AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1330390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330390 MtrunA17_Chr4g0058631 93.082 318 19 1 7 321 44 361 0.0 593
Msa1330390 MtrunA17_Chr3g0117091 51.156 346 100 15 6 321 43 349 5.13e-87 265
Msa1330390 MtrunA17_Chr1g0211161 56.150 187 51 5 6 188 44 203 4.49e-59 189
Msa1330390 MtrunA17_Chr1g0193371 78.788 99 21 0 6 104 43 141 6.68e-52 175
Msa1330390 MtrunA17_Chr7g0270891 84.270 89 14 0 7 95 44 132 5.99e-51 172
Msa1330390 MtrunA17_Chr1g0193801 82.022 89 16 0 7 95 44 132 2.86e-50 171
Msa1330390 MtrunA17_Chr2g0309911 69.892 93 28 0 6 98 42 134 7.14e-45 155
Msa1330390 MtrunA17_Chr7g0247131 69.565 92 28 0 2 93 5 96 5.27e-44 151
Msa1330390 MtrunA17_Chr5g0395281 71.910 89 25 0 6 94 43 131 4.64e-43 150
Msa1330390 MtrunA17_Chr5g0435101 72.619 84 23 0 7 90 43 126 8.96e-43 147
Msa1330390 MtrunA17_Chr5g0410961 71.591 88 25 0 7 94 44 131 1.34e-42 150
Msa1330390 MtrunA17_Chr4g0037141 68.539 89 28 0 7 95 44 132 2.92e-42 147
Msa1330390 MtrunA17_Chr8g0349261 68.132 91 29 0 6 96 45 135 3.00e-42 148
Msa1330390 MtrunA17_Chr8g0385321 72.093 86 24 0 7 92 44 129 5.31e-42 147
Msa1330390 MtrunA17_Chr4g0042671 76.471 85 20 0 7 91 44 128 8.02e-42 149
Msa1330390 MtrunA17_Chr7g0217741 69.892 93 28 0 7 99 44 136 9.15e-42 147
Msa1330390 MtrunA17_Chr7g0271241 79.775 89 18 0 6 94 43 131 9.64e-42 149
Msa1330390 MtrunA17_Chr4g0057031 71.264 87 25 0 6 92 43 129 1.39e-41 145
Msa1330390 MtrunA17_Chr8g0342521 78.049 82 18 0 6 87 43 124 1.67e-41 147
Msa1330390 MtrunA17_Chr3g0115821 69.663 89 27 0 6 94 43 131 2.08e-41 147
Msa1330390 MtrunA17_Chr4g0039971 72.093 86 24 0 6 91 44 129 2.18e-41 147
Msa1330390 MtrunA17_Chr6g0453471 64.706 102 36 0 7 108 44 145 2.64e-41 147
Msa1330390 MtrunA17_Chr3g0131121 57.759 116 36 2 7 115 44 153 2.65e-41 145
Msa1330390 MtrunA17_Chr2g0323411 71.765 85 24 0 7 91 44 128 6.70e-41 145
Msa1330390 MtrunA17_Chr3g0103281 66.346 104 31 2 7 110 44 143 7.36e-41 145
Msa1330390 MtrunA17_Chr4g0048511 69.412 85 26 0 7 91 45 129 1.00e-40 145
Msa1330390 MtrunA17_Chr2g0281071 69.412 85 26 0 7 91 45 129 1.50e-40 144
Msa1330390 MtrunA17_Chr3g0110351 67.021 94 31 0 6 99 43 136 2.05e-40 143
Msa1330390 MtrunA17_Chr3g0121241 69.767 86 26 0 7 92 74 159 2.17e-40 143
Msa1330390 MtrunA17_Chr5g0434571 71.591 88 25 0 6 93 79 166 4.29e-40 144
Msa1330390 MtrunA17_Chr2g0330041 77.108 83 19 0 6 88 43 125 5.22e-40 144
Msa1330390 MtrunA17_Chr8g0342541 75.610 82 20 0 6 87 43 124 7.86e-40 143
Msa1330390 MtrunA17_Chr4g0044421 71.084 83 24 0 7 89 44 126 1.96e-39 137
Msa1330390 MtrunA17_Chr7g0228891 68.539 89 28 0 6 94 43 131 1.04e-38 138
Msa1330390 MtrunA17_Chr4g0032401 82.192 73 13 0 7 79 49 121 1.24e-38 139
Msa1330390 MtrunA17_Chr3g0088461 83.562 73 12 0 7 79 54 126 1.82e-38 139
Msa1330390 MtrunA17_Chr2g0328771 80.822 73 14 0 7 79 52 124 2.47e-38 138
Msa1330390 MtrunA17_Chr8g0342481 80.000 75 15 0 6 80 44 118 2.86e-38 140
Msa1330390 MtrunA17_Chr6g0452271 62.921 89 33 0 7 95 44 132 1.45e-37 136
Msa1330390 MtrunA17_Chr7g0274581 74.667 75 19 0 7 81 44 118 4.93e-37 131
Msa1330390 MtrunA17_Chr8g0387421 75.000 76 19 0 7 82 44 119 9.00e-37 134
Msa1330390 MtrunA17_Chr5g0417821 68.675 83 26 0 9 91 41 123 2.14e-36 132
Msa1330390 MtrunA17_Chr6g0470971 74.667 75 19 0 7 81 46 120 1.73e-35 129
Msa1330390 MtrunA17_Chr1g0187761 75.676 74 18 0 6 79 43 116 1.88e-35 129
Msa1330390 MtrunA17_Chr2g0323351 50.820 122 53 1 6 127 43 157 4.88e-35 127
Msa1330390 MtrunA17_Chr1g0203441 64.045 89 31 1 7 95 45 132 2.02e-34 126
Msa1330390 MtrunA17_Chr8g0343831 43.114 167 89 2 7 167 40 206 2.16e-34 126
Msa1330390 MtrunA17_Chr1g0167661 72.973 74 20 0 7 80 44 117 2.16e-34 126
Msa1330390 MtrunA17_Chr4g0070641 72.603 73 20 0 7 79 44 116 2.92e-34 123
Msa1330390 MtrunA17_Chr1g0167691 71.622 74 21 0 7 80 44 117 3.78e-34 125
Msa1330390 MtrunA17_Chr4g0022931 67.568 74 24 0 6 79 44 117 4.54e-34 125
Msa1330390 MtrunA17_Chr5g0397231 79.104 67 14 0 7 73 44 110 5.27e-34 127
Msa1330390 MtrunA17_Chr4g0070611 72.603 73 20 0 7 79 44 116 6.51e-34 126
Msa1330390 MtrunA17_Chr1g0203411 73.973 73 19 0 7 79 44 116 8.83e-34 125
Msa1330390 MtrunA17_Chr4g0055981 75.000 72 18 0 7 78 87 158 9.03e-34 124
Msa1330390 MtrunA17_Chr7g0261281 71.233 73 21 0 7 79 44 116 1.31e-33 124
Msa1330390 MtrunA17_Chr8g0346561 66.667 84 26 1 7 88 44 127 1.90e-33 125
Msa1330390 MtrunA17_Chr4g0022901 66.667 75 25 0 6 80 44 118 2.56e-33 124
Msa1330390 MtrunA17_Chr7g0275911 67.105 76 25 0 7 82 44 119 2.27e-32 120
Msa1330390 MtrunA17_Chr1g0151941 57.955 88 34 2 7 94 45 129 6.45e-32 119
Msa1330390 MtrunA17_Chr5g0400821 69.863 73 22 0 8 80 46 118 9.07e-32 120
Msa1330390 MtrunA17_Chr4g0068061 69.863 73 22 0 7 79 44 116 1.27e-31 120
Msa1330390 MtrunA17_Chr4g0022911 62.667 75 28 0 6 80 44 118 1.56e-31 119
Msa1330390 MtrunA17_Chr1g0152011 69.863 73 22 0 8 80 46 118 2.28e-31 120
Msa1330390 MtrunA17_Chr1g0194951 50.000 122 51 1 7 128 44 155 2.29e-31 120
Msa1330390 MtrunA17_Chr3g0093811 55.914 93 41 0 5 97 12 104 2.93e-31 118
Msa1330390 MtrunA17_Chr4g0022891 48.739 119 54 2 6 120 43 158 7.89e-31 116
Msa1330390 MtrunA17_Chr2g0311221 73.134 67 18 0 7 73 46 112 1.09e-30 118
Msa1330390 MtrunA17_Chr4g0028311 62.651 83 30 1 7 89 45 126 1.31e-30 117
