AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1328580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328580 MtrunA17_Chr8g0372101 95.699 465 12 1 7 471 101 557 0.0 887
Msa1328580 MtrunA17_Chr1g0153161 34.066 182 77 4 7 183 101 244 2.62e-18 87.0
Msa1328580 MtrunA17_Chr1g0153161 45.000 100 52 2 375 471 307 406 4.80e-18 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328580 AT5G66270.1 29.231 455 210 16 7 452 76 427 1.14e-29 121
Msa1328580 AT3G51180.1 27.601 471 245 13 7 450 94 495 1.60e-26 112
Msa1328580 AT1G19860.1 38.547 179 70 6 7 178 95 240 1.82e-23 102
Msa1328580 AT1G19860.1 35.526 152 77 7 340 471 260 410 8.61e-15 76.6
Msa1328580 AT1G19860.2 38.547 179 70 6 7 178 97 242 2.10e-23 102
Msa1328580 AT1G19860.2 35.526 152 77 7 340 471 262 412 7.39e-15 76.6

Find 194 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCACATTCCTAAGATAAAA+TGG 0.151328 8_4:+46441400 Msa1328580:exon
TGGGATGAAGAAAGGGAATT+AGG 0.179994 8_4:+46440020 Msa1328580:five_prime_UTR
ACACACTAACTGTCGGTTTA+AGG 0.187384 8_4:-46443354 None:intergenic
AGATTTAAGTTGTGAAATTT+AGG 0.188731 8_4:+46443095 Msa1328580:exon
GCCTCAGCCAGATTCATTTC+TGG 0.195716 8_4:+46442638 Msa1328580:CDS
TCAGTTTCCATGTTCTTTAC+AGG 0.225369 8_4:-46443177 None:intergenic
CCAGATTCATTTCTGGCATC+TGG 0.226020 8_4:+46442645 Msa1328580:CDS
ATGTAGCCCTTCTGTTTCTT+TGG 0.231921 8_4:+46441801 Msa1328580:intron
TCCATGGTTACACTCACTTC+TGG 0.273989 8_4:+46442246 Msa1328580:CDS
CACTCGATGTGGCAGCTTCT+AGG 0.275678 8_4:+46442310 Msa1328580:CDS
CTGGAATTGGTGGCCAGTTT+TGG 0.309803 8_4:+46443270 Msa1328580:three_prime_UTR
ACAGTTCCATTGCCTCCTTC+TGG 0.313266 8_4:+46442714 Msa1328580:CDS
AAGAGGGCATTCTCTGATTA+TGG 0.315359 8_4:+46439849 Msa1328580:five_prime_UTR
GATGAAACTGATGGAATTGC+AGG 0.327045 8_4:-46442372 None:intergenic
GGCACAAAACATCGTTGTTT+TGG 0.327550 8_4:+46439915 Msa1328580:five_prime_UTR
AGGAGGAATGGCAGAGGGTC+GGG 0.328507 8_4:-46441700 None:intergenic
TATGTGCCAATTTCATATCT+TGG 0.331995 8_4:-46442917 None:intergenic
TTCACTGCTGCTGCTAATTT+AGG 0.340907 8_4:-46441910 None:intergenic
ATCATAAATAATGGCATTAA+CGG 0.345384 8_4:-46439955 None:intergenic
TAACTTCCAAGATATGAAAT+TGG 0.355285 8_4:+46442911 Msa1328580:CDS
TTGTGGTTGTGGTCTGGAAT+TGG 0.359048 8_4:+46443257 Msa1328580:three_prime_UTR
CAAGACTGTCTTGTAAATTC+AGG 0.362078 8_4:-46441272 None:intergenic
TGTTGGGGATTTGAAGTTTG+TGG 0.362256 8_4:+46440000 Msa1328580:five_prime_UTR
AAGCCTTATCAAACAAGTTC+AGG 0.368435 8_4:+46442783 Msa1328580:CDS
GTGCTCACCTGTGACCATTC+AGG 0.371261 8_4:-46440131 None:intergenic
ATGATTGTGGGTCCTACAAT+TGG 0.371536 8_4:+46443294 Msa1328580:three_prime_UTR
GGAATTACGGTCTGAACTAT+TGG 0.371884 8_4:-46441989 None:intergenic
TCCTCCTCGATGGGAATGAT+TGG 0.373518 8_4:-46441868 None:intergenic
AGCAGGGGTATCTTCTAGTT+TGG 0.377653 8_4:+46442050 Msa1328580:CDS
AGCCCACGCATACTGAGTTT+TGG 0.378102 8_4:+46439894 Msa1328580:five_prime_UTR
ATATATTTCATCATAAATAA+TGG 0.381578 8_4:-46439964 None:intergenic
AATTGAACCTTTGATTGGTT+AGG 0.381590 8_4:-46441375 None:intergenic
GATATTGGTTTACTGGATAC+TGG 0.382154 8_4:-46442510 None:intergenic
AATGGAGCTGACGCAGTTGC+TGG 0.385981 8_4:-46442480 None:intergenic
ATTGAATACGATGGAATTGC+AGG 0.387770 8_4:-46442435 None:intergenic
ACCCACAATCATACCAAAAC+TGG 0.390993 8_4:-46443283 None:intergenic
AAAATTATTGTTGACAGGTC+TGG 0.391698 8_4:-46442577 None:intergenic
CAGATTCATTTCTGGCATCT+GGG 0.392898 8_4:+46442646 Msa1328580:CDS
TCATCTTTCAATCCTACATC+TGG 0.397689 8_4:+46442390 Msa1328580:CDS
GATAAGCTGGACTCACAAAT+AGG 0.397813 8_4:+46442876 Msa1328580:CDS
GCAAGCAGGCTTAATTGATA+TGG 0.398979 8_4:+46442128 Msa1328580:CDS
ATTGAACCTTTGATTGGTTA+GGG 0.402352 8_4:-46441374 None:intergenic
TGTCAAAAGTATCAAAATCT+TGG 0.402654 8_4:-46443319 None:intergenic
TATTGAGGGATTGGACTGTT+GGG 0.407210 8_4:+46439984 Msa1328580:five_prime_UTR
AAATTATTGTTGACAGGTCT+GGG 0.408470 8_4:-46442576 None:intergenic
GATGAAATATATTGAGGGAT+TGG 0.408796 8_4:+46439975 Msa1328580:five_prime_UTR
GAATCTATCGATTTACCTCC+TGG 0.411481 8_4:+46441333 Msa1328580:five_prime_UTR
TAGCTGAGCGGAGCATAGCT+TGG 0.413198 8_4:+46440103 Msa1328580:five_prime_UTR
AGCTGAGCGGAGCATAGCTT+GGG 0.413289 8_4:+46440104 Msa1328580:five_prime_UTR
CAGTTCCATTGCCTCCTTCT+GGG 0.414655 8_4:+46442715 Msa1328580:CDS
GTTGGGGATTTGAAGTTTGT+GGG 0.416297 8_4:+46440001 Msa1328580:five_prime_UTR
GGGATGAAGAAAGGGAATTA+GGG 0.418350 8_4:+46440021 Msa1328580:five_prime_UTR
CAGTTTCCATGTTCTTTACA+GGG 0.421384 8_4:-46443176 None:intergenic
AGAGTAGGTTGAAGCAGTAC+AGG 0.425574 8_4:+46443199 Msa1328580:three_prime_UTR
GCTCGTCTAATGCCCTTAGC+AGG 0.429377 8_4:+46442033 Msa1328580:CDS
GCTGAAACATCATGCTGAAA+GGG 0.429786 8_4:-46443029 None:intergenic
GAAGTTTGTGGGATGAAGAA+AGG 0.431657 8_4:+46440012 Msa1328580:five_prime_UTR
GAACTATTGGAAGTTGTTGC+CGG 0.432083 8_4:-46441976 None:intergenic
ATTTATGATGAAATATATTG+AGG 0.440788 8_4:+46439969 Msa1328580:five_prime_UTR
GCAGGAGCAAACAGAGTAGT+TGG 0.444997 8_4:-46442417 None:intergenic
GTTGTCTATAGCATTTCAAT+TGG 0.449832 8_4:+46440050 Msa1328580:five_prime_UTR
