AlfalfaGEDB | Msa1324560

M. sativa cultivar zhongmu-4 / Msa1324560

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324560	RHN40731.1	92.806	139	10	0	19	157	489	627	1.06e-85	273

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324560	sp\|Q9LDT0\|CRK30_ARATH	44.286	140	76	2	19	157	532	670	2.01e-34	130

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324560	A0A396GKM1	92.806	139	10	0	19	157	489	627	5.04e-86	273

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1271290	Msa1324560	0.800554	1.365033e-48	-8.615850e-47
Msa1324550	Msa1324560	0.804184	2.439629e-49	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324560	MtrunA17_Chr8g0357981	92.806	139	10	0	19	157	489	627	9.71e-90	273
Msa1324560	MtrunA17_Chr8g0357781	87.143	140	17	1	19	157	15	154	1.65e-88	254
Msa1324560	MtrunA17_Chr8g0357881	87.857	140	16	1	19	157	660	799	5.12e-82	257
Msa1324560	MtrunA17_Chr8g0358141	86.429	140	17	2	19	157	262	400	2.55e-81	245
Msa1324560	MtrunA17_Chr8g0357961	86.331	139	18	1	19	156	668	806	8.66e-81	254
Msa1324560	MtrunA17_Chr8g0357991	87.050	139	17	1	19	156	669	807	9.87e-81	254
Msa1324560	MtrunA17_Chr8g0358071	87.857	140	15	2	19	157	660	798	2.37e-79	250
Msa1324560	MtrunA17_Chr8g0358081	85.714	140	18	2	19	157	645	783	9.87e-79	248
Msa1324560	MtrunA17_Chr8g0358061	85.714	140	19	1	19	157	240	379	3.19e-78	236
Msa1324560	MtrunA17_Chr8g0358101	85.000	140	19	2	19	157	648	786	9.51e-77	243

Showing 1 to 10 of 271 entries

Previous1 2 3 4 5…28Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1324560	AT4G11460.2	44.286	140	76	2	19	157	454	592	1.82e-35	129
Msa1324560	AT4G11460.3	44.286	140	76	2	19	157	529	667	1.97e-35	130
Msa1324560	AT4G11460.1	44.286	140	76	2	19	157	532	670	2.04e-35	130
Msa1324560	AT4G23150.1	52.336	107	51	0	19	125	519	625	1.96e-33	124
Msa1324560	AT1G11330.1	43.478	138	76	1	19	156	705	840	2.01e-32	121
Msa1324560	AT1G11330.2	43.478	138	76	1	19	156	707	842	2.05e-32	121
Msa1324560	AT4G11470.2	51.852	108	51	1	19	125	527	634	3.36e-32	120
Msa1324560	AT4G11470.1	51.852	108	51	1	19	125	522	629	3.67e-32	120
Msa1324560	AT4G23240.2	49.074	108	54	1	19	125	211	318	6.52e-32	117
Msa1324560	AT1G11350.1	44.203	138	75	1	19	156	695	830	9.34e-32	119

Showing 1 to 10 of 233 entries

Previous1 2 3 4 5…24Next

Find 27 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTCTGACGTCTATAGCTT+TGG	0.456291	8_4:+34829819	Msa1324560:intron
ACAAATGTGTCGTTTAATGT+TGG	0.477509	8_4:-34830044	None:intergenic
ACATAAAATGCCGGTCTTCT+TGG	0.282840	8_4:-34830191	None:intergenic
ATGCACCTTTGCACTTCATC+AGG	0.422247	8_4:-34830068	None:intergenic
ATTAATAGGCATGGGAGTTA+TGG	0.395167	8_4:+34829991	Msa1324560:intron
ATTTCTACTTCATGTGAAGA+AGG	0.479260	8_4:+34830284	Msa1324560:CDS
CACAAACTTGCCAAGAAGAC+CGG	0.505670	8_4:+34830181	Msa1324560:CDS
CTAACTCGCATATGTGAGTA+AGG	0.438263	8_4:-34828779	None:intergenic
CTCACATATGCGAGTTAGGG+CGG	0.575011	8_4:+34828784	Msa1324560:CDS
CTTACTCACATATGCGAGTT+AGG	0.259237	8_4:+34828780	Msa1324560:CDS

