTATTGCT+TGG - chr8_4:25484439-25484458 Msa1320700:intron 20.0%
!!! TTTCTGGTTAAATAATACAT+TGG - chr8_4:25485710-25485729 Msa1320700:CDS 20.0%
!! ATGAAAGAAAATATATCCTT+TGG - chr8_4:25485840-25485859 Msa1320700:CDS 20.0%
!! TGAAAGAAAATATATCCTTT+GGG - chr8_4:25485841-25485860 Msa1320700:CDS 20.0%
!!! ATACTTGCTATGTAAAATTT+TGG - chr8_4:25486029-25486048 Msa1320700:intron 20.0%
!!! AAAATTTGTTGATTATTGCT+TGG - chr8_4:25484439-25484458 Msa1320700:intron 20.0%
!!! TTTCTGGTTAAATAATACAT+TGG - chr8_4:25485710-25485729 Msa1320700:CDS 20.0%
!! ATGAAAGAAAATATATCCTT+TGG - chr8_4:25485840-25485859 Msa1320700:CDS 20.0%
!! TGAAAGAAAATATATCCTTT+GGG - chr8_4:25485841-25485860 Msa1320700:CDS 20.0%
!!! ATACTTGCTATGTAAAATTT+TGG - chr8_4:25486029-25486048 Msa1320700:intron 20.0%
! TCAACAAATGAAGAATTCAA+AGG - chr8_4:25484609-25484628 Msa1320700:intron 25.0%
! CAACAAATGAAGAATTCAAA+GGG - chr8_4:25484610-25484629 Msa1320700:intron 25.0%
!!! TTTTTTACACTATATCCATC+TGG + chr8_4:25485210-25485229 None:intergenic 25.0%
! GATGGATATAGTGTAAAAAA+AGG - chr8_4:25485210-25485229 Msa1320700:CDS 25.0%
!! TTGGTAATTATTTGTAGAGT+TGG - chr8_4:25485729-25485748 Msa1320700:CDS 25.0%
! TCATAAATAACACTCAAAGA+TGG + chr8_4:25485779-25485798 None:intergenic 25.0%
!!! CTTTGAGTGTTATTTATGAT+CGG - chr8_4:25485780-25485799 Msa1320700:CDS 25.0%
! GAAAGAAAATATATCCTTTG+GGG - chr8_4:25485842-25485861 Msa1320700:CDS 25.0%
! AGATGAAATTGTTAAGCTTA+CGG - chr8_4:25486001-25486020 Msa1320700:intron 25.0%
!! AAAATTTTGGATAAATCTCG+TGG - chr8_4:25486042-25486061 Msa1320700:intron 25.0%
! TAATATTCCCAAGACAAATA+AGG + chr8_4:25486102-25486121 None:intergenic 25.0%
! CCAAAAAAAAGAGTAAATTC+AGG + chr8_4:25486131-25486150 None:intergenic 25.0%
!!! CCTGAATTTACTCTTTTTTT+TGG - chr8_4:25486128-25486147 Msa1320700:intron 25.0%
!!! TGCTCTAAAACAAAGAAATA+AGG + chr8_4:25486155-25486174 None:intergenic 25.0%
!!! TATTTCTTTGTTTTAGAGCA+AGG - chr8_4:25486155-25486174 Msa1320700:intron 25.0%
! TCAACAAATGAAGAATTCAA+AGG - chr8_4:25484609-25484628 Msa1320700:intron 25.0%
! CAACAAATGAAGAATTCAAA+GGG - chr8_4:25484610-25484629 Msa1320700:intron 25.0%
!!! TTTTTTACACTATATCCATC+TGG + chr8_4:25485210-25485229 None:intergenic 25.0%
! GATGGATATAGTGTAAAAAA+AGG - chr8_4:25485210-25485229 Msa1320700:CDS 25.0%
!! TTGGTAATTATTTGTAGAGT+TGG - chr8_4:25485729-25485748 Msa1320700:CDS 25.0%
! TCATAAATAACACTCAAAGA+TGG + chr8_4:25485779-25485798 None:intergenic 25.0%
!!! CTTTGAGTGTTATTTATGAT+CGG - chr8_4:25485780-25485799 Msa1320700:CDS 25.0%
! GAAAGAAAATATATCCTTTG+GGG - chr8_4:25485842-25485861 Msa1320700:CDS 25.0%
! AGATGAAATTGTTAAGCTTA+CGG - chr8_4:25486001-25486020 Msa1320700:intron 25.0%
