Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323170 | XP_003628237.1 | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 1.95e-127 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323170 | sp|P46287|RL11_MEDSA | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 2.66e-130 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323170 | G7L8I9 | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 9.33e-128 | 366 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1323170 | Msa1466040 | 0.804031 | 2.625129e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323170 | MtrunA17_Chr8g0355901 | 98.343 | 181 | 3 | 0 | 14 | 194 | 1 | 181 | 1.80e-131 | 366 |
| Msa1323170 | MtrunA17_Chr3g0078591 | 98.333 | 180 | 3 | 0 | 15 | 194 | 3 | 182 | 1.08e-130 | 364 |
| Msa1323170 | MtrunA17_Chr4g0041531 | 97.238 | 181 | 5 | 0 | 14 | 194 | 1 | 181 | 1.37e-130 | 363 |
| Msa1323170 | MtrunA17_Chr3g0078581 | 81.818 | 143 | 26 | 0 | 51 | 193 | 2 | 144 | 4.29e-84 | 245 |
| Msa1323170 | MtrunA17_Chr7g0264261 | 85.714 | 42 | 6 | 0 | 14 | 55 | 1 | 42 | 6.55e-17 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1323170 | AT2G42740.1 | 95.580 | 181 | 8 | 0 | 14 | 194 | 1 | 181 | 5.75e-128 | 357 |
| Msa1323170 | AT4G18730.1 | 95.028 | 181 | 9 | 0 | 14 | 194 | 1 | 181 | 2.67e-127 | 356 |
| Msa1323170 | AT3G58700.1 | 95.028 | 181 | 9 | 0 | 14 | 194 | 1 | 181 | 2.67e-127 | 356 |
| Msa1323170 | AT5G45775.2 | 95.028 | 181 | 9 | 0 | 14 | 194 | 1 | 181 | 2.67e-127 | 356 |
| Msa1323170 | AT5G45775.1 | 95.906 | 171 | 7 | 0 | 24 | 194 | 1 | 171 | 2.81e-121 | 340 |
Find 61 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTTCAACTGGCATTTA+TGG | 0.115122 | 8_4:-31354786 | Msa1323170:CDS |
| TTTAGTGATACTGGTTGTTT+TGG | 0.242495 | 8_4:-31355309 | Msa1323170:CDS |
| CGATACACTGTCCGTTCTTT+TGG | 0.247965 | 8_4:-31355444 | Msa1323170:CDS |
| CGACAAGGCAATGCAGCTTT+TGG | 0.255810 | 8_4:-31355376 | Msa1323170:CDS |
| GCTTGCTATGTGACTGTTAG+AGG | 0.285727 | 8_4:-31355399 | Msa1323170:CDS |
| AATTCAGGAGCATATTGATT+TGG | 0.303290 | 8_4:-31355280 | Msa1323170:CDS |
| TAAAATTACCTTTGCAGCTC+TGG | 0.312435 | 8_4:+31357547 | None:intergenic |
| GAAAAGAAAGCGTACCATTT+GGG | 0.312762 | 8_4:+31357740 | None:intergenic |
| AGGTTGTTGTTGTGCCATTT+GGG | 0.314144 | 8_4:+31357779 | None:intergenic |
| ATTCAGGAGCATATTGATTT+GGG | 0.346376 | 8_4:-31355279 | Msa1323170:CDS |
| CTTTGGAAAACACTGGGGTT+TGG | 0.360701 | 8_4:+31357432 | None:intergenic |
| GAGGTTGTTGTTGTGCCATT+TGG | 0.362192 | 8_4:+31357778 | None:intergenic |
| TTGTTGAGATAACAAAATAA+AGG | 0.373551 | 8_4:+31354530 | None:intergenic |
| TTGTTATCTCAACAATGAAT+TGG | 0.389105 | 8_4:-31354522 | Msa1323170:three_prime_UTR |
| CTCAGGTATGATCCTTCAAC+TGG | 0.406013 | 8_4:-31354795 | Msa1323170:intron |
| AGGCGATTGTTTAGTTACTT+AGG | 0.430278 | 8_4:-31354608 | Msa1323170:exon |
| TTGTTGTGCCATTTGGGGAT+TGG | 0.436016 | 8_4:+31357785 | None:intergenic |
| TTCGTTGTTCTGGAGCGTCC+TGG | 0.441611 | 8_4:-31354753 | Msa1323170:CDS |
| CTTCCGTTTCCAACCCCAAA+TGG | 0.453177 | 8_4:-31357754 | Msa1323170:intron |
| TGAGATAACAAAATAAAGGT+TGG | 0.453682 | 8_4:+31354534 | None:intergenic |
