Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334440 | KEH32456.1 | 86.239 | 218 | 26 | 1 | 14 | 231 | 2 | 215 | 1.24e-122 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334440 | sp|Q9SIP1|UP3_ARATH | 38.991 | 218 | 114 | 6 | 17 | 226 | 48 | 254 | 5.80e-47 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334440 | A0A072USZ1 | 86.239 | 218 | 26 | 1 | 14 | 231 | 2 | 215 | 5.95e-123 | 357 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1228590 | Msa1334440 | 0.801539 | 8.586571e-49 | -8.615850e-47 |
| Msa1266260 | Msa1334440 | 0.881266 | 2.768663e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334440 | MtrunA17_Chr4g0070671 | 86.239 | 218 | 26 | 1 | 14 | 231 | 1 | 214 | 1.45e-126 | 357 |
| Msa1334440 | MtrunA17_Chr4g0070621 | 45.854 | 205 | 99 | 6 | 18 | 218 | 52 | 248 | 1.20e-58 | 186 |
| Msa1334440 | MtrunA17_Chr4g0070651 | 45.854 | 205 | 99 | 6 | 18 | 218 | 52 | 248 | 1.20e-58 | 186 |
| Msa1334440 | MtrunA17_Chr2g0300451 | 38.356 | 219 | 116 | 7 | 18 | 226 | 52 | 261 | 2.23e-44 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334440 | AT2G31670.1 | 38.991 | 218 | 114 | 6 | 17 | 226 | 48 | 254 | 5.89e-48 | 159 |
| Msa1334440 | AT1G51360.1 | 40.930 | 215 | 112 | 5 | 14 | 224 | 1 | 204 | 1.69e-47 | 156 |
Find 58 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGATTCTGATGAGAAATT+TGG | 0.119057 | 8_4:-54842889 | Msa1334440:CDS |
| ACATCCTTTCTTTCTGTTGT+TGG | 0.285441 | 8_4:+54843457 | None:intergenic |
| TCACATGAATGATAAGATTA+AGG | 0.311885 | 8_4:-54842860 | Msa1334440:CDS |
| CTTCAAGTTGAAGGAGGGTT+TGG | 0.321534 | 8_4:-54843070 | Msa1334440:CDS |
| AGAGCCACTTCACTTAACTA+TGG | 0.332780 | 8_4:-54843331 | Msa1334440:CDS |
| CTGATTCTGATGAGAAATTT+GGG | 0.334720 | 8_4:-54842888 | Msa1334440:CDS |
| TCGAGCATGTGGTGTTGTTC+AGG | 0.352637 | 8_4:-54843425 | Msa1334440:CDS |
| TGATAAGATTAAGGAAAATC+TGG | 0.365828 | 8_4:-54842851 | Msa1334440:CDS |
| TCCAGGTTTAACCGAATTGC+AGG | 0.367963 | 8_4:-54842914 | Msa1334440:CDS |
| TTCAAGTTGAAGGAGGGTTT+GGG | 0.376642 | 8_4:-54843069 | Msa1334440:CDS |
| TTCTCTCCTGGTAGAGCTAA+AGG | 0.386910 | 8_4:-54842964 | Msa1334440:CDS |
| ATGAAACCATGGCTCTTGAT+TGG | 0.394542 | 8_4:-54843155 | Msa1334440:CDS |
| ACTGAAAGATGAAAGGGAAT+TGG | 0.400879 | 8_4:+54843284 | None:intergenic |
| CTGGACACTGTACTGGTCCT+TGG | 0.413853 | 8_4:-54842832 | Msa1334440:CDS |
| AGAGCTAAAGGATTCTCTAT+TGG | 0.420200 | 8_4:-54842952 | Msa1334440:CDS |
| AGAATCAGCTTCCTGCAATT+CGG | 0.430055 | 8_4:+54842903 | None:intergenic |
| GCCATGGTTTCATCAACTAT+AGG | 0.450016 | 8_4:+54843165 | None:intergenic |
| TGGACACTGTACTGGTCCTT+GGG | 0.463405 | 8_4:-54842831 | Msa1334440:CDS |
| ATATCTCATCAGAATGATGT+TGG | 0.470355 | 8_4:+54842793 | None:intergenic |
| AGTTGTGTTCTTCAAGTTGA+AGG | 0.472243 | 8_4:-54843079 | Msa1334440:CDS |
| GGAAAATCTGGACACTGTAC+TGG | 0.477993 | 8_4:-54842839 | Msa1334440:CDS |
| TCCTGCAATTCGGTTAAACC+TGG | 0.483602 | 8_4:+54842913 | None:intergenic |
| CGAGGTTCACGGTAAGGACT+TGG | 0.489470 | 8_4:-54843127 | Msa1334440:CDS |
| GAAAGATGAAAGGGAATTGG+AGG | 0.496529 | 8_4:+54843287 | None:intergenic |
