AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334420 MtrunA17_Chr4g0070611 95.114 307 15 0 1 307 1 307 0.0 605
Msa1334420 MtrunA17_Chr4g0070641 95.031 161 8 0 1 161 1 161 8.40e-113 323
Msa1334420 MtrunA17_Chr7g0275911 74.380 121 31 0 1 121 1 121 1.30e-67 211
Msa1334420 MtrunA17_Chr8g0346561 75.207 121 30 0 1 121 1 121 2.09e-65 207
Msa1334420 MtrunA17_Chr3g0121241 75.893 112 27 0 5 116 35 146 3.93e-62 199
Msa1334420 MtrunA17_Chr4g0068061 65.891 129 44 0 1 129 1 129 3.17e-60 195
Msa1334420 MtrunA17_Chr3g0131121 73.276 116 31 0 1 116 1 116 1.07e-59 192
Msa1334420 MtrunA17_Chr4g0037141 70.690 116 34 0 1 116 1 116 2.19e-58 189
Msa1334420 MtrunA17_Chr5g0435101 70.175 114 34 0 3 116 2 115 5.50e-58 185
Msa1334420 MtrunA17_Chr1g0203411 57.931 145 52 1 1 136 1 145 1.59e-57 187
Msa1334420 MtrunA17_Chr1g0194951 62.500 136 50 1 1 136 1 135 3.07e-57 188
Msa1334420 MtrunA17_Chr1g0187761 62.879 132 44 1 1 132 1 127 1.48e-56 183
Msa1334420 MtrunA17_Chr8g0343831 58.140 172 57 4 1 166 1 163 3.62e-56 182
Msa1334420 MtrunA17_Chr7g0274581 59.843 127 51 0 1 127 1 127 4.52e-56 180
Msa1334420 MtrunA17_Chr7g0261281 60.294 136 53 1 1 136 1 135 1.53e-55 181
Msa1334420 MtrunA17_Chr1g0167661 52.201 159 74 1 1 159 1 157 1.76e-55 180
Msa1334420 MtrunA17_Chr2g0323411 68.103 116 37 0 1 116 1 116 2.28e-55 182
Msa1334420 MtrunA17_Chr4g0039971 67.241 116 38 0 1 116 2 117 4.67e-55 182
Msa1334420 MtrunA17_Chr4g0055981 66.116 121 41 0 8 128 51 171 5.16e-55 178
Msa1334420 MtrunA17_Chr2g0281071 67.521 117 37 1 1 116 1 117 7.69e-55 181
Msa1334420 MtrunA17_Chr4g0048511 68.376 117 36 1 1 116 1 117 1.33e-54 181
Msa1334420 MtrunA17_Chr7g0217741 66.387 119 40 0 1 119 1 119 2.50e-54 179
Msa1334420 MtrunA17_Chr1g0167691 63.793 116 42 0 1 116 1 116 8.49e-54 176
Msa1334420 MtrunA17_Chr3g0115821 63.866 119 43 0 1 119 1 119 1.08e-53 178
Msa1334420 MtrunA17_Chr8g0385321 65.517 116 40 0 1 116 1 116 1.50e-53 177
Msa1334420 MtrunA17_Chr4g0022931 58.571 140 57 1 1 139 1 140 2.44e-53 175
Msa1334420 MtrunA17_Chr6g0453471 46.939 196 94 2 1 186 1 196 7.63e-53 177
Msa1334420 MtrunA17_Chr4g0042671 68.103 116 37 0 1 116 1 116 9.83e-53 177
Msa1334420 MtrunA17_Chr7g0269831 47.899 238 112 5 1 230 1 234 2.06e-52 175
Msa1334420 MtrunA17_Chr5g0410961 66.379 116 39 0 1 116 1 116 6.86e-52 174
Msa1334420 MtrunA17_Chr7g0217221 61.789 123 47 0 1 123 1 123 3.50e-51 170
Msa1334420 MtrunA17_Chr4g0022911 57.664 137 57 1 1 136 1 137 1.03e-50 169
Msa1334420 MtrunA17_Chr1g0151941 48.810 168 65 4 1 147 1 168 1.24e-50 167
Msa1334420 MtrunA17_Chr2g0323351 54.795 146 64 1 1 146 1 144 1.27e-50 167
Msa1334420 MtrunA17_Chr3g0110351 57.971 138 58 0 1 138 1 138 2.21e-50 169
Msa1334420 MtrunA17_Chr4g0022901 56.835 139 59 1 1 138 1 139 2.33e-50 167
Msa1334420 MtrunA17_Chr3g0103281 60.504 119 47 0 1 119 1 119 3.77e-50 169
Msa1334420 MtrunA17_Chr5g0395281 62.185 119 45 0 1 119 1 119 1.02e-49 167
Msa1334420 MtrunA17_Chr4g0057031 64.655 116 41 0 1 116 1 116 2.05e-49 165
Msa1334420 MtrunA17_Chr8g0349261 63.559 118 41 2 1 116 1 118 2.14e-49 166
Msa1334420 MtrunA17_Chr1g0193371 61.017 118 46 0 1 118 1 118 2.79e-49 167
Msa1334420 MtrunA17_Chr3g0092401 38.182 275 140 5 1 254 2 267 3.37e-49 166
Msa1334420 MtrunA17_Chr4g0058631 50.667 150 74 0 1 150 1 150 4.06e-49 167
Msa1334420 MtrunA17_Chr3g0117091 47.619 168 79 2 1 162 1 165 4.41e-49 167
Msa1334420 MtrunA17_Chr4g0044421 65.217 115 39 1 3 116 2 116 8.04e-49 161
Msa1334420 MtrunA17_Chr7g0270891 60.684 117 46 0 1 117 1 117 1.50e-48 166
Msa1334420 MtrunA17_Chr5g0434571 62.185 119 45 0 1 119 37 155 1.56e-48 165
Msa1334420 MtrunA17_Chr4g0022891 52.740 146 69 0 1 146 1 146 1.94e-48 162
Msa1334420 MtrunA17_Chr4g0060721 60.345 116 46 0 1 116 2 117 2.33e-48 164
Msa1334420 MtrunA17_Chr7g0228891 58.993 139 50 2 1 138 1 133 2.60e-48 162
Msa1334420 MtrunA17_Chr8g0360111 42.683 246 103 4 11 233 24 254 6.27e-48 161
Msa1334420 MtrunA17_Chr8g0387421 58.120 117 49 0 1 117 1 117 7.38e-48 162
Msa1334420 MtrunA17_Chr7g0240821 58.537 123 51 0 16 138 5 127 7.45e-48 160
Msa1334420 MtrunA17_Chr7g0254411 61.207 116 45 0 1 116 1 116 9.72e-48 163
Msa1334420 MtrunA17_Chr1g0193801 58.974 117 48 0 1 117 1 117 1.59e-47 164
Msa1334420 MtrunA17_Chr4g0028311 58.678 121 49 1 1 120 1 121 2.02e-47 161
Msa1334420 MtrunA17_Chr5g0434911 44.776 201 104 3 7 207 16 209 4.28e-47 159
Msa1334420 MtrunA17_Chr1g0211161 51.701 147 64 2 3 145 4 147 5.83e-47 157
Msa1334420 MtrunA17_Chr7g0271241 64.220 109 39 0 1 109 1 109 1.19e-46 161
Msa1334420 MtrunA17_Chr5g0434831 67.290 107 35 0 10 116 5 111 1.34e-46 155
Msa1334420 MtrunA17_Chr1g0152011 52.055 146 63 3 1 140 1 145 1.43e-46 160
Msa1334420 MtrunA17_Chr7g0220341 55.147 136 57 2 11 144 24 157 2.21e-46 157
Msa1334420 MtrunA17_Chr8g0342541 56.897 116 50 0 1 116 1 116 2.31e-46 159
Msa1334420 MtrunA17_Chr2g0330041 57.759 116 49 0 1 116 1 116 2.61e-46 160
Msa1334420 MtrunA17_Chr6g0452271 60.345 116 46 0 1 116 1 116 3.43e-46 159
Msa1334420 MtrunA17_Chr2g0311221 62.727 110 41 0 2 111 4 113 3.66e-46 158
Msa1334420 MtrunA17_Chr6g0453211 61.818 110 42 0 1 110 1 110 4.85e-46 158
Msa1334420 MtrunA17_Chr8g0342521 57.759 116 49 0 1 116 1 116 5.12e-46 159
Msa1334420 MtrunA17_Chr5g0397231 59.091 110 45 0 1 110 1 110 1.16e-45 157
Msa1334420 MtrunA17_Chr2g0327351 56.154 130 56 1 1 129 1 130 1.86e-45 156