| CTCGTTCTTAATATCTCTGT+TGG | 0.461901 | 8_4:-31357590 | Msa1323170:CDS |
| TGCCATTTGGGGATTGGAAA+CGG | 0.465745 | 8_4:+31357791 | None:intergenic |
| CGTCCTTTGTTACGCGATGT+TGG | 0.468785 | 8_4:+31354685 | None:intergenic |
| TTCCGTTTCCAATCCCCAAA+TGG | 0.478120 | 8_4:-31357793 | Msa1323170:exon |
| ATTCCATAAATGCCAGTTGA+AGG | 0.482057 | 8_4:+31354783 | None:intergenic |
| AATATCTCTGTTGGTGAAAG+TGG | 0.486734 | 8_4:-31357581 | Msa1323170:CDS |
| GGAGAGTGGTTTGAAGGTGA+AGG | 0.491764 | 8_4:-31355355 | Msa1323170:CDS |
| TTCAACTGGCATTTATGGAA+TGG | 0.497930 | 8_4:-31354781 | Msa1323170:CDS |
| CTGAACCTTGATATCCCTCA+TGG | 0.500440 | 8_4:+31357616 | None:intergenic |
| AATAAACCTTTGGAAAACAC+TGG | 0.500470 | 8_4:+31357425 | None:intergenic |
| GTACCATTTGGGGTTGGAAA+CGG | 0.510966 | 8_4:+31357751 | None:intergenic |
| TAAGTAACTAAACAATCGCC+TGG | 0.515662 | 8_4:+31354610 | None:intergenic |
| GGGACGTCGTCGTCGGTGCA+AGG | 0.515936 | 8_4:-31354721 | Msa1323170:CDS |
| TCACACCTTCATATTTCACT+TGG | 0.516049 | 8_4:+31354646 | None:intergenic |
| CGACGTCCCACACGGTAACC+AGG | 0.522429 | 8_4:+31354735 | None:intergenic |
| CAATCGCCTGGGACTTGTTG+AGG | 0.523910 | 8_4:+31354622 | None:intergenic |
| ATAAACCTTTGGAAAACACT+GGG | 0.526168 | 8_4:+31357426 | None:intergenic |
| CGTCGGTGCAAGGCTCGTGT+TGG | 0.539971 | 8_4:-31354711 | Msa1323170:CDS |
| GAACACCATGAGGGATATCA+AGG | 0.552248 | 8_4:-31357621 | Msa1323170:CDS |
| GAGCGTCCTGGTTACCGTGT+GGG | 0.553181 | 8_4:-31354741 | Msa1323170:CDS |
| TTCTTCTAATACCAAAAGAA+CGG | 0.565907 | 8_4:+31355433 | None:intergenic |
| ACCGTGTGGGACGTCGTCGT+CGG | 0.567737 | 8_4:-31354728 | Msa1323170:CDS |
| TCGTCTCACCAGAGCTGCAA+AGG | 0.570040 | 8_4:-31357555 | Msa1323170:intron |
| GAAAGCGTACCATTTGGGGT+TGG | 0.573294 | 8_4:+31357745 | None:intergenic |
| TGGTTCCAAGTGAAATATGA+AGG | 0.576763 | 8_4:-31354651 | Msa1323170:CDS |
| AAAAGAAAGCGTACCATTTG+GGG | 0.586889 | 8_4:+31357741 | None:intergenic |
| TGTGATCCTCAACAAGTCCC+AGG | 0.588999 | 8_4:-31354628 | Msa1323170:CDS |
| GATTGGAAACGGAAGAAGAG+AGG | 0.590715 | 8_4:+31357802 | None:intergenic |
| GGTTGTTGTTGTGCCATTTG+GGG | 0.594987 | 8_4:+31357780 | None:intergenic |
| AATCCAACATCGCGTAACAA+AGG | 0.595227 | 8_4:-31354688 | Msa1323170:CDS |
| TGGGGTTGGAAACGGAAGAG+AGG | 0.621017 | 8_4:+31357759 | None:intergenic |
| CAAAGGACGATGCTATGAAG+TGG | 0.633896 | 8_4:-31354671 | Msa1323170:CDS |
| AAGTAACTAAACAATCGCCT+GGG | 0.633971 | 8_4:+31354611 | None:intergenic |
| GGAGCGTCCTGGTTACCGTG+TGG | 0.638331 | 8_4:-31354742 | Msa1323170:CDS |
| AGAAACTCTCGAACACCATG+AGG | 0.653183 | 8_4:-31357631 | Msa1323170:CDS |
| ACCGACGACGACGTCCCACA+CGG | 0.654712 | 8_4:+31354727 | None:intergenic |
| TGTGACTGTTAGAGGCGACA+AGG | 0.664589 | 8_4:-31355391 | Msa1323170:CDS |
| GGTTGTGATGTGATGTGATG+CGG | 0.677610 | 8_4:+31357823 | None:intergenic |
| TAAACCTTTGGAAAACACTG+GGG | 0.679293 | 8_4:+31357427 | None:intergenic |
| GAAACTCTCGAACACCATGA+GGG | 0.686507 | 8_4:-31357630 | Msa1323170:CDS |
| CAGGTGTTGGAACAACTCAG+TGG | 0.734121 | 8_4:-31357455 | Msa1323170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATATTTTTATATTTA+TGG | - | chr8_4:31356071-31356090 | Msa1323170:intron | 0.0% |
