AlfalfaGEDB | Msa1324490

M. sativa cultivar zhongmu-4 / Msa1324490

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324490	sp\|Q9LW83\|CE101_ARATH	39.162	835	377	26	32	777	25	817	1.06e-160	492

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324490	G7L9B8	90.621	821	62	3	1	821	1	806	0.0	1549

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1245280	Msa1324490	0.858834	6.275630e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1324490	MtrunA17_Chr8g0357961	90.621	821	62	3	1	821	1	806	1549
Msa1324490	MtrunA17_Chr8g0357991	88.335	823	78	5	1	821	1	807	1485
Msa1324490	MtrunA17_Chr8g0358071	76.202	832	153	10	1	822	2	798	1298
Msa1324490	MtrunA17_Chr8g0358031	76.566	798	162	6	1	791	2	781	1258
Msa1324490	MtrunA17_Chr8g0358081	74.548	829	158	11	1	822	1	783	1233
Msa1324490	MtrunA17_Chr8g0358121	76.971	799	141	9	1	791	1	764	1220
Msa1324490	MtrunA17_Chr8g0358101	73.798	832	162	12	1	822	1	786	1213
Msa1324490	MtrunA17_Chr8g0357881	73.558	832	171	10	1	822	7	799	1210
Msa1324490	MtrunA17_Chr8g0357981	77.560	664	110	6	161	822	1	627	1039
Msa1324490	MtrunA17_Chr8g0357691	55.852	786	300	14	10	779	14	768	820

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324490	AT3G16030.1	39.162	835	377	26	32	777	25	817	1.08e-161	492
Msa1324490	AT3G16030.6	39.386	782	369	21	74	777	84	838	8.63e-160	488
Msa1324490	AT1G11330.2	37.810	767	402	17	74	790	83	824	2.10e-155	475
Msa1324490	AT1G11330.1	37.647	765	404	16	74	790	83	822	4.56e-155	474
Msa1324490	AT3G16030.2	40.084	711	326	18	143	777	8	694	6.80e-151	460
Msa1324490	AT4G21390.1	37.160	845	426	27	11	784	13	823	1.52e-147	455
Msa1324490	AT1G61610.1	36.836	828	439	22	29	796	27	830	2.73e-147	454
Msa1324490	AT1G11300.1	37.103	787	396	26	74	806	76	817	8.47e-146	449
Msa1324490	AT1G11340.1	37.662	770	396	24	73	785	67	809	4.57e-145	448
Msa1324490	AT1G65790.1	37.632	760	413	21	75	789	79	822	8.78e-145	447