Msa1334420 MtrunA17_Chr3g0135311 57.265 117 49 1 1 116 1 117 1.88e-45 157
Msa1334420 MtrunA17_Chr5g0434931 52.518 139 65 1 11 149 34 171 2.09e-45 155
Msa1334420 MtrunA17_Chr5g0400821 51.079 139 67 1 1 138 1 139 2.37e-45 155
Msa1334420 MtrunA17_Chr2g0309911 54.331 127 54 1 6 128 5 131 2.85e-45 155
Msa1334420 MtrunA17_Chr8g0342481 44.149 188 97 5 1 182 1 186 4.25e-45 157
Msa1334420 MtrunA17_Chr7g0228991 53.957 139 63 1 11 149 28 165 5.67e-45 154
Msa1334420 MtrunA17_Chr7g0264641 55.833 120 52 1 1 119 1 120 9.83e-45 153
Msa1334420 MtrunA17_Chr4g0022881 44.382 178 83 2 1 173 1 167 1.21e-44 152
Msa1334420 MtrunA17_Chr1g0194291 62.727 110 41 0 11 120 20 129 3.45e-44 151
Msa1334420 MtrunA17_Chr2g0328771 57.627 118 46 1 12 129 20 133 3.56e-44 153
Msa1334420 MtrunA17_Chr4g0032401 45.732 164 89 0 12 175 17 180 7.25e-44 152
Msa1334420 MtrunA17_Chr1g0168661 60.909 110 43 0 9 118 18 127 7.47e-44 150
Msa1334420 MtrunA17_Chr5g0434841 65.094 106 37 0 11 116 19 124 9.43e-44 152
Msa1334420 MtrunA17_Chr6g0450101 54.331 127 56 1 1 125 1 127 9.69e-44 149
Msa1334420 MtrunA17_Chr1g0186061 63.810 105 38 0 14 118 22 126 1.01e-43 150
Msa1334420 MtrunA17_Chr7g0228231 60.870 115 43 1 12 126 14 126 1.04e-43 148
Msa1334420 MtrunA17_Chr1g0209661 62.037 108 41 0 12 119 27 134 2.97e-43 150
Msa1334420 MtrunA17_Chr4g0054391 58.182 110 45 1 1 109 1 110 4.12e-43 149
Msa1334420 MtrunA17_Chr2g0294811 67.391 92 30 0 1 92 1 92 5.11e-43 144
Msa1334420 MtrunA17_Chr5g0417821 64.151 106 38 0 11 116 6 111 1.47e-42 148
Msa1334420 MtrunA17_Chr4g0072751 55.856 111 48 1 1 110 1 111 5.91e-42 148
Msa1334420 MtrunA17_Chr3g0088461 59.633 109 44 0 9 117 19 127 9.73e-42 147
Msa1334420 MtrunA17_Chr6g0487491 53.226 124 49 2 1 115 1 124 1.85e-41 144
Msa1334420 MtrunA17_Chr1g0194301 56.881 109 47 0 12 120 33 141 5.84e-41 143
Msa1334420 MtrunA17_Chr3g0080861 58.491 106 44 0 12 117 37 142 7.74e-41 148
Msa1334420 MtrunA17_Chr6g0470971 49.007 151 66 4 7 146 9 159 3.61e-40 141
Msa1334420 MtrunA17_Chr1g0203441 54.701 117 52 1 1 116 1 117 3.24e-39 139
Msa1334420 MtrunA17_Chr3g0099131 57.547 106 45 0 12 117 41 146 3.65e-39 144
Msa1334420 MtrunA17_Chr4g0068921 61.468 109 42 0 12 120 24 132 2.31e-38 134
Msa1334420 MtrunA17_Chr1g0192411 55.660 106 47 0 12 117 12 117 3.37e-38 139
Msa1334420 MtrunA17_Chr8g0354661 57.692 104 44 0 12 115 37 140 3.64e-38 141
Msa1334420 MtrunA17_Chr2g0293911 61.468 109 42 0 12 120 24 132 4.72e-38 137
Msa1334420 MtrunA17_Chr2g0322521 56.364 110 48 0 8 117 25 134 1.24e-37 137
Msa1334420 MtrunA17_Chr1g0154031 56.731 104 45 0 12 115 76 179 5.36e-37 136
Msa1334420 MtrunA17_Chr1g0180391 57.798 109 46 0 12 120 19 127 6.80e-37 131
Msa1334420 MtrunA17_Chr4g0042611 64.773 88 31 0 1 88 1 88 3.57e-36 125
Msa1334420 MtrunA17_Chr2g0327821 49.167 120 61 0 8 127 2 121 1.92e-35 128
Msa1334420 MtrunA17_Chr7g0247131 69.737 76 23 0 44 119 10 85 3.55e-34 125
Msa1334420 MtrunA17_Chr4g0030881 50.862 116 50 1 7 115 2 117 8.13e-34 124
Msa1334420 MtrunA17_Chr5g0395221 60.227 88 35 0 1 88 1 88 8.40e-34 119
Msa1334420 MtrunA17_Chr2g0323321 60.870 92 35 1 1 92 1 91 3.36e-33 118
Msa1334420 MtrunA17_Chr8g0342461 54.444 90 40 1 1 89 1 90 4.55e-31 113
Msa1334420 MtrunA17_Chr8g0342511 55.172 87 39 0 1 87 1 87 1.07e-30 111
Msa1334420 MtrunA17_Chr5g0434901 55.769 104 45 1 46 149 7 109 1.21e-30 112
Msa1334420 MtrunA17_Chr7g0229101 75.362 69 17 0 44 112 4 72 1.35e-30 114
Msa1334420 MtrunA17_Chr8g0342471 54.444 90 40 1 1 89 1 90 1.61e-30 112
Msa1334420 MtrunA17_Chr8g0342531 53.933 89 41 0 1 89 1 89 2.88e-30 112
Msa1334420 MtrunA17_Chr7g0229131 60.465 86 34 0 44 129 4 89 1.94e-29 110
Msa1334420 MtrunA17_Chr5g0440781 48.980 98 49 1 14 110 14 111 2.65e-29 110
Msa1334420 MtrunA17_Chr5g0440761 48.980 98 49 1 14 110 14 111 8.84e-29 111
Msa1334420 MtrunA17_Chr5g0441141 48.980 98 49 1 14 110 14 111 1.22e-28 111
Msa1334420 MtrunA17_Chr3g0099141 54.217 83 38 0 12 94 40 122 1.27e-27 104
Msa1334420 MtrunA17_Chr5g0441131 48.980 98 49 1 14 110 11 108 1.34e-27 105
Msa1334420 MtrunA17_Chr8g0334881 43.689 103 57 1 9 110 7 109 1.76e-26 106
Msa1334420 MtrunA17_Chr5g0429661 36.047 172 92 4 10 177 118 275 9.25e-26 105
Msa1334420 MtrunA17_Chr3g0117511 45.614 114 51 3 3 110 170 278 4.44e-25 104
Msa1334420 MtrunA17_Chr4g0013361 44.000 100 55 1 12 110 10 109 7.42e-25 101
Msa1334420 MtrunA17_Chr3g0133601 47.573 103 53 1 14 116 37 138 1.24e-24 99.4
Msa1334420 MtrunA17_Chr4g0058991 47.959 98 48 2 14 110 209 304 2.33e-24 102
Msa1334420 MtrunA17_Chr5g0417621 33.523 176 107 4 2 177 127 292 2.66e-24 102
Msa1334420 MtrunA17_Chr4g0008551 34.637 179 99 5 14 186 38 204 3.23e-24 100
Msa1334420 MtrunA17_Chr4g0042501 41.880 117 62 2 2 118 98 208 3.24e-24 101
Msa1334420 MtrunA17_Chr5g0401731 41.593 113 65 1 14 126 15 126 1.35e-23 98.6
Msa1334420 MtrunA17_Chr6g0454921 43.396 106 59 1 14 119 15 119 2.49e-23 95.5
Msa1334420 MtrunA17_Chr4g0053431 46.078 102 54 1 14 115 5 105 2.64e-23 96.7
Msa1334420 MtrunA17_Chr7g0228531 32.287 223 116 7 14 221 220 422 4.07e-23 98.6
Msa1334420 MtrunA17_Chr6g0480581 43.137 102 55 2 14 114 4 103 2.04e-22 93.6
Msa1334420 MtrunA17_Chr7g0238631 44.762 105 57 1 12 116 111 214 4.45e-22 96.3
Msa1334420 MtrunA17_Chr6g0460661 37.398 123 71 2 13 135 15 131 1.06e-21 89.7
Msa1334420 MtrunA17_Chr3g0093811 52.632 76 36 0 44 119 14 89 1.40e-21 92.0
Msa1334420 MtrunA17_Chr3g0139671 35.417 144 83 2 12 155 83 216 1.43e-21 95.1