Msa1330390 MtrunA17_Chr7g0217221 68.000 75 24 0 7 81 44 118 2.02e-30 116
Msa1330390 MtrunA17_Chr1g0186061 67.123 73 24 0 6 78 51 123 4.52e-30 114
Msa1330390 MtrunA17_Chr3g0099131 62.821 78 28 1 7 84 73 149 5.89e-30 119
Msa1330390 MtrunA17_Chr7g0240821 61.333 75 29 0 5 79 31 105 6.20e-30 114
Msa1330390 MtrunA17_Chr3g0135311 64.384 73 26 0 8 80 46 118 9.68e-30 115
Msa1330390 MtrunA17_Chr1g0168661 67.123 73 24 0 6 78 52 124 1.38e-29 113
Msa1330390 MtrunA17_Chr1g0154031 66.667 72 24 0 7 78 108 179 2.80e-29 115
Msa1330390 MtrunA17_Chr4g0022881 63.889 72 26 0 6 77 43 114 2.92e-29 112
Msa1330390 MtrunA17_Chr3g0080861 66.667 72 24 0 7 78 69 140 4.73e-29 116
Msa1330390 MtrunA17_Chr8g0354661 65.278 72 25 0 7 78 69 140 6.06e-29 116
Msa1330390 MtrunA17_Chr7g0254411 59.140 93 33 2 7 97 44 133 8.04e-29 113
Msa1330390 MtrunA17_Chr3g0092401 65.333 75 26 0 7 81 45 119 1.89e-28 111
Msa1330390 MtrunA17_Chr4g0060721 57.647 85 30 1 7 85 45 129 2.89e-28 111
Msa1330390 MtrunA17_Chr4g0030881 64.286 70 25 0 9 78 48 117 7.63e-28 108
Msa1330390 MtrunA17_Chr7g0228231 60.274 73 29 0 7 79 46 118 1.11e-27 107
Msa1330390 MtrunA17_Chr1g0209661 53.571 84 39 0 7 90 59 142 1.31e-27 109
Msa1330390 MtrunA17_Chr1g0180391 58.228 79 32 1 6 83 50 128 1.37e-27 107
Msa1330390 MtrunA17_Chr6g0450101 60.274 73 29 0 7 79 46 118 1.72e-27 106
Msa1330390 MtrunA17_Chr4g0054391 69.231 65 20 0 8 72 46 110 2.24e-27 108
Msa1330390 MtrunA17_Chr6g0453211 68.657 67 21 0 7 73 44 110 3.13e-27 108
Msa1330390 MtrunA17_Chr1g0194301 59.740 77 27 1 7 83 65 137 4.01e-27 107
Msa1330390 MtrunA17_Chr7g0220341 59.211 76 31 0 7 82 59 134 4.02e-27 107
Msa1330390 MtrunA17_Chr2g0327821 60.274 73 29 0 6 78 37 109 4.53e-27 106
Msa1330390 MtrunA17_Chr2g0327351 64.179 67 24 0 7 73 45 111 4.77e-27 108
Msa1330390 MtrunA17_Chr2g0322521 69.444 72 22 0 7 78 61 132 5.35e-27 109
Msa1330390 MtrunA17_Chr5g0434931 53.846 78 36 0 7 84 67 144 5.79e-27 107
Msa1330390 MtrunA17_Chr7g0264641 58.904 73 30 0 8 80 46 118 8.19e-27 106
Msa1330390 MtrunA17_Chr7g0229131 39.130 161 84 6 6 158 3 157 9.07e-27 103
Msa1330390 MtrunA17_Chr4g0072751 65.152 66 23 0 8 73 46 111 9.63e-27 107
Msa1330390 MtrunA17_Chr1g0194291 62.500 72 27 0 7 78 53 124 9.68e-27 106
Msa1330390 MtrunA17_Chr7g0229101 59.722 72 29 0 5 76 2 73 1.55e-26 104
Msa1330390 MtrunA17_Chr5g0434911 56.579 76 33 0 7 82 53 128 1.59e-26 105
Msa1330390 MtrunA17_Chr8g0360111 63.768 69 25 0 7 75 57 125 1.76e-26 105
Msa1330390 MtrunA17_Chr5g0434831 58.108 74 31 0 7 80 39 112 1.90e-26 103
Msa1330390 MtrunA17_Chr6g0487491 54.878 82 29 1 7 80 45 126 5.98e-26 103
Msa1330390 MtrunA17_Chr7g0269831 48.780 123 61 2 7 128 44 165 6.69e-26 105
Msa1330390 MtrunA17_Chr5g0434841 53.947 76 35 0 7 82 52 127 2.73e-25 103
Msa1330390 MtrunA17_Chr5g0434901 56.944 72 31 0 5 76 3 74 3.07e-25 97.8
Msa1330390 MtrunA17_Chr7g0228991 55.405 74 33 0 9 82 63 136 8.21e-25 101
Msa1330390 MtrunA17_Chr1g0192411 51.136 88 37 1 9 90 46 133 1.19e-23 100
Msa1330390 MtrunA17_Chr5g0440781 40.000 130 69 4 7 129 44 171 1.53e-23 95.5
Msa1330390 MtrunA17_Chr8g0334881 61.429 70 26 1 9 77 44 113 3.37e-23 97.8
Msa1330390 MtrunA17_Chr5g0441141 40.000 130 69 4 7 129 44 171 5.82e-23 96.3
Msa1330390 MtrunA17_Chr5g0440761 40.000 130 69 4 7 129 44 171 5.88e-23 95.9
Msa1330390 MtrunA17_Chr4g0068921 60.526 76 29 1 7 82 56 130 1.43e-22 93.2
Msa1330390 MtrunA17_Chr3g0117511 36.054 147 88 4 11 154 216 359 2.82e-22 96.7
Msa1330390 MtrunA17_Chr2g0293911 60.563 71 28 0 7 77 56 126 7.37e-22 94.0
Msa1330390 MtrunA17_Chr4g0013361 42.500 120 64 3 9 127 44 159 1.19e-21 92.8
Msa1330390 MtrunA17_Chr5g0441131 50.617 81 38 2 7 86 41 120 2.77e-21 89.4
Msa1330390 MtrunA17_Chr4g0008551 51.899 79 34 1 11 89 71 145 3.62e-21 92.4
Msa1330390 MtrunA17_Chr3g0133601 52.564 78 35 1 1 78 62 137 4.49e-21 90.1
Msa1330390 MtrunA17_Chr5g0429661 48.052 77 38 1 2 78 148 222 4.65e-21 92.4
Msa1330390 MtrunA17_Chr8g0342531 75.510 49 12 0 6 54 43 91 7.95e-21 87.8
Msa1330390 MtrunA17_Chr1g0177901 50.685 73 34 1 2 74 20 90 1.05e-20 88.6
Msa1330390 MtrunA17_Chr5g0401731 50.000 86 43 0 11 96 48 133 1.27e-20 90.5
Msa1330390 MtrunA17_Chr2g0323321 75.510 49 12 0 7 55 43 91 1.47e-20 85.5
Msa1330390 MtrunA17_Chr7g0238631 48.000 100 45 3 1 95 138 235 2.07e-20 91.7
Msa1330390 MtrunA17_Chr8g0342461 73.469 49 13 0 6 54 44 92 3.82e-20 85.1
Msa1330390 MtrunA17_Chr8g0342471 73.469 49 13 0 6 54 44 92 4.69e-20 84.7
Msa1330390 MtrunA17_Chr7g0228401 38.333 120 71 2 11 129 312 429 7.32e-20 90.1
Msa1330390 MtrunA17_Chr8g0342511 80.000 45 9 0 6 50 43 87 8.16e-20 82.8
Msa1330390 MtrunA17_Chr4g0058991 47.222 72 38 0 11 82 242 313 1.41e-19 89.0
Msa1330390 MtrunA17_Chr4g0053431 57.353 68 29 0 11 78 38 105 1.66e-19 86.7
Msa1330390 MtrunA17_Chr4g0042501 46.341 82 42 1 1 82 130 209 2.16e-19 88.2
Msa1330390 MtrunA17_Chr5g0417621 45.122 82 43 1 1 82 159 238 2.30e-19 88.2
Msa1330390 MtrunA17_Chr4g0042611 75.556 45 11 0 7 51 44 88 3.29e-19 80.9
Msa1330390 MtrunA17_Chr3g0139671 53.623 69 32 0 11 79 118 186 5.17e-19 87.8
Msa1330390 MtrunA17_Chr6g0480581 48.684 76 37 1 2 77 30 103 5.37e-19 84.7
Msa1330390 MtrunA17_Chr6g0454921 54.412 68 31 0 11 78 48 115 1.03e-18 83.2
