AlfalfaGEDB | Msa1331850

M. sativa cultivar zhongmu-4 / Msa1331850

KEGG: K07198
GO: GO:0000325 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009705 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0031090 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1331850	XP_003609346.2	97.309	446	12	0	1	446	1	446	0.0	907

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1331850	sp\|Q69Q47\|CIPKO_ORYSJ	73.243	441	118	0	5	445	12	452	0.0	697

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1331850	G7JE36	97.309	446	12	0	1	446	1	446	0.0	907

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0009640	Msa1331850	0.809369	1.957616e-50	-8.615850e-47
Msa0094710	Msa1331850	0.812590	3.926695e-51	-8.615850e-47
Msa0459860	Msa1331850	0.800134	1.661685e-48	-8.615850e-47
Msa1011250	Msa1331850	0.812692	3.730013e-51	-8.615850e-47
Msa1208990	Msa1331850	0.815918	7.227507e-52	-8.615850e-47
Msa1214840	Msa1331850	0.964811	8.460916e-124	-8.615850e-47
Msa1256060	Msa1331850	0.812011	5.254823e-51	-8.615850e-47
Msa1300810	Msa1331850	0.962331	9.462355e-121	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1331850	MtrunA17_Chr4g0063881	97.309	446	12	0	1	446	1	446	0.0	907
Msa1331850	MtrunA17_Chr5g0428031	67.667	433	139	1	4	435	2	434	0.0	634
Msa1331850	MtrunA17_Chr5g0441011	59.302	430	169	3	3	430	5	430	0.0	556
Msa1331850	MtrunA17_Chr8g0346081	56.941	425	179	1	5	429	11	431	0.0	527
Msa1331850	MtrunA17_Chr2g0304111	57.209	430	179	3	5	430	17	445	0.0	522
Msa1331850	MtrunA17_Chr8g0346071	57.176	425	177	2	5	429	11	430	0.0	521
Msa1331850	MtrunA17_Chr2g0284011	48.364	428	211	7	10	429	11	436	3.28e-141	411
Msa1331850	MtrunA17_Chr2g0302431	46.698	424	215	5	7	426	16	432	2.08e-140	410
Msa1331850	MtrunA17_Chr4g0013131	47.344	433	216	7	10	436	11	437	7.17e-140	409
Msa1331850	MtrunA17_Chr4g0069301	47.113	433	213	8	7	433	22	444	1.52e-138	404

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1331850	AT5G35410.1	72.870	446	121	0	1	446	1	446	697
Msa1331850	AT4G24400.1	64.932	442	150	2	4	445	2	438	620
Msa1331850	AT5G35410.2	73.387	372	99	0	1	372	1	372	590
Msa1331850	AT4G24400.2	66.667	387	128	1	4	390	2	387	559
Msa1331850	AT1G30270.1	58.486	436	176	3	8	439	28	462	550
Msa1331850	AT1G30270.2	58.486	436	176	3	8	439	28	462	548
Msa1331850	AT5G21326.1	57.241	435	180	3	3	435	5	435	546
Msa1331850	AT2G26980.3	56.818	440	184	3	2	439	5	440	545
Msa1331850	AT2G26980.4	56.818	440	184	3	2	439	15	450	545
Msa1331850	AT1G01140.1	56.542	428	179	3	5	429	13	436	525

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Find 178 sgRNAs with CRISPR-Local