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Find 157 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAAGAAACAAATTGTT+TGG	0.308610	8_4:+34686345	Msa1324490:CDS
AAATCACCTCCGAATTCCCA+TGG	0.639305	8_4:+34687517	Msa1324490:CDS
AAATTCCTTCGATTATGTTC+AGG	0.450115	8_4:-34688933	None:intergenic
AAATTGTAGGGAACCTGGTG+AGG	0.588610	8_4:+34687270	Msa1324490:CDS
AAATTGTTTGGATATACTTA+TGG	0.310580	8_4:+34686357	Msa1324490:CDS
AACAGGACATAATTGGTCAT+TGG	0.393190	8_4:+34686835	Msa1324490:CDS
AACTGCTGAATATATGTCAA+TGG	0.438952	8_4:-34686579	None:intergenic
AAGAAAAGTAAAAGGAAGCA+GGG	0.491639	8_4:+34687877	Msa1324490:CDS
AAGAAGGTGAATTGAACATA+AGG	0.453064	8_4:+34686918	Msa1324490:CDS
AAGATGAGAAGTTTATACGA+TGG	0.633455	8_4:+34687080	Msa1324490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGCTGAATATATGTCAAT+GGG	-	chr8_4:34686581-34686600	None:intergenic	30.0%
AACTGCTGAATATATGTCAA+TGG	-	chr8_4:34686582-34686601	None:intergenic	30.0%
GGCGAATAATAAATACTAAC+TGG	-	chr8_4:34686659-34686678	None:intergenic	30.0%
TGATTATCCAACAGATAGTT+TGG	+	chr8_4:34686781-34686800	Msa1324490:CDS	30.0%
ATCGAAAAACAGGACATAAT+TGG	+	chr8_4:34686828-34686847	Msa1324490:CDS	30.0%
AAGAAGGTGAATTGAACATA+AGG	+	chr8_4:34686918-34686937	Msa1324490:CDS	30.0%
GAATTGAACATAAGGAAAAG+CGG	+	chr8_4:34686926-34686945	Msa1324490:CDS	30.0%
TATATACTTTGAACTTTCGC+TGG	-	chr8_4:34687007-34687026	None:intergenic	30.0%
GTACATTATTGTGTCTAACA+AGG	+	chr8_4:34687030-34687049	Msa1324490:CDS	30.0%
AAGATGAGAAGTTTATACGA+TGG	+	chr8_4:34687080-34687099	Msa1324490:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	34686234	34690023	34686234	ID=Msa1324490;Name=Msa1324490
chr8_4	mRNA	34686234	34690023	34686234	ID=Msa1324490-mRNA-1;Parent=Msa1324490;Name=Msa1324490-mRNA-1;_AED=0.39;_eAED=0.39;_QI=98\|1\|1\|1\|1\|1\|7\|225\|822
chr8_4	exon	34686234	34687538	34686234	ID=Msa1324490-mRNA-1:exon:11028;Parent=Msa1324490-mRNA-1
chr8_4	exon	34687664	34687777	34687664	ID=Msa1324490-mRNA-1:exon:11029;Parent=Msa1324490-mRNA-1
chr8_4	exon	34687875	34688071	34687875	ID=Msa1324490-mRNA-1:exon:11030;Parent=Msa1324490-mRNA-1
chr8_4	exon	34688380	34688590	34688380	ID=Msa1324490-mRNA-1:exon:11031;Parent=Msa1324490-mRNA-1
chr8_4	exon	34688896	34689133	34688896	ID=Msa1324490-mRNA-1:exon:11032;Parent=Msa1324490-mRNA-1
chr8_4	exon	34689220	34689370	34689220	ID=Msa1324490-mRNA-1:exon:11033;Parent=Msa1324490-mRNA-1
chr8_4	exon	34689448	34690023	34689448	ID=Msa1324490-mRNA-1:exon:11034;Parent=Msa1324490-mRNA-1
chr8_4	five_prime_UTR	34686234	34686331	34686234	ID=Msa1324490-mRNA-1:five_prime_utr;Parent=Msa1324490-mRNA-1
chr8_4	CDS	34686332	34687538	34686332	ID=Msa1324490-mRNA-1:cds;Parent=Msa1324490-mRNA-1
chr8_4	CDS	34687664	34687777	34687664	ID=Msa1324490-mRNA-1:cds;Parent=Msa1324490-mRNA-1
chr8_4	CDS	34687875	34688071	34687875	ID=Msa1324490-mRNA-1:cds;Parent=Msa1324490-mRNA-1
chr8_4	CDS	34688380	34688590	34688380	ID=Msa1324490-mRNA-1:cds;Parent=Msa1324490-mRNA-1
chr8_4	CDS	34688896	34689133	34688896	ID=Msa1324490-mRNA-1:cds;Parent=Msa1324490-mRNA-1
chr8_4	CDS	34689220	34689370	34689220	ID=Msa1324490-mRNA-1:cds;Parent=Msa1324490-mRNA-1
chr8_4	CDS	34689448	34689798	34689448	ID=Msa1324490-mRNA-1:cds;Parent=Msa1324490-mRNA-1
chr8_4	three_prime_UTR	34689799	34690023	34689799	ID=Msa1324490-mRNA-1:three_prime_utr;Parent=Msa1324490-mRNA-1