Msa1330390 MtrunA17_Chr3g0099141 64.000 50 18 0 8 57 73 122 1.35e-18 80.9
Msa1330390 MtrunA17_Chr1g0157731 52.174 69 33 0 11 79 124 192 2.34e-18 85.9
Msa1330390 MtrunA17_Chr7g0233061 37.624 101 58 2 2 99 204 302 2.36e-18 84.7
Msa1330390 MtrunA17_Chr5g0395221 73.333 45 12 0 7 51 44 88 4.13e-18 77.8
Msa1330390 MtrunA17_Chr5g0437321 56.923 65 28 0 11 75 52 116 9.91e-18 82.0
Msa1330390 MtrunA17_Chr7g0228531 40.741 81 45 2 2 82 246 323 1.98e-17 82.4
Msa1330390 MtrunA17_Chr6g0460661 46.479 71 36 1 2 72 42 110 3.09e-17 77.8
Msa1330390 MtrunA17_Chr7g0254261 39.423 104 61 1 1 104 114 215 4.51e-17 80.9
Msa1330390 MtrunA17_Chr2g0294811 71.111 45 13 0 7 51 44 88 1.03e-16 75.1
Msa1330390 MtrunA17_Chr5g0395231 62.745 51 19 0 41 91 5 55 7.59e-16 75.9
Msa1330390 MtrunA17_Chr3g0125801 45.679 81 42 1 2 82 42 120 7.80e-16 76.6
Msa1330390 MtrunA17_Chr6g0460671 45.588 68 37 0 11 78 132 199 3.51e-15 75.5
Msa1330390 MtrunA17_Chr7g0238651 31.746 126 75 3 9 125 41 164 6.52e-15 74.7
Msa1330390 MtrunA17_Chr5g0397841 46.774 62 33 0 11 72 143 204 7.53e-15 75.1
Msa1330390 MtrunA17_Chr7g0228481 38.824 85 46 3 2 83 246 327 8.52e-15 74.7
Msa1330390 MtrunA17_Chr4g0042621 69.565 46 13 1 47 91 9 54 3.33e-14 72.4
Msa1330390 MtrunA17_Chr5g0434871 59.091 44 18 0 37 80 2 45 3.50e-14 66.6
Msa1330390 MtrunA17_Chr6g0453751 52.830 53 24 1 7 58 60 112 1.82e-13 66.6
Msa1330390 MtrunA17_Chr3g0145551 71.053 38 11 0 55 92 2 39 2.96e-13 64.7
Msa1330390 MtrunA17_Chr5g0416341 41.538 65 38 0 14 78 62 126 6.22e-12 66.2
Msa1330390 MtrunA17_Chr2g0322831 58.537 41 17 0 33 73 34 74 8.67e-12 60.5
Msa1330390 MtrunA17_Chr3g0104491 37.313 67 38 1 16 78 1 67 2.63e-11 63.2
Msa1330390 MtrunA17_Chr5g0425591 47.170 53 27 1 7 58 41 93 6.87e-11 58.2
Msa1330390 MtrunA17_Chr8g0362231 41.667 72 41 1 14 85 58 128 8.94e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330390 AT5G26660.1 70.796 113 33 0 6 118 43 155 3.03e-51 173
Msa1330390 AT5G26660.2 71.171 111 32 0 8 118 14 124 3.13e-51 172
Msa1330390 AT1G57560.2 67.568 111 34 1 6 116 43 151 1.94e-50 169
Msa1330390 AT1G57560.1 76.289 97 22 1 6 102 43 138 2.43e-50 170
Msa1330390 AT4G01680.3 85.227 88 13 0 7 94 44 131 1.44e-49 166
Msa1330390 AT4G01680.2 78.571 98 21 0 5 102 54 151 7.14e-49 167
Msa1330390 AT4G01680.1 85.227 88 13 0 7 94 44 131 8.67e-49 166
Msa1330390 AT1G09540.1 76.667 90 21 0 6 95 43 132 1.22e-46 161
Msa1330390 AT3G12720.1 76.190 84 20 0 6 89 53 136 1.24e-45 157
Msa1330390 AT4G34990.1 60.714 112 43 1 7 117 44 155 6.93e-44 152
Msa1330390 AT3G61250.1 65.686 102 35 0 6 107 43 144 2.21e-43 151
Msa1330390 AT4G12350.1 70.330 91 27 0 6 96 43 133 5.88e-43 150
Msa1330390 AT3G13540.1 48.718 156 63 4 7 154 55 201 1.16e-42 148
Msa1330390 AT4G38620.1 61.616 99 38 0 7 105 44 142 2.55e-42 148
Msa1330390 AT5G10280.1 69.231 91 28 0 6 96 43 133 5.01e-42 149
Msa1330390 AT5G56110.1 66.346 104 31 2 7 110 44 143 6.68e-42 148
Msa1330390 AT4G22680.1 70.787 89 26 0 6 94 43 131 9.85e-42 146
Msa1330390 AT5G16600.1 63.810 105 38 0 6 110 43 147 1.21e-41 147
Msa1330390 AT5G65230.1 69.663 89 27 0 6 94 43 131 1.38e-41 147
Msa1330390 AT4G21440.1 72.941 85 23 0 7 91 44 128 1.53e-41 147
Msa1330390 AT2G16720.1 65.625 96 33 0 7 102 44 139 1.77e-41 145
Msa1330390 AT1G74430.1 69.231 91 28 0 7 97 44 134 2.01e-41 145
Msa1330390 AT5G62320.1 57.547 106 45 0 6 111 51 156 2.43e-41 144
Msa1330390 AT4G05100.1 70.588 85 25 0 7 91 45 129 3.05e-41 146
Msa1330390 AT1G22640.1 60.194 103 38 1 7 106 44 146 3.30e-41 144
Msa1330390 AT1G66230.1 63.551 107 36 1 6 109 43 149 6.62e-41 144
Msa1330390 AT5G16770.4 68.182 88 28 0 7 94 44 131 7.10e-41 145
Msa1330390 AT5G16770.3 68.182 88 28 0 7 94 44 131 7.10e-41 145
Msa1330390 AT5G15310.4 69.231 91 28 0 7 97 44 134 8.65e-41 143
Msa1330390 AT5G16770.1 68.182 88 28 0 7 94 44 131 1.20e-40 145
Msa1330390 AT5G16770.2 68.182 88 28 0 7 94 44 131 1.20e-40 145
Msa1330390 AT5G15310.2 69.231 91 28 0 7 97 44 134 1.37e-40 144
Msa1330390 AT5G15310.1 69.231 91 28 0 7 97 44 134 1.50e-40 144
Msa1330390 AT5G54230.1 71.765 85 24 0 7 91 44 128 1.53e-40 144
Msa1330390 AT4G17785.2 67.045 88 29 0 6 93 44 131 4.59e-40 144
Msa1330390 AT3G02940.2 65.909 88 30 0 7 94 44 131 5.49e-40 142
Msa1330390 AT4G28110.1 68.235 85 27 0 7 91 44 128 5.55e-40 142
Msa1330390 AT4G17785.1 67.045 88 29 0 6 93 44 131 6.11e-40 144
Msa1330390 AT5G12870.1 82.667 75 13 0 7 81 50 124 7.57e-40 141
Msa1330390 AT1G18570.1 65.263 95 33 0 7 101 45 139 8.63e-40 143
Msa1330390 AT4G09460.1 66.292 89 30 0 7 95 44 132 9.43e-40 140
Msa1330390 AT3G01140.2 72.619 84 23 0 7 90 44 127 9.45e-40 143
Msa1330390 AT3G02940.1 65.909 88 30 0 7 94 44 131 9.80e-40 142
Msa1330390 AT3G02940.3 65.909 88 30 0 7 94 44 131 9.80e-40 142
Msa1330390 AT3G01140.1 72.619 84 23 0 7 90 87 170 3.34e-39 142
Msa1330390 AT1G34670.1 65.934 91 31 0 6 96 43 133 5.31e-39 141
Msa1330390 AT1G18710.1 64.773 88 31 0 7 94 44 131 8.38e-39 138
Msa1330390 AT1G35515.1 66.667 87 29 0 8 94 45 131 9.31e-39 136
Msa1330390 AT5G61420.2 65.169 89 31 0 7 95 44 132 9.42e-39 140
Msa1330390 AT5G60890.1 67.442 86 28 0 7 92 44 129 1.73e-38 138
Msa1330390 AT3G13890.2 81.081 74 14 0 7 80 44 117 2.99e-38 139
Msa1330390 AT5G07700.1 64.045 89 32 0 7 95 44 132 8.79e-38 137
