AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331880 MtrunA17_Chr4g0063841 83.092 621 97 3 13 625 13 633 0.0 963
Msa1331880 MtrunA17_Chr1g0149351 60.465 602 232 2 30 625 42 643 0.0 716
Msa1331880 MtrunA17_Chr4g0063861 93.846 390 24 0 236 625 1 390 0.0 705
Msa1331880 MtrunA17_Chr4g0063861 22.439 410 260 8 159 539 2 382 7.63e-12 67.4
Msa1331880 MtrunA17_Chr3g0137771 54.849 598 266 3 30 624 44 640 0.0 621
Msa1331880 MtrunA17_Chr4g0063851 90.123 162 15 1 3 163 9 170 6.12e-96 293
Msa1331880 MtrunA17_Chr2g0286991 26.702 573 359 16 56 582 11 568 6.38e-36 142
Msa1331880 MtrunA17_Chr2g0286991 27.133 457 291 12 159 611 153 571 5.94e-34 137
Msa1331880 MtrunA17_Chr2g0286991 29.095 409 278 11 211 617 127 525 9.07e-29 121
Msa1331880 MtrunA17_Chr2g0286991 27.901 362 247 9 126 486 230 578 2.46e-24 107
Msa1331880 MtrunA17_Chr2g0286991 28.829 333 226 7 135 466 262 584 2.88e-23 104
Msa1331880 MtrunA17_Chr7g0272131 29.363 487 282 12 146 620 184 620 1.32e-31 130
Msa1331880 MtrunA17_Chr7g0272131 29.091 165 116 1 155 319 474 637 7.59e-12 68.6
Msa1331880 MtrunA17_Chr1g0212071 25.977 435 277 12 54 480 18 415 7.15e-28 116
Msa1331880 MtrunA17_Chr1g0212071 27.273 286 202 6 324 606 103 385 2.93e-17 84.3
Msa1331880 MtrunA17_Chr1g0212071 31.492 181 121 3 435 614 108 286 2.95e-14 75.1
Msa1331880 MtrunA17_Chr4g0004901 27.617 449 300 15 121 563 179 608 2.78e-22 101
Msa1331880 MtrunA17_Chr4g0004901 26.339 448 288 15 159 577 135 569 2.26e-19 92.4
Msa1331880 MtrunA17_Chr8g0347711 26.870 361 233 9 52 395 11 357 1.00e-18 88.6
Msa1331880 MtrunA17_Chr3g0125671 27.358 318 174 10 135 424 60 348 1.76e-17 84.7
Msa1331880 MtrunA17_Chr1g0159531 27.706 231 129 4 181 399 99 303 3.03e-17 83.6
Msa1331880 MtrunA17_Chr1g0159531 33.333 150 93 3 126 274 128 271 1.89e-13 72.4
Msa1331880 MtrunA17_Chr1g0159531 26.877 253 157 4 156 380 100 352 7.88e-13 70.5
Msa1331880 MtrunA17_Chr1g0176031 29.218 243 162 5 155 391 88 326 3.88e-16 80.5
Msa1331880 MtrunA17_Chr1g0176031 21.839 348 206 9 172 512 52 340 1.25e-13 72.8
Msa1331880 MtrunA17_Chr1g0150971 24.939 409 244 15 171 564 339 699 1.60e-14 77.4
Msa1331880 MtrunA17_Chr4g0018891 25.000 328 211 9 211 537 189 482 5.61e-13 71.6
Msa1331880 MtrunA17_Chr4g0018891 24.324 407 270 13 55 443 81 467 3.41e-11 65.9
Msa1331880 MtrunA17_Chr1g0150991 24.878 410 234 18 162 564 147 489 8.88e-13 71.2
Msa1331880 MtrunA17_Chr4g0070541 26.357 258 182 7 328 582 397 649 1.12e-12 71.2
Msa1331880 MtrunA17_Chr2g0300611 24.324 259 164 6 352 582 400 654 7.68e-12 68.6
Msa1331880 MtrunA17_Chr4g0008501 23.059 438 280 15 150 558 143 552 1.01e-11 67.8
Msa1331880 MtrunA17_Chr4g0002671 23.810 420 276 15 161 555 130 530 1.25e-11 67.4
Msa1331880 MtrunA17_Chr4g0070521 24.627 268 184 7 328 582 28 290 1.88e-11 65.9
Msa1331880 MtrunA17_Chr5g0432971 21.429 406 291 11 163 558 140 527 4.16e-11 65.9
Msa1331880 MtrunA17_Chr4g0053361 23.632 402 239 13 207 602 116 455 7.36e-11 65.1
Msa1331880 MtrunA17_Chr5g0446541 24.862 362 221 12 160 507 247 571 9.37e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331880 AT2G25490.1 53.289 608 268 7 21 625 34 628 0.0 619
Msa1331880 AT5G25350.1 53.068 603 268 6 26 624 31 622 0.0 592
Msa1331880 AT4G15475.1 28.125 576 347 18 56 582 11 568 1.07e-40 157
Msa1331880 AT4G15475.1 27.976 336 225 7 135 466 262 584 1.59e-26 115
Msa1331880 AT4G15475.1 26.096 456 277 13 208 611 124 571 8.28e-26 112
Msa1331880 AT4G15475.1 29.885 174 114 4 135 308 443 608 3.40e-13 73.2
Msa1331880 AT5G27920.1 25.856 526 328 15 143 616 90 605 2.14e-28 120
Msa1331880 AT5G27920.1 27.215 316 186 9 185 500 338 609 6.01e-17 85.1
Msa1331880 AT5G23340.1 25.754 431 282 10 54 480 8 404 2.82e-26 112
Msa1331880 AT5G23340.1 29.231 260 179 5 324 581 93 349 7.50e-19 89.7
Msa1331880 AT5G23340.1 31.522 184 123 3 435 617 98 279 2.60e-17 85.1
Msa1331880 AT5G23340.1 24.161 298 220 5 253 548 75 368 1.14e-16 83.2
Msa1331880 AT5G01720.1 26.142 394 226 8 158 528 238 589 1.41e-23 106
Msa1331880 AT5G01720.1 26.423 492 281 13 159 576 85 569 8.90e-21 97.4
Msa1331880 AT5G01720.1 26.174 298 189 6 159 431 316 607 4.70e-13 72.8
Msa1331880 AT1G77000.2 25.899 278 166 5 184 456 103 345 1.51e-16 82.0
Msa1331880 AT1G77000.2 27.119 236 130 5 123 357 126 320 1.27e-13 73.2
Msa1331880 AT1G77000.1 25.899 278 166 5 184 456 103 345 1.51e-16 82.0
Msa1331880 AT1G77000.1 27.119 236 130 5 123 357 126 320 1.27e-13 73.2
Msa1331880 AT3G58530.1 22.701 348 204 8 172 512 53 342 1.98e-16 81.6
Msa1331880 AT3G58530.1 27.523 218 151 6 137 352 102 314 3.64e-14 74.7
Msa1331880 AT1G21410.2 26.033 242 144 5 187 428 106 312 5.48e-16 80.5
Msa1331880 AT1G21410.2 25.417 240 113 5 159 369 130 332 1.89e-12 69.7
Msa1331880 AT1G21410.1 26.033 242 144 5 187 428 106 312 5.48e-16 80.5
Msa1331880 AT1G21410.1 25.417 240 113 5 159 369 130 332 1.89e-12 69.7
Msa1331880 AT3G07550.1 23.656 372 256 7 44 399 6 365 8.12e-12 67.8
Msa1331880 AT3G07550.2 23.656 372 256 7 44 399 6 365 8.12e-12 67.8
Msa1331880 AT4G30640.1 29.048 210 130 5 41 248 8 200 8.28e-12 67.0
Msa1331880 AT4G33210.1 23.737 396 240 14 171 552 348 695 2.19e-11 67.8
Msa1331880 AT1G47056.1 31.609 174 104 5 116 285 260 422 5.93e-11 65.9
Msa1331880 AT1G77000.3 28.221 163 91 2 184 346 103 239 8.12e-11 63.5
Msa1331880 AT1G77000.4 28.221 163 91 2 184 346 103 239 8.12e-11 63.5

Find 174 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACATGATTCAATGTTTA+AGG 0.105062 8_4:+51575203 None:intergenic
TCAAGTTGCAGCAACCTTTA+AGG 0.112650 8_4:+51574404 None:intergenic