| !!! | TAATTGATTTTAATAGTTTA+GGG | - | chr8_4:31355197-31355216 | Msa1323170:intron | 10.0% |
| !!! | TTTCATTTTTTGTATTTATC+AGG | - | chr8_4:31354784-31354803 | Msa1323170:CDS | 15.0% |
| !! | CAAAATTAAAAATAAACCTT+TGG | + | chr8_4:31354846-31354865 | None:intergenic | 15.0% |
| !! | AACTATTAAAATCAACAAAA+AGG | - | chr8_4:31355088-31355107 | Msa1323170:intron | 15.0% |
| !! | CTAAACTATTAAAATCAATT+AGG | + | chr8_4:31355198-31355217 | None:intergenic | 15.0% |
| !!! | CTAATTGATTTTAATAGTTT+AGG | - | chr8_4:31355196-31355215 | Msa1323170:intron | 15.0% |
| !!! | AAGATTGTTGATAAAAATTA+AGG | - | chr8_4:31355285-31355304 | Msa1323170:CDS | 15.0% |
| !!! | AGATTGTTGATAAAAATTAA+GGG | - | chr8_4:31355286-31355305 | Msa1323170:CDS | 15.0% |
| !! | CAAGACAAAAATAAAAAATT+GGG | + | chr8_4:31355526-31355545 | None:intergenic | 15.0% |
| !! | TCAAGACAAAAATAAAAAAT+TGG | + | chr8_4:31355527-31355546 | None:intergenic | 15.0% |
| !!! | TATTTTTGTCTTGAAAAAAA+TGG | - | chr8_4:31355533-31355552 | Msa1323170:intron | 15.0% |
| !! | TATTTATAAATCATCAACAT+CGG | + | chr8_4:31355684-31355703 | None:intergenic | 15.0% |
| !! | AATTTAGAAAACAAATGTTA+AGG | + | chr8_4:31356042-31356061 | None:intergenic | 15.0% |
| !!! | TATGATTGTTTATAAGTTTT+AGG | - | chr8_4:31356314-31356333 | Msa1323170:intron | 15.0% |
| !! | ATAAAAATAAATTGGTGTAT+AGG | + | chr8_4:31356574-31356593 | None:intergenic | 15.0% |
| !!! | TATTATTTTACCTTGAAAAT+TGG | - | chr8_4:31356591-31356610 | Msa1323170:intron | 15.0% |
| !! | ATCTAATAGATATGAAAATT+TGG | + | chr8_4:31356742-31356761 | None:intergenic | 15.0% |
| !!! | TCAAAGTTTTACATAATTTT+AGG | - | chr8_4:31357229-31357248 | Msa1323170:intron | 15.0% |
| !!! | AAAATTTGAAATTATGTCTT+TGG | - | chr8_4:31357332-31357351 | Msa1323170:intron | 15.0% |
| !! | TACAAAAAATCATAATGATT+CGG | - | chr8_4:31357803-31357822 | Msa1323170:five_prime_UTR | 15.0% |
| !! | TATTCAATATACAATCAACT+AGG | + | chr8_4:31355019-31355038 | None:intergenic | 20.0% |
| !! | AACTATTAAAATCAATTAGG+AGG | + | chr8_4:31355195-31355214 | None:intergenic | 20.0% |
| !!! | ATCACACATTTTATTATTTG+AGG | + | chr8_4:31355585-31355604 | None:intergenic | 20.0% |
| !!! | GATTGTGTTTTTTTACTAAA+AGG | - | chr8_4:31355780-31355799 | Msa1323170:intron | 20.0% |
| !! | TGATTTGAATGAGAATAAAA+AGG | - | chr8_4:31355873-31355892 | Msa1323170:intron | 20.0% |
| !!! | TTCTTCTGGTATTTTAATTT+AGG | + | chr8_4:31355969-31355988 | None:intergenic | 20.0% |
| !!! | TTTTCAAGTCACAATAATTT+GGG | - | chr8_4:31356486-31356505 | Msa1323170:intron | 20.0% |
| !! | TAATGTTAATGATGATAGAA+TGG | - | chr8_4:31356536-31356555 | Msa1323170:intron | 20.0% |
| !!! | TAATCATTTAGTTCTACAAA+AGG | - | chr8_4:31357135-31357154 | Msa1323170:intron | 20.0% |
| !!! | TAATCATTTAGTTCTACAAA+AGG | - | chr8_4:31357135-31357154 | Msa1323170:intron | 20.0% |
| !!! | GTTTTACATAATTTTAGGAT+AGG | - | chr8_4:31357234-31357253 | Msa1323170:intron | 20.0% |
| !! | AACATAAATGATAACAAACT+TGG | + | chr8_4:31357428-31357447 | None:intergenic | 20.0% |
| !! | TTGTTGAGATAACAAAATAA+AGG | + | chr8_4:31357731-31357750 | None:intergenic | 20.0% |
| !! | TTTTTGTATTTATCAGGTGT+TGG | - | chr8_4:31354790-31354809 | Msa1323170:CDS | 25.0% |