GAACCTGAACTTGTTTGATA+AGG 0.453047 8_4:-46442786 None:intergenic
CTGCACCATGTTGCCTAATG+AGG 0.454748 8_4:-46442845 None:intergenic
TCGGGAGCTGGTAACTTCCT+AGG 0.455316 8_4:+46443056 Msa1328580:CDS
TTTATGATGAAATATATTGA+GGG 0.456124 8_4:+46439970 Msa1328580:five_prime_UTR
TGCAGATGGGCAAGATAAGC+TGG 0.457381 8_4:+46442863 Msa1328580:CDS
ATATTGAGGGATTGGACTGT+TGG 0.459461 8_4:+46439983 Msa1328580:five_prime_UTR
CCAGATGCCAGAAATGAATC+TGG 0.461127 8_4:-46442645 None:intergenic
TGCAGCTGGGCAAGAAAGTA+GGG 0.463524 8_4:+46441626 Msa1328580:intron
TTGACAGGTCTGGGCATATG+AGG 0.463719 8_4:-46442567 None:intergenic
TTGCAGCTGGGCAAGAAAGT+AGG 0.464157 8_4:+46441625 Msa1328580:intron
TTGGCACATAACAATAATCA+AGG 0.464527 8_4:+46442930 Msa1328580:CDS
AAATTCTGTGGCTGAACATT+GGG 0.466364 8_4:-46441940 None:intergenic
TAAGGCTTTGTACTAGCAAT+GGG 0.468145 8_4:-46442768 None:intergenic
CCACATTCCTAAGATAAAAT+GGG 0.468472 8_4:+46441401 Msa1328580:exon
TTTGGTGAGACTCTGCAGCC+TGG 0.469615 8_4:+46443409 Msa1328580:three_prime_UTR
CCTCCTCGATGGGAATGATT+GGG 0.470351 8_4:-46441867 None:intergenic
GGAGGAATGGCAGAGGGTCG+GGG 0.470549 8_4:-46441699 None:intergenic
ATCATGCTGAAAGGGGCAAT+CGG 0.471157 8_4:-46443021 None:intergenic
TGATTGTGGGTCCTACAATT+GGG 0.474055 8_4:+46443295 Msa1328580:three_prime_UTR
AAAATCTTGGACCCAATTGT+AGG 0.477359 8_4:-46443306 None:intergenic
CGGGAGCTGGTAACTTCCTA+GGG 0.483524 8_4:+46443057 Msa1328580:CDS
AGGTTCAGCATCTGCTGTAA+AGG 0.486010 8_4:+46442803 Msa1328580:CDS
ATTAGGCAACATGGTGCAGA+TGG 0.486112 8_4:+46442849 Msa1328580:CDS
CATGATGTTTCAGCTGAGTC+GGG 0.488953 8_4:+46443038 Msa1328580:CDS
GGGAGAATTGAACCTTTGAT+TGG 0.489898 8_4:-46441380 None:intergenic
ATAAGGCTTTGTACTAGCAA+TGG 0.495719 8_4:-46442769 None:intergenic
GAGTGTAACCATGGAATTTG+AGG 0.498728 8_4:-46442238 None:intergenic
AAGTTTGTGGGATGAAGAAA+GGG 0.501906 8_4:+46440013 Msa1328580:five_prime_UTR
GCATGATGTTTCAGCTGAGT+CGG 0.505056 8_4:+46443037 Msa1328580:CDS
AGCTGAAACATCATGCTGAA+AGG 0.506833 8_4:-46443030 None:intergenic
AGAGGCTACTATTATAGTAT+AGG 0.506854 8_4:+46440076 Msa1328580:five_prime_UTR
AGCTGCAGCCTCTGAAGTTG+TGG 0.508132 8_4:+46442083 Msa1328580:CDS
CTGCGTCAGCTCCATTGTCT+AGG 0.513217 8_4:+46442487 Msa1328580:CDS
ATTGAGGGATTGGACTGTTG+GGG 0.519963 8_4:+46439985 Msa1328580:five_prime_UTR
GGCATATGAGGTTCAGATGT+AGG 0.520582 8_4:-46442555 None:intergenic
ATAGCTTGGGCACTCCTGAA+TGG 0.528676 8_4:+46440117 Msa1328580:five_prime_UTR
CATAGACTCTTCCTCCTCGA+TGG 0.531139 8_4:-46441878 None:intergenic
CAGCAGAAAATTACCGGGAG+AGG 0.533061 8_4:-46441429 None:intergenic
GTCTAAAACACACTAACTGT+CGG 0.533797 8_4:-46443361 None:intergenic
ATGTGAAAATTATTGTTGAC+AGG 0.534240 8_4:-46442582 None:intergenic
CAAATTCTGTGGCTGAACAT+TGG 0.535118 8_4:-46441941 None:intergenic
GTTTCAGCTGAGTCGGGAGC+TGG 0.537366 8_4:+46443044 Msa1328580:CDS
TAGGAGGAATGGCAGAGGGT+CGG 0.538274 8_4:-46441701 None:intergenic
GGACGAACTTGCAGTGGTGG+CGG 0.542355 8_4:-46442217 None:intergenic
GTGAAGTGGTGGTCCATCCA+TGG 0.543550 8_4:+46443437 Msa1328580:three_prime_UTR
GAAGATTACCCGTCAAAAGT+TGG 0.544720 8_4:+46441249 Msa1328580:five_prime_UTR
TGTTTCTTTGGATGTAGAAG+AGG 0.545703 8_4:+46441813 Msa1328580:CDS
GCAAGAAAGTAGGGAGAAAG+AGG 0.547738 8_4:+46441635 Msa1328580:CDS
GAGCATCTGAGGAGACAGTA+CGG 0.548380 8_4:-46442014 None:intergenic
TGAGGACGAACTTGCAGTGG+TGG 0.548748 8_4:-46442220 None:intergenic
ACTAGAAGATACCCCTGCTA+AGG 0.549081 8_4:-46442046 None:intergenic
GAGAATTTGATCAATGAGCA+TGG 0.549452 8_4:+46442189 Msa1328580:CDS
AAAATGGGAATGCCCTCTCC+CGG 0.549517 8_4:+46441416 Msa1328580:exon
TAGCATTTCAATTGGTCAAG+AGG 0.550198 8_4:+46440058 Msa1328580:five_prime_UTR
AACTCACACACTAGTTCTGT+GGG 0.551967 8_4:+46442333 Msa1328580:CDS
AGCATCTGAGGAGACAGTAC+GGG 0.553864 8_4:-46442013 None:intergenic
GGGCACTCCTGAATGGTCAC+AGG 0.555223 8_4:+46440124 Msa1328580:five_prime_UTR
TCTACATCCAAAGAAACAGA+AGG 0.555893 8_4:-46441808 None:intergenic
GTAGTTGGCTTACCAGATGT+AGG 0.556554 8_4:-46442402 None:intergenic
TGGCCAATGTACTCCATGGA+TGG 0.556914 8_4:-46443450 None:intergenic
AGCAGAAAATTACCGGGAGA+GGG 0.557952 8_4:-46441428 None:intergenic
TGGTTGTGGTCTGGAATTGG+TGG 0.558102 8_4:+46443260 Msa1328580:three_prime_UTR
GGTTGAAGCAGTACAGGGAG+TGG 0.559073 8_4:+46443205 Msa1328580:three_prime_UTR
GAACTCACACACTAGTTCTG+TGG 0.560378 8_4:+46442332 Msa1328580:CDS
ACCACCACTTCACTAGATCC+AGG 0.560557 8_4:-46443427 None:intergenic
GACCCTCTGCCATTCCTCCT+AGG 0.562137 8_4:+46441703 Msa1328580:CDS
GTGCCAAAACTCAGTATGCG+TGG 0.563539 8_4:-46439897 None:intergenic
CTCGTCTAATGCCCTTAGCA+GGG 0.566088 8_4:+46442034 Msa1328580:CDS
GCATTTACTTTAATAGCTCG+AGG 0.566113 8_4:+46442982 Msa1328580:CDS
AAGTTCGTCCTCAAATTCCA+TGG 0.568579 8_4:+46442230 Msa1328580:CDS
TTACCTCCTGGGTTCGAAAG+CGG 0.570253 8_4:+46441345 Msa1328580:five_prime_UTR
CATTTACTTTAATAGCTCGA+GGG 0.571255 8_4:+46442983 Msa1328580:CDS
CATTCTCTGATTATGGAAGA+AGG 0.572039 8_4:+46439856 Msa1328580:five_prime_UTR
CTAGAAGATACCCCTGCTAA+GGG 0.572585 8_4:-46442045 None:intergenic
ATAGACTCTTCCTCCTCGAT+GGG 0.574122 8_4:-46441877 None:intergenic