AGTTTCTCATGGAGAATTTA+TGG 0.175014 8_4:-51574051 Msa1331880:CDS
AGCTGGCCTTCTCCCTCTTT+TGG 0.181327 8_4:-51574458 Msa1331880:CDS
AACACCTCAATTCTGAATAA+AGG 0.222394 8_4:-51573592 Msa1331880:three_prime_UTR
GTGCCTTTCCTTATGAAATT+AGG 0.243973 8_4:-51574133 Msa1331880:CDS
GGTGATGTTGAACTGCATTC+TGG 0.245805 8_4:-51575879 Msa1331880:CDS
CGCGATAGAACTGCTGAATA+AGG 0.252744 8_4:-51574006 Msa1331880:three_prime_UTR
GATATTTCTCTGGCTGTTAT+TGG 0.275670 8_4:-51575018 Msa1331880:CDS
ATGTTTAAGGTTGTCAAGTT+AGG 0.283107 8_4:+51575216 None:intergenic
GGCACATCTGCTTCAGGTTT+GGG 0.286321 8_4:+51574824 None:intergenic
CATCTATGCTTTCACCTTGC+AGG 0.318193 8_4:-51574603 Msa1331880:CDS
CTTGTCAAGGTGAACCTTAA+AGG 0.326316 8_4:-51574418 Msa1331880:CDS
CGCTGTGTGATTTGTGGACT+CGG 0.326803 8_4:-51573882 Msa1331880:three_prime_UTR
AGGCACATCTGCTTCAGGTT+TGG 0.328088 8_4:+51574823 None:intergenic
TTTATGGAGATGTGATATTC+TGG 0.332414 8_4:-51574035 Msa1331880:CDS
GAATATTACTGATGCAAGTT+TGG 0.340768 8_4:-51574308 Msa1331880:CDS
AACTTGCATCAGTAATATTC+TGG 0.341063 8_4:+51574311 None:intergenic
CTCTCTATGTCTGACTGTTC+TGG 0.342287 8_4:-51574172 Msa1331880:CDS
ATTGAATCATGTTCTATGAT+TGG 0.343781 8_4:-51575195 Msa1331880:CDS
ACTTACACTTGTGAAGTGTT+TGG 0.349484 8_4:-51574650 Msa1331880:CDS
ATGTAAACGAAAGAGGGTTT+TGG 0.349720 8_4:-51574948 Msa1331880:CDS
TGTCCTCTTGTTGGAGATCC+TGG 0.350470 8_4:-51575108 Msa1331880:CDS
CTTACACTTGTGAAGTGTTT+GGG 0.352014 8_4:-51574649 Msa1331880:CDS
ATTCGAAACTGCCCTGGTTT+CGG 0.356036 8_4:-51574562 Msa1331880:CDS
ATTAAATATTGCAATGCAAT+TGG 0.368793 8_4:-51574088 Msa1331880:CDS
AAAATTCAGTATGCTTATCT+TGG 0.372964 8_4:-51573930 Msa1331880:three_prime_UTR
ATCATGGGTTGTCCTCTTGT+TGG 0.374274 8_4:-51575117 Msa1331880:CDS
GTTACATTCAATCTCTATCA+TGG 0.375507 8_4:-51575133 Msa1331880:CDS
CTCTAGATCGCACATTGCTT+GGG 0.376603 8_4:-51573715 Msa1331880:three_prime_UTR
CGGAACAAACAAAAGCTCTT+TGG 0.377035 8_4:+51573852 None:intergenic
TTGTTTATTACAATCCCTTT+TGG 0.383011 8_4:-51573787 Msa1331880:three_prime_UTR
GGCTTGCTGCTATTGCTGTT+GGG 0.383869 8_4:-51575494 Msa1331880:CDS
ACACCTCAATTCTGAATAAA+GGG 0.384095 8_4:-51573591 Msa1331880:three_prime_UTR
ATCAGTGTCTCATTTAGCTT+TGG 0.387859 8_4:-51575786 Msa1331880:CDS
TACGAAGGCACATCTGCTTC+AGG 0.388908 8_4:+51574818 None:intergenic
GCTGCTATTGCTGTTGGGAC+TGG 0.389778 8_4:-51575489 Msa1331880:CDS
GTGATGTTGAACTGCATTCT+GGG 0.392276 8_4:-51575878 Msa1331880:CDS
TGGGTCATGGGGTTTGGTGA+AGG 0.394749 8_4:-51574928 Msa1331880:CDS
GAATATTACCGATATTTCTC+TGG 0.398946 8_4:-51575028 Msa1331880:CDS
TGTGTCTTCCATTGGTGATA+AGG 0.401503 8_4:-51575343 Msa1331880:CDS
TATTGCAATCAAACCCTTGT+TGG 0.403057 8_4:+51575251 None:intergenic
ACTGGTTGCCGTGGTGGACT+TGG 0.405676 8_4:-51575471 Msa1331880:CDS
ACTCTAGATCGCACATTGCT+TGG 0.407050 8_4:-51573716 Msa1331880:three_prime_UTR
CTCGAGAGATATTGCAGATC+TGG 0.411632 8_4:+51574756 None:intergenic
TCAGCAGTTCTATCGCGATT+AGG 0.412363 8_4:+51574012 None:intergenic
GAAATTAGGCCAGGCATTGT+TGG 0.413637 8_4:-51574119 Msa1331880:CDS
TCCCTTCCAAACGCCTTGTA+AGG 0.414436 8_4:+51575535 None:intergenic
AGGCTTGCTGCTATTGCTGT+TGG 0.416928 8_4:-51575495 Msa1331880:CDS
GTGTCTTCCATTGGTGATAA+GGG 0.417017 8_4:-51575342 Msa1331880:CDS
GCCTAGCATCGAGATCCTTT+CGG 0.419585 8_4:-51575736 Msa1331880:CDS
TGGAAAAGTGATATCGAATC+TGG 0.422327 8_4:-51574989 Msa1331880:CDS
TGGCTACCTTACAAGGCGTT+TGG 0.422778 8_4:-51575541 Msa1331880:CDS
CTCGTGGTTGCCCTTCTCTC+AGG 0.423379 8_4:-51575383 Msa1331880:CDS
AAGCTAGCACTGCCGAAACC+AGG 0.424270 8_4:+51574550 None:intergenic
GAGCTTCTCTCTTTGCCACT+TGG 0.430900 8_4:+51575681 None:intergenic
TGGTGAAGGTCTACAGAAAC+TGG 0.431128 8_4:-51574914 Msa1331880:CDS
AGTGCTAGCTTGGCTGTGAT+CGG 0.433490 8_4:-51574538 Msa1331880:CDS
TGTTTAAGGTTGTCAAGTTA+GGG 0.434609 8_4:+51575217 None:intergenic
AAATTAGGCCAGGCATTGTT+GGG 0.435760 8_4:-51574118 Msa1331880:CDS
CTCATGAAACTATAGCCAAA+AGG 0.441101 8_4:+51573772 None:intergenic
CGTGTGTAGTTTGTTATCAT+CGG 0.442981 8_4:-51575085 Msa1331880:CDS
TGGTTTCGGCAGTGCTAGCT+TGG 0.444665 8_4:-51574548 Msa1331880:CDS
TAACCCTTTATTCAGAATTG+AGG 0.449621 8_4:+51573588 None:intergenic
AGTCAAGTTGTTTCCTCTGA+TGG 0.450037 8_4:+51575440 None:intergenic
ATGTTCTATGATTGGAAATG+AGG 0.452791 8_4:-51575187 Msa1331880:CDS
AATAACAGCCAGAGAAATAT+CGG 0.456935 8_4:+51575020 None:intergenic
TCTGAGTTGGCCAGGCTACA+TGG 0.461491 8_4:-51574367 Msa1331880:CDS
CGTTGTATCCGACGATGGAT+TGG 0.464778 8_4:-51574788 Msa1331880:CDS
AGTGGCAAAGAGAGAAGCTC+AGG 0.464804 8_4:-51575678 Msa1331880:CDS
GTTCTATGGATACCGGGAGT+AGG 0.473593 8_4:-51575854 Msa1331880:CDS
TGGATTCGCTGTGTGATTTG+TGG 0.477485 8_4:-51573888 Msa1331880:three_prime_UTR
AGAATTCTGTTACTGAGTCT+TGG 0.481999 8_4:-51573751 Msa1331880:three_prime_UTR
GTGCTAGCTTGGCTGTGATC+GGG 0.483604 8_4:-51574537 Msa1331880:CDS
CAGGTGCCTGTGTATCAAAA+AGG 0.484862 8_4:-51575659 Msa1331880:CDS
AAGTGTGCAATCACCGATGC+AGG 0.485592 8_4:-51574238 Msa1331880:CDS
ATGCCTGGCCTAATTTCATA+AGG 0.487377 8_4:+51574125 None:intergenic
TCATGAAACTATAGCCAAAA+GGG 0.487424 8_4:+51573773 None:intergenic
ACATAGTTTCTGAGTTGGCC+AGG 0.488713 8_4:-51574375 Msa1331880:CDS
GGCATCGAAAATCCCACATT+GGG 0.492253 8_4:+51574702 None:intergenic
GAGAGTTCCACCATGTAGCC+TGG 0.492311 8_4:+51574357 None:intergenic
ATGATCAGCACGAGCGAGAA+CGG 0.494819 8_4:+51574210 None:intergenic
GTTATTAATAATGAAGCAGC+AGG 0.496762 8_4:-51573957 Msa1331880:three_prime_UTR
TGTTGGTGATCGACGAAGAA+TGG 0.500627 8_4:+51575268 None:intergenic
ATAGAGATTGAATGTAACTT+AGG 0.501147 8_4:+51575138 None:intergenic
TATTCAATCCCAACAATGCC+TGG 0.501998 8_4:+51574110 None:intergenic