!! AAAATTTTGGATAAATCTCG+TGG - chr8_4:25486042-25486061 Msa1320700:intron 25.0%
! TAATATTCCCAAGACAAATA+AGG + chr8_4:25486102-25486121 None:intergenic 25.0%
! CCAAAAAAAAGAGTAAATTC+AGG + chr8_4:25486131-25486150 None:intergenic 25.0%
!!! CCTGAATTTACTCTTTTTTT+TGG - chr8_4:25486128-25486147 Msa1320700:intron 25.0%
!!! TGCTCTAAAACAAAGAAATA+AGG + chr8_4:25486155-25486174 None:intergenic 25.0%
!!! TATTTCTTTGTTTTAGAGCA+AGG - chr8_4:25486155-25486174 Msa1320700:intron 25.0%
! TTGTTGATTATTGCTTGGTT+AGG - chr8_4:25484444-25484463 Msa1320700:intron 30.0%
!! ATTCTGAACTTTGTTATTGC+TGG - chr8_4:25484822-25484841 Msa1320700:intron 30.0%
!! TTCTGAACTTTGTTATTGCT+GGG - chr8_4:25484823-25484842 Msa1320700:intron 30.0%
TACTCTCATGCTTGTATAAT+AGG - chr8_4:25485096-25485115 Msa1320700:intron 30.0%
! CATCAAGATTCTTTTTATGC+AGG - chr8_4:25485152-25485171 Msa1320700:CDS 30.0%
TAGTGTAAAAAAAGGAGACA+TGG - chr8_4:25485218-25485237 Msa1320700:CDS 30.0%
CATCATCTCATTACAATAAG+CGG - chr8_4:25485418-25485437 Msa1320700:CDS 30.0%
!! TTAACCTTCTTTGAAGTTTC+TGG - chr8_4:25485694-25485713 Msa1320700:CDS 30.0%
TTAACCAGAAACTTCAAAGA+AGG + chr8_4:25485701-25485720 None:intergenic 30.0%
!! AATTATTTGTAGAGTTGGTG+AGG - chr8_4:25485734-25485753 Msa1320700:CDS 30.0%
ACTCAGAACAAATCAAAATC+AGG + chr8_4:25485938-25485957 None:intergenic 30.0%
! TTGTTGATTATTGCTTGGTT+AGG - chr8_4:25484444-25484463 Msa1320700:intron 30.0%
!! ATTCTGAACTTTGTTATTGC+TGG - chr8_4:25484822-25484841 Msa1320700:intron 30.0%
!! TTCTGAACTTTGTTATTGCT+GGG - chr8_4:25484823-25484842 Msa1320700:intron 30.0%
TACTCTCATGCTTGTATAAT+AGG - chr8_4:25485096-25485115 Msa1320700:intron 30.0%
! CATCAAGATTCTTTTTATGC+AGG - chr8_4:25485152-25485171 Msa1320700:CDS 30.0%
TAGTGTAAAAAAAGGAGACA+TGG - chr8_4:25485218-25485237 Msa1320700:CDS 30.0%
CATCATCTCATTACAATAAG+CGG - chr8_4:25485418-25485437 Msa1320700:CDS 30.0%
!! TTAACCTTCTTTGAAGTTTC+TGG - chr8_4:25485694-25485713 Msa1320700:CDS 30.0%
TTAACCAGAAACTTCAAAGA+AGG + chr8_4:25485701-25485720 None:intergenic 30.0%
!! AATTATTTGTAGAGTTGGTG+AGG - chr8_4:25485734-25485753 Msa1320700:CDS 30.0%
ACTCAGAACAAATCAAAATC+AGG + chr8_4:25485938-25485957 None:intergenic 30.0%
TGCTTGGTTAGGTAAATGTA+TGG - chr8_4:25484455-25484474 Msa1320700:intron 35.0%
GTTAGGTAAATGTATGGAAC+CGG - chr8_4:25484461-25484480 Msa1320700:intron 35.0%
TGAACTATGTAGAGAAAGAG+TGG - chr8_4:25484738-25484757 Msa1320700:intron 35.0%
AGAGTGGAGATATTCTATCA+AGG - chr8_4:25484754-25484773 Msa1320700:intron 35.0%
! ATCAAGGTTTTTGCAAGTGA+AGG - chr8_4:25484770-25484789 Msa1320700:intron 35.0%
ATACATGAACCAAGAAAGTG+TGG + chr8_4:25484865-25484884 None:intergenic 35.0%
TTATCTTCATGCAACACTCA+CGG - chr8_4:25485016-25485035 Msa1320700:intron 35.0%