AATCTATCGATTTACCTCCT+GGG 0.575153 8_4:+46441334 Msa1328580:five_prime_UTR
GATGTAAACAAAGGAACTGA+AGG 0.576142 8_4:-46442285 None:intergenic
ACAAGACAGTCTTGAAGCAA+AGG 0.576393 8_4:+46441281 Msa1328580:five_prime_UTR
TTTAAACCCTGTAAAGAACA+TGG 0.578807 8_4:+46443170 Msa1328580:three_prime_UTR
CCATTGGCCAATGTACTCCA+TGG 0.579478 8_4:-46443454 None:intergenic
AAATGACCGCTTTCGAACCC+AGG 0.580431 8_4:-46441351 None:intergenic
CTGGATACTGGCCTAGACAA+TGG 0.583361 8_4:-46442498 None:intergenic
TGCCAAAACTCAGTATGCGT+GGG 0.583544 8_4:-46439896 None:intergenic
AGATTCATTTCTGGCATCTG+GGG 0.584140 8_4:+46442647 Msa1328580:CDS
GGGCATTAGACGAGCATCTG+AGG 0.586309 8_4:-46442025 None:intergenic
TCATTTCCCTAACCAATCAA+AGG 0.586642 8_4:+46441368 Msa1328580:five_prime_UTR
GTTGAAGCAGTACAGGGAGT+GGG 0.586759 8_4:+46443206 Msa1328580:three_prime_UTR
TTGCTCATTACTCTTCAAGA+TGG 0.588692 8_4:-46442109 None:intergenic
GATGGCCGCCACAACTTCAG+AGG 0.592308 8_4:-46442091 None:intergenic
TATCTTGGAAGTTACTATGA+CGG 0.596611 8_4:-46442902 None:intergenic
GCCAGAAATGAATCTGGCTG+AGG 0.596965 8_4:-46442639 None:intergenic
GCCTGGATCTAGTGAAGTGG+TGG 0.597856 8_4:+46443426 Msa1328580:three_prime_UTR
TGCAGCCTCTGAAGTTGTGG+CGG 0.606081 8_4:+46442086 Msa1328580:CDS
CTGAAACATCATGCTGAAAG+GGG 0.608148 8_4:-46443028 None:intergenic
TCCAGAAGTGAGTGTAACCA+TGG 0.609657 8_4:-46442247 None:intergenic
TACCTAGGAGGAATGGCAGA+GGG 0.611350 8_4:-46441705 None:intergenic
TACCCGGCTGAAAGCAAAGA+GGG 0.611619 8_4:+46439833 None:intergenic
TTGAAGAGTAATGAGCAAGC+AGG 0.612567 8_4:+46442114 Msa1328580:CDS
TGGCACATAACAATAATCAA+GGG 0.613321 8_4:+46442931 Msa1328580:CDS
GAGTAGGTTGAAGCAGTACA+GGG 0.615883 8_4:+46443200 Msa1328580:three_prime_UTR
ATGGGAATGATTGGGATGAG+AGG 0.616809 8_4:-46441859 None:intergenic
GTATGTAATGCAGTTGACAT+TGG 0.617784 8_4:-46442612 None:intergenic
GAATTTGCATCAATACATGC+CGG 0.618887 8_4:+46441957 Msa1328580:CDS
AAGTTCCCAGAAGGAGGCAA+TGG 0.626716 8_4:-46442720 None:intergenic
GCAGCCTGGATCTAGTGAAG+TGG 0.630342 8_4:+46443423 Msa1328580:three_prime_UTR
ACAGTATGCAAGTTCCCAGA+AGG 0.630858 8_4:-46442729 None:intergenic
GTATGCAAGTTCCCAGAAGG+AGG 0.631112 8_4:-46442726 None:intergenic
GGTCCATCCATGGAGTACAT+TGG 0.631491 8_4:+46443447 Msa1328580:three_prime_UTR
TTAGGCAACATGGTGCAGAT+GGG 0.631526 8_4:+46442850 Msa1328580:CDS
GCATCTGAGGAGACAGTACG+GGG 0.632228 8_4:-46442012 None:intergenic
AGAACATGGAAACTGAGAGT+AGG 0.638930 8_4:+46443184 Msa1328580:three_prime_UTR
TTACCTAGGAGGAATGGCAG+AGG 0.641048 8_4:-46441706 None:intergenic
GGCACATAACAATAATCAAG+GGG 0.641216 8_4:+46442932 Msa1328580:CDS
ATGAGGTTCAGATGTAGGTG+TGG 0.647403 8_4:-46442550 None:intergenic
TCGTCTAATGCCCTTAGCAG+GGG 0.652307 8_4:+46442035 Msa1328580:CDS
CTACATCCAAAGAAACAGAA+GGG 0.654763 8_4:-46441807 None:intergenic
ATTTACTTTAATAGCTCGAG+GGG 0.658318 8_4:+46442984 Msa1328580:CDS
ATCTGAGGAGACAGTACGGG+GGG 0.661328 8_4:-46442010 None:intergenic
GAAGACACGATTGAATACGA+TGG 0.663763 8_4:-46442444 None:intergenic
GAGCTGGTAACTTCCTAGGG+GGG 0.673031 8_4:+46443060 Msa1328580:CDS
CCCAATCATTCCCATCGAGG+AGG 0.674658 8_4:+46441867 Msa1328580:CDS
ATTTGAGGACGAACTTGCAG+TGG 0.676325 8_4:-46442223 None:intergenic
GGATTGAAAGATGAAACTGA+TGG 0.677966 8_4:-46442381 None:intergenic
GGAGCTGGTAACTTCCTAGG+GGG 0.677996 8_4:+46443059 Msa1328580:CDS
ATGTATTGATGCAAATTCTG+TGG 0.682900 8_4:-46441952 None:intergenic
TCGAGTGTAGATGTAAACAA+AGG 0.685704 8_4:-46442294 None:intergenic
GTTTACATCTACACTCGATG+TGG 0.686261 8_4:+46442299 Msa1328580:CDS
CATCCCAATCATTCCCATCG+AGG 0.693777 8_4:+46441864 Msa1328580:CDS
GGGAGCTGGTAACTTCCTAG+GGG 0.705156 8_4:+46443058 Msa1328580:CDS
TTTACTTTAATAGCTCGAGG+GGG 0.714437 8_4:+46442985 Msa1328580:CDS
AGTATAGGTGCATAGCTGAG+CGG 0.715367 8_4:+46440091 Msa1328580:five_prime_UTR
TGACCGCTTTCGAACCCAGG+AGG 0.723419 8_4:-46441348 None:intergenic
CATCTGAGGAGACAGTACGG+GGG 0.770239 8_4:-46442011 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTTCATCATAAATAA+TGG - chr8_4:46439967-46439986 None:intergenic 10.0%
!!! ATTCATGTATTTTTTAAAAA+GGG + chr8_4:46440688-46440707 Msa1328580:intron 10.0%
!! ATTTATGATGAAATATATTG+AGG + chr8_4:46439969-46439988 Msa1328580:five_prime_UTR 15.0%
!! TTTATGATGAAATATATTGA+GGG + chr8_4:46439970-46439989 Msa1328580:five_prime_UTR 15.0%
!!! GATTCATGTATTTTTTAAAA+AGG + chr8_4:46440687-46440706 Msa1328580:intron 15.0%
!! ATCATAAATAATGGCATTAA+CGG - chr8_4:46439958-46439977 None:intergenic 20.0%
!! ATATAGGATACAATTTCTTA+AGG + chr8_4:46440276-46440295 Msa1328580:intron 20.0%
!! ATATAGGATACAATTTCTTA+AGG + chr8_4:46440276-46440295 Msa1328580:intron 20.0%
!! AAATACATATTGCTAACAAA+GGG - chr8_4:46441472-46441491 None:intergenic 20.0%
!!! AAATATTCAACATTTTACCT+AGG - chr8_4:46441723-46441742 None:intergenic 20.0%
!!! TCAAATTCTCAATCATTTTT+GGG - chr8_4:46442179-46442198 None:intergenic 20.0%
!!! ATCAAATTCTCAATCATTTT+TGG - chr8_4:46442180-46442199 None:intergenic 20.0%
!! ACTATTATAAAAACCTCATT+AGG + chr8_4:46442832-46442851 Msa1328580:CDS 20.0%
!!! AGATTTAAGTTGTGAAATTT+AGG + chr8_4:46443095-46443114 Msa1328580:exon 20.0%