CATCGGCTTCCGACTTGTCA+AGG 0.503121 8_4:-51575068 Msa1331880:CDS
CTGGCTGTTATTGGCCATTG+TGG 0.505982 8_4:-51575009 Msa1331880:CDS
CTTCGAAATGTAAACGAAAG+AGG 0.507166 8_4:-51574955 Msa1331880:CDS
CAACGCAATTGAGTTTCTCA+TGG 0.508699 8_4:-51574062 Msa1331880:CDS
TTCTATGGATACCGGGAGTA+GGG 0.510872 8_4:-51575853 Msa1331880:CDS
GCTTCACAATTCTCCAAAAG+AGG 0.511161 8_4:+51574445 None:intergenic
TTTCCTTATGAAATTAGGCC+AGG 0.512406 8_4:-51574128 Msa1331880:CDS
GGAGGAAAGCCACTGATGTA+AGG 0.514553 8_4:-51575515 Msa1331880:CDS
AAGGTGATGGCTACCTTACA+AGG 0.519297 8_4:-51575548 Msa1331880:CDS
TGATAAGAGCATCGAAGCCA+TGG 0.520771 8_4:-51574857 Msa1331880:CDS
CTTTGCCGCATAACAGAAGC+TGG 0.522136 8_4:-51574475 Msa1331880:CDS
CTGTGGAATGTGTCTTCCAT+TGG 0.524514 8_4:-51575351 Msa1331880:CDS
CTTATCAGTTACCCCTTCGC+AGG 0.525291 8_4:+51574873 None:intergenic
TACCTTACAAGGCGTTTGGA+AGG 0.525492 8_4:-51575537 Msa1331880:CDS
ATCTCTCGAGACCTTGCAGT+TGG 0.531656 8_4:-51574743 Msa1331880:CDS
AGCATCGAAGCCATGGGTAG+AGG 0.532085 8_4:-51574850 Msa1331880:CDS
CTAAATGAGACACTGATTCG+AGG 0.533971 8_4:+51575792 None:intergenic
GTAACCATTCGAAACTGCCC+TGG 0.535257 8_4:-51574568 Msa1331880:CDS
TTACATTCAATCTCTATCAT+GGG 0.535296 8_4:-51575132 Msa1331880:CDS
CTTCAGCATGTTGATCTGAC+TGG 0.536194 8_4:-51574499 Msa1331880:CDS
TGCAAAAGGATGTCATATGT+TGG 0.540414 8_4:-51575307 Msa1331880:CDS
TACCCCTTCGCAGGAAGTAA+TGG 0.541323 8_4:+51574882 None:intergenic
TGTTCTATGATTGGAAATGA+GGG 0.541807 8_4:-51575186 Msa1331880:CDS
GTTGGGACTGGTTGCCGTGG+TGG 0.544249 8_4:-51575477 Msa1331880:CDS
GTGAAAGTGACCTGAGAGAA+GGG 0.545938 8_4:+51575373 None:intergenic
TTCGAAATGTAAACGAAAGA+GGG 0.555173 8_4:-51574954 Msa1331880:CDS
AGACGTCTAGATCATTCAGC+AGG 0.560524 8_4:+51574263 None:intergenic
AGCTAGCACTGCCGAAACCA+GGG 0.560620 8_4:+51574551 None:intergenic
CTCGAAATACTAAATCTCGA+TGG 0.562470 8_4:-51574337 Msa1331880:CDS
ACCTTACAAGGCGTTTGGAA+GGG 0.565254 8_4:-51575536 Msa1331880:CDS
AGACAACATAGTTTCTGAGT+TGG 0.569550 8_4:-51574380 Msa1331880:CDS
CTCTCAGGTCACTTTCACTG+TGG 0.570795 8_4:-51575368 Msa1331880:CDS
GAAACCAGGGCAGTTTCGAA+TGG 0.572963 8_4:+51574564 None:intergenic
TTACCATTACTTCCTGCGAA+GGG 0.574629 8_4:-51574885 Msa1331880:CDS
GGTTTGATTGCAATAGCTGA+AGG 0.577016 8_4:-51575243 Msa1331880:CDS
GGGCATCGAAAATCCCACAT+TGG 0.583229 8_4:+51574701 None:intergenic
AGCAGCAAGCCTTACATCAG+TGG 0.584954 8_4:+51575506 None:intergenic
TTCTTCGTCGATCACCAACA+AGG 0.587327 8_4:-51575265 Msa1331880:CDS
TGGCCTAATTTCATAAGGAA+AGG 0.589289 8_4:+51574130 None:intergenic
GTTTGGGAAACCTCTACCCA+TGG 0.589944 8_4:+51574840 None:intergenic
CTTACCATTACTTCCTGCGA+AGG 0.591692 8_4:-51574886 Msa1331880:CDS
AGTGAAAGTGACCTGAGAGA+AGG 0.591904 8_4:+51575372 None:intergenic
TGATGTTGAACTGCATTCTG+GGG 0.592130 8_4:-51575877 Msa1331880:CDS
ACACAGACCCTTATCACCAA+TGG 0.592165 8_4:+51575335 None:intergenic
TTACAAGGCGTTTGGAAGGG+AGG 0.593323 8_4:-51575533 Msa1331880:CDS
AAGCTTTACCCTTGACAAGT+CGG 0.595628 8_4:+51575059 None:intergenic
CTTCACAATTCTCCAAAAGA+GGG 0.598079 8_4:+51574446 None:intergenic
CAAAGAGACATTCATCCGAA+AGG 0.601315 8_4:+51575721 None:intergenic
GATGAAGATGCTGAAGGTGA+TGG 0.605262 8_4:-51575561 Msa1331880:CDS
AAGCAATGTGCGATCTAGAG+TGG 0.606144 8_4:+51573718 None:intergenic
TGTAACAGATTCACCCAATG+TGG 0.606794 8_4:-51574715 Msa1331880:CDS
GATAACAAACTACACACGCC+AGG 0.610237 8_4:+51575090 None:intergenic
TGAAGCAGATGTGCCTTCGT+AGG 0.612627 8_4:-51574816 Msa1331880:CDS
GATAAGAGCATCGAAGCCAT+GGG 0.616443 8_4:-51574856 Msa1331880:CDS
AGATCAACATGCTGAAGTTG+CGG 0.616727 8_4:+51574505 None:intergenic
ATCGGCTTCCGACTTGTCAA+GGG 0.617443 8_4:-51575067 Msa1331880:CDS
TACCATTACTTCCTGCGAAG+GGG 0.619379 8_4:-51574884 Msa1331880:CDS
AATAGTGTACACCCTACTCC+CGG 0.620803 8_4:+51575842 None:intergenic
TCTTCGTCGATCACCAACAA+GGG 0.621934 8_4:-51575264 Msa1331880:CDS
AATTCTCCAAAAGAGGGAGA+AGG 0.622832 8_4:+51574452 None:intergenic
TGTTGCGTTGTATCCGACGA+TGG 0.623258 8_4:-51574793 Msa1331880:CDS
GGTCTCTCAGCAGTTGCTCG+TGG 0.624322 8_4:-51575399 Msa1331880:CDS
GGTCTGTGTGAGATTGCAAA+AGG 0.625248 8_4:-51575321 Msa1331880:CDS
ATATCGAATCTGGCTCTAAG+TGG 0.626087 8_4:-51574979 Msa1331880:CDS
CGTCTAGATCATTCAGCAGG+AGG 0.627261 8_4:+51574266 None:intergenic
GAAGGCCAGCTTCTGTTATG+CGG 0.627520 8_4:+51574470 None:intergenic
AAATGCTACCAATCCATCGT+CGG 0.633075 8_4:+51574780 None:intergenic
GTTACACTCTTCCAACTGCA+AGG 0.638689 8_4:+51574732 None:intergenic
ATTAATAATGAAGCAGCAGG+TGG 0.640608 8_4:-51573954 Msa1331880:three_prime_UTR
AGTTTCGAATGGTTACAGAT+CGG 0.640647 8_4:+51574575 None:intergenic
ACGCCAGGATCTCCAACAAG+AGG 0.641347 8_4:+51575105 None:intergenic
GCTGTTGGGACTGGTTGCCG+TGG 0.645340 8_4:-51575480 Msa1331880:CDS
GAGAACGGCTATGCCTGCAT+CGG 0.646912 8_4:+51574225 None:intergenic
CTTGGAAAGCTATCCATCAG+AGG 0.654070 8_4:-51575453 Msa1331880:CDS
TTGTGAAGCTGGACTTGTCA+AGG 0.655559 8_4:-51574431 Msa1331880:CDS
GATGTTGAACTGCATTCTGG+GGG 0.655981 8_4:-51575876 Msa1331880:CDS
GTAACAGATTCACCCAATGT+GGG 0.667862 8_4:-51574714 Msa1331880:CDS
GAGAGTGATGAAGATGCTGA+AGG 0.668726 8_4:-51575567 Msa1331880:CDS
GAGCAACTGCTGAGAGACCG+CGG 0.671435 8_4:+51575403 None:intergenic
ATACAACGCAACACCTACGA+AGG 0.675706 8_4:+51574803 None:intergenic
GCTGATGCGACAATCAAGTG+TGG 0.694503 8_4:-51573908 Msa1331880:three_prime_UTR
AGAGGAAACAACTTGACTCG+AGG 0.696364 8_4:-51575435 Msa1331880:CDS
ATATTCAGACGACTTCCAAG+TGG 0.701548 8_4:-51575696 Msa1331880:CDS
GAGTTGGCCAGGCTACATGG+TGG 0.718936 8_4:-51574364 Msa1331880:CDS
ACTCGAGGTGTTACAGACCG+CGG 0.719268 8_4:-51575420 Msa1331880:CDS