Msa1334420 MtrunA17_Chr5g0425591 48.148 81 41 1 14 93 11 91 1.85e-21 87.0
Msa1334420 MtrunA17_Chr1g0157731 34.459 148 86 3 12 158 89 226 3.00e-21 94.4
Msa1334420 MtrunA17_Chr3g0125801 40.000 105 62 1 14 118 16 119 1.32e-19 87.0
Msa1334420 MtrunA17_Chr7g0238651 38.462 117 65 2 13 127 6 117 1.34e-19 87.8
Msa1334420 MtrunA17_Chr7g0228481 29.825 228 123 8 14 226 220 425 1.87e-19 88.2
Msa1334420 MtrunA17_Chr6g0460671 41.509 106 61 1 14 119 99 203 2.15e-19 87.4
Msa1334420 MtrunA17_Chr5g0437321 42.424 99 56 1 14 112 19 116 2.95e-19 85.9
Msa1334420 MtrunA17_Chr7g0254261 40.000 115 63 2 1 115 81 189 3.93e-19 86.7
Msa1334420 MtrunA17_Chr7g0228401 47.674 86 44 1 25 110 290 374 9.69e-19 86.3
Msa1334420 MtrunA17_Chr5g0397841 41.837 98 56 1 12 109 108 204 1.43e-18 85.9
Msa1334420 MtrunA17_Chr1g0177901 45.977 87 46 1 24 110 4 89 2.30e-18 82.0
Msa1334420 MtrunA17_Chr6g0453751 44.565 92 42 2 11 93 19 110 7.65e-18 78.6
Msa1334420 MtrunA17_Chr7g0233061 38.793 116 59 4 14 123 180 289 3.22e-17 81.3
Msa1334420 MtrunA17_Chr5g0416341 38.614 101 61 1 17 117 29 128 3.89e-17 81.6
Msa1334420 MtrunA17_Chr5g0434871 74.419 43 11 0 74 116 2 44 6.30e-17 73.9
Msa1334420 MtrunA17_Chr2g0322831 78.947 38 8 0 71 108 35 72 5.81e-16 71.6
Msa1334420 MtrunA17_Chr8g0362231 36.842 95 59 1 16 110 24 117 8.98e-15 74.3
Msa1334420 MtrunA17_Chr7g0247141 57.447 47 19 1 1 46 1 47 2.04e-14 67.0
Msa1334420 MtrunA17_Chr1g0193901 50.000 58 28 1 12 68 11 68 4.43e-14 67.4
Msa1334420 MtrunA17_Chr1g0193891 50.000 58 28 1 12 68 11 68 4.43e-14 67.4
Msa1334420 MtrunA17_Chr1g0193871 50.000 58 28 1 12 68 11 68 4.43e-14 67.4
Msa1334420 MtrunA17_Chr1g0193881 50.000 58 28 1 12 68 11 68 4.43e-14 67.4
Msa1334420 MtrunA17_Chr5g0434891 35.821 134 73 3 77 209 1 122 9.88e-14 67.4
Msa1334420 MtrunA17_Chr4g0024181 58.537 41 17 0 70 110 28 68 1.90e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334420 AT5G35550.1 48.837 258 102 5 9 261 11 243 3.19e-68 213
Msa1334420 AT3G13540.1 74.336 113 29 0 4 116 15 127 1.90e-60 193
Msa1334420 AT1G22640.1 70.690 116 34 0 1 116 1 116 2.61e-60 193
Msa1334420 AT4G09460.1 46.725 229 98 5 1 229 1 205 2.82e-60 192
Msa1334420 AT2G47460.1 56.863 153 66 0 1 153 1 153 1.01e-59 195
Msa1334420 AT2G16720.1 71.552 116 33 0 1 116 1 116 1.69e-59 191
Msa1334420 AT5G49330.1 71.552 116 33 0 1 116 1 116 2.51e-59 193
Msa1334420 AT4G38620.1 61.111 144 53 1 1 144 1 141 5.93e-59 191
Msa1334420 AT1G35515.1 56.954 151 62 1 1 148 1 151 2.69e-58 186
Msa1334420 AT3G23250.1 58.741 143 51 1 1 143 1 135 1.33e-57 187
Msa1334420 AT4G34990.1 70.690 116 34 0 1 116 1 116 2.62e-57 186
Msa1334420 AT4G28110.1 67.241 116 38 0 1 116 1 116 3.12e-57 186
Msa1334420 AT1G06180.1 67.480 123 40 0 1 123 1 123 3.52e-57 185
Msa1334420 AT3G62610.1 62.121 132 50 0 1 132 1 132 4.83e-57 187
Msa1334420 AT4G21440.1 68.103 116 37 0 1 116 1 116 1.84e-56 186
Msa1334420 AT5G16770.4 69.828 116 35 0 1 116 1 116 3.59e-56 184
Msa1334420 AT5G16770.3 69.828 116 35 0 1 116 1 116 3.59e-56 184
Msa1334420 AT5G16770.1 69.828 116 35 0 1 116 1 116 5.90e-56 184
Msa1334420 AT5G16770.2 69.828 116 35 0 1 116 1 116 5.90e-56 184
Msa1334420 AT3G02940.2 68.103 116 37 0 1 116 1 116 6.34e-56 184
Msa1334420 AT3G02940.1 68.103 116 37 0 1 116 1 116 1.22e-55 183
Msa1334420 AT3G02940.3 68.103 116 37 0 1 116 1 116 1.22e-55 183
Msa1334420 AT4G05100.1 67.521 117 37 1 1 116 1 117 1.39e-55 183
Msa1334420 AT5G60890.1 66.667 117 39 0 1 117 1 117 4.08e-55 181
Msa1334420 AT5G14750.1 62.595 131 45 2 14 144 18 144 3.97e-54 176
Msa1334420 AT2G31180.1 66.379 116 39 0 1 116 1 116 1.39e-53 176
Msa1334420 AT3G61250.1 65.517 116 40 0 1 116 1 116 1.41e-53 177
Msa1334420 AT5G15310.1 42.308 234 121 4 1 225 1 229 2.12e-53 177
Msa1334420 AT5G07690.1 65.254 118 41 0 1 118 1 118 2.42e-53 177
Msa1334420 AT5G15310.2 44.444 225 118 5 1 225 1 218 2.64e-53 177
Msa1334420 AT5G61420.2 50.000 186 77 5 1 180 1 176 4.03e-53 178
Msa1334420 AT3G01140.2 67.241 116 38 0 1 116 1 116 5.54e-53 177
Msa1334420 AT5G15310.4 67.241 116 38 0 1 116 1 116 5.93e-53 174
Msa1334420 AT1G34670.1 65.517 116 40 0 1 116 1 116 9.60e-52 174
Msa1334420 AT1G74080.1 66.667 114 38 0 1 114 1 114 1.68e-51 173
Msa1334420 AT1G18570.1 56.552 145 57 2 1 139 1 145 3.41e-51 172
Msa1334420 AT5G40330.1 68.932 103 32 0 14 116 14 116 7.22e-51 167
Msa1334420 AT5G26660.1 64.103 117 42 0 1 117 1 117 8.18e-51 171
Msa1334420 AT5G62470.2 54.795 146 57 1 1 137 1 146 1.09e-50 171
Msa1334420 AT5G10280.1 65.517 116 40 0 1 116 1 116 1.17e-50 171
Msa1334420 AT5G07700.1 44.792 192 84 3 1 182 1 180 1.31e-50 171
Msa1334420 AT5G07700.2 44.792 192 84 3 1 182 1 180 1.31e-50 171
Msa1334420 AT4G17785.1 64.957 117 40 1 1 116 1 117 1.32e-50 171
Msa1334420 AT4G17785.2 64.957 117 40 1 1 116 1 117 1.44e-50 171
Msa1334420 AT4G12350.1 64.167 120 43 0 1 120 1 120 4.87e-50 167
Msa1334420 AT5G52600.1 62.903 124 43 1 6 126 3 126 6.56e-50 164
Msa1334420 AT3G01140.1 66.372 113 38 0 4 116 47 159 7.16e-50 170
Msa1334420 AT5G56110.1 61.345 119 46 0 1 119 1 119 8.96e-50 168
Msa1334420 AT3G47600.1 61.345 119 46 0 1 119 1 119 9.25e-50 168
Msa1334420 AT4G22680.1 65.517 116 40 0 1 116 1 116 1.05e-49 166
Msa1334420 AT1G16490.1 51.020 147 70 1 2 148 4 148 2.03e-49 166
Msa1334420 AT4G01680.3 62.393 117 44 0 1 117 1 117 4.93e-49 164
Msa1334420 AT1G56160.1 62.609 115 43 0 2 116 4 118 9.24e-49 164