AGGAATTTAGACCTGAAAGA+TGG - chr8_4:25485298-25485317 Msa1320700:CDS 35.0%
! TTTTCATCAAGCCATCTTTC+AGG + chr8_4:25485312-25485331 None:intergenic 35.0%
GAAAGATGGCTTGATGAAAA+TGG - chr8_4:25485312-25485331 Msa1320700:CDS 35.0%
!! AGAAAGCCCTTTCAAGTTTA+CGG - chr8_4:25485347-25485366 Msa1320700:CDS 35.0%
GAAAAGCCGTAAACTTGAAA+GGG + chr8_4:25485356-25485375 None:intergenic 35.0%
TGAAAAGCCGTAAACTTGAA+AGG + chr8_4:25485357-25485376 None:intergenic 35.0%
!!! TTTCAAGTTTACGGCTTTTC+AGG - chr8_4:25485356-25485375 Msa1320700:CDS 35.0%
CACATCCCTATAACTTTGTT+TGG - chr8_4:25485442-25485461 Msa1320700:CDS 35.0%
GCATGCCAAACAAAGTTATA+GGG + chr8_4:25485450-25485469 None:intergenic 35.0%
CTTTAGGCAGAAAATATGAG+AGG - chr8_4:25485481-25485500 Msa1320700:intron 35.0%
CAGAAAATATGAGAGGAGTT+TGG - chr8_4:25485488-25485507 Msa1320700:intron 35.0%
CTTCAAAGAAGGTTAAACGA+TGG + chr8_4:25485690-25485709 None:intergenic 35.0%
! ATATATCCTTTGGGGATGAA+TGG - chr8_4:25485850-25485869 Msa1320700:CDS 35.0%
AGAAGTTCAGAGTTGTCATA+GGG - chr8_4:25485874-25485893 Msa1320700:intron 35.0%
ACACATGTGTGATGTTTAGT+TGG - chr8_4:25486072-25486091 Msa1320700:intron 35.0%
TGCTTGGTTAGGTAAATGTA+TGG - chr8_4:25484455-25484474 Msa1320700:intron 35.0%
GTTAGGTAAATGTATGGAAC+CGG - chr8_4:25484461-25484480 Msa1320700:intron 35.0%
TGAACTATGTAGAGAAAGAG+TGG - chr8_4:25484738-25484757 Msa1320700:intron 35.0%
AGAGTGGAGATATTCTATCA+AGG - chr8_4:25484754-25484773 Msa1320700:intron 35.0%
! ATCAAGGTTTTTGCAAGTGA+AGG - chr8_4:25484770-25484789 Msa1320700:intron 35.0%
ATACATGAACCAAGAAAGTG+TGG + chr8_4:25484865-25484884 None:intergenic 35.0%
TTATCTTCATGCAACACTCA+CGG - chr8_4:25485016-25485035 Msa1320700:intron 35.0%
AGGAATTTAGACCTGAAAGA+TGG - chr8_4:25485298-25485317 Msa1320700:CDS 35.0%
! TTTTCATCAAGCCATCTTTC+AGG + chr8_4:25485312-25485331 None:intergenic 35.0%
GAAAGATGGCTTGATGAAAA+TGG - chr8_4:25485312-25485331 Msa1320700:CDS 35.0%
!! AGAAAGCCCTTTCAAGTTTA+CGG - chr8_4:25485347-25485366 Msa1320700:CDS 35.0%
GAAAAGCCGTAAACTTGAAA+GGG + chr8_4:25485356-25485375 None:intergenic 35.0%
TGAAAAGCCGTAAACTTGAA+AGG + chr8_4:25485357-25485376 None:intergenic 35.0%
!!! TTTCAAGTTTACGGCTTTTC+AGG - chr8_4:25485356-25485375 Msa1320700:CDS 35.0%
CACATCCCTATAACTTTGTT+TGG - chr8_4:25485442-25485461 Msa1320700:CDS 35.0%
GCATGCCAAACAAAGTTATA+GGG + chr8_4:25485450-25485469 None:intergenic 35.0%
CTTTAGGCAGAAAATATGAG+AGG - chr8_4:25485481-25485500 Msa1320700:intron 35.0%
CAGAAAATATGAGAGGAGTT+TGG - chr8_4:25485488-25485507 Msa1320700:intron 35.0%
CTTCAAAGAAGGTTAAACGA+TGG + chr8_4:25485690-25485709 None:intergenic 35.0%
! ATATATCCTTTGGGGATGAA+TGG - chr8_4:25485850-25485869 Msa1320700:CDS 35.0%