!!! AAAAATTGCTTAAGTTTTTG+TGG + chr8_4:46443240-46443259 Msa1328580:three_prime_UTR 20.0%
!!! TATTTTCTATTTTTGCAGTT+TGG + chr8_4:46443391-46443410 Msa1328580:three_prime_UTR 20.0%
!!! TGTTGTTTTTCTTTTCTTCT+TGG + chr8_4:46440250-46440269 Msa1328580:intron 25.0%
!! CTTTTCTTCTTGGAAAATAT+AGG + chr8_4:46440260-46440279 Msa1328580:intron 25.0%
! TTGTTGTATCTGATACTTAT+AGG - chr8_4:46440375-46440394 None:intergenic 25.0%
!!! TGTTGTTTTTCTTTTCTTCT+TGG + chr8_4:46440250-46440269 Msa1328580:intron 25.0%
!! CTTTTCTTCTTGGAAAATAT+AGG + chr8_4:46440260-46440279 Msa1328580:intron 25.0%
!!! GTATGTTTTCGTTTGAAATT+TGG - chr8_4:46440543-46440562 None:intergenic 25.0%
! AATACAATAGTTTACGTTGA+AGG - chr8_4:46440654-46440673 None:intergenic 25.0%
! TTTATGTTTAAGAGAGATAG+AGG - chr8_4:46440849-46440868 None:intergenic 25.0%
!!! AGATAGACATTAGTTGTTTT+CGG - chr8_4:46440929-46440948 None:intergenic 25.0%
! ATATCACAAATAGGTTTGAA+TGG - chr8_4:46441166-46441185 None:intergenic 25.0%
!! AGAAAGTGTATATCACAAAT+AGG - chr8_4:46441175-46441194 None:intergenic 25.0%
! ACTAATTTATATGACCTAAC+AGG + chr8_4:46441209-46441228 Msa1328580:intron 25.0%
! GAAATACATATTGCTAACAA+AGG - chr8_4:46441473-46441492 None:intergenic 25.0%
! ATGTGAAAATTATTGTTGAC+AGG - chr8_4:46442585-46442604 None:intergenic 25.0%
! TAACTTCCAAGATATGAAAT+TGG + chr8_4:46442911-46442930 Msa1328580:CDS 25.0%
!!! TGTCAAAAGTATCAAAATCT+TGG - chr8_4:46443322-46443341 None:intergenic 25.0%
!!! TTAGTGTGTTTTAGACAAAT+TGG + chr8_4:46443368-46443387 Msa1328580:three_prime_UTR 25.0%
GATGAAATATATTGAGGGAT+TGG + chr8_4:46439975-46439994 Msa1328580:five_prime_UTR 30.0%
GTTGTCTATAGCATTTCAAT+TGG + chr8_4:46440050-46440069 Msa1328580:five_prime_UTR 30.0%
AGAGGCTACTATTATAGTAT+AGG + chr8_4:46440076-46440095 Msa1328580:five_prime_UTR 30.0%
TGATACTTATAGGATACGTT+TGG - chr8_4:46440365-46440384 None:intergenic 30.0%
!! ACATTGATTCATCAGTAAAC+GGG - chr8_4:46440590-46440609 None:intergenic 30.0%
!! CACATTGATTCATCAGTAAA+CGG - chr8_4:46440591-46440610 None:intergenic 30.0%
! CTATTGTATTAAGAGCATGT+CGG + chr8_4:46440664-46440683 Msa1328580:intron 30.0%
! TATTGTATTAAGAGCATGTC+GGG + chr8_4:46440665-46440684 Msa1328580:intron 30.0%
AAAGAATAATAGCAGCTAGA+AGG - chr8_4:46440824-46440843 None:intergenic 30.0%
CATGCTGAAAATTGTGTATT+TGG + chr8_4:46440976-46440995 Msa1328580:intron 30.0%
TAGACACATAATTATGCACA+TGG - chr8_4:46441019-46441038 None:intergenic 30.0%
! AAATAGTAGTATTTGCTAGC+AGG + chr8_4:46441076-46441095 Msa1328580:intron 30.0%
! AATAGTAGTATTTGCTAGCA+GGG + chr8_4:46441077-46441096 Msa1328580:intron 30.0%
! ATTGAACCTTTGATTGGTTA+GGG - chr8_4:46441377-46441396 None:intergenic 30.0%
! AATTGAACCTTTGATTGGTT+AGG - chr8_4:46441378-46441397 None:intergenic 30.0%
! CCATTTTATCTTAGGAATGT+GGG - chr8_4:46441403-46441422 None:intergenic 30.0%
CCACATTCCTAAGATAAAAT+GGG + chr8_4:46441401-46441420 Msa1328580:exon 30.0%
! TATTCAACATTTTACCTAGG+AGG - chr8_4:46441720-46441739 None:intergenic 30.0%
ACAGAAAATGAAACAACACA+AGG - chr8_4:46441753-46441772 None:intergenic 30.0%
! ATGTATTGATGCAAATTCTG+TGG - chr8_4:46441955-46441974 None:intergenic 30.0%
AAATTATTGTTGACAGGTCT+GGG - chr8_4:46442579-46442598 None:intergenic 30.0%
AAAATTATTGTTGACAGGTC+TGG - chr8_4:46442580-46442599 None:intergenic 30.0%
TATCTTGGAAGTTACTATGA+CGG - chr8_4:46442905-46442924 None:intergenic 30.0%
TATGTGCCAATTTCATATCT+TGG - chr8_4:46442920-46442939 None:intergenic 30.0%
TTGGCACATAACAATAATCA+AGG + chr8_4:46442930-46442949 Msa1328580:CDS 30.0%
TGGCACATAACAATAATCAA+GGG + chr8_4:46442931-46442950 Msa1328580:CDS 30.0%
CATTTACTTTAATAGCTCGA+GGG + chr8_4:46442983-46443002 Msa1328580:CDS 30.0%
ATTTACTTTAATAGCTCGAG+GGG + chr8_4:46442984-46443003 Msa1328580:CDS 30.0%
! TTCTAAGCAGCAATTTTCAA+TGG + chr8_4:46443129-46443148 Msa1328580:three_prime_UTR 30.0%
TTTAAACCCTGTAAAGAACA+TGG + chr8_4:46443170-46443189 Msa1328580:three_prime_UTR 30.0%
CATTCTCTGATTATGGAAGA+AGG + chr8_4:46439856-46439875 Msa1328580:five_prime_UTR 35.0%
AAGTTTGTGGGATGAAGAAA+GGG + chr8_4:46440013-46440032 Msa1328580:five_prime_UTR 35.0%
TAGCATTTCAATTGGTCAAG+AGG + chr8_4:46440058-46440077 Msa1328580:five_prime_UTR 35.0%
TCAGATACAACAAACGTATC+TGG + chr8_4:46440382-46440401 Msa1328580:intron 35.0%
ATGCAATACTGATGTTTCAG+AGG - chr8_4:46440565-46440584 None:intergenic 35.0%
! TTCAGAGTATGTTGGTGTTT+CGG + chr8_4:46440745-46440764 Msa1328580:intron 35.0%
ACTAAAAGAGCTACTAGACA+TGG - chr8_4:46440894-46440913 None:intergenic 35.0%
!! AGTTGTTTTCGGCAATATCA+TGG - chr8_4:46440918-46440937 None:intergenic 35.0%
AGCAGGGAATTTCTTATCTT+AGG + chr8_4:46441093-46441112 Msa1328580:intron 35.0%
CAAGAACAATTTGACCTGTT+AGG - chr8_4:46441226-46441245 None:intergenic 35.0%
!! AACTTTTGACGGGTAATCTT+CGG - chr8_4:46441250-46441269 None:intergenic 35.0%
! AAATTCAGGCCAACTTTTGA+CGG - chr8_4:46441261-46441280 None:intergenic 35.0%
CAAGACTGTCTTGTAAATTC+AGG - chr8_4:46441275-46441294 None:intergenic 35.0%
!! AATCTATCGATTTACCTCCT+GGG + chr8_4:46441334-46441353 Msa1328580:five_prime_UTR 35.0%