Msa1330390 AT5G07700.2 64.045 89 32 0 7 95 44 132 8.79e-38 137
Msa1330390 AT1G74080.1 65.217 92 32 0 7 98 44 135 8.87e-38 137
Msa1330390 AT5G07690.1 66.667 87 29 0 7 93 44 130 1.28e-37 137
Msa1330390 AT5G14340.1 61.538 104 32 1 6 109 55 150 2.30e-37 135
Msa1330390 AT1G63910.1 70.588 85 25 0 7 91 44 128 2.34e-37 137
Msa1330390 AT3G08500.1 82.192 73 13 0 7 79 62 134 4.35e-37 135
Msa1330390 AT3G13890.1 81.944 72 13 0 9 80 55 126 5.35e-37 136
Msa1330390 AT2G31180.1 50.000 140 61 2 7 137 44 183 7.18e-36 130
Msa1330390 AT3G23250.1 42.581 155 70 3 7 148 44 192 1.40e-35 130
Msa1330390 AT1G06180.1 75.676 74 18 0 6 79 43 116 1.68e-35 129
Msa1330390 AT3G28470.1 54.545 121 55 0 7 127 44 164 1.01e-34 129
Msa1330390 AT5G14750.1 68.493 73 23 0 7 79 48 120 1.51e-33 122
Msa1330390 AT1G56160.1 72.973 74 20 0 6 79 45 118 2.03e-33 125
Msa1330390 AT3G12820.1 68.831 77 24 0 6 82 45 121 2.91e-33 123
Msa1330390 AT1G16490.1 71.233 73 21 0 7 79 46 118 4.28e-33 123
Msa1330390 AT1G79180.1 72.603 73 20 0 7 79 46 118 2.19e-32 122
Msa1330390 AT5G40330.1 67.123 73 24 0 7 79 44 116 2.98e-32 120
Msa1330390 AT3G27920.1 64.865 74 26 0 7 80 46 119 3.03e-32 120
Msa1330390 AT5G55020.1 69.231 78 23 1 7 84 58 134 4.08e-32 125
Msa1330390 AT5G35550.2 66.667 81 27 0 1 81 43 123 6.38e-32 120
Msa1330390 AT5G14750.3 69.565 69 21 0 11 79 18 86 7.88e-32 117
Msa1330390 AT3G12820.2 69.444 72 22 0 11 82 2 73 1.00e-31 117
Msa1330390 AT5G65790.1 58.065 93 34 1 8 100 46 133 1.07e-31 122
Msa1330390 AT5G52600.1 54.902 102 37 1 7 99 44 145 1.49e-31 117
Msa1330390 AT5G35550.1 70.667 75 22 0 7 81 46 120 1.76e-31 119
Msa1330390 AT3G49690.1 66.667 75 25 0 8 82 46 120 1.86e-31 120
Msa1330390 AT1G79180.2 72.222 72 20 0 8 79 80 151 2.00e-31 120
Msa1330390 AT2G26960.1 69.014 71 22 0 7 77 52 122 2.65e-31 122
Msa1330390 AT4G25560.1 70.667 75 22 0 7 81 42 116 2.90e-31 119
Msa1330390 AT2G47460.1 69.863 73 22 0 7 79 44 116 4.75e-31 120
Msa1330390 AT5G57620.1 68.493 73 23 0 8 80 46 118 6.74e-31 119
Msa1330390 AT3G62610.1 51.887 106 51 0 7 112 44 149 9.42e-31 119
Msa1330390 AT5G52260.1 70.130 77 23 0 5 81 42 118 1.11e-30 117
Msa1330390 AT4G37780.1 66.234 77 25 1 8 83 46 122 2.58e-30 117
Msa1330390 AT1G22640.3 55.056 89 37 1 21 106 1 89 2.58e-30 114
Msa1330390 AT3G48920.1 66.234 77 25 1 7 82 50 126 3.73e-30 115
Msa1330390 AT3G01530.1 63.014 73 27 0 7 79 57 129 4.00e-30 114
Msa1330390 AT5G49330.1 68.493 73 23 0 7 79 44 116 4.02e-30 117
Msa1330390 AT5G23000.1 64.865 74 26 0 7 80 45 118 4.90e-30 117
Msa1330390 AT5G06100.1 66.667 72 24 0 7 78 64 135 5.46e-30 119
Msa1330390 AT4G26930.1 65.789 76 25 1 9 84 53 127 1.15e-29 117
Msa1330390 AT5G06100.5 66.667 72 24 0 7 78 64 135 1.47e-29 118
Msa1330390 AT5G06100.2 66.667 72 24 0 7 78 64 135 1.47e-29 118
Msa1330390 AT5G06100.3 66.667 72 24 0 7 78 64 135 1.47e-29 118
Msa1330390 AT5G06100.4 66.667 72 24 0 7 78 64 135 1.47e-29 118
Msa1330390 AT2G32460.1 66.667 72 24 0 7 78 50 121 1.57e-29 118
Msa1330390 AT2G32460.2 66.667 72 24 0 7 78 38 109 1.85e-29 117
Msa1330390 AT3G11440.2 63.889 72 26 0 7 78 73 144 1.99e-29 117
Msa1330390 AT5G40350.2 59.211 76 31 0 8 83 5 80 2.54e-29 110
Msa1330390 AT3G47600.1 65.333 75 26 0 7 81 44 118 3.74e-29 114
Msa1330390 AT1G74650.1 67.568 74 24 0 7 80 44 117 3.85e-29 114
Msa1330390 AT5G40350.1 58.442 77 32 0 7 83 49 125 4.06e-29 111
Msa1330390 AT3G11440.3 65.714 70 24 0 9 78 75 144 4.32e-29 117
Msa1330390 AT3G11440.4 65.714 70 24 0 9 78 75 144 4.32e-29 117
Msa1330390 AT3G11440.1 65.714 70 24 0 9 78 75 144 4.32e-29 117
Msa1330390 AT3G47600.2 66.216 74 25 0 8 81 39 112 5.17e-29 114
Msa1330390 AT3G46130.3 59.036 83 32 1 7 87 9 91 6.77e-29 111
Msa1330390 AT4G13480.1 52.381 105 38 2 6 103 37 136 9.34e-29 112
Msa1330390 AT5G62470.2 65.333 75 26 0 7 81 44 118 9.59e-29 114
Msa1330390 AT3G53200.1 44.203 138 75 2 5 141 39 175 1.02e-28 111
Msa1330390 AT3G27810.2 54.321 81 37 0 8 88 4 84 1.34e-28 108
Msa1330390 AT3G46130.1 58.333 84 33 1 6 87 40 123 1.65e-28 111
Msa1330390 AT2G36890.1 56.627 83 36 0 7 89 45 127 1.71e-28 112
Msa1330390 AT1G25340.1 55.952 84 37 0 7 90 50 133 1.75e-28 111
Msa1330390 AT3G24310.1 65.753 73 25 0 6 78 49 121 1.96e-28 111
Msa1330390 AT3G53200.2 44.444 135 73 2 8 141 9 142 2.04e-28 109
Msa1330390 AT3G28910.1 59.302 86 33 1 7 92 44 127 2.04e-28 112
Msa1330390 AT1G08810.1 63.291 79 29 0 7 85 44 122 2.34e-28 111
Msa1330390 AT2G36890.2 56.627 83 36 0 7 89 86 168 3.16e-28 112
Msa1330390 AT5G59780.3 58.333 84 33 1 6 87 39 122 3.48e-28 109
Msa1330390 AT3G27810.1 53.659 82 38 0 7 88 52 133 3.90e-28 109
Msa1330390 AT3G46130.4 58.537 82 32 1 8 87 20 101 4.53e-28 109
Msa1330390 AT1G71030.1 57.143 84 35 1 7 90 13 95 5.98e-28 107
Msa1330390 AT1G71030.2 58.442 77 32 0 14 90 5 81 1.00e-27 107
Msa1330390 AT5G59780.2 58.537 82 32 1 8 87 20 101 1.34e-27 107
Msa1330390 AT3G30210.1 63.380 71 26 0 7 77 59 129 3.83e-27 107
Msa1330390 AT1G48000.1 62.338 77 27 1 7 81 64 140 5.47e-27 106
Msa1330390 AT5G62470.1 66.197 71 24 0 11 81 47 117 5.95e-27 108
Msa1330390 AT1G66380.3 49.057 106 44 1 8 113 8 103 1.22e-26 101
Msa1330390 AT1G68320.1 53.571 84 39 0 7 90 51 134 1.32e-26 106
Msa1330390 AT2G47190.1 59.722 72 29 0 7 78 52 123 1.37e-26 106