Msa1334420 AT1G09540.1 61.538 117 45 0 1 117 1 117 1.13e-48 166
Msa1334420 AT5G65230.1 62.069 116 44 0 1 116 1 116 1.26e-48 165
Msa1334420 AT4G01680.1 62.393 117 44 0 1 117 1 117 1.35e-48 165
Msa1334420 AT1G57560.1 61.207 116 45 0 1 116 1 116 1.36e-48 165
Msa1334420 AT1G57560.2 61.207 116 45 0 1 116 1 116 1.71e-48 163
Msa1334420 AT5G54230.1 63.793 116 42 0 1 116 1 116 2.77e-48 164
Msa1334420 AT5G62470.1 54.110 146 57 2 1 137 1 145 4.10e-48 164
Msa1334420 AT1G74650.1 59.350 123 50 0 1 123 1 123 5.82e-48 164
Msa1334420 AT1G66370.1 65.217 115 36 1 1 115 1 111 7.31e-48 160
Msa1334420 AT3G27920.1 66.019 103 35 0 14 116 16 118 7.63e-48 160
Msa1334420 AT1G66230.1 60.504 119 47 0 1 119 1 119 1.17e-47 161
Msa1334420 AT1G08810.1 43.878 196 103 4 1 193 1 192 1.91e-47 160
Msa1334420 AT5G35550.2 45.495 222 91 5 45 261 50 246 4.92e-47 159
Msa1334420 AT1G63910.1 58.120 117 49 0 1 117 1 117 6.87e-47 162
Msa1334420 AT5G16600.1 50.649 154 64 1 1 142 1 154 7.49e-47 160
Msa1334420 AT3G13890.2 57.759 116 49 0 1 116 1 116 1.01e-46 161
Msa1334420 AT3G28910.1 58.678 121 50 0 1 121 1 121 1.69e-46 159
Msa1334420 AT1G79180.1 59.130 115 47 0 2 116 4 118 3.53e-46 158
Msa1334420 AT4G37780.1 55.556 117 51 1 1 116 1 117 9.77e-46 157
Msa1334420 AT5G65790.1 51.079 139 67 1 1 138 1 139 1.25e-45 159
Msa1334420 AT5G14340.1 61.345 119 46 0 1 119 13 131 1.40e-45 155
Msa1334420 AT5G57620.1 56.098 123 53 1 1 122 1 123 2.36e-45 157
Msa1334420 AT3G28470.1 59.091 110 45 0 1 110 1 110 2.44e-45 156
Msa1334420 AT4G01680.2 56.589 129 44 1 1 117 1 129 3.21e-45 157
Msa1334420 AT5G23000.1 58.974 117 47 1 1 116 1 117 3.41e-45 156
Msa1334420 AT3G24310.1 62.727 110 41 0 8 117 14 123 4.00e-45 154
Msa1334420 AT3G49690.1 55.285 123 54 1 1 122 1 123 1.03e-44 154
Msa1334420 AT1G74430.1 59.483 116 47 0 1 116 1 116 1.11e-44 153
Msa1334420 AT5G62320.1 49.020 153 67 2 2 143 3 155 3.85e-44 151
Msa1334420 AT3G12720.1 54.955 111 50 0 6 116 16 126 6.85e-44 152
Msa1334420 AT3G13890.1 53.600 125 49 1 1 116 1 125 1.04e-43 153
Msa1334420 AT2G36890.1 57.265 117 49 1 1 116 1 117 1.10e-43 151
Msa1334420 AT2G36890.2 57.265 117 49 1 1 116 42 158 1.52e-43 152
Msa1334420 AT5G12870.1 60.185 108 43 0 12 119 18 125 1.98e-43 150
Msa1334420 AT4G13480.1 53.030 132 58 1 8 139 2 129 2.43e-43 149
Msa1334420 AT3G12820.1 57.895 114 48 0 3 116 5 118 3.58e-43 148
Msa1334420 AT1G66380.1 70.755 106 31 0 10 115 6 111 1.06e-42 144
Msa1334420 AT2G47190.1 56.881 109 47 0 12 120 20 128 1.40e-42 148
Msa1334420 AT3G01530.1 60.377 106 42 0 12 117 25 130 2.23e-42 145
Msa1334420 AT3G27810.1 55.462 119 53 0 8 126 16 134 3.11e-42 145
Msa1334420 AT1G56650.1 67.593 108 35 0 8 115 4 111 7.49e-42 145
Msa1334420 AT1G18710.1 55.172 116 52 0 1 116 1 116 1.21e-41 145
Msa1334420 AT1G48000.1 61.468 109 42 0 12 120 32 140 1.88e-41 144
Msa1334420 AT3G30210.1 58.407 113 47 0 11 123 26 138 2.33e-41 145
Msa1334420 AT1G68320.1 59.091 110 45 0 10 119 17 126 3.06e-41 145
Msa1334420 AT5G40350.1 60.000 105 42 0 12 116 17 121 3.81e-41 142
Msa1334420 AT1G66390.1 68.519 108 34 0 8 115 4 111 4.46e-41 143
Msa1334420 AT3G08500.1 60.550 109 43 0 9 117 27 135 4.96e-41 145
Msa1334420 AT2G32460.1 57.944 107 45 0 11 117 17 123 1.18e-40 148
Msa1334420 AT2G32460.2 57.944 107 45 0 11 117 5 111 1.25e-40 147
Msa1334420 AT5G55020.1 58.879 107 44 0 12 118 26 132 1.40e-40 148
Msa1334420 AT1G79180.2 45.946 148 47 1 2 116 4 151 1.39e-39 141
Msa1334420 AT1G25340.1 52.846 123 55 1 14 136 20 139 2.36e-39 140
Msa1334420 AT3G11440.2 56.604 106 46 0 12 117 41 146 3.73e-39 143
Msa1334420 AT5G06100.1 56.075 107 47 0 11 117 31 137 5.28e-39 142
Msa1334420 AT5G14750.3 63.810 105 31 3 40 144 13 110 1.27e-38 134
Msa1334420 AT4G26930.1 48.819 127 61 1 12 138 19 141 1.87e-38 140
Msa1334420 AT3G11440.3 56.604 106 46 0 12 117 41 146 2.27e-38 142
Msa1334420 AT3G11440.4 56.604 106 46 0 12 117 41 146 2.27e-38 142
Msa1334420 AT3G11440.1 56.604 106 46 0 12 117 41 146 2.27e-38 142
Msa1334420 AT5G06100.5 56.075 107 47 0 11 117 31 137 2.80e-38 142
Msa1334420 AT5G06100.2 56.075 107 47 0 11 117 31 137 2.80e-38 142
Msa1334420 AT5G06100.3 56.075 107 47 0 11 117 31 137 2.80e-38 142
Msa1334420 AT5G06100.4 56.075 107 47 0 11 117 31 137 2.80e-38 142
Msa1334420 AT3G06490.1 61.468 109 42 0 12 120 19 127 2.41e-37 135
Msa1334420 AT2G26960.1 54.717 106 48 0 9 114 17 122 1.68e-36 135
Msa1334420 AT3G46130.1 53.636 110 51 0 9 118 6 115 3.14e-36 131
Msa1334420 AT5G49620.1 59.633 109 44 0 12 120 26 134 4.21e-36 132
Msa1334420 AT3G48920.1 50.427 117 58 0 8 124 14 130 7.08e-36 130
Msa1334420 AT5G59780.3 52.252 111 53 0 8 118 4 114 1.01e-35 129
Msa1334420 AT3G53200.1 57.009 107 46 0 9 115 6 112 1.59e-35 128
Msa1334420 AT4G25560.1 54.902 102 46 0 14 115 12 113 9.20e-35 127
Msa1334420 AT1G25340.2 50.407 123 53 2 14 136 20 134 1.98e-34 127
Msa1334420 AT1G25340.3 50.407 123 53 2 14 136 20 134 3.73e-34 127
Msa1334420 AT5G26660.2 73.333 75 20 0 43 117 12 86 6.10e-34 126
Msa1334420 AT5G52260.1 50.000 122 61 0 1 122 1 122 9.95e-33 122
Msa1334420 AT5G49620.2 52.846 123 44 1 12 120 26 148 1.78e-32 122
Msa1334420 AT2G26950.1 45.714 105 57 0 6 110 10 114 5.99e-31 120
Msa1334420 AT3G27810.2 60.976 82 32 0 45 126 4 85 2.65e-30 113
Msa1334420 AT3G47600.2 68.000 75 24 0 45 119 39 113 1.28e-29 115
Msa1334420 AT5G40350.2 65.278 72 25 0 45 116 5 76 9.80e-29 108