ACAGATCGGAGATACCTGCA+AGG 0.724418 8_4:+51574589 None:intergenic
TGAAGGTCTACAGAAACTGG+TGG 0.733420 8_4:-51574911 Msa1331880:CDS
ATAGCTTTCCAAGTCCACCA+CGG 0.765528 8_4:+51575463 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTGGAAAATATATATT+AGG + chr8_4:51574655-51574674 None:intergenic 15.0%
!!! ATTTTTTGTTTTTGAAAACT+CGG - chr8_4:51575411-51575430 Msa1331880:CDS 15.0%
!! ATGATATGATAATAATAACT+TGG - chr8_4:51575626-51575645 Msa1331880:CDS 15.0%
!!! GATTTCTTTTTATAGAAGAA+TGG + chr8_4:51573781-51573800 None:intergenic 20.0%
!! TCTTCTATAAAAAGAAATCA+TGG - chr8_4:51573782-51573801 Msa1331880:three_prime_UTR 20.0%
!! TATCAAATCTACAATTACAA+TGG + chr8_4:51574249-51574268 None:intergenic 20.0%
!!! TGGTTTTATTTATTGGAAAT+TGG + chr8_4:51574670-51574689 None:intergenic 20.0%
!!! AAGAAAGTGGTTTTATTTAT+TGG + chr8_4:51574677-51574696 None:intergenic 20.0%
!! TTTAAATCAGTTTCTGTATT+GGG + chr8_4:51574748-51574767 None:intergenic 20.0%
!!! TTTCTTTGTTATTCTTACTA+AGG + chr8_4:51575234-51575253 None:intergenic 20.0%
!! AAGAATAACAAAGAAAAGAT+TGG - chr8_4:51575238-51575257 Msa1331880:CDS 20.0%
!! TACTAATTGTGATTTCTTTA+TGG - chr8_4:51575267-51575286 Msa1331880:CDS 20.0%
!!! AGAACATTTTTCATTTTCTT+TGG - chr8_4:51575313-51575332 Msa1331880:CDS 20.0%
!!! TAGATAGTGAATTTTGTTTA+AGG - chr8_4:51575592-51575611 Msa1331880:CDS 20.0%
!!! AGATAGTGAATTTTGTTTAA+GGG - chr8_4:51575593-51575612 Msa1331880:CDS 20.0%
!! ATTAAATATTGCAATGCAAT+TGG - chr8_4:51577491-51577510 Msa1331880:intron 20.0%
!! TGAAAATGTTTGCAAAAATA+GGG + chr8_4:51577760-51577779 None:intergenic 20.0%
!! TTGAAAATGTTTGCAAAAAT+AGG + chr8_4:51577761-51577780 None:intergenic 20.0%
! AAATCTGTCTGTTGAAAAAA+AGG - chr8_4:51573887-51573906 Msa1331880:three_prime_UTR 25.0%
!! ATTCTTTTCTTTTCTCACAT+TGG - chr8_4:51573945-51573964 Msa1331880:three_prime_UTR 25.0%
!! AAAATGTGTTACTCATGATT+AGG - chr8_4:51574128-51574147 Msa1331880:CDS 25.0%
!! TCATGATTAGGACTATATTT+TGG - chr8_4:51574140-51574159 Msa1331880:CDS 25.0%
! TGTAATTGTAGATTTGATAG+TGG - chr8_4:51574250-51574269 Msa1331880:CDS 25.0%
! TATTTGTACTTGATATTGAC+CGG + chr8_4:51574337-51574356 None:intergenic 25.0%
! GTCAATATCAAGTACAAATA+TGG - chr8_4:51574337-51574356 Msa1331880:CDS 25.0%
! AAGGAAAAAAAACACAGAAT+AGG + chr8_4:51574619-51574638 None:intergenic 25.0%
!!! TATATATTAGGTGTCATTCA+TGG + chr8_4:51574643-51574662 None:intergenic 25.0%
! TTAAATCAGTTTCTGTATTG+GGG + chr8_4:51574747-51574766 None:intergenic 25.0%
! CTTTAAATCAGTTTCTGTAT+TGG + chr8_4:51574749-51574768 None:intergenic 25.0%
! AGAAGAAAAAACGCAAAAAA+AGG + chr8_4:51574778-51574797 None:intergenic 25.0%
!!! TTTTTGCGTTTTTTCTTCTT+AGG - chr8_4:51574779-51574798 Msa1331880:CDS 25.0%
!!! TTTTGCGTTTTTTCTTCTTA+GGG - chr8_4:51574780-51574799 Msa1331880:CDS 25.0%
! TAAAAGCTGAAAATCACAAA+GGG + chr8_4:51574882-51574901 None:intergenic 25.0%
! CATTAAAGGCAAATGAAAAA+GGG + chr8_4:51574974-51574993 None:intergenic 25.0%
! ACATTAAAGGCAAATGAAAA+AGG + chr8_4:51574975-51574994 None:intergenic 25.0%
!!! TTCTTAAGTTTTCAAGTTTG+TGG - chr8_4:51575074-51575093 Msa1331880:CDS 25.0%
!!! TTGTGGTTTTAATTGATCAT+AGG - chr8_4:51575091-51575110 Msa1331880:CDS 25.0%
!!! TTTTTTCTTCTCTCTTTCTA+TGG - chr8_4:51575143-51575162 Msa1331880:CDS 25.0%
!! ACATTTTTCATTTTCTTTGG+TGG - chr8_4:51575316-51575335 Msa1331880:CDS 25.0%
!!! GATAGTGAATTTTGTTTAAG+GGG - chr8_4:51575594-51575613 Msa1331880:CDS 25.0%
! AGAACATGATTCAATGTTTA+AGG + chr8_4:51576379-51576398 None:intergenic 25.0%
! ATTGAATCATGTTCTATGAT+TGG - chr8_4:51576384-51576403 Msa1331880:intron 25.0%
! ATAGAGATTGAATGTAACTT+AGG + chr8_4:51576444-51576463 None:intergenic 25.0%
! TTACATTCAATCTCTATCAT+GGG - chr8_4:51576447-51576466 Msa1331880:intron 25.0%
! AAAATTCAGTATGCTTATCT+TGG - chr8_4:51577649-51577668 Msa1331880:intron 25.0%
!! TTGTTTATTACAATCCCTTT+TGG - chr8_4:51577792-51577811 Msa1331880:intron 25.0%
TTTATAGAAGAATGGTCTAG+TGG + chr8_4:51573773-51573792 None:intergenic 30.0%
!! AATTGTAGATTTGATAGTGG+TGG - chr8_4:51574253-51574272 Msa1331880:CDS 30.0%
TGAATACCAATGTACAATAG+AGG - chr8_4:51574287-51574306 Msa1331880:CDS 30.0%
ATATGGTTAACCACTTTGTA+AGG - chr8_4:51574354-51574373 Msa1331880:CDS 30.0%
AACGGCTCTATTTCATAAAA+AGG - chr8_4:51574394-51574413 Msa1331880:CDS 30.0%
CAGAAAAAGAAATTAGAGAG+TGG - chr8_4:51574481-51574500 Msa1331880:CDS 30.0%
TAAATCAGTTTCTGTATTGG+GGG + chr8_4:51574746-51574765 None:intergenic 30.0%
GAGGTATATAACAGAGTAAA+AGG + chr8_4:51574831-51574850 None:intergenic 30.0%
GTAAAAGCTGAAAATCACAA+AGG + chr8_4:51574883-51574902 None:intergenic 30.0%
! TGTGATTTTCAGCTTTTACT+TGG - chr8_4:51574884-51574903 Msa1331880:CDS 30.0%
AAGCAAGAGTGAAACATTAA+AGG + chr8_4:51574988-51575007 None:intergenic 30.0%
!!! TTTTTTCTTTCCTGCATGTA+TGG - chr8_4:51575035-51575054 Msa1331880:CDS 30.0%
TATGGATGTTGTATATCTTG+TGG - chr8_4:51575161-51575180 Msa1331880:CDS 30.0%
!! TCTTGTAACTTGTTGCAATA+AGG - chr8_4:51575206-51575225 Msa1331880:CDS 30.0%
ATTTGCTCCGAATTTAATTG+CGG + chr8_4:51575493-51575512 None:intergenic 30.0%
ATGTTCATTTCATGTCCATA+TGG + chr8_4:51575518-51575537 None:intergenic 30.0%
! GCTGATTTAGATATTGTGAA+TGG - chr8_4:51575669-51575688 Msa1331880:CDS 30.0%
!! ATATTGTGAATGGATTTTCC+AGG - chr8_4:51575679-51575698 Msa1331880:CDS 30.0%
! TGTTTAAGGTTGTCAAGTTA+GGG + chr8_4:51576365-51576384 None:intergenic 30.0%
! ATGTTTAAGGTTGTCAAGTT+AGG + chr8_4:51576366-51576385 None:intergenic 30.0%
ATGTTCTATGATTGGAAATG+AGG - chr8_4:51576392-51576411 Msa1331880:intron 30.0%