Msa1330390 AT1G66370.1 59.722 72 29 0 7 78 40 111 2.11e-26 105
Msa1330390 AT1G25340.2 55.128 78 35 0 13 90 51 128 1.89e-25 103
Msa1330390 AT3G23250.2 38.298 141 68 3 21 148 1 135 2.14e-25 102
Msa1330390 AT1G66380.1 48.598 107 45 1 7 113 40 136 3.40e-25 99.0
Msa1330390 AT1G25340.3 55.128 78 35 0 13 90 51 128 4.17e-25 103
Msa1330390 AT1G18960.1 50.000 86 41 1 8 93 40 123 7.50e-24 99.8
Msa1330390 AT5G14750.4 64.407 59 21 0 21 79 1 59 8.68e-23 92.4
Msa1330390 AT5G14750.2 64.407 59 21 0 21 79 1 59 8.68e-23 92.4
Msa1330390 AT1G56650.1 46.226 106 47 1 7 112 40 135 1.12e-22 95.1
Msa1330390 AT2G26950.1 51.282 78 37 1 7 84 48 124 1.66e-22 97.1
Msa1330390 AT3G06490.1 61.972 71 27 0 7 77 51 121 2.10e-22 95.9
Msa1330390 AT3G60460.1 61.429 70 26 1 9 77 45 114 7.15e-22 94.0
Msa1330390 AT3G55730.1 53.398 103 42 3 11 110 89 188 8.12e-22 95.5
Msa1330390 AT1G66390.1 61.111 72 28 0 7 78 40 111 1.10e-21 92.4
Msa1330390 AT2G39880.1 61.111 72 28 0 11 82 83 154 4.04e-21 92.8
Msa1330390 AT4G18770.1 41.584 101 56 2 2 101 243 341 1.12e-20 92.4
Msa1330390 AT5G49620.1 60.870 69 27 0 9 77 60 128 1.13e-20 90.9
Msa1330390 AT3G09230.1 55.714 70 31 0 11 80 88 157 1.63e-20 91.7
Msa1330390 AT2G25230.1 43.333 90 48 2 11 98 59 147 1.77e-20 89.0
Msa1330390 AT5G58850.1 47.436 78 39 1 1 78 130 205 5.73e-20 90.5
Msa1330390 AT3G27785.1 46.753 77 39 1 2 78 215 289 1.81e-19 89.0
Msa1330390 AT4G37260.1 54.795 73 33 0 11 83 46 118 2.51e-19 87.4
Msa1330390 AT1G69560.1 45.122 82 43 1 1 82 132 211 3.79e-19 87.0
Msa1330390 AT5G11510.3 50.000 78 37 1 2 79 107 182 3.98e-19 88.6
Msa1330390 AT5G11510.1 50.000 78 37 1 2 79 107 182 3.98e-19 88.6
Msa1330390 AT5G11510.4 50.000 78 37 1 2 79 107 182 3.98e-19 88.6
Msa1330390 AT1G69560.2 45.122 82 43 1 1 82 148 227 5.19e-19 86.7
Msa1330390 AT3G09370.1 46.739 92 43 2 1 88 155 244 5.33e-19 87.8
Msa1330390 AT5G11510.2 50.000 78 37 1 2 79 107 182 5.45e-19 88.2
Msa1330390 AT3G09370.2 46.739 92 43 2 1 88 160 249 5.92e-19 87.8
Msa1330390 AT5G11510.5 50.000 78 37 1 2 79 107 182 6.01e-19 88.2
Msa1330390 AT5G11050.1 46.154 78 40 1 1 78 130 205 7.87e-19 87.0
Msa1330390 AT5G02320.1 53.623 69 32 0 11 79 160 228 8.68e-19 87.4
Msa1330390 AT5G02320.2 53.623 69 32 0 11 79 160 228 8.68e-19 87.4
Msa1330390 AT3G09370.3 46.739 92 43 2 1 88 168 257 1.09e-18 87.0
Msa1330390 AT5G02320.3 53.623 69 32 0 11 79 100 168 1.10e-18 87.0
Msa1330390 AT5G40360.1 44.776 67 37 0 11 77 191 257 1.64e-18 85.5
Msa1330390 AT1G26780.1 46.154 78 40 1 1 78 123 198 1.66e-18 84.3
Msa1330390 AT2G23290.1 57.353 68 29 0 11 78 46 113 2.12e-18 84.3
Msa1330390 AT1G26780.2 46.154 78 40 1 1 78 123 198 2.63e-18 84.7
Msa1330390 AT4G32730.1 47.436 78 39 1 2 79 113 188 8.78e-18 84.7
Msa1330390 AT4G32730.5 47.436 78 39 1 2 79 113 188 9.31e-18 84.7
Msa1330390 AT4G32730.4 47.436 78 39 1 2 79 113 188 9.31e-18 84.7
Msa1330390 AT4G32730.3 47.436 78 39 1 2 79 113 188 9.31e-18 84.7
Msa1330390 AT4G32730.2 47.436 78 39 1 2 79 113 188 9.31e-18 84.7
Msa1330390 AT5G67300.1 54.412 68 31 0 11 78 39 106 1.46e-17 82.0
Msa1330390 AT5G61420.1 63.462 52 19 0 44 95 2 53 1.46e-17 81.6
Msa1330390 AT3G50060.1 52.941 68 32 0 11 78 39 106 1.56e-17 82.0
Msa1330390 AT1G17950.1 45.455 77 40 1 2 78 31 105 2.54e-17 80.5
Msa1330390 AT3G29020.2 45.833 72 39 0 11 82 100 171 2.89e-17 81.3
Msa1330390 AT5G49620.2 50.602 83 27 1 9 77 60 142 3.12e-17 81.3
Msa1330390 AT3G29020.1 45.833 72 39 0 11 82 98 169 5.04e-17 79.3
Msa1330390 AT1G74430.2 60.345 58 23 0 40 97 8 65 5.40e-17 78.6
Msa1330390 AT5G40430.1 42.466 73 42 0 11 83 86 158 9.53e-17 79.0
Msa1330390 AT4G33450.1 45.588 68 37 0 11 78 52 119 1.34e-16 78.6
Msa1330390 AT5G17800.1 44.286 70 39 0 9 78 124 193 4.18e-16 78.2
Msa1330390 AT1G73410.1 47.059 68 36 0 11 78 39 106 1.68e-15 75.1
Msa1330390 AT1G73410.2 47.059 68 36 0 11 78 39 106 4.06e-15 73.2
Msa1330390 AT4G25560.2 64.000 50 18 0 32 81 1 50 4.14e-15 73.6
Msa1330390 AT4G00540.2 46.377 69 37 0 11 79 139 207 7.83e-15 75.1
Msa1330390 AT5G15310.3 65.957 47 16 0 51 97 9 55 8.21e-15 73.2
Msa1330390 AT4G00540.1 46.377 69 37 0 11 79 137 205 1.24e-14 74.7
Msa1330390 AT4G28110.2 65.854 41 14 0 51 91 4 44 1.29e-14 71.6
Msa1330390 AT1G22640.2 50.847 59 26 1 51 106 16 74 2.08e-14 70.9
Msa1330390 AT2G37630.1 46.032 63 34 0 9 71 38 100 1.28e-13 71.2
Msa1330390 AT3G46130.2 53.704 54 23 1 36 87 4 57 4.63e-13 67.4
Msa1330390 AT5G59780.1 50.877 57 26 1 33 87 1 57 9.89e-13 65.9
Msa1330390 AT1G14350.2 44.615 65 36 0 14 78 61 125 2.23e-12 67.8
Msa1330390 AT1G14350.1 44.615 65 36 0 14 78 61 125 2.23e-12 67.8
Msa1330390 AT2G02820.1 41.176 68 40 0 11 78 63 130 2.89e-12 67.4
Msa1330390 AT2G02820.2 41.176 68 40 0 11 78 63 130 3.18e-12 67.4
Msa1330390 AT2G02820.3 43.077 65 37 0 14 78 66 130 4.12e-12 66.6
Msa1330390 AT5G14340.2 50.847 59 21 1 51 109 10 60 1.03e-11 63.2
Msa1330390 AT1G74650.3 65.854 41 14 0 40 80 1 41 2.32e-11 63.5
Msa1330390 AT3G28910.2 54.717 53 22 1 40 92 1 51 3.49e-11 62.8
Msa1330390 AT5G39700.1 37.500 72 45 0 11 82 89 160 3.80e-11 62.0

Find 53 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTGAAAGTGATGTTAA+TGG 0.241227 8_4:+49510536 None:intergenic
ATGGTTGATGAATTTCTTTC+AGG 0.242064 8_4:-49511607 Msa1330390:CDS
GCTATAAAATCTGAAGATTA+TGG 0.250747 8_4:-49510623 Msa1330390:CDS