Msa1334420 AT3G53200.2 67.123 73 24 0 43 115 7 79 1.29e-28 109
Msa1334420 AT3G12820.2 68.116 69 22 0 48 116 2 70 1.61e-28 108
Msa1334420 AT5G14750.4 60.920 87 30 2 58 144 1 83 2.29e-28 107
Msa1334420 AT5G14750.2 60.920 87 30 2 58 144 1 83 2.29e-28 107
Msa1334420 AT1G66380.3 79.167 72 15 0 44 115 7 78 2.59e-28 105
Msa1334420 AT3G60460.1 47.573 103 53 1 9 110 8 110 3.55e-28 110
Msa1334420 AT5G59780.2 60.000 85 32 1 34 118 11 93 7.51e-28 107
Msa1334420 AT3G46130.4 52.632 95 41 1 24 118 3 93 3.05e-27 107
Msa1334420 AT3G46130.3 61.333 75 29 0 44 118 9 83 6.80e-27 105
Msa1334420 AT3G27785.1 49.020 102 51 1 9 110 184 284 1.53e-26 108
Msa1334420 AT1G66380.2 63.529 85 31 0 8 92 4 88 2.02e-26 100
Msa1334420 AT3G23250.2 54.651 86 31 1 58 143 1 78 9.86e-26 102
Msa1334420 AT1G22640.3 72.881 59 16 0 58 116 1 59 1.07e-25 101
Msa1334420 AT4G18770.1 42.623 122 66 2 9 130 212 329 1.10e-25 106
Msa1334420 AT5G40360.1 39.024 123 73 2 9 131 153 273 1.38e-25 105
Msa1334420 AT1G71030.2 60.000 75 30 0 51 125 5 79 4.03e-25 99.8
Msa1334420 AT1G71030.1 60.000 75 30 0 51 125 19 93 5.08e-25 99.8
Msa1334420 AT2G39880.1 50.000 102 50 1 14 115 50 150 1.02e-24 102
Msa1334420 AT1G69560.2 36.429 140 85 2 8 147 117 252 1.19e-24 102
Msa1334420 AT1G69560.1 36.429 140 85 2 8 147 101 236 1.19e-24 102
Msa1334420 AT3G55730.1 40.299 134 73 2 14 141 56 188 5.96e-24 100
Msa1334420 AT5G58850.1 47.475 99 51 1 12 110 103 200 6.43e-24 101
Msa1334420 AT1G26780.2 32.579 221 125 7 12 217 96 307 1.13e-23 99.8
Msa1334420 AT1G26780.1 39.231 130 70 3 12 141 96 216 1.71e-23 97.8
Msa1334420 AT3G09230.1 42.857 112 55 2 14 121 55 161 2.11e-23 99.4
Msa1334420 AT5G11050.1 47.423 97 50 1 14 110 105 200 4.84e-23 98.6
Msa1334420 AT5G02320.1 43.396 106 59 1 12 117 125 229 2.78e-22 97.4
Msa1334420 AT5G02320.2 43.396 106 59 1 12 117 125 229 2.78e-22 97.4
Msa1334420 AT1G18960.1 41.176 119 63 4 1 119 1 112 4.71e-22 94.4
Msa1334420 AT5G02320.3 43.396 106 59 1 12 117 65 169 5.98e-22 96.3
Msa1334420 AT2G23290.1 44.118 102 56 1 14 115 13 113 8.76e-22 93.6
Msa1334420 AT2G25230.1 42.056 107 61 1 4 110 16 121 1.37e-21 91.7
Msa1334420 AT5G17800.1 39.167 120 67 2 8 122 82 200 1.67e-21 93.2
Msa1334420 AT3G09370.2 43.519 108 52 2 12 115 133 235 1.96e-21 94.7
Msa1334420 AT4G37260.1 44.118 102 56 1 14 115 13 113 1.96e-21 92.8
Msa1334420 AT3G09370.1 43.519 108 52 2 12 115 128 230 2.02e-21 94.7
Msa1334420 AT1G17950.1 40.000 105 62 1 14 118 5 108 2.30e-21 91.3
Msa1334420 AT3G09370.3 43.519 108 52 2 12 115 141 243 2.47e-21 94.4
Msa1334420 AT5G11510.3 40.952 105 61 1 12 116 79 182 2.62e-21 94.7
Msa1334420 AT5G11510.1 40.952 105 61 1 12 116 79 182 2.62e-21 94.7
Msa1334420 AT5G11510.4 40.952 105 61 1 12 116 79 182 2.62e-21 94.7
Msa1334420 AT5G11510.2 40.952 105 61 1 12 116 79 182 3.51e-21 94.4
Msa1334420 AT5G11510.5 40.952 105 61 1 12 116 79 182 3.74e-21 94.4
Msa1334420 AT1G73410.1 42.857 105 57 2 14 117 6 108 1.63e-20 89.0
Msa1334420 AT3G29020.1 38.095 105 64 1 14 118 65 168 1.67e-20 88.6
Msa1334420 AT3G29020.2 38.095 105 64 1 13 117 66 169 1.79e-20 90.1
Msa1334420 AT4G32730.5 40.000 105 62 1 12 116 85 188 1.84e-20 92.4
Msa1334420 AT4G32730.4 40.000 105 62 1 12 116 85 188 1.84e-20 92.4
Msa1334420 AT4G32730.3 40.000 105 62 1 12 116 85 188 1.84e-20 92.4
Msa1334420 AT4G32730.2 40.000 105 62 1 12 116 85 188 1.84e-20 92.4
Msa1334420 AT4G32730.1 40.000 105 62 1 12 116 85 188 2.24e-20 92.0
Msa1334420 AT1G73410.2 42.453 106 58 2 13 117 5 108 5.14e-20 86.7
Msa1334420 AT5G67300.1 38.596 114 69 1 14 127 6 118 1.39e-19 87.4
Msa1334420 AT4G33450.1 36.207 116 68 2 3 118 13 122 3.16e-19 85.5
Msa1334420 AT3G50060.1 40.196 102 60 1 14 115 6 106 5.93e-19 85.9
Msa1334420 AT2G37630.1 36.607 112 69 1 14 123 4 115 3.04e-18 84.3
Msa1334420 AT4G00540.2 38.739 111 64 2 12 119 101 210 1.86e-17 82.4
Msa1334420 AT4G00540.1 38.739 111 64 2 12 119 99 208 3.53e-17 82.0
Msa1334420 AT5G40430.1 37.383 107 65 2 4 110 44 148 3.67e-17 80.1
Msa1334420 AT1G14350.2 37.255 102 63 1 16 117 27 127 3.58e-16 79.0
Msa1334420 AT1G14350.1 37.255 102 63 1 16 117 27 127 3.58e-16 79.0
Msa1334420 AT5G39700.1 35.922 103 65 1 15 117 57 158 4.11e-16 75.5
Msa1334420 AT2G02820.2 37.255 102 63 1 16 117 32 132 8.69e-16 77.8
Msa1334420 AT2G02820.1 37.255 102 63 1 16 117 32 132 9.36e-16 77.8
Msa1334420 AT2G02820.3 37.255 102 63 1 16 117 32 132 1.00e-15 77.0
Msa1334420 AT4G01060.1 62.500 40 15 0 69 108 34 73 2.47e-13 64.7
Msa1334420 AT4G01060.2 62.500 40 15 0 69 108 31 70 2.63e-13 64.7
Msa1334420 AT4G25560.2 63.043 46 17 0 70 115 2 47 4.54e-13 67.8
Msa1334420 AT5G59780.1 57.143 49 21 0 70 118 1 49 1.33e-12 65.5
Msa1334420 AT3G46130.2 57.143 49 21 0 70 118 1 49 1.49e-12 65.9
Msa1334420 AT5G53200.1 46.154 65 34 1 69 133 32 95 1.90e-12 63.2
Msa1334420 AT4G01060.3 62.500 40 15 0 69 108 32 71 2.78e-12 62.0
Msa1334420 AT1G74650.3 61.702 47 18 0 77 123 1 47 1.05e-11 64.3
Msa1334420 AT2G46410.1 64.103 39 14 0 70 108 38 76 1.91e-11 60.1
Msa1334420 AT3G28910.2 60.000 45 18 0 77 121 1 45 2.47e-11 63.2
Msa1334420 AT1G01380.1 58.974 39 16 0 70 108 34 72 6.92e-11 58.2

Find 50 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTATTGGAACACGAATTT+AGG 0.196974 8_4:-54833018 Msa1334420:CDS
AATTAATGAACCTGCTCTTT+TGG 0.204304 8_4:+54833514 None:intergenic
CGGATGAGATTCTCAAGAAT+TGG 0.303221 8_4:-54832528 Msa1334420:CDS