Find 1256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGAAAAGTAGTCTCA+TGG	0.562723	8_4:+51560161	Msa1331850:three_prime_UTR
AAAGGCAGCTGGGGATACTC+TGG	0.496709	8_4:+51558785	Msa1331850:CDS
AAATTACTTCGGTGAAGGAA+AGG	0.575860	8_4:+51559958	Msa1331850:three_prime_UTR
AACAATAAATTGTACCAATT+CGG	0.386278	8_4:+51560079	Msa1331850:three_prime_UTR
AACCATTCTGTGTTTGAGAA+TGG	0.473451	8_4:-51551603	None:intergenic
AACCTTCTTCTTGATGCTTT+CGG	0.258005	8_4:+51553884	Msa1331850:CDS
AACTGAAAGTGAAGCTTCAG+AGG	0.550435	8_4:-51551194	None:intergenic
AAGAAAGTGAGGAGAAAGAT+TGG	0.376571	8_4:+51551470	Msa1331850:CDS
AAGAAATAAGGAAAGATCCA+TGG	0.560275	8_4:+51556308	Msa1331850:CDS
AAGATTCAACCCTTGTGACA+AGG	0.604019	8_4:-51557737	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCCTTGAAAAGAAAAGTAG+AGG	-	chr8_4:51551310-51551329	None:intergenic	30.0%
TTTCCTTTCCAAAACTATCA+AGG	+	chr8_4:51551644-51551663	Msa1331850:intron	30.0%
AGCAAAAGTGATTGAATACA+TGG	-	chr8_4:51551828-51551847	None:intergenic	30.0%
GTCATATCACTAGTAAATGT+GGG	-	chr8_4:51552184-51552203	None:intergenic	30.0%
GTGGTTATAACTTATAAGTG+GGG	+	chr8_4:51552208-51552227	Msa1331850:intron	30.0%
GCCTATACTAGATATGTTAT+TGG	+	chr8_4:51552530-51552549	Msa1331850:intron	30.0%
CCCAATAACATATCTAGTAT+AGG	-	chr8_4:51552534-51552553	None:intergenic	30.0%
TATAGTTGTTCCTATAAGTG+GGG	+	chr8_4:51552582-51552601	Msa1331850:intron	30.0%
CAAAAAGGTGGTAAGAATTA+TGG	-	chr8_4:51553235-51553254	None:intergenic	30.0%
AAAAGCTAATAGCAAAAAGG+TGG	-	chr8_4:51553247-51553266	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	51551099	51560604	51551099	ID=Msa1331850;Name=Msa1331850
chr8_4	mRNA	51551099	51560604	51551099	ID=Msa1331850-mRNA-1;Parent=Msa1331850;Name=Msa1331850-mRNA-1;_AED=0.12;_eAED=0.12;_QI=368\|1\|1\|1\|0.92\|1\|14\|802\|446
chr8_4	exon	51551099	51551631	51551099	ID=Msa1331850-mRNA-1:exon:15243;Parent=Msa1331850-mRNA-1
chr8_4	exon	51553295	51553357	51553295	ID=Msa1331850-mRNA-1:exon:15244;Parent=Msa1331850-mRNA-1
chr8_4	exon	51553445	51553516	51553445	ID=Msa1331850-mRNA-1:exon:15245;Parent=Msa1331850-mRNA-1
chr8_4	exon	51553664	51553771	51553664	ID=Msa1331850-mRNA-1:exon:15246;Parent=Msa1331850-mRNA-1
chr8_4	exon	51553878	51553952	51553878	ID=Msa1331850-mRNA-1:exon:15247;Parent=Msa1331850-mRNA-1
chr8_4	exon	51554131	51554184	51554131	ID=Msa1331850-mRNA-1:exon:15248;Parent=Msa1331850-mRNA-1
chr8_4	exon	51554824	51554949	51554824	ID=Msa1331850-mRNA-1:exon:15249;Parent=Msa1331850-mRNA-1
chr8_4	exon	51555624	51555713	51555624	ID=Msa1331850-mRNA-1:exon:15250;Parent=Msa1331850-mRNA-1
chr8_4	exon	51556295	51556417	51556295	ID=Msa1331850-mRNA-1:exon:15251;Parent=Msa1331850-mRNA-1
chr8_4	exon	51557664	51557783	51557664	ID=Msa1331850-mRNA-1:exon:15252;Parent=Msa1331850-mRNA-1
chr8_4	exon	51558031	51558147	51558031	ID=Msa1331850-mRNA-1:exon:15253;Parent=Msa1331850-mRNA-1
chr8_4	exon	51558578	51558634	51558578	ID=Msa1331850-mRNA-1:exon:15254;Parent=Msa1331850-mRNA-1
chr8_4	exon	51558744	51558818	51558744	ID=Msa1331850-mRNA-1:exon:15255;Parent=Msa1331850-mRNA-1
chr8_4	exon	51559707	51560604	51559707	ID=Msa1331850-mRNA-1:exon:15256;Parent=Msa1331850-mRNA-1
chr8_4	five_prime_UTR	51551099	51551466	51551099	ID=Msa1331850-mRNA-1:five_prime_utr;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51551467	51551631	51551467	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51553295	51553357	51553295	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51553445	51553516	51553445	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51553664	51553771	51553664	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51553878	51553952	51553878	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51554131	51554184	51554131	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51554824	51554949	51554824	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51555624	51555713	51555624	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51556295	51556417	51556295	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51557664	51557783	51557664	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51558031	51558147	51558031	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51558578	51558634	51558578	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51558744	51558818	51558744	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	CDS	51559707	51559802	51559707	ID=Msa1331850-mRNA-1:cds;Parent=Msa1331850-mRNA-1
chr8_4	three_prime_UTR	51559803	51560604	51559803	ID=Msa1331850-mRNA-1:three_prime_utr;Parent=Msa1331850-mRNA-1