TGTTCTATGATTGGAAATGA+GGG - chr8_4:51576393-51576412 Msa1331880:intron 30.0%
GTTACATTCAATCTCTATCA+TGG - chr8_4:51576446-51576465 Msa1331880:intron 30.0%
GAATATTACCGATATTTCTC+TGG - chr8_4:51576551-51576570 Msa1331880:intron 30.0%
AATAACAGCCAGAGAAATAT+CGG + chr8_4:51576562-51576581 None:intergenic 30.0%
TTCGAAATGTAAACGAAAGA+GGG - chr8_4:51576625-51576644 Msa1331880:intron 30.0%
!! CTTCGTTTTGATGATAGAAA+GGG + chr8_4:51576901-51576920 None:intergenic 30.0%
!! ACTTCGTTTTGATGATAGAA+AGG + chr8_4:51576902-51576921 None:intergenic 30.0%
AACTTGCATCAGTAATATTC+TGG + chr8_4:51577271-51577290 None:intergenic 30.0%
GAATATTACTGATGCAAGTT+TGG - chr8_4:51577271-51577290 Msa1331880:intron 30.0%
AGTTTCTCATGGAGAATTTA+TGG - chr8_4:51577528-51577547 Msa1331880:intron 30.0%
TTTATGGAGATGTGATATTC+TGG - chr8_4:51577544-51577563 Msa1331880:intron 30.0%
GTTATTAATAATGAAGCAGC+AGG - chr8_4:51577622-51577641 Msa1331880:intron 30.0%
TCATGAAACTATAGCCAAAA+GGG + chr8_4:51577809-51577828 None:intergenic 30.0%
AACACCTCAATTCTGAATAA+AGG - chr8_4:51577987-51578006 Msa1331880:intron 30.0%
!! TGGTGATGGCATACAAATTA+TGG - chr8_4:51573600-51573619 Msa1331880:three_prime_UTR 35.0%
! ACGATCTAATGTTGATTGTG+AGG - chr8_4:51573682-51573701 Msa1331880:three_prime_UTR 35.0%
!!! GAAATCATGGTTTTGAAGTG+AGG - chr8_4:51573795-51573814 Msa1331880:three_prime_UTR 35.0%
! TTGGACTTTTCAGATCACAA+TGG - chr8_4:51573964-51573983 Msa1331880:three_prime_UTR 35.0%
! AAAGGCATAGCTAACTGAAT+AGG + chr8_4:51574039-51574058 None:intergenic 35.0%
CCAATGTACAATAGAGGAAT+CGG - chr8_4:51574293-51574312 Msa1331880:CDS 35.0%
TTTATGAAATAGAGCCGTTG+AGG + chr8_4:51574393-51574412 None:intergenic 35.0%
CTTTCACAAAAACCAATACC+AGG + chr8_4:51574516-51574535 None:intergenic 35.0%
!!! GGTATTGGTTTTTGTGAAAG+TGG - chr8_4:51574516-51574535 Msa1331880:CDS 35.0%
!! ATTAGGTGTCATTCATGGAA+AGG + chr8_4:51574638-51574657 None:intergenic 35.0%
TGTCGTGAAACAAAAGAAAG+TGG + chr8_4:51574690-51574709 None:intergenic 35.0%
GAAGAATACACAACACAAAG+AGG + chr8_4:51574850-51574869 None:intergenic 35.0%
AATCAAACAACCATACATGC+AGG + chr8_4:51575048-51575067 None:intergenic 35.0%
! ATCAGTGTCTCATTTAGCTT+TGG - chr8_4:51575793-51575812 Msa1331880:CDS 35.0%
TGCAAAAGGATGTCATATGT+TGG - chr8_4:51576272-51576291 Msa1331880:intron 35.0%
TATTGCAATCAAACCCTTGT+TGG + chr8_4:51576331-51576350 None:intergenic 35.0%
!! CGTGTGTAGTTTGTTATCAT+CGG - chr8_4:51576494-51576513 Msa1331880:intron 35.0%
GATATTTCTCTGGCTGTTAT+TGG - chr8_4:51576561-51576580 Msa1331880:intron 35.0%
!! TCGATATCACTTTTCCACAA+TGG + chr8_4:51576587-51576606 None:intergenic 35.0%
TGGAAAAGTGATATCGAATC+TGG - chr8_4:51576590-51576609 Msa1331880:intron 35.0%
CTTCGAAATGTAAACGAAAG+AGG - chr8_4:51576624-51576643 Msa1331880:intron 35.0%
! ATGTAAACGAAAGAGGGTTT+TGG - chr8_4:51576631-51576650 Msa1331880:intron 35.0%
! TGTAAACGAAAGAGGGTTTT+GGG - chr8_4:51576632-51576651 Msa1331880:intron 35.0%
! ACTTACACTTGTGAAGTGTT+TGG - chr8_4:51576929-51576948 Msa1331880:intron 35.0%
! CTTACACTTGTGAAGTGTTT+GGG - chr8_4:51576930-51576949 Msa1331880:intron 35.0%
AGTTTCGAATGGTTACAGAT+CGG + chr8_4:51577007-51577026 None:intergenic 35.0%
CTTCACAATTCTCCAAAAGA+GGG + chr8_4:51577136-51577155 None:intergenic 35.0%
AGACAACATAGTTTCTGAGT+TGG - chr8_4:51577199-51577218 Msa1331880:intron 35.0%
CTCGAAATACTAAATCTCGA+TGG - chr8_4:51577242-51577261 Msa1331880:intron 35.0%
GTGCCTTTCCTTATGAAATT+AGG - chr8_4:51577446-51577465 Msa1331880:intron 35.0%
TGGCCTAATTTCATAAGGAA+AGG + chr8_4:51577452-51577471 None:intergenic 35.0%
TTTCCTTATGAAATTAGGCC+AGG - chr8_4:51577451-51577470 Msa1331880:intron 35.0%
ATTAATAATGAAGCAGCAGG+TGG - chr8_4:51577625-51577644 Msa1331880:intron 35.0%
CTCATGAAACTATAGCCAAA+AGG + chr8_4:51577810-51577829 None:intergenic 35.0%
AGAATTCTGTTACTGAGTCT+TGG - chr8_4:51577828-51577847 Msa1331880:intron 35.0%
! TGGGTTTTACTTTGTATCAC+TGG - chr8_4:51577883-51577902 Msa1331880:intron 35.0%
! TAGCTATGCCTTTTGACATG+TGG - chr8_4:51574046-51574065 Msa1331880:CDS 40.0%
ATGTTGAGCCACATGTCAAA+AGG + chr8_4:51574057-51574076 None:intergenic 40.0%
CCGATTCCTCTATTGTACAT+TGG + chr8_4:51574296-51574315 None:intergenic 40.0%
ATGTACAATAGAGGAATCGG+TGG - chr8_4:51574296-51574315 Msa1331880:CDS 40.0%
GTTAACCACTTTGTAAGGCA+AGG - chr8_4:51574359-51574378 Msa1331880:CDS 40.0%
AAGAACCTTGCCTTACAAAG+TGG + chr8_4:51574367-51574386 None:intergenic 40.0%
!!! TGGTTTTGTGTTCCTGGTAT+TGG - chr8_4:51574501-51574520 Msa1331880:CDS 40.0%
! TGTGAAAGTGGTATTTGCTG+AGG - chr8_4:51574528-51574547 Msa1331880:CDS 40.0%
!! TGGTTTGGTTGGACTAAGAA+AGG - chr8_4:51574555-51574574 Msa1331880:CDS 40.0%
! AATGCTATGCTGCAGGATTT+TGG + chr8_4:51574593-51574612 None:intergenic 40.0%
TGTGCTAGATTGCAAGTGAT+AGG - chr8_4:51575363-51575382 Msa1331880:CDS 40.0%
ATTCGGAGCAAATCTCCATA+TGG - chr8_4:51575500-51575519 Msa1331880:CDS 40.0%
GTGATGTTGAACTGCATTCT+GGG - chr8_4:51575701-51575720 Msa1331880:CDS 40.0%
TGATGTTGAACTGCATTCTG+GGG - chr8_4:51575702-51575721 Msa1331880:CDS 40.0%
!! CTAAATGAGACACTGATTCG+AGG + chr8_4:51575790-51575809 None:intergenic 40.0%
CAAAGAGACATTCATCCGAA+AGG + chr8_4:51575861-51575880 None:intergenic 40.0%
ATATTCAGACGACTTCCAAG+TGG - chr8_4:51575883-51575902 Msa1331880:intron 40.0%
! AAGCCACCTTTTTGATACAC+AGG + chr8_4:51575929-51575948 None:intergenic 40.0%
! AGTCAAGTTGTTTCCTCTGA+TGG + chr8_4:51576142-51576161 None:intergenic 40.0%
! TGTGTCTTCCATTGGTGATA+AGG - chr8_4:51576236-51576255 Msa1331880:intron 40.0%
! GTGTCTTCCATTGGTGATAA+GGG - chr8_4:51576237-51576256 Msa1331880:intron 40.0%