AGAAGTTCAGAGTTGTCATA+GGG - chr8_4:25485874-25485893 Msa1320700:intron 35.0%
ACACATGTGTGATGTTTAGT+TGG - chr8_4:25486072-25486091 Msa1320700:intron 35.0%
TATTGCTGGGAAAGACACAA+CGG - chr8_4:25484836-25484855 Msa1320700:intron 40.0%
!! GAAGCTTTTTCTTGTACTGC+AGG + chr8_4:25484903-25484922 None:intergenic 40.0%
! TTCAAAAGTAGCCTTACCAC+AGG + chr8_4:25485068-25485087 None:intergenic 40.0%
TCGTACCAACCTTATGCAAT+GGG - chr8_4:25485243-25485262 Msa1320700:intron 40.0%
TGGGGAGGATGAAATTCATA+TGG - chr8_4:25485262-25485281 Msa1320700:intron 40.0%
GGGGAGGATGAAATTCATAT+GGG - chr8_4:25485263-25485282 Msa1320700:intron 40.0%
GGGAGGATGAAATTCATATG+GGG - chr8_4:25485264-25485283 Msa1320700:CDS 40.0%
GTAAACTTGAAAGGGCTTTC+TGG + chr8_4:25485348-25485367 None:intergenic 40.0%
GGCATGCCAAACAAAGTTAT+AGG + chr8_4:25485451-25485470 None:intergenic 40.0%
CATGTTCTTACCATCTGCAT+AGG + chr8_4:25485552-25485571 None:intergenic 40.0%
CAGAAGTTCAGAGTTGTCAT+AGG - chr8_4:25485873-25485892 Msa1320700:intron 40.0%
! TTGGCTGTCCTTATTTGTCT+TGG - chr8_4:25486091-25486110 Msa1320700:intron 40.0%
! TGGCTGTCCTTATTTGTCTT+GGG - chr8_4:25486092-25486111 Msa1320700:intron 40.0%
TATTGCTGGGAAAGACACAA+CGG - chr8_4:25484836-25484855 Msa1320700:intron 40.0%
!! GAAGCTTTTTCTTGTACTGC+AGG + chr8_4:25484903-25484922 None:intergenic 40.0%
! TTCAAAAGTAGCCTTACCAC+AGG + chr8_4:25485068-25485087 None:intergenic 40.0%
TCGTACCAACCTTATGCAAT+GGG - chr8_4:25485243-25485262 Msa1320700:intron 40.0%
TGGGGAGGATGAAATTCATA+TGG - chr8_4:25485262-25485281 Msa1320700:intron 40.0%
GGGGAGGATGAAATTCATAT+GGG - chr8_4:25485263-25485282 Msa1320700:intron 40.0%
GGGAGGATGAAATTCATATG+GGG - chr8_4:25485264-25485283 Msa1320700:CDS 40.0%
GTAAACTTGAAAGGGCTTTC+TGG + chr8_4:25485348-25485367 None:intergenic 40.0%
GGCATGCCAAACAAAGTTAT+AGG + chr8_4:25485451-25485470 None:intergenic 40.0%
CATGTTCTTACCATCTGCAT+AGG + chr8_4:25485552-25485571 None:intergenic 40.0%
CAGAAGTTCAGAGTTGTCAT+AGG - chr8_4:25485873-25485892 Msa1320700:intron 40.0%
! TTGGCTGTCCTTATTTGTCT+TGG - chr8_4:25486091-25486110 Msa1320700:intron 40.0%
! TGGCTGTCCTTATTTGTCTT+GGG - chr8_4:25486092-25486111 Msa1320700:intron 40.0%
! CATGAACCAAGAAAGTGTGG+CGG + chr8_4:25484862-25484881 None:intergenic 45.0%
ACTTTATCCTGCAGTTCCTG+TGG - chr8_4:25485049-25485068 Msa1320700:intron 45.0%
GCTGATGACACATTACCAGA+TGG - chr8_4:25485192-25485211 Msa1320700:CDS 45.0%
GTCGTACCAACCTTATGCAA+TGG - chr8_4:25485242-25485261 Msa1320700:intron 45.0%
CGTACCAACCTTATGCAATG+GGG - chr8_4:25485244-25485263 Msa1320700:intron 45.0%
TTCATCCTCCCCATTGCATA+AGG + chr8_4:25485255-25485274 None:intergenic 45.0%