TTCTGCTATGATTTCCAATC+TGG 0.306161 8_4:-49510989 Msa1330390:CDS
TCGAGTTACTATGATGATAA+TGG 0.318372 8_4:-49511067 Msa1330390:CDS
TTAAGATATGCTTCAGTAAG+AGG 0.318967 8_4:+49511169 None:intergenic
AACATTCCTCTCTTTAAATC+AGG 0.339120 8_4:+49511532 None:intergenic
TTCATGAAGTCCTTGGAAAT+AGG 0.386858 8_4:-49511477 Msa1330390:intron
ATCATCATAGTAACTCGAAT+TGG 0.391555 8_4:+49511072 None:intergenic
GACTCTGATCACATGGTTTG+TGG 0.425354 8_4:+49510933 None:intergenic
GGATGGATCAGAAAACAAAT+TGG 0.426049 8_4:-49510672 Msa1330390:CDS
GTAAGAGGCTTGTGTGTTGT+TGG 0.427629 8_4:+49511184 None:intergenic
CCATGTGATCAGAGTCAATT+CGG 0.429235 8_4:-49510926 Msa1330390:CDS
TTTACTTGGAACTGAAACAT+AGG 0.434255 8_4:+49510647 None:intergenic
AAGATTATGGAACTAGTTCA+TGG 0.437284 8_4:-49510610 Msa1330390:CDS
TGAACAATACAAATATATAT+AGG 0.439216 8_4:+49510430 None:intergenic
AATTTACAATTCATATATGA+TGG 0.450014 8_4:+49510486 None:intergenic
TGAGATGGATAAACTATTTG+AGG 0.450225 8_4:-49511555 Msa1330390:CDS
TCATTGTTCATTAATGATCA+AGG 0.452544 8_4:-49510794 Msa1330390:CDS
TTTCACCAACAAACAAGCAT+TGG 0.454876 8_4:-49511020 Msa1330390:CDS
TAGGTAAGTTATAACCAGAT+TGG 0.455802 8_4:+49510975 None:intergenic
TCTTACTGAAGCATATCTTA+AGG 0.467649 8_4:-49511167 Msa1330390:CDS
ATCAGTCTTCATGAAGTCCT+TGG 0.474400 8_4:-49511484 Msa1330390:CDS
CAAATAGCAGCACAATTACC+AGG 0.477311 8_4:-49511280 Msa1330390:CDS
TCAAATGAGAAGTACTATGA+TGG 0.493294 8_4:-49510720 Msa1330390:CDS
ATGATGGAAAATAACAATGC+AGG 0.493671 8_4:-49510704 Msa1330390:CDS
CTTTCAGGACTTCAAAGATG+TGG 0.499979 8_4:-49511592 Msa1330390:CDS
AGGGTCCAATGCTTGTTTGT+TGG 0.508884 8_4:+49511015 None:intergenic
AAGAAGAAGCTTCTAAAGCA+AGG 0.517547 8_4:-49511214 Msa1330390:CDS
ATAGTACTTCTCATTTGAGA+TGG 0.517884 8_4:+49510725 None:intergenic
GGAAATCATAGCAGAACAAA+GGG 0.529276 8_4:+49510996 None:intergenic
ATTTCATTATCTGTTCTCCC+TGG 0.534130 8_4:+49511262 None:intergenic
TTGAGGCCTGATTTAAAGAG+AGG 0.539010 8_4:-49511538 Msa1330390:CDS
GGAACTAGTTCATGGGAAGA+AGG 0.543673 8_4:-49510602 Msa1330390:CDS
CCGAATTGACTCTGATCACA+TGG 0.550295 8_4:+49510926 None:intergenic
TCTTATGTTACCTATTTCCA+AGG 0.554129 8_4:+49511467 None:intergenic
TGATGGAAAATAACAATGCA+GGG 0.558719 8_4:-49510703 Msa1330390:CDS
TCAAAGTAGAAAATATAGAA+AGG 0.559372 8_4:-49510410 Msa1330390:three_prime_UTR
TGATCTGAATTTGTTAGACT+CGG 0.559414 8_4:+49510872 None:intergenic
CTTGTGTGATCATTACTCAT+AGG 0.561692 8_4:+49510956 None:intergenic
AGAAGAAGCTTCTAAAGCAA+GGG 0.563543 8_4:-49511213 Msa1330390:CDS
CATTGTTCATTAATGATCAA+GGG 0.568836 8_4:-49510793 Msa1330390:CDS
TTACTTGGAACTGAAACATA+GGG 0.577045 8_4:+49510648 None:intergenic
TGGAAATCATAGCAGAACAA+AGG 0.583893 8_4:+49510995 None:intergenic
GAAAGAGTTGTAGATTGAGA+TGG 0.584976 8_4:-49511570 Msa1330390:CDS
TGTGATGGTATTTGCATAGG+TGG 0.620021 8_4:+49511115 None:intergenic
CCATGTGATGGTATTTGCAT+AGG 0.627759 8_4:+49511112 None:intergenic
AGATTATGGAACTAGTTCAT+GGG 0.627814 8_4:-49510609 Msa1330390:CDS
GTTGTCCGAAAACTCTGTCA+CGG 0.647107 8_4:+49510838 None:intergenic
CCTATGCAAATACCATCACA+TGG 0.666893 8_4:-49511112 Msa1330390:CDS
AGAAATGCTGAACCATGTGA+TGG 0.672145 8_4:+49511100 None:intergenic
TCAAAACTAAGAGTCTAACA+TGG 0.674933 8_4:-49511626 Msa1330390:exon
AAATAGCAGCACAATTACCA+GGG 0.695212 8_4:-49511279 Msa1330390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATGAAATTAAAAACTTT+TGG - chr8_4:49510741-49510760 Msa1330390:CDS 10.0%
!!! ATAATGAAATTAAAAACTTT+TGG - chr8_4:49510741-49510760 Msa1330390:CDS 10.0%
!!! TTTCTTTTTTTGAACATTAT+AGG - chr8_4:49510681-49510700 Msa1330390:CDS 15.0%
!! AATTTACAATTCATATATGA+TGG + chr8_4:49511507-49511526 None:intergenic 15.0%
!! TGAACAATACAAATATATAT+AGG + chr8_4:49511563-49511582 None:intergenic 15.0%
!!! TTTCTTTTTTTGAACATTAT+AGG - chr8_4:49510681-49510700 Msa1330390:CDS 15.0%
!! AATTTACAATTCATATATGA+TGG + chr8_4:49511507-49511526 None:intergenic 15.0%
!! TGAACAATACAAATATATAT+AGG + chr8_4:49511563-49511582 None:intergenic 15.0%
!! GTAAATTTGATAAAATCACA+AGG + chr8_4:49510624-49510643 None:intergenic 20.0%
!!! TTTTTTTGAACATTATAGGT+GGG - chr8_4:49510685-49510704 Msa1330390:CDS 20.0%
!! TCAAAGTAGAAAATATAGAA+AGG - chr8_4:49511580-49511599 Msa1330390:CDS 20.0%
!! GTAAATTTGATAAAATCACA+AGG + chr8_4:49510624-49510643 None:intergenic 20.0%
!!! TTTTTTTGAACATTATAGGT+GGG - chr8_4:49510685-49510704 Msa1330390:CDS 20.0%
!! TCAAAGTAGAAAATATAGAA+AGG - chr8_4:49511580-49511599 Msa1330390:CDS 20.0%
! GATTCAATATATATCGTGTT+TGG - chr8_4:49510567-49510586 Msa1330390:CDS 25.0%
!!! CTTTTTTTGAACATTATAGG+TGG - chr8_4:49510684-49510703 Msa1330390:CDS 25.0%
! TCATTGTTCATTAATGATCA+AGG - chr8_4:49511196-49511215 Msa1330390:CDS 25.0%
! CATTGTTCATTAATGATCAA+GGG - chr8_4:49511197-49511216 Msa1330390:CDS 25.0%
!! CAGATTTTATAGCATTTACT+TGG + chr8_4:49511360-49511379 None:intergenic 25.0%
! GCTATAAAATCTGAAGATTA+TGG - chr8_4:49511367-49511386 Msa1330390:intron 25.0%
! GATTCAATATATATCGTGTT+TGG - chr8_4:49510567-49510586 Msa1330390:CDS 25.0%
!!! CTTTTTTTGAACATTATAGG+TGG - chr8_4:49510684-49510703 Msa1330390:CDS 25.0%
! TCATTGTTCATTAATGATCA+AGG - chr8_4:49511196-49511215 Msa1330390:CDS 25.0%
! CATTGTTCATTAATGATCAA+GGG - chr8_4:49511197-49511216 Msa1330390:CDS 25.0%
!! CAGATTTTATAGCATTTACT+TGG + chr8_4:49511360-49511379 None:intergenic 25.0%