GGTTTGATTGCAATAGCTGA+AGG - chr8_4:51576336-51576355 Msa1331880:intron 40.0%
AAGCTTTACCCTTGACAAGT+CGG + chr8_4:51576523-51576542 None:intergenic 40.0%
!! ATATCGAATCTGGCTCTAAG+TGG - chr8_4:51576600-51576619 Msa1331880:intron 40.0%
TTACCATTACTTCCTGCGAA+GGG - chr8_4:51576694-51576713 Msa1331880:intron 40.0%
AAATGCTACCAATCCATCGT+CGG + chr8_4:51576802-51576821 None:intergenic 40.0%
TGTAACAGATTCACCCAATG+TGG - chr8_4:51576864-51576883 Msa1331880:intron 40.0%
GTAACAGATTCACCCAATGT+GGG - chr8_4:51576865-51576884 Msa1331880:intron 40.0%
AGATCAACATGCTGAAGTTG+CGG + chr8_4:51577077-51577096 None:intergenic 40.0%
AATTCTCCAAAAGAGGGAGA+AGG + chr8_4:51577130-51577149 None:intergenic 40.0%
GCTTCACAATTCTCCAAAAG+AGG + chr8_4:51577137-51577156 None:intergenic 40.0%
!! CTTTTGGAGAATTGTGAAGC+TGG - chr8_4:51577137-51577156 Msa1331880:intron 40.0%
CTTGTCAAGGTGAACCTTAA+AGG - chr8_4:51577161-51577180 Msa1331880:intron 40.0%
! TCAAGTTGCAGCAACCTTTA+AGG + chr8_4:51577178-51577197 None:intergenic 40.0%
ATGCCTGGCCTAATTTCATA+AGG + chr8_4:51577457-51577476 None:intergenic 40.0%
! AAATTAGGCCAGGCATTGTT+GGG - chr8_4:51577461-51577480 Msa1331880:intron 40.0%
TATTCAATCCCAACAATGCC+TGG + chr8_4:51577472-51577491 None:intergenic 40.0%
CAACGCAATTGAGTTTCTCA+TGG - chr8_4:51577517-51577536 Msa1331880:intron 40.0%
CGGAACAAACAAAAGCTCTT+TGG + chr8_4:51577730-51577749 None:intergenic 40.0%
! TGCAAAAATAGGGCTAGTGA+CGG + chr8_4:51577750-51577769 None:intergenic 40.0%
CTTCACCATCTCATGTCTTG+AGG - chr8_4:51573646-51573665 Msa1331880:three_prime_UTR 45.0%
GTACACCTCAAGACATGAGA+TGG + chr8_4:51573654-51573673 None:intergenic 45.0%
GTGGCTCAATGTTCATGTAC+CGG - chr8_4:51574315-51574334 Msa1331880:CDS 45.0%
GCAAGGTTCTTCAACCTCAA+CGG - chr8_4:51574376-51574395 Msa1331880:CDS 45.0%
!!! AGAGAGTGGTTTTGTGTTCC+TGG - chr8_4:51574495-51574514 Msa1331880:CDS 45.0%
! GAAAGTGGTATTTGCTGAGG+TGG - chr8_4:51574531-51574550 Msa1331880:CDS 45.0%
! ATTTGCTGAGGTGGTTGGTT+TGG - chr8_4:51574540-51574559 Msa1331880:CDS 45.0%
CTACTCTCATTGACATGACC+AGG + chr8_4:51574937-51574956 None:intergenic 45.0%
ATCCCAAGAACCGACTAATC+CGG - chr8_4:51575439-51575458 Msa1331880:CDS 45.0%
AGCAGGGCCGCAATTAAATT+CGG - chr8_4:51575483-51575502 Msa1331880:CDS 45.0%
TGTGCTAGACTGCAAGTGAT+AGG - chr8_4:51575548-51575567 Msa1331880:CDS 45.0%
GGAACAATCATGTGTGCATG+TGG - chr8_4:51575647-51575666 Msa1331880:CDS 45.0%
GAATGCAGTTCAACATCACC+TGG + chr8_4:51575700-51575719 None:intergenic 45.0%
GGTGATGTTGAACTGCATTC+TGG - chr8_4:51575700-51575719 Msa1331880:CDS 45.0%
GATGTTGAACTGCATTCTGG+GGG - chr8_4:51575703-51575722 Msa1331880:CDS 45.0%
TTCTATGGATACCGGGAGTA+GGG - chr8_4:51575726-51575745 Msa1331880:CDS 45.0%
AATAGTGTACACCCTACTCC+CGG + chr8_4:51575740-51575759 None:intergenic 45.0%
CAGGTGCCTGTGTATCAAAA+AGG - chr8_4:51575920-51575939 Msa1331880:intron 45.0%
GTGCCTGTGTATCAAAAAGG+TGG - chr8_4:51575923-51575942 Msa1331880:intron 45.0%
GAGAGTGATGAAGATGCTGA+AGG - chr8_4:51576012-51576031 Msa1331880:intron 45.0%
GATGAAGATGCTGAAGGTGA+TGG - chr8_4:51576018-51576037 Msa1331880:intron 45.0%
! AAGGTGATGGCTACCTTACA+AGG - chr8_4:51576031-51576050 Msa1331880:intron 45.0%
! TACCTTACAAGGCGTTTGGA+AGG - chr8_4:51576042-51576061 Msa1331880:intron 45.0%
! ACCTTACAAGGCGTTTGGAA+GGG - chr8_4:51576043-51576062 Msa1331880:intron 45.0%
ATAGCTTTCCAAGTCCACCA+CGG + chr8_4:51576119-51576138 None:intergenic 45.0%
CTTGGAAAGCTATCCATCAG+AGG - chr8_4:51576126-51576145 Msa1331880:intron 45.0%
! AGAGGAAACAACTTGACTCG+AGG - chr8_4:51576144-51576163 Msa1331880:intron 45.0%
GTGAAAGTGACCTGAGAGAA+GGG + chr8_4:51576209-51576228 None:intergenic 45.0%
AGTGAAAGTGACCTGAGAGA+AGG + chr8_4:51576210-51576229 None:intergenic 45.0%
CTGTGGAATGTGTCTTCCAT+TGG - chr8_4:51576228-51576247 Msa1331880:intron 45.0%
ACACAGACCCTTATCACCAA+TGG + chr8_4:51576247-51576266 None:intergenic 45.0%
GGTCTGTGTGAGATTGCAAA+AGG - chr8_4:51576258-51576277 Msa1331880:intron 45.0%
!! TGTTGGTGATCGACGAAGAA+TGG + chr8_4:51576314-51576333 None:intergenic 45.0%
TTCTTCGTCGATCACCAACA+AGG - chr8_4:51576314-51576333 Msa1331880:intron 45.0%
TCTTCGTCGATCACCAACAA+GGG - chr8_4:51576315-51576334 Msa1331880:intron 45.0%
! ATCATGGGTTGTCCTCTTGT+TGG - chr8_4:51576462-51576481 Msa1331880:intron 45.0%
GATAACAAACTACACACGCC+AGG + chr8_4:51576492-51576511 None:intergenic 45.0%
!!! GAAAGAGGGTTTTGGGTCAT+GGG - chr8_4:51576639-51576658 Msa1331880:intron 45.0%
!!! AAAGAGGGTTTTGGGTCATG+GGG - chr8_4:51576640-51576659 Msa1331880:intron 45.0%
TGGTGAAGGTCTACAGAAAC+TGG - chr8_4:51576665-51576684 Msa1331880:intron 45.0%
TGAAGGTCTACAGAAACTGG+TGG - chr8_4:51576668-51576687 Msa1331880:intron 45.0%
CTTACCATTACTTCCTGCGA+AGG - chr8_4:51576693-51576712 Msa1331880:intron 45.0%
TACCATTACTTCCTGCGAAG+GGG - chr8_4:51576695-51576714 Msa1331880:intron 45.0%
!! TGATAAGAGCATCGAAGCCA+TGG - chr8_4:51576722-51576741 Msa1331880:intron 45.0%
!! GATAAGAGCATCGAAGCCAT+GGG - chr8_4:51576723-51576742 Msa1331880:intron 45.0%
ATACAACGCAACACCTACGA+AGG + chr8_4:51576779-51576798 None:intergenic 45.0%
CTCGAGAGATATTGCAGATC+TGG + chr8_4:51576826-51576845 None:intergenic 45.0%
GTTACACTCTTCCAACTGCA+AGG + chr8_4:51576850-51576869 None:intergenic 45.0%
! GGCATCGAAAATCCCACATT+GGG + chr8_4:51576880-51576899 None:intergenic 45.0%
CATCTATGCTTTCACCTTGC+AGG - chr8_4:51576976-51576995 Msa1331880:intron 45.0%
ATTCGAAACTGCCCTGGTTT+CGG - chr8_4:51577017-51577036 Msa1331880:intron 45.0%
CTTCAGCATGTTGATCTGAC+TGG - chr8_4:51577080-51577099 Msa1331880:intron 45.0%
TTGTGAAGCTGGACTTGTCA+AGG - chr8_4:51577148-51577167 Msa1331880:intron 45.0%