Gene Sequence

>Msa1331850

ATGAAGAAAGTGAGGAGAAAGATTGGAAAGTATGAAGTTGGTAGAACAATTGGTGAAGGTACATTCGCTAAGGTCAAATTTGCAAAACACACCGAGACAGGGGAAAGTGTCGCGATTAAAGTCATGGCTAAAACTACCATTCTCAAACACAGAATGGTTGAACAGATCAAAAGAGAGATATCCATTATGAAGATTGTCAGGCACCCCAATATAGTCAGATTGCATGAGGTTTTGGCCAGTCAGACCAAGATCTACATAATTCTGGAGTTTGTAATGGGAGGGGAATTATATGATAAAATTGTTCAGCAGGTAAAGCTTTCTGAAAATGAATCTAGGCGCTACTTTCAACAACTTATAGACGCTGTTGCTCATTGTCATAAAAAGGGCGTGTACCATAGAGACTTGAAGCCTGAAAACCTTCTTCTTGATGCTTTCGGAAATTTGAAGGTTTCTGACTTTGGATTGAGTGCATTGACTAAGCAGGGTGATGAGCTTCTTCACACCACATGTGGGACCCCAAATTATGTTGCCCCTGAGGTGCTCAGCAATCAAGGTTATGATGGTGCAGCAGCTGATGTATGGTCATGTGGAATCATTCTATATGTTCTAATGGCTGGATATCTTCCTTTTGAGGAGGCAGACCTTCCGACGTTGTTCAGAAGGATCAGTGCTGCAGAATTTGTTTGCCCAGTCTGGTTTTCTGCTGGCGCAAAGACATTTATACATAAAATTTTGGACTCTAACCCTAAAACACGGGTAAAAATTGAAGAAATAAGGAAAGATCCATGGTTCCGGAAAAACTATTCTCCTGTCAAACTCAGGGAAGATGAGCAAGTGAATTTGGATGACGTTAAGGCTGTTTTTGATGATATTGAGGACCAATATGTTTCTGAACGGTCAGAAATTGCCAAGGGAGGTCCTTTGATAATGAATGCATTTGAGATGATAACCTTGTCACAAGGGTTGAATCTTTCACCACTATTTGACAGGCATCAGGATTATGTAAAACGACAGACTCGTTTTGTTTCACGTAAACCAGCAACAGTTATAATTTCATCTATTGAAGCTGTTGCAGAATCAATGGGTCTTAAGGTCCATTCTCGCAATTACAAGATGAGGATTGAAAGAGTTTCTTCAAATAAAGTTGGACAATTTGCAGTGGTCTTGGAGGTGTTTGAAGTCGCACCATCCCTTTTCATGGTGGATGTTCGAAAGGCAGCTGGGGATACTCTGGAGTATCACAAGTTTTACAAGAACCTCTGTGCGAAACTAGAGAGCATTATTTGGAGACCGGCAGAGACTAGCCCAGATTCTGGTTTGCTTCGACAAATGACATTCTGA

Protein sequence

>Msa1331850

MKKVRRKIGKYEVGRTIGEGTFAKVKFAKHTETGESVAIKVMAKTTILKHRMVEQIKREISIMKIVRHPNIVRLHEVLASQTKIYIILEFVMGGELYDKIVQQVKLSENESRRYFQQLIDAVAHCHKKGVYHRDLKPENLLLDAFGNLKVSDFGLSALTKQGDELLHTTCGTPNYVAPEVLSNQGYDGAAADVWSCGIILYVLMAGYLPFEEADLPTLFRRISAAEFVCPVWFSAGAKTFIHKILDSNPKTRVKIEEIRKDPWFRKNYSPVKLREDEQVNLDDVKAVFDDIEDQYVSERSEIAKGGPLIMNAFEMITLSQGLNLSPLFDRHQDYVKRQTRFVSRKPATVIISSIEAVAESMGLKVHSRNYKMRIERVSSNKVGQFAVVLEVFEVAPSLFMVDVRKAAGDTLEYHKFYKNLCAKLESIIWRPAETSPDSGLLRQMTF*