TCATTTCCCTAACCAATCAA+AGG + chr8_4:46441368-46441387 Msa1328580:five_prime_UTR 35.0%
CCCACATTCCTAAGATAAAA+TGG + chr8_4:46441400-46441419 Msa1328580:exon 35.0%
! CCCATTTTATCTTAGGAATG+TGG - chr8_4:46441404-46441423 None:intergenic 35.0%
AACAAGCAGCAGAAAATTAC+CGG - chr8_4:46441438-46441457 None:intergenic 35.0%
ATATTGCTAACAAAGGGTTG+TGG - chr8_4:46441466-46441485 None:intergenic 35.0%
CATACTCTGCTTTCTTTAAC+TGG + chr8_4:46441526-46441545 Msa1328580:intron 35.0%
AGTTTGTGTTCAGTCCTAAT+TGG + chr8_4:46441598-46441617 Msa1328580:intron 35.0%
! AACATTTTACCTAGGAGGAA+TGG - chr8_4:46441715-46441734 None:intergenic 35.0%
!! TAACATTGTTGACTTGCGTT+TGG + chr8_4:46441776-46441795 Msa1328580:intron 35.0%
!! AACATTGTTGACTTGCGTTT+GGG + chr8_4:46441777-46441796 Msa1328580:intron 35.0%
CTACATCCAAAGAAACAGAA+GGG - chr8_4:46441810-46441829 None:intergenic 35.0%
TCTACATCCAAAGAAACAGA+AGG - chr8_4:46441811-46441830 None:intergenic 35.0%
TGTTTCTTTGGATGTAGAAG+AGG + chr8_4:46441813-46441832 Msa1328580:CDS 35.0%
AAATTCTGTGGCTGAACATT+GGG - chr8_4:46441943-46441962 None:intergenic 35.0%
GAATTTGCATCAATACATGC+CGG + chr8_4:46441957-46441976 Msa1328580:CDS 35.0%
TTGCTCATTACTCTTCAAGA+TGG - chr8_4:46442112-46442131 None:intergenic 35.0%
GAGAATTTGATCAATGAGCA+TGG + chr8_4:46442189-46442208 Msa1328580:CDS 35.0%
GATGTAAACAAAGGAACTGA+AGG - chr8_4:46442288-46442307 None:intergenic 35.0%
TCGAGTGTAGATGTAAACAA+AGG - chr8_4:46442297-46442316 None:intergenic 35.0%
GGATTGAAAGATGAAACTGA+TGG - chr8_4:46442384-46442403 None:intergenic 35.0%
TCATCTTTCAATCCTACATC+TGG + chr8_4:46442390-46442409 Msa1328580:CDS 35.0%
ATTGAATACGATGGAATTGC+AGG - chr8_4:46442438-46442457 None:intergenic 35.0%
!! GATATTGGTTTACTGGATAC+TGG - chr8_4:46442513-46442532 None:intergenic 35.0%
ATAAAAACAGAGGGGGATAT+TGG - chr8_4:46442528-46442547 None:intergenic 35.0%
GTATGTAATGCAGTTGACAT+TGG - chr8_4:46442615-46442634 None:intergenic 35.0%
! TAAGGCTTTGTACTAGCAAT+GGG - chr8_4:46442771-46442790 None:intergenic 35.0%
! ATAAGGCTTTGTACTAGCAA+TGG - chr8_4:46442772-46442791 None:intergenic 35.0%
! AAGCCTTATCAAACAAGTTC+AGG + chr8_4:46442783-46442802 Msa1328580:CDS 35.0%
! GAACCTGAACTTGTTTGATA+AGG - chr8_4:46442789-46442808 None:intergenic 35.0%
AAAAACCTCATTAGGCAACA+TGG + chr8_4:46442840-46442859 Msa1328580:CDS 35.0%
GGCACATAACAATAATCAAG+GGG + chr8_4:46442932-46442951 Msa1328580:CDS 35.0%
GCATTTACTTTAATAGCTCG+AGG + chr8_4:46442982-46443001 Msa1328580:CDS 35.0%
TTTACTTTAATAGCTCGAGG+GGG + chr8_4:46442985-46443004 Msa1328580:CDS 35.0%
CAGTTTCCATGTTCTTTACA+GGG - chr8_4:46443179-46443198 None:intergenic 35.0%
TCAGTTTCCATGTTCTTTAC+AGG - chr8_4:46443180-46443199 None:intergenic 35.0%
! TGCTTAAGTTTTTGTGGTTG+TGG + chr8_4:46443246-46443265 Msa1328580:three_prime_UTR 35.0%
AAAATCTTGGACCCAATTGT+AGG - chr8_4:46443309-46443328 None:intergenic 35.0%
! GATACTTTTGACATGTCTGT+TGG + chr8_4:46443329-46443348 Msa1328580:three_prime_UTR 35.0%
! GTCTAAAACACACTAACTGT+CGG - chr8_4:46443364-46443383 None:intergenic 35.0%
!! AAGAGGGCATTCTCTGATTA+TGG + chr8_4:46439849-46439868 Msa1328580:five_prime_UTR 40.0%
! GGCACAAAACATCGTTGTTT+TGG + chr8_4:46439915-46439934 Msa1328580:five_prime_UTR 40.0%
ATATTGAGGGATTGGACTGT+TGG + chr8_4:46439983-46440002 Msa1328580:five_prime_UTR 40.0%
TATTGAGGGATTGGACTGTT+GGG + chr8_4:46439984-46440003 Msa1328580:five_prime_UTR 40.0%
! TGTTGGGGATTTGAAGTTTG+TGG + chr8_4:46440000-46440019 Msa1328580:five_prime_UTR 40.0%
! GTTGGGGATTTGAAGTTTGT+GGG + chr8_4:46440001-46440020 Msa1328580:five_prime_UTR 40.0%
GAAGTTTGTGGGATGAAGAA+AGG + chr8_4:46440012-46440031 Msa1328580:five_prime_UTR 40.0%
TGGGATGAAGAAAGGGAATT+AGG + chr8_4:46440020-46440039 Msa1328580:five_prime_UTR 40.0%
GGGATGAAGAAAGGGAATTA+GGG + chr8_4:46440021-46440040 Msa1328580:five_prime_UTR 40.0%
AGCACTTGAACTTAGTAGTC+TGG + chr8_4:46440149-46440168 Msa1328580:intron 40.0%
ACTTGAACTTAGTAGTCTGG+AGG + chr8_4:46440152-46440171 Msa1328580:intron 40.0%
CTTGAACTTAGTAGTCTGGA+GGG + chr8_4:46440153-46440172 Msa1328580:intron 40.0%
TATGAGCTGGCACATGTTTA+TGG + chr8_4:46440719-46440738 Msa1328580:intron 40.0%
TATGGCGTTTCAGAGTATGT+TGG + chr8_4:46440737-46440756 Msa1328580:intron 40.0%
! ACATGGATGTAAGGAGTATG+GGG - chr8_4:46440877-46440896 None:intergenic 40.0%
! GACATGGATGTAAGGAGTAT+GGG - chr8_4:46440878-46440897 None:intergenic 40.0%
AGACATGGATGTAAGGAGTA+TGG - chr8_4:46440879-46440898 None:intergenic 40.0%
AGCTACTAGACATGGATGTA+AGG - chr8_4:46440886-46440905 None:intergenic 40.0%
GAAGATTACCCGTCAAAAGT+TGG + chr8_4:46441249-46441268 Msa1328580:five_prime_UTR 40.0%
! AATTCAGGCCAACTTTTGAC+GGG - chr8_4:46441260-46441279 None:intergenic 40.0%
ACAAGACAGTCTTGAAGCAA+AGG + chr8_4:46441281-46441300 Msa1328580:five_prime_UTR 40.0%
!! GAATCTATCGATTTACCTCC+TGG + chr8_4:46441333-46441352 Msa1328580:five_prime_UTR 40.0%
GGGAGAATTGAACCTTTGAT+TGG - chr8_4:46441383-46441402 None:intergenic 40.0%
! GGGCATTCCCATTTTATCTT+AGG - chr8_4:46441411-46441430 None:intergenic 40.0%
ACAAGCAGCAGAAAATTACC+GGG - chr8_4:46441437-46441456 None:intergenic 40.0%
! ATGTAGCCCTTCTGTTTCTT+TGG + chr8_4:46441801-46441820 Msa1328580:intron 40.0%