! GCTATAAAATCTGAAGATTA+TGG - chr8_4:49511367-49511386 Msa1330390:intron 25.0%
TCAAAACTAAGAGTCTAACA+TGG - chr8_4:49510364-49510383 Msa1330390:three_prime_UTR 30.0%
!! ATGGTTGATGAATTTCTTTC+AGG - chr8_4:49510383-49510402 Msa1330390:three_prime_UTR 30.0%
TGAGATGGATAAACTATTTG+AGG - chr8_4:49510435-49510454 Msa1330390:three_prime_UTR 30.0%
AACATTCCTCTCTTTAAATC+AGG + chr8_4:49510461-49510480 None:intergenic 30.0%
TCTTATGTTACCTATTTCCA+AGG + chr8_4:49510526-49510545 None:intergenic 30.0%
! ATATATCGTGTTTGGAATCA+CGG - chr8_4:49510575-49510594 Msa1330390:CDS 30.0%
TTAAGATATGCTTCAGTAAG+AGG + chr8_4:49510824-49510843 None:intergenic 30.0%
TCTTACTGAAGCATATCTTA+AGG - chr8_4:49510823-49510842 Msa1330390:CDS 30.0%
ATCATCATAGTAACTCGAAT+TGG + chr8_4:49510921-49510940 None:intergenic 30.0%
TCGAGTTACTATGATGATAA+TGG - chr8_4:49510923-49510942 Msa1330390:CDS 30.0%
TAGGTAAGTTATAACCAGAT+TGG + chr8_4:49511018-49511037 None:intergenic 30.0%
!! TGATCTGAATTTGTTAGACT+CGG + chr8_4:49511121-49511140 None:intergenic 30.0%
ATAGTACTTCTCATTTGAGA+TGG + chr8_4:49511268-49511287 None:intergenic 30.0%
!! TCAAATGAGAAGTACTATGA+TGG - chr8_4:49511270-49511289 Msa1330390:CDS 30.0%
! ATGATGGAAAATAACAATGC+AGG - chr8_4:49511286-49511305 Msa1330390:CDS 30.0%
TGATGGAAAATAACAATGCA+GGG - chr8_4:49511287-49511306 Msa1330390:CDS 30.0%
TTACTTGGAACTGAAACATA+GGG + chr8_4:49511345-49511364 None:intergenic 30.0%
TTTACTTGGAACTGAAACAT+AGG + chr8_4:49511346-49511365 None:intergenic 30.0%
AAGATTATGGAACTAGTTCA+TGG - chr8_4:49511380-49511399 Msa1330390:intron 30.0%
AGATTATGGAACTAGTTCAT+GGG - chr8_4:49511381-49511400 Msa1330390:intron 30.0%
! TCTTCTGAAAGTGATGTTAA+TGG + chr8_4:49511457-49511476 None:intergenic 30.0%
TCAAAACTAAGAGTCTAACA+TGG - chr8_4:49510364-49510383 Msa1330390:three_prime_UTR 30.0%
!! ATGGTTGATGAATTTCTTTC+AGG - chr8_4:49510383-49510402 Msa1330390:three_prime_UTR 30.0%
TGAGATGGATAAACTATTTG+AGG - chr8_4:49510435-49510454 Msa1330390:three_prime_UTR 30.0%
AACATTCCTCTCTTTAAATC+AGG + chr8_4:49510461-49510480 None:intergenic 30.0%
TCTTATGTTACCTATTTCCA+AGG + chr8_4:49510526-49510545 None:intergenic 30.0%
! ATATATCGTGTTTGGAATCA+CGG - chr8_4:49510575-49510594 Msa1330390:CDS 30.0%
TTAAGATATGCTTCAGTAAG+AGG + chr8_4:49510824-49510843 None:intergenic 30.0%
TCTTACTGAAGCATATCTTA+AGG - chr8_4:49510823-49510842 Msa1330390:CDS 30.0%
ATCATCATAGTAACTCGAAT+TGG + chr8_4:49510921-49510940 None:intergenic 30.0%
TCGAGTTACTATGATGATAA+TGG - chr8_4:49510923-49510942 Msa1330390:CDS 30.0%
TAGGTAAGTTATAACCAGAT+TGG + chr8_4:49511018-49511037 None:intergenic 30.0%
!! TGATCTGAATTTGTTAGACT+CGG + chr8_4:49511121-49511140 None:intergenic 30.0%
ATAGTACTTCTCATTTGAGA+TGG + chr8_4:49511268-49511287 None:intergenic 30.0%
!! TCAAATGAGAAGTACTATGA+TGG - chr8_4:49511270-49511289 Msa1330390:CDS 30.0%
! ATGATGGAAAATAACAATGC+AGG - chr8_4:49511286-49511305 Msa1330390:CDS 30.0%
TGATGGAAAATAACAATGCA+GGG - chr8_4:49511287-49511306 Msa1330390:CDS 30.0%
TTACTTGGAACTGAAACATA+GGG + chr8_4:49511345-49511364 None:intergenic 30.0%
TTTACTTGGAACTGAAACAT+AGG + chr8_4:49511346-49511365 None:intergenic 30.0%
AAGATTATGGAACTAGTTCA+TGG - chr8_4:49511380-49511399 Msa1330390:intron 30.0%
AGATTATGGAACTAGTTCAT+GGG - chr8_4:49511381-49511400 Msa1330390:intron 30.0%
! TCTTCTGAAAGTGATGTTAA+TGG + chr8_4:49511457-49511476 None:intergenic 30.0%
GAAAGAGTTGTAGATTGAGA+TGG - chr8_4:49510420-49510439 Msa1330390:three_prime_UTR 35.0%
TTCATGAAGTCCTTGGAAAT+AGG - chr8_4:49510513-49510532 Msa1330390:CDS 35.0%
AAATAGCAGCACAATTACCA+GGG - chr8_4:49510711-49510730 Msa1330390:CDS 35.0%
ATTTCATTATCTGTTCTCCC+TGG + chr8_4:49510731-49510750 None:intergenic 35.0%
!! AAGAAGAAGCTTCTAAAGCA+AGG - chr8_4:49510776-49510795 Msa1330390:CDS 35.0%
!! AGAAGAAGCTTCTAAAGCAA+GGG - chr8_4:49510777-49510796 Msa1330390:CDS 35.0%
TTTCACCAACAAACAAGCAT+TGG - chr8_4:49510970-49510989 Msa1330390:CDS 35.0%
GGAAATCATAGCAGAACAAA+GGG + chr8_4:49510997-49511016 None:intergenic 35.0%
TGGAAATCATAGCAGAACAA+AGG + chr8_4:49510998-49511017 None:intergenic 35.0%
TTCTGCTATGATTTCCAATC+TGG - chr8_4:49511001-49511020 Msa1330390:CDS 35.0%
CTTGTGTGATCATTACTCAT+AGG + chr8_4:49511037-49511056 None:intergenic 35.0%
!! ATAACAATGCAGGGTTTTGT+TGG - chr8_4:49511296-49511315 Msa1330390:intron 35.0%
!!! TAACAATGCAGGGTTTTGTT+GGG - chr8_4:49511297-49511316 Msa1330390:intron 35.0%
GGATGGATCAGAAAACAAAT+TGG - chr8_4:49511318-49511337 Msa1330390:intron 35.0%
GAAAGAGTTGTAGATTGAGA+TGG - chr8_4:49510420-49510439 Msa1330390:three_prime_UTR 35.0%
TTCATGAAGTCCTTGGAAAT+AGG - chr8_4:49510513-49510532 Msa1330390:CDS 35.0%
AAATAGCAGCACAATTACCA+GGG - chr8_4:49510711-49510730 Msa1330390:CDS 35.0%
ATTTCATTATCTGTTCTCCC+TGG + chr8_4:49510731-49510750 None:intergenic 35.0%
!! AAGAAGAAGCTTCTAAAGCA+AGG - chr8_4:49510776-49510795 Msa1330390:CDS 35.0%
!! AGAAGAAGCTTCTAAAGCAA+GGG - chr8_4:49510777-49510796 Msa1330390:CDS 35.0%
TTTCACCAACAAACAAGCAT+TGG - chr8_4:49510970-49510989 Msa1330390:CDS 35.0%
GGAAATCATAGCAGAACAAA+GGG + chr8_4:49510997-49511016 None:intergenic 35.0%
TGGAAATCATAGCAGAACAA+AGG + chr8_4:49510998-49511017 None:intergenic 35.0%
TTCTGCTATGATTTCCAATC+TGG - chr8_4:49511001-49511020 Msa1330390:CDS 35.0%