! ACATAGTTTCTGAGTTGGCC+AGG - chr8_4:51577204-51577223 Msa1331880:intron 45.0%
AGACGTCTAGATCATTCAGC+AGG + chr8_4:51577319-51577338 None:intergenic 45.0%
CTCTCTATGTCTGACTGTTC+TGG - chr8_4:51577407-51577426 Msa1331880:intron 45.0%
! GAAATTAGGCCAGGCATTGT+TGG - chr8_4:51577460-51577479 Msa1331880:intron 45.0%
TCAGCAGTTCTATCGCGATT+AGG + chr8_4:51577570-51577589 None:intergenic 45.0%
CGCGATAGAACTGCTGAATA+AGG - chr8_4:51577573-51577592 Msa1331880:intron 45.0%
TGGATTCGCTGTGTGATTTG+TGG - chr8_4:51577691-51577710 Msa1331880:intron 45.0%
AAGCAATGTGCGATCTAGAG+TGG + chr8_4:51577864-51577883 None:intergenic 45.0%
ACTCTAGATCGCACATTGCT+TGG - chr8_4:51577863-51577882 Msa1331880:intron 45.0%
CTCTAGATCGCACATTGCTT+GGG - chr8_4:51577864-51577883 Msa1331880:intron 45.0%
! GTGGTATTTGCTGAGGTGGT+TGG - chr8_4:51574535-51574554 Msa1331880:CDS 50.0%
TAGGTGCAATGCTATGCTGC+AGG + chr8_4:51574600-51574619 None:intergenic 50.0%
! CTGTTTCTTGTGCTCATGCC+TGG - chr8_4:51574916-51574935 Msa1331880:CDS 50.0%
!! GGATTAGTCGGTTCTTGGGA+TGG + chr8_4:51575440-51575459 None:intergenic 50.0%
TCCCAAGAACCGACTAATCC+GGG - chr8_4:51575440-51575459 Msa1331880:CDS 50.0%
!! GGATTGTTCCCCGGATTAGT+CGG + chr8_4:51575452-51575471 None:intergenic 50.0%
TTTAATTGCGGCCCTGCTAC+TGG + chr8_4:51575481-51575500 None:intergenic 50.0%
! ACTGCATTCTGGGGGTTCTA+TGG - chr8_4:51575711-51575730 Msa1331880:CDS 50.0%
TCTGGGGGTTCTATGGATAC+CGG - chr8_4:51575718-51575737 Msa1331880:CDS 50.0%
GTTCTATGGATACCGGGAGT+AGG - chr8_4:51575725-51575744 Msa1331880:CDS 50.0%
! GCCTAGCATCGAGATCCTTT+CGG - chr8_4:51575843-51575862 Msa1331880:CDS 50.0%
TCCGAAAGGATCTCGATGCT+AGG + chr8_4:51575847-51575866 None:intergenic 50.0%
GAGCTTCTCTCTTTGCCACT+TGG + chr8_4:51575901-51575920 None:intergenic 50.0%
AGTGGCAAAGAGAGAAGCTC+AGG - chr8_4:51575901-51575920 Msa1331880:intron 50.0%
! TGGCTACCTTACAAGGCGTT+TGG - chr8_4:51576038-51576057 Msa1331880:intron 50.0%
TCCCTTCCAAACGCCTTGTA+AGG + chr8_4:51576047-51576066 None:intergenic 50.0%
! TTACAAGGCGTTTGGAAGGG+AGG - chr8_4:51576046-51576065 Msa1331880:intron 50.0%
GGAGGAAAGCCACTGATGTA+AGG - chr8_4:51576064-51576083 Msa1331880:intron 50.0%
AGCAGCAAGCCTTACATCAG+TGG + chr8_4:51576076-51576095 None:intergenic 50.0%
!! AGGCTTGCTGCTATTGCTGT+TGG - chr8_4:51576084-51576103 Msa1331880:intron 50.0%
!! GGCTTGCTGCTATTGCTGTT+GGG - chr8_4:51576085-51576104 Msa1331880:intron 50.0%
! CTCTCAGGTCACTTTCACTG+TGG - chr8_4:51576211-51576230 Msa1331880:intron 50.0%
TGTCCTCTTGTTGGAGATCC+TGG - chr8_4:51576471-51576490 Msa1331880:intron 50.0%
! ATCGGCTTCCGACTTGTCAA+GGG - chr8_4:51576512-51576531 Msa1331880:intron 50.0%
CTGGCTGTTATTGGCCATTG+TGG - chr8_4:51576570-51576589 Msa1331880:intron 50.0%
!!! CGAAAGAGGGTTTTGGGTCA+TGG - chr8_4:51576638-51576657 Msa1331880:intron 50.0%
TACCCCTTCGCAGGAAGTAA+TGG + chr8_4:51576700-51576719 None:intergenic 50.0%
CTTATCAGTTACCCCTTCGC+AGG + chr8_4:51576709-51576728 None:intergenic 50.0%
GTTTGGGAAACCTCTACCCA+TGG + chr8_4:51576742-51576761 None:intergenic 50.0%
! GGCACATCTGCTTCAGGTTT+GGG + chr8_4:51576758-51576777 None:intergenic 50.0%
! AGGCACATCTGCTTCAGGTT+TGG + chr8_4:51576759-51576778 None:intergenic 50.0%
! TACGAAGGCACATCTGCTTC+AGG + chr8_4:51576764-51576783 None:intergenic 50.0%
TGAAGCAGATGTGCCTTCGT+AGG - chr8_4:51576763-51576782 Msa1331880:intron 50.0%
TGTTGCGTTGTATCCGACGA+TGG - chr8_4:51576786-51576805 Msa1331880:intron 50.0%
CGTTGTATCCGACGATGGAT+TGG - chr8_4:51576791-51576810 Msa1331880:intron 50.0%
ATCTCTCGAGACCTTGCAGT+TGG - chr8_4:51576836-51576855 Msa1331880:intron 50.0%
!! GGGCATCGAAAATCCCACAT+TGG + chr8_4:51576881-51576900 None:intergenic 50.0%
ACAGATCGGAGATACCTGCA+AGG + chr8_4:51576993-51577012 None:intergenic 50.0%
GTAACCATTCGAAACTGCCC+TGG - chr8_4:51577011-51577030 Msa1331880:intron 50.0%
GAAACCAGGGCAGTTTCGAA+TGG + chr8_4:51577018-51577037 None:intergenic 50.0%
! AGTGCTAGCTTGGCTGTGAT+CGG - chr8_4:51577041-51577060 Msa1331880:intron 50.0%
CTTTGCCGCATAACAGAAGC+TGG - chr8_4:51577104-51577123 Msa1331880:intron 50.0%
GAAGGCCAGCTTCTGTTATG+CGG + chr8_4:51577112-51577131 None:intergenic 50.0%
CGTCTAGATCATTCAGCAGG+AGG + chr8_4:51577316-51577335 None:intergenic 50.0%
AAGTGTGCAATCACCGATGC+AGG - chr8_4:51577341-51577360 Msa1331880:intron 50.0%
ATGATCAGCACGAGCGAGAA+CGG + chr8_4:51577372-51577391 None:intergenic 50.0%
GCTGATGCGACAATCAAGTG+TGG - chr8_4:51577671-51577690 Msa1331880:intron 50.0%
! CGCTGTGTGATTTGTGGACT+CGG - chr8_4:51577697-51577716 Msa1331880:intron 50.0%
CTTTCCACCTTTCTCCCTCC+CGG - chr8_4:51573738-51573757 Msa1331880:three_prime_UTR 55.0%
!! GCTGAGGTGGTTGGTTTGGT+TGG - chr8_4:51574544-51574563 Msa1331880:CDS 55.0%
!! CCCCGGATTAGTCGGTTCTT+GGG + chr8_4:51575444-51575463 None:intergenic 55.0%
CCCAAGAACCGACTAATCCG+GGG - chr8_4:51575441-51575460 Msa1331880:CDS 55.0%
!! TCCCCGGATTAGTCGGTTCT+TGG + chr8_4:51575445-51575464 None:intergenic 55.0%
AATCCCACCGTCCAGTAGCA+GGG - chr8_4:51575467-51575486 Msa1331880:CDS 55.0%
CTGGGGGTTCTATGGATACC+GGG - chr8_4:51575719-51575738 Msa1331880:CDS 55.0%
! GCTGCTATTGCTGTTGGGAC+TGG - chr8_4:51576090-51576109 Msa1331880:intron 55.0%
! ACTCGAGGTGTTACAGACCG+CGG - chr8_4:51576159-51576178 Msa1331880:intron 55.0%
ACGCCAGGATCTCCAACAAG+AGG + chr8_4:51576477-51576496 None:intergenic 55.0%
!! CATCGGCTTCCGACTTGTCA+AGG - chr8_4:51576511-51576530 Msa1331880:intron 55.0%
!!! GGGTTTTGGGTCATGGGGTT+TGG - chr8_4:51576645-51576664 Msa1331880:intron 55.0%
!! TGGGTCATGGGGTTTGGTGA+AGG - chr8_4:51576651-51576670 Msa1331880:intron 55.0%