TTCACTGCTGCTGCTAATTT+AGG - chr8_4:46441913-46441932 None:intergenic 40.0%
CAAATTCTGTGGCTGAACAT+TGG - chr8_4:46441944-46441963 None:intergenic 40.0%
GAACTATTGGAAGTTGTTGC+CGG - chr8_4:46441979-46441998 None:intergenic 40.0%
GGAATTACGGTCTGAACTAT+TGG - chr8_4:46441992-46442011 None:intergenic 40.0%
TTGAAGAGTAATGAGCAAGC+AGG + chr8_4:46442114-46442133 Msa1328580:CDS 40.0%
GCAAGCAGGCTTAATTGATA+TGG + chr8_4:46442128-46442147 Msa1328580:CDS 40.0%
AAGTTCGTCCTCAAATTCCA+TGG + chr8_4:46442230-46442249 Msa1328580:CDS 40.0%
GAGTGTAACCATGGAATTTG+AGG - chr8_4:46442241-46442260 None:intergenic 40.0%
GTTTACATCTACACTCGATG+TGG + chr8_4:46442299-46442318 Msa1328580:CDS 40.0%
!! AACTCACACACTAGTTCTGT+GGG + chr8_4:46442333-46442352 Msa1328580:CDS 40.0%
!!! ACTAGTTCTGTGGGTTTTTC+TGG + chr8_4:46442342-46442361 Msa1328580:CDS 40.0%
!!! CTAGTTCTGTGGGTTTTTCT+GGG + chr8_4:46442343-46442362 Msa1328580:CDS 40.0%
GATGAAACTGATGGAATTGC+AGG - chr8_4:46442375-46442394 None:intergenic 40.0%
GAAGACACGATTGAATACGA+TGG - chr8_4:46442447-46442466 None:intergenic 40.0%
TGTGGACATAAAAACAGAGG+GGG - chr8_4:46442535-46442554 None:intergenic 40.0%
GTGTGGACATAAAAACAGAG+GGG - chr8_4:46442536-46442555 None:intergenic 40.0%
GGTGTGGACATAAAAACAGA+GGG - chr8_4:46442537-46442556 None:intergenic 40.0%
AGGTGTGGACATAAAAACAG+AGG - chr8_4:46442538-46442557 None:intergenic 40.0%
!! CAGATTCATTTCTGGCATCT+GGG + chr8_4:46442646-46442665 Msa1328580:CDS 40.0%
!! AGATTCATTTCTGGCATCTG+GGG + chr8_4:46442647-46442666 Msa1328580:CDS 40.0%
GATAAGCTGGACTCACAAAT+AGG + chr8_4:46442876-46442895 Msa1328580:CDS 40.0%
CTGAAACATCATGCTGAAAG+GGG - chr8_4:46443031-46443050 None:intergenic 40.0%
GCTGAAACATCATGCTGAAA+GGG - chr8_4:46443032-46443051 None:intergenic 40.0%
AGCTGAAACATCATGCTGAA+AGG - chr8_4:46443033-46443052 None:intergenic 40.0%
AGAACATGGAAACTGAGAGT+AGG + chr8_4:46443184-46443203 Msa1328580:three_prime_UTR 40.0%
! AAGTTTTTGTGGTTGTGGTC+TGG + chr8_4:46443251-46443270 Msa1328580:three_prime_UTR 40.0%
!! GCCAGTTTTGGTATGATTGT+GGG + chr8_4:46443282-46443301 Msa1328580:three_prime_UTR 40.0%
ACCCACAATCATACCAAAAC+TGG - chr8_4:46443286-46443305 None:intergenic 40.0%
ATGATTGTGGGTCCTACAAT+TGG + chr8_4:46443294-46443313 Msa1328580:three_prime_UTR 40.0%
TGATTGTGGGTCCTACAATT+GGG + chr8_4:46443295-46443314 Msa1328580:three_prime_UTR 40.0%
!! ACACACTAACTGTCGGTTTA+AGG - chr8_4:46443357-46443376 None:intergenic 40.0%
TGCCAAAACTCAGTATGCGT+GGG - chr8_4:46439899-46439918 None:intergenic 45.0%
ATTGAGGGATTGGACTGTTG+GGG + chr8_4:46439985-46440004 Msa1328580:five_prime_UTR 45.0%
AGTATAGGTGCATAGCTGAG+CGG + chr8_4:46440091-46440110 Msa1328580:five_prime_UTR 45.0%
AACTTAGTAGTCTGGAGGGT+TGG + chr8_4:46440157-46440176 Msa1328580:intron 45.0%
CGTATCTGATACTTGTAGCC+AGG - chr8_4:46440225-46440244 None:intergenic 45.0%
TGTTTCGGTCAAACACGTCA+TGG + chr8_4:46440760-46440779 Msa1328580:intron 45.0%
GTTTCGGTCAAACACGTCAT+GGG + chr8_4:46440761-46440780 Msa1328580:intron 45.0%
GTCTGCTAAGATGCACCATA+CGG - chr8_4:46440797-46440816 None:intergenic 45.0%
! CATGGATGTAAGGAGTATGG+GGG - chr8_4:46440876-46440895 None:intergenic 45.0%
CACATGGATATGAAGAGCAG+AGG - chr8_4:46441003-46441022 None:intergenic 45.0%
AGCAGAAAATTACCGGGAGA+GGG - chr8_4:46441431-46441450 None:intergenic 45.0%
! CTAATTGGCTAGTTGCAGCT+GGG + chr8_4:46441613-46441632 Msa1328580:intron 45.0%
GCAAGAAAGTAGGGAGAAAG+AGG + chr8_4:46441635-46441654 Msa1328580:CDS 45.0%
ATGGGAATGATTGGGATGAG+AGG - chr8_4:46441862-46441881 None:intergenic 45.0%
ATAGACTCTTCCTCCTCGAT+GGG - chr8_4:46441880-46441899 None:intergenic 45.0%
CTAGAAGATACCCCTGCTAA+GGG - chr8_4:46442048-46442067 None:intergenic 45.0%
ACTAGAAGATACCCCTGCTA+AGG - chr8_4:46442049-46442068 None:intergenic 45.0%
!! AGCAGGGGTATCTTCTAGTT+TGG + chr8_4:46442050-46442069 Msa1328580:CDS 45.0%
ATTTGAGGACGAACTTGCAG+TGG - chr8_4:46442226-46442245 None:intergenic 45.0%
TCCATGGTTACACTCACTTC+TGG + chr8_4:46442246-46442265 Msa1328580:CDS 45.0%
TCCAGAAGTGAGTGTAACCA+TGG - chr8_4:46442250-46442269 None:intergenic 45.0%
!! GAACTCACACACTAGTTCTG+TGG + chr8_4:46442332-46442351 Msa1328580:CDS 45.0%
! GTAGTTGGCTTACCAGATGT+AGG - chr8_4:46442405-46442424 None:intergenic 45.0%
!! AGAGGGGGATATTGGTTTAC+TGG - chr8_4:46442520-46442539 None:intergenic 45.0%
ATGAGGTTCAGATGTAGGTG+TGG - chr8_4:46442553-46442572 None:intergenic 45.0%
GGCATATGAGGTTCAGATGT+AGG - chr8_4:46442558-46442577 None:intergenic 45.0%
CCAGATGCCAGAAATGAATC+TGG - chr8_4:46442648-46442667 None:intergenic 45.0%
!! CCAGATTCATTTCTGGCATC+TGG + chr8_4:46442645-46442664 Msa1328580:CDS 45.0%
ACAGTATGCAAGTTCCCAGA+AGG - chr8_4:46442732-46442751 None:intergenic 45.0%
AGGTTCAGCATCTGCTGTAA+AGG + chr8_4:46442803-46442822 Msa1328580:CDS 45.0%
ATTAGGCAACATGGTGCAGA+TGG + chr8_4:46442849-46442868 Msa1328580:CDS 45.0%
TTAGGCAACATGGTGCAGAT+GGG + chr8_4:46442850-46442869 Msa1328580:CDS 45.0%
ATCATGCTGAAAGGGGCAAT+CGG - chr8_4:46443024-46443043 None:intergenic 45.0%
GCATGATGTTTCAGCTGAGT+CGG + chr8_4:46443037-46443056 Msa1328580:CDS 45.0%