| ! | TTCTTCTGGTATTTACATTT+AGG | + | chr8_4:31355375-31355394 | None:intergenic | 25.0% |
| ! | AAAACAACCAAAAACTTTCA+AGG | + | chr8_4:31355401-31355420 | None:intergenic | 25.0% |
| !! | GTTAAATTGCATTGATAGAA+AGG | - | chr8_4:31355464-31355483 | Msa1323170:intron | 25.0% |
| !!! | TTTTTTTTTTTGCTGCACAA+AGG | - | chr8_4:31355721-31355740 | Msa1323170:intron | 25.0% |
| ! | TGAATGAGAATAAAAAGGAA+AGG | - | chr8_4:31355878-31355897 | Msa1323170:intron | 25.0% |
| ! | GAATGAGAATAAAAAGGAAA+GGG | - | chr8_4:31355879-31355898 | Msa1323170:intron | 25.0% |
| !!! | CTGTTGACTCAATTATAAAA+TGG | + | chr8_4:31355907-31355926 | None:intergenic | 25.0% |
| ! | AAAACAACCAAAAACTTTCA+AGG | + | chr8_4:31355401-31355420 | None:intergenic | 25.0% |
| !! | TGCTAAATAATCAAGTTTTC+TGG | - | chr8_4:31356178-31356197 | Msa1323170:intron | 25.0% |
| ! | ATTACCATTCTATTAGATAC+TGG | - | chr8_4:31356206-31356225 | Msa1323170:intron | 25.0% |
| !! | AGAAAATCCTTGAAAACTTT+TGG | - | chr8_4:31356460-31356479 | Msa1323170:intron | 25.0% |
| !! | AAAACAACCAAAAGTTTTCA+AGG | + | chr8_4:31356470-31356489 | None:intergenic | 25.0% |
| !!! | GTTTTCAAGTCACAATAATT+TGG | - | chr8_4:31356485-31356504 | Msa1323170:intron | 25.0% |
| !! | TTTCAAGTCACAATAATTTG+GGG | - | chr8_4:31356487-31356506 | Msa1323170:intron | 25.0% |
| !! | TTTTCATATCTATTAGATGC+TGG | - | chr8_4:31356744-31356763 | Msa1323170:intron | 25.0% |
| ! | TTTCATATCTATTAGATGCT+GGG | - | chr8_4:31356745-31356764 | Msa1323170:intron | 25.0% |
| ! | AAAAACAACAATCAGTTAAC+TGG | + | chr8_4:31356771-31356790 | None:intergenic | 25.0% |
| ! | TTCTTCTAATACCAAAAGAA+CGG | + | chr8_4:31356828-31356847 | None:intergenic | 25.0% |
| !!! | AGAAGAAATTTTAGTGATAC+TGG | - | chr8_4:31356940-31356959 | Msa1323170:intron | 25.0% |
| ! | AAACTATGGTTTAAGCTATT+AGG | - | chr8_4:31357203-31357222 | Msa1323170:intron | 25.0% |
| ! | TGAAATGATAAAACACTCAA+AGG | + | chr8_4:31357361-31357380 | None:intergenic | 25.0% |
| ! | GATGGAATATCATTAGAAAT+CGG | + | chr8_4:31357401-31357420 | None:intergenic | 25.0% |
| ! | ATAAATGATAACAAACTTGG+TGG | + | chr8_4:31357425-31357444 | None:intergenic | 25.0% |
| !! | TTTAACATTGTTTCTTTCTC+AGG | - | chr8_4:31357446-31357465 | Msa1323170:CDS | 25.0% |
| ! | TGAGATAACAAAATAAAGGT+TGG | + | chr8_4:31357727-31357746 | None:intergenic | 25.0% |
| ! | TTGTTATCTCAACAATGAAT+TGG | - | chr8_4:31357736-31357755 | Msa1323170:intron | 25.0% |
| GGAATGAAAATCAGAAAGAA+TGG | + | chr8_4:31354543-31354562 | None:intergenic | 30.0% | |
| AACAACAACAACAACAACAA+AGG | + | chr8_4:31354564-31354583 | None:intergenic | 30.0% | |
| ! | CGAAAAATGCATTTTCTTAC+AGG | - | chr8_4:31354595-31354614 | Msa1323170:three_prime_UTR | 30.0% |
| ! | ATGCATTTTCTTACAGGTTT+CGG | - | chr8_4:31354601-31354620 | Msa1323170:exon | 30.0% |
| ! | ATAAACCTTTGGAAAACACT+GGG | + | chr8_4:31354835-31354854 | None:intergenic | 30.0% |
| ! | AATAAACCTTTGGAAAACAC+TGG | + | chr8_4:31354836-31354855 | None:intergenic | 30.0% |
| ! | TCCTTCAATTTGGTTTACTT+CGG | - | chr8_4:31355131-31355150 | Msa1323170:intron | 30.0% |
| TAATAGTTTAGGGACTAAAC+TGG | - | chr8_4:31355207-31355226 | Msa1323170:intron | 30.0% | |