CATGCCACAACTGTGACTTT+AGG - chr8_4:25485465-25485484 Msa1320700:intron 45.0%
TCTGCCTAAAGTCACAGTTG+TGG + chr8_4:25485472-25485491 None:intergenic 45.0%
TTCCAGACTTCCTATGCAGA+TGG - chr8_4:25485539-25485558 Msa1320700:intron 45.0%
TACCATCTGCATAGGAAGTC+TGG + chr8_4:25485544-25485563 None:intergenic 45.0%
! TGTTCTGAGTCATCAGCTTC+TGG - chr8_4:25485948-25485967 Msa1320700:intron 45.0%
! CATGAACCAAGAAAGTGTGG+CGG + chr8_4:25484862-25484881 None:intergenic 45.0%
ACTTTATCCTGCAGTTCCTG+TGG - chr8_4:25485049-25485068 Msa1320700:intron 45.0%
GCTGATGACACATTACCAGA+TGG - chr8_4:25485192-25485211 Msa1320700:CDS 45.0%
GTCGTACCAACCTTATGCAA+TGG - chr8_4:25485242-25485261 Msa1320700:intron 45.0%
CGTACCAACCTTATGCAATG+GGG - chr8_4:25485244-25485263 Msa1320700:intron 45.0%
TTCATCCTCCCCATTGCATA+AGG + chr8_4:25485255-25485274 None:intergenic 45.0%
CATGCCACAACTGTGACTTT+AGG - chr8_4:25485465-25485484 Msa1320700:intron 45.0%
TCTGCCTAAAGTCACAGTTG+TGG + chr8_4:25485472-25485491 None:intergenic 45.0%
TTCCAGACTTCCTATGCAGA+TGG - chr8_4:25485539-25485558 Msa1320700:intron 45.0%
TACCATCTGCATAGGAAGTC+TGG + chr8_4:25485544-25485563 None:intergenic 45.0%
! TGTTCTGAGTCATCAGCTTC+TGG - chr8_4:25485948-25485967 Msa1320700:intron 45.0%
ATCCTGCAGTTCCTGTGGTA+AGG - chr8_4:25485054-25485073 Msa1320700:intron 50.0%
ACCAACCTTATGCAATGGGG+AGG - chr8_4:25485247-25485266 Msa1320700:intron 50.0%
TCCTCCCCATTGCATAAGGT+TGG + chr8_4:25485251-25485270 None:intergenic 50.0%
! CATATGGGGTGATGATGCAG+AGG - chr8_4:25485278-25485297 Msa1320700:CDS 50.0%
CTTCTGCCATTCATCCCCAA+AGG + chr8_4:25485859-25485878 None:intergenic 50.0%
ATCCTGCAGTTCCTGTGGTA+AGG - chr8_4:25485054-25485073 Msa1320700:intron 50.0%
ACCAACCTTATGCAATGGGG+AGG - chr8_4:25485247-25485266 Msa1320700:intron 50.0%
TCCTCCCCATTGCATAAGGT+TGG + chr8_4:25485251-25485270 None:intergenic 50.0%
! CATATGGGGTGATGATGCAG+AGG - chr8_4:25485278-25485297 Msa1320700:CDS 50.0%
CTTCTGCCATTCATCCCCAA+AGG + chr8_4:25485859-25485878 None:intergenic 50.0%
AGCCTTACCACAGGAACTGC+AGG + chr8_4:25485059-25485078 None:intergenic 55.0%
AGCCTTACCACAGGAACTGC+AGG + chr8_4:25485059-25485078 None:intergenic 55.0%
CAACGGCCGCCACACTTTCT+TGG - chr8_4:25484853-25484872 Msa1320700:intron 60.0%
CAACGGCCGCCACACTTTCT+TGG - chr8_4:25484853-25484872 Msa1320700:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 25484428 25486213 25484428 ID=Msa1320700;Name=Msa1320700
chr8_4 mRNA 25484428 25486213 25484428 ID=Msa1320700-mRNA-1;Parent=Msa1320700;Name=Msa1320700-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.11|0|0.4|0.33|0.5|10|0|226
chr8_4 exon 25486208 25486213 25486208 ID=Msa1320700-mRNA-1:exon:8815;Parent=Msa1320700-mRNA-1