CATGATGTTTCAGCTGAGTC+GGG + chr8_4:46443038-46443057 Msa1328580:CDS 45.0%
! AGAGTAGGTTGAAGCAGTAC+AGG + chr8_4:46443199-46443218 Msa1328580:three_prime_UTR 45.0%
! GAGTAGGTTGAAGCAGTACA+GGG + chr8_4:46443200-46443219 Msa1328580:three_prime_UTR 45.0%
! TTGTGGTTGTGGTCTGGAAT+TGG + chr8_4:46443257-46443276 Msa1328580:three_prime_UTR 45.0%
!! GGCCAGTTTTGGTATGATTG+TGG + chr8_4:46443281-46443300 Msa1328580:three_prime_UTR 45.0%
! AGCCCACGCATACTGAGTTT+TGG + chr8_4:46439894-46439913 Msa1328580:five_prime_UTR 50.0%
GTGCCAAAACTCAGTATGCG+TGG - chr8_4:46439900-46439919 None:intergenic 50.0%
ATAGCTTGGGCACTCCTGAA+TGG + chr8_4:46440117-46440136 Msa1328580:five_prime_UTR 50.0%
ACCCTTACAGTGCATAGACC+TGG + chr8_4:46440204-46440223 Msa1328580:intron 50.0%
GCCAGGTCTATGCACTGTAA+GGG - chr8_4:46440208-46440227 None:intergenic 50.0%
AGCCAGGTCTATGCACTGTA+AGG - chr8_4:46440209-46440228 None:intergenic 50.0%
! AAGGGTCGCTGATTATGAGC+TGG + chr8_4:46440706-46440725 Msa1328580:intron 50.0%
ATGGGAGGCAAAATGCCGTA+TGG + chr8_4:46440779-46440798 Msa1328580:intron 50.0%
TTACCTCCTGGGTTCGAAAG+CGG + chr8_4:46441345-46441364 Msa1328580:five_prime_UTR 50.0%
AAATGACCGCTTTCGAACCC+AGG - chr8_4:46441354-46441373 None:intergenic 50.0%
AAAATGGGAATGCCCTCTCC+CGG + chr8_4:46441416-46441435 Msa1328580:exon 50.0%
CAGCAGAAAATTACCGGGAG+AGG - chr8_4:46441432-46441451 None:intergenic 50.0%
CCAGCTGCAACTAGCCAATT+AGG - chr8_4:46441615-46441634 None:intergenic 50.0%
! CCTAATTGGCTAGTTGCAGC+TGG + chr8_4:46441612-46441631 Msa1328580:intron 50.0%
TTGCAGCTGGGCAAGAAAGT+AGG + chr8_4:46441625-46441644 Msa1328580:intron 50.0%
TGCAGCTGGGCAAGAAAGTA+GGG + chr8_4:46441626-46441645 Msa1328580:intron 50.0%
TACCTAGGAGGAATGGCAGA+GGG - chr8_4:46441708-46441727 None:intergenic 50.0%
TTACCTAGGAGGAATGGCAG+AGG - chr8_4:46441709-46441728 None:intergenic 50.0%
CATCCCAATCATTCCCATCG+AGG + chr8_4:46441864-46441883 Msa1328580:CDS 50.0%
CCTCCTCGATGGGAATGATT+GGG - chr8_4:46441870-46441889 None:intergenic 50.0%
TCCTCCTCGATGGGAATGAT+TGG - chr8_4:46441871-46441890 None:intergenic 50.0%
CATAGACTCTTCCTCCTCGA+TGG - chr8_4:46441881-46441900 None:intergenic 50.0%
AGACAGTACGGGGGGAATTA+CGG - chr8_4:46442005-46442024 None:intergenic 50.0%
AGCATCTGAGGAGACAGTAC+GGG - chr8_4:46442016-46442035 None:intergenic 50.0%
GAGCATCTGAGGAGACAGTA+CGG - chr8_4:46442017-46442036 None:intergenic 50.0%
CTCGTCTAATGCCCTTAGCA+GGG + chr8_4:46442034-46442053 Msa1328580:CDS 50.0%
TCGTCTAATGCCCTTAGCAG+GGG + chr8_4:46442035-46442054 Msa1328580:CDS 50.0%
GCAGGAGCAAACAGAGTAGT+TGG - chr8_4:46442420-46442439 None:intergenic 50.0%
! CTGGATACTGGCCTAGACAA+TGG - chr8_4:46442501-46442520 None:intergenic 50.0%
TTGACAGGTCTGGGCATATG+AGG - chr8_4:46442570-46442589 None:intergenic 50.0%
GCCTCAGCCAGATTCATTTC+TGG + chr8_4:46442638-46442657 Msa1328580:CDS 50.0%
GCCAGAAATGAATCTGGCTG+AGG - chr8_4:46442642-46442661 None:intergenic 50.0%
ACAGTTCCATTGCCTCCTTC+TGG + chr8_4:46442714-46442733 Msa1328580:CDS 50.0%
CAGTTCCATTGCCTCCTTCT+GGG + chr8_4:46442715-46442734 Msa1328580:CDS 50.0%
AAGTTCCCAGAAGGAGGCAA+TGG - chr8_4:46442723-46442742 None:intergenic 50.0%
GTATGCAAGTTCCCAGAAGG+AGG - chr8_4:46442729-46442748 None:intergenic 50.0%
CTGCACCATGTTGCCTAATG+AGG - chr8_4:46442848-46442867 None:intergenic 50.0%
TGCAGATGGGCAAGATAAGC+TGG + chr8_4:46442863-46442882 Msa1328580:CDS 50.0%
GTTGAAGCAGTACAGGGAGT+GGG + chr8_4:46443206-46443225 Msa1328580:three_prime_UTR 50.0%
! TGGTTGTGGTCTGGAATTGG+TGG + chr8_4:46443260-46443279 Msa1328580:three_prime_UTR 50.0%
!! CTGGAATTGGTGGCCAGTTT+TGG + chr8_4:46443270-46443289 Msa1328580:three_prime_UTR 50.0%
ACCACCACTTCACTAGATCC+AGG - chr8_4:46443430-46443449 None:intergenic 50.0%
GGTCCATCCATGGAGTACAT+TGG + chr8_4:46443447-46443466 Msa1328580:three_prime_UTR 50.0%
TAGCTGAGCGGAGCATAGCT+TGG + chr8_4:46440103-46440122 Msa1328580:five_prime_UTR 55.0%
AGCTGAGCGGAGCATAGCTT+GGG + chr8_4:46440104-46440123 Msa1328580:five_prime_UTR 55.0%
GTGCTCACCTGTGACCATTC+AGG - chr8_4:46440134-46440153 None:intergenic 55.0%
TCGGTCAAACACGTCATGGG+AGG + chr8_4:46440764-46440783 Msa1328580:intron 55.0%
CAGCATGTTGCTGCTGCAGA+AGG - chr8_4:46440963-46440982 None:intergenic 55.0%
TAGGAGGAATGGCAGAGGGT+CGG - chr8_4:46441704-46441723 None:intergenic 55.0%
CCCAATCATTCCCATCGAGG+AGG + chr8_4:46441867-46441886 Msa1328580:CDS 55.0%
ATCTGAGGAGACAGTACGGG+GGG - chr8_4:46442013-46442032 None:intergenic 55.0%
CATCTGAGGAGACAGTACGG+GGG - chr8_4:46442014-46442033 None:intergenic 55.0%
GCATCTGAGGAGACAGTACG+GGG - chr8_4:46442015-46442034 None:intergenic 55.0%
GGGCATTAGACGAGCATCTG+AGG - chr8_4:46442028-46442047 None:intergenic 55.0%
GCTCGTCTAATGCCCTTAGC+AGG + chr8_4:46442033-46442052 Msa1328580:CDS 55.0%
!! AGCTGCAGCCTCTGAAGTTG+TGG + chr8_4:46442083-46442102 Msa1328580:CDS 55.0%
!! TGCAGCCTCTGAAGTTGTGG+CGG + chr8_4:46442086-46442105 Msa1328580:CDS 55.0%
TGAGGACGAACTTGCAGTGG+TGG - chr8_4:46442223-46442242 None:intergenic 55.0%
CACTCGATGTGGCAGCTTCT+AGG + chr8_4:46442310-46442329 Msa1328580:CDS 55.0%