ACAATGAAATCAAGAATTAT+TGG 0.309694 8_4:-54833032 Msa1334420:CDS
TTCTGCATTGTTGATGAGTT+AGG 0.310840 8_4:+54832832 None:intergenic
ATTCATTACCATTCTCCATT+TGG 0.340725 8_4:+54832725 None:intergenic
GAGTTTGGCACCGTTGGTTT+AGG 0.340733 8_4:+54832913 None:intergenic
AGCTCCATGGTGAAGGAAAA+TGG 0.341987 8_4:-54833547 Msa1334420:CDS
GTGAAATAATGAAGGTTGTT+AGG 0.357974 8_4:+54832472 None:intergenic
AGAACTATCCACAGATTTGC+TGG 0.360737 8_4:-54832677 Msa1334420:CDS
GTACGAACAACATGTGAGTT+TGG 0.378479 8_4:+54832898 None:intergenic
ATGTTGCCTCTCTTAATATC+TGG 0.404068 8_4:+54833294 None:intergenic
TTCACAAACTACTTGGAAAC+AGG 0.414704 8_4:-54833239 Msa1334420:intron
AAAGGCTATCAAGTGCTCTA+AGG 0.425345 8_4:-54832875 Msa1334420:CDS
TCTGCATTGTTGATGAGTTA+GGG 0.428578 8_4:+54832833 None:intergenic
CTAATAGCCGGAAGACTACC+AGG 0.448475 8_4:-54833063 Msa1334420:CDS
ATCCGACTTCACAAACTACT+TGG 0.462485 8_4:-54833246 Msa1334420:CDS
TGTTCGCCCTGGTAGTCTTC+CGG 0.464681 8_4:+54833056 None:intergenic
TTCAATGAGTAACAACCAAA+TGG 0.478517 8_4:-54832740 Msa1334420:CDS
TTCTCCTAGTACATCCTCAC+TGG 0.484438 8_4:+54832435 None:intergenic
CCACCATCAACATGCATTGG+TGG 0.496315 8_4:+54832772 None:intergenic
TTCCAAGTAGTTTGTGAAGT+CGG 0.507548 8_4:+54833244 None:intergenic
CATCCGAAAACATAGGAGTC+TGG 0.511553 8_4:+54832545 None:intergenic
GCAAAGGAGGGCTTGAATAG+AGG 0.520112 8_4:-54833614 Msa1334420:CDS
ACATGTGAGTTTGGCACCGT+TGG 0.530375 8_4:+54832907 None:intergenic
AGTAACAACCAAATGGAGAA+TGG 0.531482 8_4:-54832733 Msa1334420:CDS
GGTAGATGGTCTCTAATAGC+CGG 0.535801 8_4:-54833075 Msa1334420:intron
ATTTCATTGTCTGTTCGCCC+TGG 0.537868 8_4:+54833045 None:intergenic
GAAAAGAAGTGAAATAATGA+AGG 0.542726 8_4:+54832464 None:intergenic
TACGTTAAGCTCCATGGTGA+AGG 0.542958 8_4:-54833554 Msa1334420:CDS
AAGTCCTTGTTGTGCAAAGG+AGG 0.543543 8_4:-54833627 Msa1334420:CDS
AAGCCACCAATGCATGTTGA+TGG 0.544750 8_4:-54832775 Msa1334420:CDS
AGGGCTTGAATAGAGGTGCT+TGG 0.550771 8_4:-54833607 Msa1334420:CDS
TCAGATTACGTTAAGCTCCA+TGG 0.555400 8_4:-54833560 Msa1334420:CDS
AGAATCTCATCCGAAAACAT+AGG 0.560090 8_4:+54832538 None:intergenic
AAGCCCTCCTTTGCACAACA+AGG 0.570948 8_4:+54833623 None:intergenic
GAATCCAGTGAGGATGTACT+AGG 0.577432 8_4:-54832439 Msa1334420:CDS
AGAAACCTTCCCAAAAGAGC+AGG 0.579750 8_4:-54833524 Msa1334420:intron
CTCACATGTTGTTCGTACAA+AGG 0.580746 8_4:-54832893 Msa1334420:CDS
TCACCACCATCAACATGCAT+TGG 0.589567 8_4:+54832769 None:intergenic
AGTCCTTGTTGTGCAAAGGA+GGG 0.595377 8_4:-54833626 Msa1334420:CDS
GAGAAGTCCTTGTTGTGCAA+AGG 0.595751 8_4:-54833630 Msa1334420:CDS
GATAAGATCTTCTTCATCTG+AGG 0.596454 8_4:+54833269 None:intergenic
AAAATCAACCAGCAAATCTG+TGG 0.611405 8_4:+54832669 None:intergenic
CTAAGACCAGATATTAAGAG+AGG 0.629665 8_4:-54833300 Msa1334420:CDS
ATAGGAGTCTGGTCAGAACA+AGG 0.647339 8_4:+54832556 None:intergenic
CATGCAGGTTTAAGAAGATG+TGG 0.648090 8_4:-54833354 Msa1334420:intron
ACAAAACAATCCTAAACCAA+CGG 0.655150 8_4:-54832923 Msa1334420:CDS
CCACCAATGCATGTTGATGG+TGG 0.679297 8_4:-54832772 Msa1334420:CDS
TAATAGCCGGAAGACTACCA+GGG 0.716144 8_4:-54833062 Msa1334420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATTCTTCAAAATAATT+AGG + chr8_4:54832948-54832967 None:intergenic 10.0%
!! ATAAATTCTTCAAAATAATT+AGG + chr8_4:54832948-54832967 None:intergenic 10.0%
!!! ATATTAATTTACTTTTCTCA+TGG + chr8_4:54832657-54832676 None:intergenic 15.0%
!!! TAATGAATTTTTGTCATTTT+CGG - chr8_4:54833357-54833376 Msa1334420:intron 15.0%
!!! ATATTAATTTACTTTTCTCA+TGG + chr8_4:54832657-54832676 None:intergenic 15.0%
!!! TAATGAATTTTTGTCATTTT+CGG - chr8_4:54833357-54833376 Msa1334420:intron 15.0%
!! ACAATGAAATCAAGAATTAT+TGG - chr8_4:54833035-54833054 Msa1334420:CDS 20.0%
!! ACAATGAAATCAAGAATTAT+TGG - chr8_4:54833035-54833054 Msa1334420:CDS 20.0%
! AATTATTGGAACACGAATTT+AGG - chr8_4:54833049-54833068 Msa1334420:CDS 25.0%
! GAAAAGAAGTGAAATAATGA+AGG + chr8_4:54833606-54833625 None:intergenic 25.0%
! AATTATTGGAACACGAATTT+AGG - chr8_4:54833049-54833068 Msa1334420:CDS 25.0%
! GAAAAGAAGTGAAATAATGA+AGG + chr8_4:54833606-54833625 None:intergenic 25.0%
! ATTAATGAACCTGCTCTTTT+GGG + chr8_4:54832555-54832574 None:intergenic 30.0%
! AATTAATGAACCTGCTCTTT+TGG + chr8_4:54832556-54832575 None:intergenic 30.0%
! CATCAATGAACACTTTTGTT+TGG - chr8_4:54832596-54832615 Msa1334420:CDS 30.0%
GAAAAAGTTGTAGACTTAGA+TGG - chr8_4:54832735-54832754 Msa1334420:CDS 30.0%
!!! AAGTTCTGCCTTGAATTTTT+TGG - chr8_4:54832971-54832990 Msa1334420:CDS 30.0%
ACCATCTACCAAAAAATTCA+AGG + chr8_4:54832982-54833001 None:intergenic 30.0%
GAACACGAATTTAGGAAAAA+AGG - chr8_4:54833057-54833076 Msa1334420:CDS 30.0%
!! AACTGTTAGTGTTTTGTTGT+TGG + chr8_4:54833093-54833112 None:intergenic 30.0%
!!! TGTGTGATCTTTGCATTTTT+TGG + chr8_4:54833121-54833140 None:intergenic 30.0%
ACAAAACAATCCTAAACCAA+CGG - chr8_4:54833144-54833163 Msa1334420:intron 30.0%
TTCAATGAGTAACAACCAAA+TGG - chr8_4:54833327-54833346 Msa1334420:CDS 30.0%
ATTCATTACCATTCTCCATT+TGG + chr8_4:54833345-54833364 None:intergenic 30.0%
GTGAAATAATGAAGGTTGTT+AGG + chr8_4:54833598-54833617 None:intergenic 30.0%
! ATTAATGAACCTGCTCTTTT+GGG + chr8_4:54832555-54832574 None:intergenic 30.0%
! AATTAATGAACCTGCTCTTT+TGG + chr8_4:54832556-54832575 None:intergenic 30.0%
! CATCAATGAACACTTTTGTT+TGG - chr8_4:54832596-54832615 Msa1334420:CDS 30.0%
GAAAAAGTTGTAGACTTAGA+TGG - chr8_4:54832735-54832754 Msa1334420:CDS 30.0%