| TTATATAATGAGTCAACAGC+AGG | - | chr8_4:31355314-31355333 | Msa1323170:CDS | 30.0% | |
| TATATAATGAGTCAACAGCA+GGG | - | chr8_4:31355315-31355334 | Msa1323170:CDS | 30.0% | |
| ! | AGAAGATCCTTGAAAGTTTT+TGG | - | chr8_4:31355391-31355410 | Msa1323170:CDS | 30.0% |
| !! | GTTTTCAAGACACAATTATC+TGG | - | chr8_4:31355416-31355435 | Msa1323170:CDS | 30.0% |
| AATGGTTGAAAACGATAGAA+TGG | - | chr8_4:31355551-31355570 | Msa1323170:intron | 30.0% | |
| !! | CGATTGTTTTGTATATCAGT+AGG | - | chr8_4:31355805-31355824 | Msa1323170:intron | 30.0% |
| TTTATAATTGAGTCAACAGC+AGG | - | chr8_4:31355908-31355927 | Msa1323170:intron | 30.0% | |
| TTATAATTGAGTCAACAGCA+GGG | - | chr8_4:31355909-31355928 | Msa1323170:intron | 30.0% | |
| !!! | ATTTTAATTTAGGCTCCAAG+CGG | + | chr8_4:31355959-31355978 | None:intergenic | 30.0% |
| ! | AGAAGATCCTTGAAAGTTTT+TGG | - | chr8_4:31355391-31355410 | Msa1323170:CDS | 30.0% |
| !! | GTTTTCAAGACACAATTATC+TGG | - | chr8_4:31355416-31355435 | Msa1323170:CDS | 30.0% |
| ACTCAAAACATGTGACATTT+AGG | + | chr8_4:31356124-31356143 | None:intergenic | 30.0% | |
| AACTTGATTATTTAGCATGC+AGG | + | chr8_4:31356175-31356194 | None:intergenic | 30.0% | |
| AGAAGAGGAAAATAAAAGCA+AGG | + | chr8_4:31356243-31356262 | None:intergenic | 30.0% | |
| TTTAACGAGAATTGAACTCA+AGG | - | chr8_4:31356356-31356375 | Msa1323170:intron | 30.0% | |
| TTAACGAGAATTGAACTCAA+GGG | - | chr8_4:31356357-31356376 | Msa1323170:intron | 30.0% | |
| TATTATAATTGAGTCACAGC+AGG | - | chr8_4:31356383-31356402 | Msa1323170:intron | 30.0% | |
| ATTATAATTGAGTCACAGCA+GGG | - | chr8_4:31356384-31356403 | Msa1323170:intron | 30.0% | |
| ! | TTCTTCTGGTATTTTCGTTT+AGG | + | chr8_4:31356444-31356463 | None:intergenic | 30.0% |
| !! | AGTTTTCAAGGATTTTCTTC+TGG | + | chr8_4:31356458-31356477 | None:intergenic | 30.0% |
| AGATATGAAAATTTGGCGAT+CGG | + | chr8_4:31356735-31356754 | None:intergenic | 30.0% | |
| !! | TTTAGTGATACTGGTTGTTT+TGG | - | chr8_4:31356949-31356968 | Msa1323170:intron | 30.0% |
| ! | AATTCAGGAGCATATTGATT+TGG | - | chr8_4:31356978-31356997 | Msa1323170:intron | 30.0% |
| !! | ATTCAGGAGCATATTGATTT+GGG | - | chr8_4:31356979-31356998 | Msa1323170:intron | 30.0% |
| AGTTCTACAAAAGGAAACTA+TGG | - | chr8_4:31357189-31357208 | Msa1323170:intron | 30.0% | |
| ! | AAAAGAAAGCGTACCATTTG+GGG | + | chr8_4:31354520-31354539 | None:intergenic | 35.0% |
| ! | GAAAAGAAAGCGTACCATTT+GGG | + | chr8_4:31354521-31354540 | None:intergenic | 35.0% |
| CTCGTTCTTAATATCTCTGT+TGG | - | chr8_4:31354668-31354687 | Msa1323170:CDS | 35.0% | |
| ! | AATATCTCTGTTGGTGAAAG+TGG | - | chr8_4:31354677-31354696 | Msa1323170:CDS | 35.0% |
| TAAAATTACCTTTGCAGCTC+TGG | + | chr8_4:31354714-31354733 | None:intergenic | 35.0% | |
| ! | TAAACCTTTGGAAAACACTG+GGG | + | chr8_4:31354834-31354853 | None:intergenic | 35.0% |
| !!! | AGGATGAGACGTACATTTTT+TGG | + | chr8_4:31355115-31355134 | None:intergenic | 35.0% |
| TCCGAAGTAAACCAAATTGA+AGG | + | chr8_4:31355135-31355154 | None:intergenic | 35.0% | |
| ! | TTCAATTTGGTTTACTTCGG+AGG | - | chr8_4:31355134-31355153 | Msa1323170:intron | 35.0% |
| ! | TCAATTTGGTTTACTTCGGA+GGG | - | chr8_4:31355135-31355154 | Msa1323170:intron | 35.0% |