AATGGAGCTGACGCAGTTGC+TGG - chr8_4:46442483-46442502 None:intergenic 55.0%
CTGCGTCAGCTCCATTGTCT+AGG + chr8_4:46442487-46442506 Msa1328580:CDS 55.0%
! TTAATAGCTCGAGGGGGTGC+AGG + chr8_4:46442991-46443010 Msa1328580:CDS 55.0%
TCGGGAGCTGGTAACTTCCT+AGG + chr8_4:46443056-46443075 Msa1328580:CDS 55.0%
CGGGAGCTGGTAACTTCCTA+GGG + chr8_4:46443057-46443076 Msa1328580:CDS 55.0%
GGGAGCTGGTAACTTCCTAG+GGG + chr8_4:46443058-46443077 Msa1328580:CDS 55.0%
GGAGCTGGTAACTTCCTAGG+GGG + chr8_4:46443059-46443078 Msa1328580:CDS 55.0%
GAGCTGGTAACTTCCTAGGG+GGG + chr8_4:46443060-46443079 Msa1328580:CDS 55.0%
! TTTTAGCACTCTGCCCCCCT+AGG - chr8_4:46443076-46443095 None:intergenic 55.0%
GGTTGAAGCAGTACAGGGAG+TGG + chr8_4:46443205-46443224 Msa1328580:three_prime_UTR 55.0%
TTTGGTGAGACTCTGCAGCC+TGG + chr8_4:46443409-46443428 Msa1328580:three_prime_UTR 55.0%
GCAGCCTGGATCTAGTGAAG+TGG + chr8_4:46443423-46443442 Msa1328580:three_prime_UTR 55.0%
GCCTGGATCTAGTGAAGTGG+TGG + chr8_4:46443426-46443445 Msa1328580:three_prime_UTR 55.0%
GTGAAGTGGTGGTCCATCCA+TGG + chr8_4:46443437-46443456 Msa1328580:three_prime_UTR 55.0%
GGGCACTCCTGAATGGTCAC+AGG + chr8_4:46440124-46440143 Msa1328580:five_prime_UTR 60.0%
TGACCGCTTTCGAACCCAGG+AGG - chr8_4:46441351-46441370 None:intergenic 60.0%
AGGAGGAATGGCAGAGGGTC+GGG - chr8_4:46441703-46441722 None:intergenic 60.0%
GACCCTCTGCCATTCCTCCT+AGG + chr8_4:46441703-46441722 Msa1328580:CDS 60.0%
GATGGCCGCCACAACTTCAG+AGG - chr8_4:46442094-46442113 None:intergenic 60.0%
GGACGAACTTGCAGTGGTGG+CGG - chr8_4:46442220-46442239 None:intergenic 60.0%
GTTTCAGCTGAGTCGGGAGC+TGG + chr8_4:46443044-46443063 Msa1328580:CDS 60.0%
GGAGGAATGGCAGAGGGTCG+GGG - chr8_4:46441702-46441721 None:intergenic 65.0%
! AGCTCGAGGGGGTGCAGGAA+TGG + chr8_4:46442996-46443015 Msa1328580:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 46439848 46443471 46439848 ID=Msa1328580;Name=Msa1328580
chr8_4 mRNA 46439848 46443471 46439848 ID=Msa1328580-mRNA-1;Parent=Msa1328580;Name=Msa1328580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=486|0.66|0.75|1|0.66|0.75|4|362|471
chr8_4 exon 46439848 46440145 46439848 ID=Msa1328580-mRNA-1:exon:13149;Parent=Msa1328580-mRNA-1
chr8_4 exon 46441231 46441437 46441231 ID=Msa1328580-mRNA-1:exon:13150;Parent=Msa1328580-mRNA-1
chr8_4 exon 46441631 46441724 46441631 ID=Msa1328580-mRNA-1:exon:13151;Parent=Msa1328580-mRNA-1
chr8_4 exon 46441807 46443471 46441807 ID=Msa1328580-mRNA-1:exon:13152;Parent=Msa1328580-mRNA-1
chr8_4 five_prime_UTR 46439848 46440145 46439848 ID=Msa1328580-mRNA-1:five_prime_utr;Parent=Msa1328580-mRNA-1
chr8_4 five_prime_UTR 46441231 46441418 46441231 ID=Msa1328580-mRNA-1:five_prime_utr;Parent=Msa1328580-mRNA-1
chr8_4 CDS 46441419 46441437 46441419 ID=Msa1328580-mRNA-1:cds;Parent=Msa1328580-mRNA-1
chr8_4 CDS 46441631 46441724 46441631 ID=Msa1328580-mRNA-1:cds;Parent=Msa1328580-mRNA-1
chr8_4 CDS 46441807 46443109 46441807 ID=Msa1328580-mRNA-1:cds;Parent=Msa1328580-mRNA-1
chr8_4 three_prime_UTR 46443110 46443471 46443110 ID=Msa1328580-mRNA-1:three_prime_utr;Parent=Msa1328580-mRNA-1
Gene Sequence

>Msa1328580

ATGGGAATGCCCTCTCCCGCTGGGCAAGAAAGTAGGGAGAAAGAGGTTCAGAAGCTGAGAGAAATAAGAGTGCTTGAAGCAGTTTATCCCCGACCCTCTGCCATTCCTCCTAGCCCTTCTGTTTCTTTGGATGTAGAAGAGGAAGAATATGATGATAACAGTACTCCTCTCATCCCAATCATTCCCATCGAGGAGGAAGAGTCTATGACTAATTTGCCTAAATTAGCAGCAGCAGTGAACACTCATCCCAATGTTCAGCCACAGAATTTGCATCAATACATGCCGGCAACAACTTCCAATAGTTCAGACCGTAATTCCCCCCGTACTGTCTCCTCAGATGCTCGTCTAATGCCCTTAGCAGGGGTATCTTCTAGTTTGGAAGCTGACGCAGCTGCAGCCTCTGAAGTTGTGGCGGCCATCTTGAAGAGTAATGAGCAAGCAGGCTTAATTGATATGGATCTACTCGTAAAAATTTTAAATGACCCAAAAATGATTGAGAATTTGATCAATGAGCATGGAGTTGCCGCCACCACTGCAAGTTCGTCCTCAAATTCCATGGTTACACTCACTTCTGGATTGAAAGCTGCTACTCCTTCAGTTCCTTTGTTTACATCTACACTCGATGTGGCAGCTTCTAGGAACTCACACACTAGTTCTGTGGGTTTTTCTGGGTTGAAGCCTGCAATTCCATCAGTTTCATCTTTCAATCCTACATCTGGTAAGCCAACTACTCTGTTTGCTCCTGCAATTCCATCGTATTCAATCGTGTCTTCTGCACATGATAAGCCAGCAACTGCGTCAGCTCCATTGTCTAGGCCAGTATCCAGTAAACCAATATCCCCCTCTGTTTTTATGTCCACACCTACATCTGAACCTCATATGCCCAGACCTGTCAACAATAATTTTCACATGTCAAGTCCAATGTCAACTGCATTACATACTCAGCCTCAGCCAGATTCATTTCTGGCATCTGGGGTGAAGCGATCTGCATCTTTCACTTTTTCTTCTAGTGAACAAAGCACAGTTCCATTGCCTCCTTCTGGGAACTTGCATACTGTTTTGAACAATACACAACCCATTGCTAGTACAAAGCCTTATCAAACAAGTTCAGGTTCAGCATCTGCTGTAAAGGATGCTAACTATTATAAAAACCTCATTAGGCAACATGGTGCAGATGGGCAAGATAAGCTGGACTCACAAATAGGTAGCCGTCATAGTAACTTCCAAGATATGAAATTGGCACATAACAATAATCAAGGGGAAGTCAAATACAAAAGCAAGAAACAATGCATTTACTTTAATAGCTCGAGGGGGTGCAGGAATGGTTCCGATTGCCCCTTTCAGCATGATGTTTCAGCTGAGTCGGGAGCTGGTAACTTCCTAGGGGGGCAGAGTGCTAAAAGATTTAAGTTGTGA
Protein sequence

>Msa1328580

MGMPSPAGQESREKEVQKLREIRVLEAVYPRPSAIPPSPSVSLDVEEEEYDDNSTPLIPIIPIEEEESMTNLPKLAAAVNTHPNVQPQNLHQYMPATTSNSSDRNSPRTVSSDARLMPLAGVSSSLEADAAAASEVVAAILKSNEQAGLIDMDLLVKILNDPKMIENLINEHGVAATTASSSSNSMVTLTSGLKAATPSVPLFTSTLDVAASRNSHTSSVGFSGLKPAIPSVSSFNPTSGKPTTLFAPAIPSYSIVSSAHDKPATASAPLSRPVSSKPISPSVFMSTPTSEPHMPRPVNNNFHMSSPMSTALHTQPQPDSFLASGVKRSASFTFSSSEQSTVPLPPSGNLHTVLNNTQPIASTKPYQTSSGSASAVKDANYYKNLIRQHGADGQDKLDSQIGSRHSNFQDMKLAHNNNQGEVKYKSKKQCIYFNSSRGCRNGSDCPFQHDVSAESGAGNFLGGQSAKRFKL*