!!! AAGTTCTGCCTTGAATTTTT+TGG - chr8_4:54832971-54832990 Msa1334420:CDS 30.0%
ACCATCTACCAAAAAATTCA+AGG + chr8_4:54832982-54833001 None:intergenic 30.0%
GAACACGAATTTAGGAAAAA+AGG - chr8_4:54833057-54833076 Msa1334420:CDS 30.0%
!! AACTGTTAGTGTTTTGTTGT+TGG + chr8_4:54833093-54833112 None:intergenic 30.0%
!!! TGTGTGATCTTTGCATTTTT+TGG + chr8_4:54833121-54833140 None:intergenic 30.0%
ACAAAACAATCCTAAACCAA+CGG - chr8_4:54833144-54833163 Msa1334420:intron 30.0%
TTCAATGAGTAACAACCAAA+TGG - chr8_4:54833327-54833346 Msa1334420:CDS 30.0%
ATTCATTACCATTCTCCATT+TGG + chr8_4:54833345-54833364 None:intergenic 30.0%
GTGAAATAATGAAGGTTGTT+AGG + chr8_4:54833598-54833617 None:intergenic 30.0%
TAAATATGTGTATGCCATGC+AGG - chr8_4:54832698-54832717 Msa1334420:CDS 35.0%
CTAAGACCAGATATTAAGAG+AGG - chr8_4:54832767-54832786 Msa1334420:CDS 35.0%
ATGTTGCCTCTCTTAATATC+TGG + chr8_4:54832776-54832795 None:intergenic 35.0%
GATAAGATCTTCTTCATCTG+AGG + chr8_4:54832801-54832820 None:intergenic 35.0%
! TTCCAAGTAGTTTGTGAAGT+CGG + chr8_4:54832826-54832845 None:intergenic 35.0%
TTCACAAACTACTTGGAAAC+AGG - chr8_4:54832828-54832847 Msa1334420:CDS 35.0%
!!! GCCTTGAATTTTTTGGTAGA+TGG - chr8_4:54832978-54832997 Msa1334420:CDS 35.0%
! TCTGCATTGTTGATGAGTTA+GGG + chr8_4:54833237-54833256 None:intergenic 35.0%
! TTCTGCATTGTTGATGAGTT+AGG + chr8_4:54833238-54833257 None:intergenic 35.0%
AGTAACAACCAAATGGAGAA+TGG - chr8_4:54833334-54833353 Msa1334420:CDS 35.0%
AAAATCAACCAGCAAATCTG+TGG + chr8_4:54833401-54833420 None:intergenic 35.0%
!! TGCTGGTTGATTTTAACATG+AGG - chr8_4:54833407-54833426 Msa1334420:intron 35.0%
!! GCTGGTTGATTTTAACATGA+GGG - chr8_4:54833408-54833427 Msa1334420:intron 35.0%
AGAATCTCATCCGAAAACAT+AGG + chr8_4:54833532-54833551 None:intergenic 35.0%
TAAATATGTGTATGCCATGC+AGG - chr8_4:54832698-54832717 Msa1334420:CDS 35.0%
CTAAGACCAGATATTAAGAG+AGG - chr8_4:54832767-54832786 Msa1334420:CDS 35.0%
ATGTTGCCTCTCTTAATATC+TGG + chr8_4:54832776-54832795 None:intergenic 35.0%
GATAAGATCTTCTTCATCTG+AGG + chr8_4:54832801-54832820 None:intergenic 35.0%
! TTCCAAGTAGTTTGTGAAGT+CGG + chr8_4:54832826-54832845 None:intergenic 35.0%
TTCACAAACTACTTGGAAAC+AGG - chr8_4:54832828-54832847 Msa1334420:CDS 35.0%
!!! GCCTTGAATTTTTTGGTAGA+TGG - chr8_4:54832978-54832997 Msa1334420:CDS 35.0%
! TCTGCATTGTTGATGAGTTA+GGG + chr8_4:54833237-54833256 None:intergenic 35.0%
! TTCTGCATTGTTGATGAGTT+AGG + chr8_4:54833238-54833257 None:intergenic 35.0%
AGTAACAACCAAATGGAGAA+TGG - chr8_4:54833334-54833353 Msa1334420:CDS 35.0%
AAAATCAACCAGCAAATCTG+TGG + chr8_4:54833401-54833420 None:intergenic 35.0%
!! TGCTGGTTGATTTTAACATG+AGG - chr8_4:54833407-54833426 Msa1334420:intron 35.0%
!! GCTGGTTGATTTTAACATGA+GGG - chr8_4:54833408-54833427 Msa1334420:intron 35.0%
AGAATCTCATCCGAAAACAT+AGG + chr8_4:54833532-54833551 None:intergenic 35.0%
TCAGATTACGTTAAGCTCCA+TGG - chr8_4:54832507-54832526 Msa1334420:CDS 40.0%
! TTCTCCATTTTCCTTCACCA+TGG + chr8_4:54832527-54832546 None:intergenic 40.0%
CACATCTTCTTAAACCTGCA+TGG + chr8_4:54832715-54832734 None:intergenic 40.0%
CATGCAGGTTTAAGAAGATG+TGG - chr8_4:54832713-54832732 Msa1334420:CDS 40.0%
ATCCGACTTCACAAACTACT+TGG - chr8_4:54832821-54832840 Msa1334420:CDS 40.0%
GTACGAACAACATGTGAGTT+TGG + chr8_4:54833172-54833191 None:intergenic 40.0%
CTCACATGTTGTTCGTACAA+AGG - chr8_4:54833174-54833193 Msa1334420:intron 40.0%
AAAGGCTATCAAGTGCTCTA+AGG - chr8_4:54833192-54833211 Msa1334420:intron 40.0%
AGAACTATCCACAGATTTGC+TGG - chr8_4:54833390-54833409 Msa1334420:intron 40.0%
! TGACCAGACTCCTATGTTTT+CGG - chr8_4:54833519-54833538 Msa1334420:intron 40.0%
CGGATGAGATTCTCAAGAAT+TGG - chr8_4:54833539-54833558 Msa1334420:CDS 40.0%
! TTCTTTTCTCGAATCCAGTG+AGG - chr8_4:54833618-54833637 Msa1334420:CDS 40.0%
TCAGATTACGTTAAGCTCCA+TGG - chr8_4:54832507-54832526 Msa1334420:CDS 40.0%
! TTCTCCATTTTCCTTCACCA+TGG + chr8_4:54832527-54832546 None:intergenic 40.0%
CACATCTTCTTAAACCTGCA+TGG + chr8_4:54832715-54832734 None:intergenic 40.0%
CATGCAGGTTTAAGAAGATG+TGG - chr8_4:54832713-54832732 Msa1334420:CDS 40.0%
ATCCGACTTCACAAACTACT+TGG - chr8_4:54832821-54832840 Msa1334420:CDS 40.0%
GTACGAACAACATGTGAGTT+TGG + chr8_4:54833172-54833191 None:intergenic 40.0%
CTCACATGTTGTTCGTACAA+AGG - chr8_4:54833174-54833193 Msa1334420:intron 40.0%
AAAGGCTATCAAGTGCTCTA+AGG - chr8_4:54833192-54833211 Msa1334420:intron 40.0%
AGAACTATCCACAGATTTGC+TGG - chr8_4:54833390-54833409 Msa1334420:intron 40.0%
! TGACCAGACTCCTATGTTTT+CGG - chr8_4:54833519-54833538 Msa1334420:intron 40.0%
CGGATGAGATTCTCAAGAAT+TGG - chr8_4:54833539-54833558 Msa1334420:CDS 40.0%
! TTCTTTTCTCGAATCCAGTG+AGG - chr8_4:54833618-54833637 Msa1334420:CDS 40.0%
! GAGAAGTCCTTGTTGTGCAA+AGG - chr8_4:54832437-54832456 Msa1334420:CDS 45.0%
! AAGTCCTTGTTGTGCAAAGG+AGG - chr8_4:54832440-54832459 Msa1334420:CDS 45.0%
! AGTCCTTGTTGTGCAAAGGA+GGG - chr8_4:54832441-54832460 Msa1334420:CDS 45.0%
TACGTTAAGCTCCATGGTGA+AGG - chr8_4:54832513-54832532 Msa1334420:CDS 45.0%
AGCTCCATGGTGAAGGAAAA+TGG - chr8_4:54832520-54832539 Msa1334420:CDS 45.0%
AGAAACCTTCCCAAAAGAGC+AGG - chr8_4:54832543-54832562 Msa1334420:CDS 45.0%
!! ATGAACCTGCTCTTTTGGGA+AGG + chr8_4:54832551-54832570 None:intergenic 45.0%
GGTAGATGGTCTCTAATAGC+CGG - chr8_4:54832992-54833011 Msa1334420:CDS 45.0%
TAATAGCCGGAAGACTACCA+GGG - chr8_4:54833005-54833024 Msa1334420:CDS 45.0%