| ATATAATGAGTCAACAGCAG+GGG | - | chr8_4:31355316-31355335 | Msa1323170:CDS | 35.0% | |
| ATTTACATTTAGGCTCCAAG+CGG | + | chr8_4:31355365-31355384 | None:intergenic | 35.0% | |
| AACTTTCAAGGATCTTCTTC+TGG | + | chr8_4:31355389-31355408 | None:intergenic | 35.0% | |
| GTGTGATCCATGTTTAATAG+TGG | - | chr8_4:31355598-31355617 | Msa1323170:intron | 35.0% | |
| TATAATTGAGTCAACAGCAG+GGG | - | chr8_4:31355910-31355929 | Msa1323170:intron | 35.0% | |
| AACTTTCAAGGATCTTCTTC+TGG | + | chr8_4:31355389-31355408 | None:intergenic | 35.0% | |
| AGCACCAGTATCTAATAGAA+TGG | + | chr8_4:31356213-31356232 | None:intergenic | 35.0% | |
| GCTGTCAATAAGAAAAGAAG+AGG | + | chr8_4:31356258-31356277 | None:intergenic | 35.0% | |
| ACACTGTACGTGAATATTAC+AGG | - | chr8_4:31356283-31356302 | Msa1323170:intron | 35.0% | |
| TTATAATTGAGTCACAGCAG+GGG | - | chr8_4:31356385-31356404 | Msa1323170:intron | 35.0% | |
| ! | TCATCTTCGACCAATTTTCA+AGG | + | chr8_4:31356604-31356623 | None:intergenic | 35.0% |
| TGAAAATTGGTCGAAGATGA+TGG | - | chr8_4:31356604-31356623 | Msa1323170:intron | 35.0% | |
| !!! | GATACTGGTTGTTTTGGATT+CGG | - | chr8_4:31356955-31356974 | Msa1323170:intron | 35.0% |
| !!! | TTGTTTTGGATTCGGAATTC+AGG | - | chr8_4:31356963-31356982 | Msa1323170:intron | 35.0% |
| TTGTTTAAACCAGTTTCGCA+TGG | + | chr8_4:31357073-31357092 | None:intergenic | 35.0% | |
| GTGTTTATCACAATGCAAGT+TGG | - | chr8_4:31357256-31357275 | Msa1323170:intron | 35.0% | |
| ATTCCATAAATGCCAGTTGA+AGG | + | chr8_4:31357478-31357497 | None:intergenic | 35.0% | |
| TTCAACTGGCATTTATGGAA+TGG | - | chr8_4:31357477-31357496 | Msa1323170:intron | 35.0% | |
| !!! | AATGGACTTTTTCGTTGTTC+TGG | - | chr8_4:31357495-31357514 | Msa1323170:intron | 35.0% |
| TGGTTCCAAGTGAAATATGA+AGG | - | chr8_4:31357607-31357626 | Msa1323170:CDS | 35.0% | |
| TCACACCTTCATATTTCACT+TGG | + | chr8_4:31357615-31357634 | None:intergenic | 35.0% | |
| AAGTAACTAAACAATCGCCT+GGG | + | chr8_4:31357650-31357669 | None:intergenic | 35.0% | |
| TAAGTAACTAAACAATCGCC+TGG | + | chr8_4:31357651-31357670 | None:intergenic | 35.0% | |
| AGGCGATTGTTTAGTTACTT+AGG | - | chr8_4:31357650-31357669 | Msa1323170:intron | 35.0% | |
| !! | AGGTTGTTGTTGTGCCATTT+GGG | + | chr8_4:31354482-31354501 | None:intergenic | 40.0% |
| ! | GGAAAAGAAAGCGTACCATT+TGG | + | chr8_4:31354522-31354541 | None:intergenic | 40.0% |
| GTACGTCTCATCCTTCAATT+TGG | - | chr8_4:31355121-31355140 | Msa1323170:intron | 40.0% | |
| TTCGGAGGGACTAAATTGAA+TGG | - | chr8_4:31355149-31355168 | Msa1323170:intron | 40.0% | |
| TCGGAGGGACTAAATTGAAT+GGG | - | chr8_4:31355150-31355169 | Msa1323170:intron | 40.0% | |
| AATGGGTGGATGCACATTTA+AGG | - | chr8_4:31355167-31355186 | Msa1323170:intron | 40.0% | |
| ATGGGTGGATGCACATTTAA+GGG | - | chr8_4:31355168-31355187 | Msa1323170:intron | 40.0% | |
| CAAGCAGCCACTATTAAACA+TGG | + | chr8_4:31355608-31355627 | None:intergenic | 40.0% | |
| ! | ATTTTCGTTTAGGCTCCAAG+CGG | + | chr8_4:31356434-31356453 | None:intergenic | 40.0% |
| CTATTTCAGCACAAAACACG+TGG | + | chr8_4:31356668-31356687 | None:intergenic | 40.0% | |
| !! | GATAACAAACTTGGTGGTGA+TGG | + | chr8_4:31357419-31357438 | None:intergenic | 40.0% |