chr8_4 exon 25486170 25486175 25486170 ID=Msa1320700-mRNA-1:exon:8814;Parent=Msa1320700-mRNA-1
chr8_4 exon 25485657 25485891 25485657 ID=Msa1320700-mRNA-1:exon:8813;Parent=Msa1320700-mRNA-1
chr8_4 exon 25485571 25485647 25485571 ID=Msa1320700-mRNA-1:exon:8812;Parent=Msa1320700-mRNA-1
chr8_4 exon 25485264 25485467 25485264 ID=Msa1320700-mRNA-1:exon:8811;Parent=Msa1320700-mRNA-1
chr8_4 exon 25485118 25485242 25485118 ID=Msa1320700-mRNA-1:exon:8810;Parent=Msa1320700-mRNA-1
chr8_4 exon 25484886 25484895 25484886 ID=Msa1320700-mRNA-1:exon:8809;Parent=Msa1320700-mRNA-1
chr8_4 exon 25484672 25484677 25484672 ID=Msa1320700-mRNA-1:exon:8808;Parent=Msa1320700-mRNA-1
chr8_4 exon 25484465 25484470 25484465 ID=Msa1320700-mRNA-1:exon:8807;Parent=Msa1320700-mRNA-1
chr8_4 exon 25484428 25484433 25484428 ID=Msa1320700-mRNA-1:exon:8806;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25486208 25486213 25486208 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25486170 25486175 25486170 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25485657 25485891 25485657 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25485571 25485647 25485571 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25485264 25485467 25485264 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25485118 25485242 25485118 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25484886 25484895 25484886 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25484672 25484677 25484672 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25484465 25484470 25484465 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
chr8_4 CDS 25484428 25484433 25484428 ID=Msa1320700-mRNA-1:cds;Parent=Msa1320700-mRNA-1
Gene Sequence

>Msa1320700

ATGGAAGTAAATAGAAAGAGTGGAGATATTCTATCAAGGTTTTTGCAAGTGAAGGAATATGATACAACATACTTAAGAGATATAATTCTGAACTTTGTTATTGCTGGGAAAGACACAACGGCCGCCACACTTTCTTGGTTCATGTATATGCTATGCAAGTATCCTGCAGTACAAGAAAAAGCTTCAGAAGAAGTGAGAGAAGCAACAAACACAAAAACTGTTAGCAGCTGCACTGAGTTTGTGTCATATGAAGCTCTTGAAAAGATGAATTATCTTCATGCAACACTCACGGAGACTCTCAGACTTTATCCTGCAGTTCCTGTGGATGCGAAAATTTGCTTTGCTGATGACACATTACCAGATGGATATAGTGTAAAAAAAGGAGACATGGTGTCGTACCAACCTTATGCAATGGGGAGGATGAAATTCATATGGGGTGATGATGCAGAGGAATTTAGACCTGAAAGATGGCTTGATGAAAATGGCATTTTTCAGCCAGAAAGCCCTTTCAAGTTTACGGCTTTTCAGACATGTAACATTTATTTATCATCATCTCATTACAATAAGCGGTCACATCCCTATAACTTTGTTTGGCATGCCACAACTGTGACTTTAGGCAGAAAATATGAGAGGAGTTTGGAATGTCAGAACACAGTTGGTGAGCTTCTGAGCAAGTCATAA
Protein sequence

>Msa1320700

MEVNRKSGDILSRFLQVKEYDTTYLRDIILNFVIAGKDTTAATLSWFMYMLCKYPAVQEKASEEVREATNTKTVSSCTEFVSYEALEKMNYLHATLTETLRLYPAVPVDAKICFADDTLPDGYSVKKGDMVSYQPYAMGRMKFIWGDDAEEFRPERWLDENGIFQPESPFKFTAFQTCNIYLSSSHYNKRSHPYNFVWHATTVTLGRKYERSLECQNTVGELLSKS*