CTTGTGTGATCATTACTCAT+AGG + chr8_4:49511037-49511056 None:intergenic 35.0%
!! ATAACAATGCAGGGTTTTGT+TGG - chr8_4:49511296-49511315 Msa1330390:intron 35.0%
!!! TAACAATGCAGGGTTTTGTT+GGG - chr8_4:49511297-49511316 Msa1330390:intron 35.0%
GGATGGATCAGAAAACAAAT+TGG - chr8_4:49511318-49511337 Msa1330390:intron 35.0%
CTTTCAGGACTTCAAAGATG+TGG - chr8_4:49510398-49510417 Msa1330390:three_prime_UTR 40.0%
TTGAGGCCTGATTTAAAGAG+AGG - chr8_4:49510452-49510471 Msa1330390:three_prime_UTR 40.0%
ATCAGTCTTCATGAAGTCCT+TGG - chr8_4:49510506-49510525 Msa1330390:CDS 40.0%
CAAATAGCAGCACAATTACC+AGG - chr8_4:49510710-49510729 Msa1330390:CDS 40.0%
TGTGATGGTATTTGCATAGG+TGG + chr8_4:49510878-49510897 None:intergenic 40.0%
CCATGTGATGGTATTTGCAT+AGG + chr8_4:49510881-49510900 None:intergenic 40.0%
CCTATGCAAATACCATCACA+TGG - chr8_4:49510878-49510897 Msa1330390:CDS 40.0%
AGAAATGCTGAACCATGTGA+TGG + chr8_4:49510893-49510912 None:intergenic 40.0%
CCATGTGATCAGAGTCAATT+CGG - chr8_4:49511064-49511083 Msa1330390:CDS 40.0%
CTTTCAGGACTTCAAAGATG+TGG - chr8_4:49510398-49510417 Msa1330390:three_prime_UTR 40.0%
TTGAGGCCTGATTTAAAGAG+AGG - chr8_4:49510452-49510471 Msa1330390:three_prime_UTR 40.0%
ATCAGTCTTCATGAAGTCCT+TGG - chr8_4:49510506-49510525 Msa1330390:CDS 40.0%
CAAATAGCAGCACAATTACC+AGG - chr8_4:49510710-49510729 Msa1330390:CDS 40.0%
TGTGATGGTATTTGCATAGG+TGG + chr8_4:49510878-49510897 None:intergenic 40.0%
CCATGTGATGGTATTTGCAT+AGG + chr8_4:49510881-49510900 None:intergenic 40.0%
CCTATGCAAATACCATCACA+TGG - chr8_4:49510878-49510897 Msa1330390:CDS 40.0%
AGAAATGCTGAACCATGTGA+TGG + chr8_4:49510893-49510912 None:intergenic 40.0%
CCATGTGATCAGAGTCAATT+CGG - chr8_4:49511064-49511083 Msa1330390:CDS 40.0%
GTAAGAGGCTTGTGTGTTGT+TGG + chr8_4:49510809-49510828 None:intergenic 45.0%
AGGGTCCAATGCTTGTTTGT+TGG + chr8_4:49510978-49510997 None:intergenic 45.0%
GACTCTGATCACATGGTTTG+TGG + chr8_4:49511060-49511079 None:intergenic 45.0%
! CCGAATTGACTCTGATCACA+TGG + chr8_4:49511067-49511086 None:intergenic 45.0%
! TGTGTCCGTGACAGAGTTTT+CGG - chr8_4:49511147-49511166 Msa1330390:CDS 45.0%
GTTGTCCGAAAACTCTGTCA+CGG + chr8_4:49511155-49511174 None:intergenic 45.0%
!!! AATGCAGGGTTTTGTTGGGA+TGG - chr8_4:49511301-49511320 Msa1330390:intron 45.0%
GGAACTAGTTCATGGGAAGA+AGG - chr8_4:49511388-49511407 Msa1330390:intron 45.0%
GTAAGAGGCTTGTGTGTTGT+TGG + chr8_4:49510809-49510828 None:intergenic 45.0%
AGGGTCCAATGCTTGTTTGT+TGG + chr8_4:49510978-49510997 None:intergenic 45.0%
GACTCTGATCACATGGTTTG+TGG + chr8_4:49511060-49511079 None:intergenic 45.0%
! CCGAATTGACTCTGATCACA+TGG + chr8_4:49511067-49511086 None:intergenic 45.0%
! TGTGTCCGTGACAGAGTTTT+CGG - chr8_4:49511147-49511166 Msa1330390:CDS 45.0%
GTTGTCCGAAAACTCTGTCA+CGG + chr8_4:49511155-49511174 None:intergenic 45.0%
!!! AATGCAGGGTTTTGTTGGGA+TGG - chr8_4:49511301-49511320 Msa1330390:intron 45.0%
GGAACTAGTTCATGGGAAGA+AGG - chr8_4:49511388-49511407 Msa1330390:intron 45.0%
AGATATGATACCCCCTCCCC+CGG - chr8_4:49511642-49511661 Msa1330390:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 49510348 49511664 49510348 ID=Msa1330390;Name=Msa1330390
chr8_4 mRNA 49510348 49511664 49510348 ID=Msa1330390-mRNA-1;Parent=Msa1330390;Name=Msa1330390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=35|1|1|1|1|1|2|148|321
chr8_4 exon 49510348 49511309 49510348 ID=Msa1330390-mRNA-1:exon:14346;Parent=Msa1330390-mRNA-1
chr8_4 exon 49511478 49511664 49511478 ID=Msa1330390-mRNA-1:exon:14345;Parent=Msa1330390-mRNA-1
chr8_4 five_prime_UTR 49511630 49511664 49511630 ID=Msa1330390-mRNA-1:five_prime_utr;Parent=Msa1330390-mRNA-1
chr8_4 CDS 49511478 49511629 49511478 ID=Msa1330390-mRNA-1:cds;Parent=Msa1330390-mRNA-1
chr8_4 CDS 49510496 49511309 49510496 ID=Msa1330390-mRNA-1:cds;Parent=Msa1330390-mRNA-1
chr8_4 three_prime_UTR 49510348 49510495 49510348 ID=Msa1330390-mRNA-1:three_prime_utr;Parent=Msa1330390-mRNA-1
Gene Sequence

>Msa1330390

ATGGTTGATGAATTTCTTTCAGGACTTCAAAGATGTGGAAAGAGTTGTAGATTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCACAACAAGAAGAAGATCTTATAATCAGTCTTCATGAAGTCCTTGGAAATAGGTGGGCTCAAATAGCAGCACAATTACCAGGGAGAACAGATAATGAAATTAAAAACTTTTGGAATTCATGTTTAAAGAAGAAGCTTCTAAAGCAAGGGATTGATCCAACAACACACAAGCCTCTTACTGAAGCATATCTTAAGGAAGAGAACAAAATCACAGAAACAACAGCACCACCTATGCAAATACCATCACATGGTTCAGCATTTCTAATAACCAATTCGAGTTACTATGATGATAATGGCTTAACAGAAGCTTCAAGAGAAATTTTCACCAACAAACAAGCATTGGACCCTTTGTTCTGCTATGATTTCCAATCTGGTTATAACTTACCTATGAGTAATGATCACACAAGCCACAAACCATGTGATCAGAGTCAATTCGGATTTAATTCAAGCTATTGTTTCACTTCAATGCCGAGTCTAACAAATTCAGATCACGCAAATGTGTCCGTGACAGAGTTTTCGGACAACAATTCAGCTTCAAAATTCAGCTCATTGTTCATTAATGATCAAGGGAAAGAAAGCAATTCAAGTAATAGCTCAAATATGAGTACTATTTATCCATCTCAAATGAGAAGTACTATGATGGAAAATAACAATGCAGGGTTTTGTTGGGATGGATCAGAAAACAAATTGGACCCTATGTTTCAGTTCCAAGTAAATGCTATAAAATCTGAAGATTATGGAACTAGTTCATGGGAAGAAGGACAACTTCAAACTCATAATTCAATAGAAGATTTCAATAGCTATCCATTAACATCACTTTCAGAAGATTTAACAGAAGCAAATTTTGATGTCTTCCATCATATATGA
Protein sequence

>Msa1330390

MVDEFLSGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLTEAYLKEENKITETTAPPMQIPSHGSAFLITNSSYYDDNGLTEASREIFTNKQALDPLFCYDFQSGYNLPMSNDHTSHKPCDQSQFGFNSSYCFTSMPSLTNSDHANVSVTEFSDNNSASKFSSLFINDQGKESNSSNSSNMSTIYPSQMRSTMMENNNAGFCWDGSENKLDPMFQFQVNAIKSEDYGTSSWEEGQLQTHNSIEDFNSYPLTSLSEDLTEANFDVFHHI*