| GATCCTTCAACTGGCATTTA+TGG | - | chr8_4:31357472-31357491 | Msa1323170:intron | 40.0% | |
| AATCCAACATCGCGTAACAA+AGG | - | chr8_4:31357570-31357589 | Msa1323170:CDS | 40.0% | |
| GGTTGTGATGTGATGTGATG+CGG | + | chr8_4:31354438-31354457 | None:intergenic | 45.0% | |
| GATTGGAAACGGAAGAAGAG+AGG | + | chr8_4:31354459-31354478 | None:intergenic | 45.0% | |
| TTCCGTTTCCAATCCCCAAA+TGG | - | chr8_4:31354465-31354484 | Msa1323170:three_prime_UTR | 45.0% | |
| ! | TGCCATTTGGGGATTGGAAA+CGG | + | chr8_4:31354470-31354489 | None:intergenic | 45.0% |
| !! | TTGTTGTGCCATTTGGGGAT+TGG | + | chr8_4:31354476-31354495 | None:intergenic | 45.0% |
| !! | GGTTGTTGTTGTGCCATTTG+GGG | + | chr8_4:31354481-31354500 | None:intergenic | 45.0% |
| ! | GAGGTTGTTGTTGTGCCATT+TGG | + | chr8_4:31354483-31354502 | None:intergenic | 45.0% |
| ! | GTACCATTTGGGGTTGGAAA+CGG | + | chr8_4:31354510-31354529 | None:intergenic | 45.0% |
| AGAAACTCTCGAACACCATG+AGG | - | chr8_4:31354627-31354646 | Msa1323170:CDS | 45.0% | |
| GAAACTCTCGAACACCATGA+GGG | - | chr8_4:31354628-31354647 | Msa1323170:CDS | 45.0% | |
| GAACACCATGAGGGATATCA+AGG | - | chr8_4:31354637-31354656 | Msa1323170:CDS | 45.0% | |
| CTGAACCTTGATATCCCTCA+TGG | + | chr8_4:31354645-31354664 | None:intergenic | 45.0% | |
| ! | CTTTGGAAAACACTGGGGTT+TGG | + | chr8_4:31354829-31354848 | None:intergenic | 45.0% |
| ! | CAAACCCCAGTGTTTTCCAA+AGG | - | chr8_4:31354827-31354846 | Msa1323170:intron | 45.0% |
| GAGGGACTAAATTGAATGGG+TGG | - | chr8_4:31355153-31355172 | Msa1323170:intron | 45.0% | |
| TGGCGAGAGAGTGATAGTTT+AGG | - | chr8_4:31355227-31355246 | Msa1323170:intron | 45.0% | |
| GGCGAGAGAGTGATAGTTTA+GGG | - | chr8_4:31355228-31355247 | Msa1323170:intron | 45.0% | |
| ! | CGATACACTGTCCGTTCTTT+TGG | - | chr8_4:31356814-31356833 | Msa1323170:intron | 45.0% |
| !! | GCTTGCTATGTGACTGTTAG+AGG | - | chr8_4:31356859-31356878 | Msa1323170:intron | 45.0% |
| !! | GCTTTTGGAGAGTGGTTTGA+AGG | - | chr8_4:31356897-31356916 | Msa1323170:intron | 45.0% |
| TAGTATGTGCCATGCGAAAC+TGG | - | chr8_4:31357061-31357080 | Msa1323170:intron | 45.0% | |
| CTCAGGTATGATCCTTCAAC+TGG | - | chr8_4:31357463-31357482 | Msa1323170:intron | 45.0% | |
| CAAAGGACGATGCTATGAAG+TGG | - | chr8_4:31357587-31357606 | Msa1323170:CDS | 45.0% | |
| !! | GTAAAATAATAAAAATAAAT+TGG | + | chr8_4:31356582-31356601 | None:intergenic | 5.0% |
| CTTCCGTTTCCAACCCCAAA+TGG | - | chr8_4:31354504-31354523 | Msa1323170:three_prime_UTR | 50.0% | |
| ! | GAAAGCGTACCATTTGGGGT+TGG | + | chr8_4:31354516-31354535 | None:intergenic | 50.0% |
| !! | CAGGTGTTGGAACAACTCAG+TGG | - | chr8_4:31354803-31354822 | Msa1323170:intron | 50.0% |
| ATGACTACTTGACTGCCGCT+TGG | - | chr8_4:31355941-31355960 | Msa1323170:intron | 50.0% | |
| TGTGACTGTTAGAGGCGACA+AGG | - | chr8_4:31356867-31356886 | Msa1323170:intron | 50.0% | |
| ! | CGACAAGGCAATGCAGCTTT+TGG | - | chr8_4:31356882-31356901 | Msa1323170:intron | 50.0% |
| !! | GCAATGCAGCTTTTGGAGAG+TGG | - | chr8_4:31356889-31356908 | Msa1323170:intron | 50.0% |
| GGAGAGTGGTTTGAAGGTGA+AGG | - | chr8_4:31356903-31356922 | Msa1323170:intron | 50.0% | |