Showing 1 to 10 of 27 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTCCTTGAGATTATTATGC+TGG	+	chr8_4:34828932-34828951	Msa1324560:intron	30.0%
TTCCTTGAGATTATTATGCT+GGG	+	chr8_4:34828933-34828952	Msa1324560:intron	30.0%
TATTTAGCTACACATCATCA+TGG	-	chr8_4:34829135-34829154	None:intergenic	30.0%
TAATTATATCTTTGGCACGA+AGG	+	chr8_4:34829503-34829522	Msa1324560:intron	30.0%
TAGAAATCGTATGGATCATT+AGG	+	chr8_4:34829565-34829584	Msa1324560:intron	30.0%
GATATAACATCAGACATTGT+AGG	-	chr8_4:34830137-34830156	None:intergenic	30.0%
TCTCTTCTAACATAAAATGC+CGG	-	chr8_4:34830203-34830222	None:intergenic	30.0%
TAGAAGAGAAATATTTGAGG+GGG	+	chr8_4:34830214-34830233	Msa1324560:CDS	30.0%
ATTTCTACTTCATGTGAAGA+AGG	+	chr8_4:34830284-34830303	Msa1324560:CDS	30.0%
ATTCCTTGAGATTATTATGC+TGG	+	chr8_4:34828932-34828951	Msa1324560:intron	30.0%

Showing 1 to 10 of 170 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	34828752	34830316	34828752	ID=Msa1324560;Name=Msa1324560
chr8_4	mRNA	34828752	34830316	34828752	ID=Msa1324560-mRNA-1;Parent=Msa1324560;Name=Msa1324560-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0.5\|0\|0.66\|1\|1\|3\|0\|157
chr8_4	exon	34828752	34828805	34828752	ID=Msa1324560-mRNA-1:exon:11071;Parent=Msa1324560-mRNA-1
chr8_4	exon	34829822	34829923	34829822	ID=Msa1324560-mRNA-1:exon:11072;Parent=Msa1324560-mRNA-1
chr8_4	exon	34829999	34830316	34829999	ID=Msa1324560-mRNA-1:exon:11073;Parent=Msa1324560-mRNA-1
chr8_4	CDS	34828752	34828805	34828752	ID=Msa1324560-mRNA-1:cds;Parent=Msa1324560-mRNA-1
chr8_4	CDS	34829822	34829923	34829822	ID=Msa1324560-mRNA-1:cds;Parent=Msa1324560-mRNA-1
chr8_4	CDS	34829999	34830316	34829999	ID=Msa1324560-mRNA-1:cds;Parent=Msa1324560-mRNA-1

Gene Sequence

>Msa1324560

ATGCGAGCAGCTCGCATCTGCGAGCTCCCTTACTCACATATGCGAGTTAGGGCGTCTGACGTCTATAGCTTTGGAGTGTTGCTTCTTGAAATCGTTTCTGGGAGAAAAAACAATAGCTTCTTTGATGTTGATCGCCCACAAAATCTAATAGGACATGCATGGGAGTTATGGAATGATGGTGAGTATCTAAAGCTAATGGATCCAACATTAAACGACACATTTGTTCCTGATGAAGTGCAAAGGTGCATTCATGTTGGTCTCTTATGTGTAGAGCATTATGCAATTGATCGACCTACAATGTCTGATGTTATATCTATGTTAACAAACAAATATGAACTCACAAACTTGCCAAGAAGACCGGCATTTTATGTTAGAAGAGAAATATTTGAGGGGGAAACATCTTCCAAAGGGCAAGACACCGACACATATTCTACGACAGCAATTTCTACTTCATGTGAAGAAGGCAAAATATAA

Protein sequence

>Msa1324560

MRAARICELPYSHMRVRASDVYSFGVLLLEIVSGRKNNSFFDVDRPQNLIGHAWELWNDGEYLKLMDPTLNDTFVPDEVQRCIHVGLLCVEHYAIDRPTMSDVISMLTNKYELTNLPRRPAFYVRREIFEGETSSKGQDTDTYSTTAISTSCEEGKI*