ATTTCATTGTCTGTTCGCCC+TGG + chr8_4:54833025-54833044 None:intergenic 45.0%
AAGCCACCAATGCATGTTGA+TGG - chr8_4:54833292-54833311 Msa1334420:CDS 45.0%
TCACCACCATCAACATGCAT+TGG + chr8_4:54833301-54833320 None:intergenic 45.0%
ATAGGAGTCTGGTCAGAACA+AGG + chr8_4:54833514-54833533 None:intergenic 45.0%
CATCCGAAAACATAGGAGTC+TGG + chr8_4:54833525-54833544 None:intergenic 45.0%
GAATCCAGTGAGGATGTACT+AGG - chr8_4:54833628-54833647 Msa1334420:CDS 45.0%
TTCTCCTAGTACATCCTCAC+TGG + chr8_4:54833635-54833654 None:intergenic 45.0%
! GAGAAGTCCTTGTTGTGCAA+AGG - chr8_4:54832437-54832456 Msa1334420:CDS 45.0%
! AAGTCCTTGTTGTGCAAAGG+AGG - chr8_4:54832440-54832459 Msa1334420:CDS 45.0%
! AGTCCTTGTTGTGCAAAGGA+GGG - chr8_4:54832441-54832460 Msa1334420:CDS 45.0%
TACGTTAAGCTCCATGGTGA+AGG - chr8_4:54832513-54832532 Msa1334420:CDS 45.0%
AGCTCCATGGTGAAGGAAAA+TGG - chr8_4:54832520-54832539 Msa1334420:CDS 45.0%
AGAAACCTTCCCAAAAGAGC+AGG - chr8_4:54832543-54832562 Msa1334420:CDS 45.0%
!! ATGAACCTGCTCTTTTGGGA+AGG + chr8_4:54832551-54832570 None:intergenic 45.0%
GGTAGATGGTCTCTAATAGC+CGG - chr8_4:54832992-54833011 Msa1334420:CDS 45.0%
TAATAGCCGGAAGACTACCA+GGG - chr8_4:54833005-54833024 Msa1334420:CDS 45.0%
ATTTCATTGTCTGTTCGCCC+TGG + chr8_4:54833025-54833044 None:intergenic 45.0%
AAGCCACCAATGCATGTTGA+TGG - chr8_4:54833292-54833311 Msa1334420:CDS 45.0%
TCACCACCATCAACATGCAT+TGG + chr8_4:54833301-54833320 None:intergenic 45.0%
ATAGGAGTCTGGTCAGAACA+AGG + chr8_4:54833514-54833533 None:intergenic 45.0%
CATCCGAAAACATAGGAGTC+TGG + chr8_4:54833525-54833544 None:intergenic 45.0%
GAATCCAGTGAGGATGTACT+AGG - chr8_4:54833628-54833647 Msa1334420:CDS 45.0%
TTCTCCTAGTACATCCTCAC+TGG + chr8_4:54833635-54833654 None:intergenic 45.0%
!! AGTAAATTAATATATTATTA+TGG - chr8_4:54832664-54832683 Msa1334420:CDS 5.0%
!! AGTAAATTAATATATTATTA+TGG - chr8_4:54832664-54832683 Msa1334420:CDS 5.0%
AAGCCCTCCTTTGCACAACA+AGG + chr8_4:54832447-54832466 None:intergenic 50.0%
GCAAAGGAGGGCTTGAATAG+AGG - chr8_4:54832453-54832472 Msa1334420:CDS 50.0%
!! AGGGCTTGAATAGAGGTGCT+TGG - chr8_4:54832460-54832479 Msa1334420:CDS 50.0%
CTAATAGCCGGAAGACTACC+AGG - chr8_4:54833004-54833023 Msa1334420:CDS 50.0%
!! GAGTTTGGCACCGTTGGTTT+AGG + chr8_4:54833157-54833176 None:intergenic 50.0%
ACATGTGAGTTTGGCACCGT+TGG + chr8_4:54833163-54833182 None:intergenic 50.0%
CCACCATCAACATGCATTGG+TGG + chr8_4:54833298-54833317 None:intergenic 50.0%
! CCACCAATGCATGTTGATGG+TGG - chr8_4:54833295-54833314 Msa1334420:CDS 50.0%
AAGCCCTCCTTTGCACAACA+AGG + chr8_4:54832447-54832466 None:intergenic 50.0%
GCAAAGGAGGGCTTGAATAG+AGG - chr8_4:54832453-54832472 Msa1334420:CDS 50.0%
!! AGGGCTTGAATAGAGGTGCT+TGG - chr8_4:54832460-54832479 Msa1334420:CDS 50.0%
CTAATAGCCGGAAGACTACC+AGG - chr8_4:54833004-54833023 Msa1334420:CDS 50.0%
!! GAGTTTGGCACCGTTGGTTT+AGG + chr8_4:54833157-54833176 None:intergenic 50.0%
ACATGTGAGTTTGGCACCGT+TGG + chr8_4:54833163-54833182 None:intergenic 50.0%
CCACCATCAACATGCATTGG+TGG + chr8_4:54833298-54833317 None:intergenic 50.0%
! CCACCAATGCATGTTGATGG+TGG - chr8_4:54833295-54833314 Msa1334420:CDS 50.0%
TGTTCGCCCTGGTAGTCTTC+CGG + chr8_4:54833014-54833033 None:intergenic 55.0%
TGTTCGCCCTGGTAGTCTTC+CGG + chr8_4:54833014-54833033 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54832432 54833657 54832432 ID=Msa1334420;Name=Msa1334420
chr8_4 mRNA 54832432 54833657 54832432 ID=Msa1334420-mRNA-1;Parent=Msa1334420;Name=Msa1334420-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0|1|1|1|3|0|307
chr8_4 exon 54833525 54833657 54833525 ID=Msa1334420-mRNA-1:exon:17102;Parent=Msa1334420-mRNA-1
chr8_4 exon 54833240 54833369 54833240 ID=Msa1334420-mRNA-1:exon:17101;Parent=Msa1334420-mRNA-1
chr8_4 exon 54832432 54833092 54832432 ID=Msa1334420-mRNA-1:exon:17100;Parent=Msa1334420-mRNA-1
chr8_4 CDS 54833525 54833657 54833525 ID=Msa1334420-mRNA-1:cds;Parent=Msa1334420-mRNA-1
chr8_4 CDS 54833240 54833369 54833240 ID=Msa1334420-mRNA-1:cds;Parent=Msa1334420-mRNA-1
chr8_4 CDS 54832432 54833092 54832432 ID=Msa1334420-mRNA-1:cds;Parent=Msa1334420-mRNA-1
Gene Sequence

>Msa1334420

ATGGGGAGAAGTCCTTGTTGTGCAAAGGAGGGCTTGAATAGAGGTGCTTGGACAGCTCATGAAGACAAAATTCTCTCAGATTACGTTAAGCTCCATGGTGAAGGAAAATGGAGAAACCTTCCCAAAAGAGCAGGTTTAAGAAGATGTGGAAAAAGTTGTAGACTTAGATGGTTAAATTATCTAAGACCAGATATTAAGAGAGGCAACATATCCTCAGATGAAGAAGATCTTATCATCCGACTTCACAAACTACTTGGAAACAGATGGTCTCTAATAGCCGGAAGACTACCAGGGCGAACAGACAATGAAATCAAGAATTATTGGAACACGAATTTAGGAAAAAAGGTTAAAGATCTCCAACAACAAAACACTAACAGTTCTTCTCCAAAAAATGCAAAGATCACACAGAAACAAAACAATCCTAAACCAACGGTGCCAAACTCACATGTTGTTCGTACAAAGGCTATCAAGTGCTCTAAGGTATTATTCATAAACTCACTCCCTAACTCATCAACAATGCAGAATTTGCAGAACAAAGTTGAGACAGAGACAAAAACAAAGCCACCAATGCATGTTGATGGTGGTGATAGTGATTCAATGAGTAACAACCAAATGGAGAATGGTAATGAATTTTTGTCATTTTCGGATGCGAAAAAAGAACTATCCACAGATTTGCTGGTTGATTTTAACATGAGGGATCATGATATTAGCTTATCTGAACTTCTCAACTCAGATTTTTCAACTGCATGCAATTTTGATTACAATGAGCTATTGTCACCTTGTTCTGACCAGACTCCTATGTTTTCGGATGAGATTCTCAAGAATTGGACAGAATGTAGCTTTGCTGATGAGAAAAATGTACCTAACAACCTTCATTATTTCACTTCTTTTCTCGAATCCAGTGAGGATGTACTAGGAGAATGA
Protein sequence

>Msa1334420

MGRSPCCAKEGLNRGAWTAHEDKILSDYVKLHGEGKWRNLPKRAGLRRCGKSCRLRWLNYLRPDIKRGNISSDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKDLQQQNTNSSSPKNAKITQKQNNPKPTVPNSHVVRTKAIKCSKVLFINSLPNSSTMQNLQNKVETETKTKPPMHVDGGDSDSMSNNQMENGNEFLSFSDAKKELSTDLLVDFNMRDHDISLSELLNSDFSTACNFDYNELLSPCSDQTPMFSDEILKNWTECSFADEKNVPNNLHYFTSFLESSEDVLGE*