Gene Sequence

>Msa1324490

ATGCTAAGCTTTAAAATAAAGAAACAAATTGTTTGGATATACTTATGGTTATGGTGGAGTACTACTAGTAGTATTTGTGTTAAAGCAACAAATGATAGTTTGAAGCCAGGTGATACATTGAATTCCAAATCCAAGCTGTGTTCTAAACAAGGCAAGTTTTGTTTGTATTTTGATAGCGAAGAAGCTCACTTGGTTATAAGTAGTGGTGTTGACGGCGCTGTAGTGTGGATGTACGATAGAAATCAACCCATTGACATATATTCAGCAGTTCTATCTTTAGACTACTCTGGTGTGCTCAAAATAGAATTTCAAAATAGGAATCTACCAGTTAGTATTTATTATTCGCCTCAACCAACCAACGACACTGTGGCCACTATATTAGATACCGGTAACTTTGTGCTTCAACAACTTCACCCAAACGGGACAAAGAGTATACTATGGCAGAGTTTTGATTATCCAACAGATAGTTTGGTCCCAACGATGAAGTTAGGCGTTAATCGAAAAACAGGACATAATTGGTCATTGGTTTCACGGTTGGCTCATTCGCTACCAACTCCAGGTGAACTTAGTCTTGAATGGGAACCAAAAGAAGGTGAATTGAACATAAGGAAAAGCGGCAAAGTGCATTGGAAAAGTGGAAAACTTAAAAGTAATGGAATATTCGAGAACATTCCAGCGAAAGTTCAAAGTATATATCGGTACATTATTGTGTCTAACAAGGATGAAGATTCTTTTGCTTTCGAAGTTAAAGATGAGAAGTTTATACGATGGTTCATATCCCCGAGGGGGAGGTTAATAAGTGATGCTGGAAGCACTGCTAATGCAAGTGCAGACATGTGTTATGGATATAAAAGTGATGAAGGGTGCCAAGTTGCAAATGCAGACATGTGTTATGGATATAATAGCGACGGAGGGTGCCAAAAATGGGAGGAAATACCAAATTGTAGGGAACCTGGTGAGGTTTTTCGGAAAAAGGTGGGAAGACCGAATAAAGACAATGCAACGACAGATGAACCTGCTAATGGTTACGATGATTGCAAGATGAGATGTTGGAGAAATTGTGATTGCTATGGATTCGAAGAATTATATAGTAATTTTACTGGATGTATATACTATTCTTGGAATTCGACACAAGACGTTGATTTGGAGATAAAGAATAACTTTTACGCCTTGGTAAAGCCAACAAAATCACCTCCGAATTCCCATGTCAATGCAGGTAAAAAGAGGATATGGATAGGTGCTGCAATTGCAGCTGCTTTACTCATATTATGCTCACTTATTCTATGCCTAGCAAAAAAGAAACAAAAATATGCACTTAAAGATAAGAAAAGTAAAAGGAAGCAGGGTAAGAGCATTGATTTGGCGGATTCCAATAAATCCTATGATATCAAAGATCTTGAGGATGAGTTCAAAGGACATGATATAAAAGTTTTTAGCTATAAATCGATTTTGGAAGCAACTATGGACTTTTCACCTGAAAACAAGTTAGGACAGGGAGGCTACGGACCCGTTTATAAGGGAATCTTGGCAACAGGACAAGAAGTTGCCGTAAAAAGGCTTTCAAAAACATCTGGACAAGGAATTGTCGAATTCAAAAATGAATTGGTATTGATATGTGAACTTCAACACACAAATCTTGTACAACTACTTGGTTGTTGCGTTCATGAAGAAGAAAGGATTCTAATTTACGAATATATGCCAAACAAAAGCCTGGATTTCTATATATTCGATTGTACAAGAAAAAAGTTACTAGACTGGAAGAAGCGCCTGAACATAATCGAAGGAATTTCTCAAGGATTACTCTATCTTCATAAGTATTCAAGACTCAAAATCATTCATAGAGACTTGAAGGCTAGCAACATACTTCTTGATGAGAATATGAACGCAAAAATTTCTGATTTCGGTATGGCAAGAATGTTCACACAACAGGAATCCATAGTAAATACCAACAGGATTGTTGGGACATATGGATACATGTCTCCAGAATATGCAATGGAAGGAATTTGTTCAACAAAGTCTGATGTTTATAGCTTTGGAGTGTTGCTTCTTGAAATTATTTGTGGAAGAAAAAACAATAGCTTTTATGATGTTGATCGCCCAATAAACCTAATAGGACATGCATGGGAGCTATGGAATGATGGTGAGTATCTACAGTTACTGGATCCAACATTAAGTGACACATTTGTTCCCGATGAAGTGCAAAGGTGCATTCACGTTGGTCTCTTATGTGTACAACAATATGCTAACGATCGACCTACGATGTCCGATGTTATATCAATGTTAACAAACAAATATGAACTCACAACCTTACCAAGAAGACCGGCATTCTATGTTAGAAGAGAGACCTTTGACGAGGAAACAACTTCTAAAGGGCCAGACACTACTGCAGAAATTACATCTCACATCGACACCGACACCTATTCTACGACAGCAATTTCTACCTCATATGAATTAGAAGGGAAAATATAA

Protein sequence

>Msa1324490

MLSFKIKKQIVWIYLWLWWSTTSSICVKATNDSLKPGDTLNSKSKLCSKQGKFCLYFDSEEAHLVISSGVDGAVVWMYDRNQPIDIYSAVLSLDYSGVLKIEFQNRNLPVSIYYSPQPTNDTVATILDTGNFVLQQLHPNGTKSILWQSFDYPTDSLVPTMKLGVNRKTGHNWSLVSRLAHSLPTPGELSLEWEPKEGELNIRKSGKVHWKSGKLKSNGIFENIPAKVQSIYRYIIVSNKDEDSFAFEVKDEKFIRWFISPRGRLISDAGSTANASADMCYGYKSDEGCQVANADMCYGYNSDGGCQKWEEIPNCREPGEVFRKKVGRPNKDNATTDEPANGYDDCKMRCWRNCDCYGFEELYSNFTGCIYYSWNSTQDVDLEIKNNFYALVKPTKSPPNSHVNAGKKRIWIGAAIAAALLILCSLILCLAKKKQKYALKDKKSKRKQGKSIDLADSNKSYDIKDLEDEFKGHDIKVFSYKSILEATMDFSPENKLGQGGYGPVYKGILATGQEVAVKRLSKTSGQGIVEFKNELVLICELQHTNLVQLLGCCVHEEERILIYEYMPNKSLDFYIFDCTRKKLLDWKKRLNIIEGISQGLLYLHKYSRLKIIHRDLKASNILLDENMNAKISDFGMARMFTQQESIVNTNRIVGTYGYMSPEYAMEGICSTKSDVYSFGVLLLEIICGRKNNSFYDVDRPINLIGHAWELWNDGEYLQLLDPTLSDTFVPDEVQRCIHVGLLCVQQYANDRPTMSDVISMLTNKYELTTLPRRPAFYVRRETFDEETTSKGPDTTAEITSHIDTDTYSTTAISTSYELEGKI*