! AGCATCGAAGCCATGGGTAG+AGG - chr8_4:51576729-51576748 Msa1331880:intron 55.0%
AGCTAGCACTGCCGAAACCA+GGG + chr8_4:51577031-51577050 None:intergenic 55.0%
AAGCTAGCACTGCCGAAACC+AGG + chr8_4:51577032-51577051 None:intergenic 55.0%
TGGTTTCGGCAGTGCTAGCT+TGG - chr8_4:51577031-51577050 Msa1331880:intron 55.0%
! GTGCTAGCTTGGCTGTGATC+GGG - chr8_4:51577042-51577061 Msa1331880:intron 55.0%
!!! AGCTGGCCTTCTCCCTCTTT+TGG - chr8_4:51577121-51577140 Msa1331880:intron 55.0%
! TCTGAGTTGGCCAGGCTACA+TGG - chr8_4:51577212-51577231 Msa1331880:intron 55.0%
GAGAGTTCCACCATGTAGCC+TGG + chr8_4:51577225-51577244 None:intergenic 55.0%
GAGAACGGCTATGCCTGCAT+CGG + chr8_4:51577357-51577376 None:intergenic 55.0%
ACACACTCCGGGAGGGAGAA+AGG + chr8_4:51573748-51573767 None:intergenic 60.0%
TTTCTCCCTCCCGGAGTGTG+TGG - chr8_4:51573747-51573766 Msa1331880:three_prime_UTR 60.0%
GTCTAGTGGCCACACACTCC+GGG + chr8_4:51573759-51573778 None:intergenic 60.0%
GGTCTAGTGGCCACACACTC+CGG + chr8_4:51573760-51573779 None:intergenic 60.0%
TGGACGGTGGGATTGTTCCC+CGG + chr8_4:51575461-51575480 None:intergenic 60.0%
CAATCCCACCGTCCAGTAGC+AGG - chr8_4:51575466-51575485 Msa1331880:CDS 60.0%
ATTGCGGCCCTGCTACTGGA+CGG + chr8_4:51575477-51575496 None:intergenic 60.0%
!! ACTGGTTGCCGTGGTGGACT+TGG - chr8_4:51576108-51576127 Msa1331880:intron 60.0%
GAGCAACTGCTGAGAGACCG+CGG + chr8_4:51576179-51576198 None:intergenic 60.0%
GGTCTCTCAGCAGTTGCTCG+TGG - chr8_4:51576180-51576199 Msa1331880:intron 60.0%
CTCGTGGTTGCCCTTCTCTC+AGG - chr8_4:51576196-51576215 Msa1331880:intron 60.0%
GAGTTGGCCAGGCTACATGG+TGG - chr8_4:51577215-51577234 Msa1331880:intron 60.0%
CACTCCGGGAGGGAGAAAGG+TGG + chr8_4:51573745-51573764 None:intergenic 65.0%
AGTGGCCACACACTCCGGGA+GGG + chr8_4:51573755-51573774 None:intergenic 65.0%
TAGTGGCCACACACTCCGGG+AGG + chr8_4:51573756-51573775 None:intergenic 65.0%
!! GCTGTTGGGACTGGTTGCCG+TGG - chr8_4:51576099-51576118 Msa1331880:intron 65.0%
!! GTTGGGACTGGTTGCCGTGG+TGG - chr8_4:51576102-51576121 Msa1331880:intron 65.0%
CGGCCCTGCTACTGGACGGT+GGG + chr8_4:51575473-51575492 None:intergenic 70.0%
GCGGCCCTGCTACTGGACGG+TGG + chr8_4:51575474-51575493 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 51573591 51578010 51573591 ID=Msa1331880;Name=Msa1331880
chr8_4 mRNA 51573591 51578010 51573591 ID=Msa1331880-mRNA-1;Parent=Msa1331880;Name=Msa1331880-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0.5|1|0|0.5|2|439|625
chr8_4 exon 51573591 51575900 51573591 ID=Msa1331880-mRNA-1:exon:15278;Parent=Msa1331880-mRNA-1
chr8_4 exon 51578004 51578010 51578004 ID=Msa1331880-mRNA-1:exon:15277;Parent=Msa1331880-mRNA-1
chr8_4 CDS 51578004 51578010 51578004 ID=Msa1331880-mRNA-1:cds;Parent=Msa1331880-mRNA-1
chr8_4 CDS 51574030 51575900 51574030 ID=Msa1331880-mRNA-1:cds;Parent=Msa1331880-mRNA-1
chr8_4 three_prime_UTR 51573591 51574029 51573591 ID=Msa1331880-mRNA-1:three_prime_utr;Parent=Msa1331880-mRNA-1
Gene Sequence

>Msa1331880

ATGCTGAGTGATGTTGAACTGCATTCTGGGGGTTCTATGGATACCGGGAGTAGGGTGTACACTATTAGTGATGTGCACTGTTCTACAAAGCGACCTCGAATCAGTGTCTCATTTAGCTTTGGAGCTCTTGAGCATGAGCAAGATCTTAAGCCTAGCATCGAGATCCTTTCGGATGAATGTCTCTTTGAGATATTCAGACGACTTCCAAGTGGCAAAGAGAGAAGCTCAGGTGCCTGTGTATCAAAAAGGTGGCTTATGCTTATGAGCAGTATTTGCAAAGATGACATTGAATCTGATGTAGAAACAATCTCTTCAGATGAGAGTGATGAAGATGCTGAAGGTGATGGCTACCTTACAAGGCGTTTGGAAGGGAGGAAAGCCACTGATGTAAGGCTTGCTGCTATTGCTGTTGGGACTGGTTGCCGTGGTGGACTTGGAAAGCTATCCATCAGAGGAAACAACTTGACTCGAGGTGTTACAGACCGCGGTCTCTCAGCAGTTGCTCGTGGTTGCCCTTCTCTCAGGTCACTTTCACTGTGGAATGTGTCTTCCATTGGTGATAAGGGTCTGTGTGAGATTGCAAAAGGATGTCATATGTTGGAGACACTAGACTTGTGCCATTCTTCGTCGATCACCAACAAGGGTTTGATTGCAATAGCTGAAGGTTGCCCTAACTTGACAACCTTAAACATTGAATCATGTTCTATGATTGGAAATGAGGGTTTACAAGCTGTTGCAAAGTTATGTCCTAAGTTACATTCAATCTCTATCATGGGTTGTCCTCTTGTTGGAGATCCTGGCGTGTGTAGTTTGTTATCATCGGCTTCCGACTTGTCAAGGGTAAAGCTTCATAATTTGAATATTACCGATATTTCTCTGGCTGTTATTGGCCATTGTGGAAAAGTGATATCGAATCTGGCTCTAAGTGGTCTTCGAAATGTAAACGAAAGAGGGTTTTGGGTCATGGGGTTTGGTGAAGGTCTACAGAAACTGGTGGCACTTACCATTACTTCCTGCGAAGGGGTAACTGATAAGAGCATCGAAGCCATGGGTAGAGGTTTCCCAAACCTGAAGCAGATGTGCCTTCGTAGGTGTTGCGTTGTATCCGACGATGGATTGGTAGCATTTGCCAGATCTGCAATATCTCTCGAGACCTTGCAGTTGGAAGAGTGTAACAGATTCACCCAATGTGGGATTTTCGATGCCCTTTCTATCATCAAAACGAAGTTGAAATCACTTACACTTGTGAAGTGTTTGGGAATTCAAGAGATTGATGTAGAAGCATCTATGCTTTCACCTTGCAGGTATCTCCGATCTGTAACCATTCGAAACTGCCCTGGTTTCGGCAGTGCTAGCTTGGCTGTGATCGGGAAATTGTGTCCGCAACTTCAGCATGTTGATCTGACTGGACTTTGCCGCATAACAGAAGCTGGCCTTCTCCCTCTTTTGGAGAATTGTGAAGCTGGACTTGTCAAGGTGAACCTTAAAGGTTGCTGCAACTTGACAGACAACATAGTTTCTGAGTTGGCCAGGCTACATGGTGGAACTCTCGAAATACTAAATCTCGATGGATGCCAGAATATTACTGATGCAAGTTTGGTTGCAGTTGCAGACAACTGCCTCCTGCTGAATGATCTAGACGTCTCAAAGTGTGCAATCACCGATGCAGGCATAGCCGTTCTCGCTCGTGCTGATCATCTTAGTTTGCATGTGCTCTCTATGTCTGACTGTTCTGGTATATCGAACAAGTGTGTGCCTTTCCTTATGAAATTAGGCCAGGCATTGTTGGGATTGAATATTAAATATTGCAATGCAATTGGCAGCAACGCAATTGAGTTTCTCATGGAGAATTTATGGAGATGTGATATTCTGGCCTAA
Protein sequence

>Msa1331880

MLSDVELHSGGSMDTGSRVYTISDVHCSTKRPRISVSFSFGALEHEQDLKPSIEILSDECLFEIFRRLPSGKERSSGACVSKRWLMLMSSICKDDIESDVETISSDESDEDAEGDGYLTRRLEGRKATDVRLAAIAVGTGCRGGLGKLSIRGNNLTRGVTDRGLSAVARGCPSLRSLSLWNVSSIGDKGLCEIAKGCHMLETLDLCHSSSITNKGLIAIAEGCPNLTTLNIESCSMIGNEGLQAVAKLCPKLHSISIMGCPLVGDPGVCSLLSSASDLSRVKLHNLNITDISLAVIGHCGKVISNLALSGLRNVNERGFWVMGFGEGLQKLVALTITSCEGVTDKSIEAMGRGFPNLKQMCLRRCCVVSDDGLVAFARSAISLETLQLEECNRFTQCGIFDALSIIKTKLKSLTLVKCLGIQEIDVEASMLSPCRYLRSVTIRNCPGFGSASLAVIGKLCPQLQHVDLTGLCRITEAGLLPLLENCEAGLVKVNLKGCCNLTDNIVSELARLHGGTLEILNLDGCQNITDASLVAVADNCLLLNDLDVSKCAITDAGIAVLARADHLSLHVLSMSDCSGISNKCVPFLMKLGQALLGLNIKYCNAIGSNAIEFLMENLWRCDILA*