| CGTCCTTTGTTACGCGATGT+TGG | + | chr8_4:31357576-31357595 | None:intergenic | 50.0% | |
| TGTGATCCTCAACAAGTCCC+AGG | - | chr8_4:31357630-31357649 | Msa1323170:CDS | 50.0% | |
| TGGGGTTGGAAACGGAAGAG+AGG | + | chr8_4:31354502-31354521 | None:intergenic | 55.0% | |
| TCGTCTCACCAGAGCTGCAA+AGG | - | chr8_4:31354703-31354722 | Msa1323170:CDS | 55.0% | |
| ATGACTACCTGACTGCCGCT+TGG | - | chr8_4:31355347-31355366 | Msa1323170:CDS | 55.0% | |
| !! | TTCGTTGTTCTGGAGCGTCC+TGG | - | chr8_4:31357505-31357524 | Msa1323170:intron | 55.0% |
| !! | CAATCGCCTGGGACTTGTTG+AGG | + | chr8_4:31357639-31357658 | None:intergenic | 55.0% |
| TTAGGCTCCAAGCGGCAGTC+AGG | + | chr8_4:31355357-31355376 | None:intergenic | 60.0% | |
| ATGACTGCCTGACTGCCGCT+TGG | - | chr8_4:31356416-31356435 | Msa1323170:intron | 60.0% | |
| TTAGGCTCCAAGCGGCAGTC+AGG | + | chr8_4:31355357-31355376 | None:intergenic | 60.0% | |
| GAGCGTCCTGGTTACCGTGT+GGG | - | chr8_4:31357517-31357536 | Msa1323170:intron | 60.0% | |
| ! | GGAGCGTCCTGGTTACCGTG+TGG | - | chr8_4:31357516-31357535 | Msa1323170:intron | 65.0% |
| CGACGTCCCACACGGTAACC+AGG | + | chr8_4:31357526-31357545 | None:intergenic | 65.0% | |
| ACCGTGTGGGACGTCGTCGT+CGG | - | chr8_4:31357530-31357549 | Msa1323170:intron | 65.0% | |
| ACCGACGACGACGTCCCACA+CGG | + | chr8_4:31357534-31357553 | None:intergenic | 65.0% | |
| CGTCGGTGCAAGGCTCGTGT+TGG | - | chr8_4:31357547-31357566 | Msa1323170:intron | 65.0% | |
| GGGACGTCGTCGTCGGTGCA+AGG | - | chr8_4:31357537-31357556 | Msa1323170:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 31354425 | 31357855 | 31354425 | ID=Msa1323170;Name=Msa1323170 |
| chr8_4 | mRNA | 31354425 | 31357855 | 31354425 | ID=Msa1323170-mRNA-1;Parent=Msa1323170;Name=Msa1323170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=59|1|1|1|1|1|5|192|194 |
| chr8_4 | exon | 31354425 | 31354812 | 31354425 | ID=Msa1323170-mRNA-1:exon:10209;Parent=Msa1323170-mRNA-1 |
| chr8_4 | exon | 31355273 | 31355468 | 31355273 | ID=Msa1323170-mRNA-1:exon:10208;Parent=Msa1323170-mRNA-1 |
| chr8_4 | exon | 31357432 | 31357474 | 31357432 | ID=Msa1323170-mRNA-1:exon:10207;Parent=Msa1323170-mRNA-1 |
| chr8_4 | exon | 31357556 | 31357663 | 31357556 | ID=Msa1323170-mRNA-1:exon:10206;Parent=Msa1323170-mRNA-1 |
| chr8_4 | exon | 31357755 | 31357855 | 31357755 | ID=Msa1323170-mRNA-1:exon:10205;Parent=Msa1323170-mRNA-1 |
| chr8_4 | five_prime_UTR | 31357797 | 31357855 | 31357797 | ID=Msa1323170-mRNA-1:five_prime_utr;Parent=Msa1323170-mRNA-1 |
| chr8_4 | CDS | 31357755 | 31357796 | 31357755 | ID=Msa1323170-mRNA-1:cds;Parent=Msa1323170-mRNA-1 |
| chr8_4 | CDS | 31357556 | 31357663 | 31357556 | ID=Msa1323170-mRNA-1:cds;Parent=Msa1323170-mRNA-1 |
| chr8_4 | CDS | 31357432 | 31357474 | 31357432 | ID=Msa1323170-mRNA-1:cds;Parent=Msa1323170-mRNA-1 |
| chr8_4 | CDS | 31355273 | 31355468 | 31355273 | ID=Msa1323170-mRNA-1:cds;Parent=Msa1323170-mRNA-1 |
| chr8_4 | CDS | 31354617 | 31354812 | 31354617 | ID=Msa1323170-mRNA-1:cds;Parent=Msa1323170-mRNA-1 |
| chr8_4 | three_prime_UTR | 31354425 | 31354616 | 31354425 | ID=Msa1323170-mRNA-1:three_prime_utr;Parent=Msa1323170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