| TGAAACCATGGCTCTTGATT+GGG | 0.498755 | 8_4:-54843154 | Msa1334440:CDS |
| GATTGGGTCACCGAGGTTCA+CGG | 0.504028 | 8_4:-54843138 | Msa1334440:CDS |
| AGAACCAACAACAGAAAGAA+AGG | 0.506793 | 8_4:-54843461 | Msa1334440:CDS |
| TATCTCATCAGAATGATGTT+GGG | 0.526285 | 8_4:+54842794 | None:intergenic |
| TGCAGTGCACCCTACACACT+TGG | 0.533139 | 8_4:-54843208 | Msa1334440:CDS |
| ACAATCAGCGATTGATTCCA+TGG | 0.534420 | 8_4:-54843385 | Msa1334440:CDS |
| GTGTGTAGGGTGCACTGCAT+AGG | 0.548626 | 8_4:+54843212 | None:intergenic |
| GAGCCACTTCACTTAACTAT+GGG | 0.556132 | 8_4:-54843330 | Msa1334440:CDS |
| GGTCACCGAGGTTCACGGTA+AGG | 0.556416 | 8_4:-54843133 | Msa1334440:CDS |
| TGATGACAGCCAAGTGTGTA+GGG | 0.562820 | 8_4:+54843199 | None:intergenic |
| AGTGAAACTGAAAGATGAAA+GGG | 0.568571 | 8_4:+54843278 | None:intergenic |
| AAGCTGTTCAGTTTAACTGT+GGG | 0.568912 | 8_4:-54842993 | Msa1334440:CDS |
| GTGTTCTTCAAGTTGAAGGA+GGG | 0.573144 | 8_4:-54843075 | Msa1334440:CDS |
| ATGGAATCAATCGCTGATTG+TGG | 0.574412 | 8_4:+54843387 | None:intergenic |
| TCACTTAACTATGGGTCCGT+TGG | 0.580187 | 8_4:-54843322 | Msa1334440:CDS |
| GGAATTCACTTGCTTCACCA+TGG | 0.585437 | 8_4:+54843368 | None:intergenic |
| GAGAATCCTTTAGCTCTACC+AGG | 0.585556 | 8_4:+54842958 | None:intergenic |
| TGTGTTCTTCAAGTTGAAGG+AGG | 0.590785 | 8_4:-54843076 | Msa1334440:CDS |
| AAAGCTGTTCAGTTTAACTG+TGG | 0.598480 | 8_4:-54842994 | Msa1334440:CDS |
| GAGTGAAACTGAAAGATGAA+AGG | 0.600199 | 8_4:+54843277 | None:intergenic |
| GTTATCAATAATCGAGCATG+TGG | 0.614479 | 8_4:-54843436 | Msa1334440:CDS |
| ATAGGCATGGAGATCTTCGT+TGG | 0.619096 | 8_4:+54843230 | None:intergenic |
| TTGATGACAGCCAAGTGTGT+AGG | 0.625608 | 8_4:+54843198 | None:intergenic |
| GCCTATAGTTGATGAAACCA+TGG | 0.626475 | 8_4:-54843166 | Msa1334440:CDS |
| GGACCCATAGTTAAGTGAAG+TGG | 0.629855 | 8_4:+54843327 | None:intergenic |
| GGCTATGCATCACATACCCA+AGG | 0.633264 | 8_4:+54842815 | None:intergenic |
| TAGGGTGCACTGCATAGGCA+TGG | 0.636624 | 8_4:+54843217 | None:intergenic |
| GAGGATTGAATACTTACCAA+CGG | 0.640198 | 8_4:+54843306 | None:intergenic |
| GGTGACCCAATCAAGAGCCA+TGG | 0.645022 | 8_4:+54843149 | None:intergenic |
| GGCTCTTGATTGGGTCACCG+AGG | 0.651959 | 8_4:-54843145 | Msa1334440:CDS |
| CAAGTCCTTACCGTGAACCT+CGG | 0.655186 | 8_4:+54843128 | None:intergenic |
| AAGGACTTGGTTCTACAACA+TGG | 0.659065 | 8_4:-54843114 | Msa1334440:CDS |
| TGGCTCTTCAAGAGAGACAA+GGG | 0.659348 | 8_4:+54843347 | None:intergenic |
| GTGGCTCTTCAAGAGAGACA+AGG | 0.665275 | 8_4:+54843346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATTAAAGTTAAAGAATGA+AGG | - | chr8_4:54842835-54842854 | Msa1334440:CDS | 20.0% |
| !! | GTATTAAAGTTAAAGAATGA+AGG | - | chr8_4:54842835-54842854 | Msa1334440:CDS | 20.0% |
| ! | CAGTTTAACTAACCAAATAA+CGG | + | chr8_4:54842809-54842828 | None:intergenic | 25.0% |
| !!! | AATGAAGGAAGTATTGAATA+TGG | - | chr8_4:54842850-54842869 | Msa1334440:CDS | 25.0% |
| !!! | ATGAAGGAAGTATTGAATAT+GGG | - | chr8_4:54842851-54842870 | Msa1334440:CDS | 25.0% |
| ! | TCACATGAATGATAAGATTA+AGG | - | chr8_4:54843499-54843518 | Msa1334440:intron | 25.0% |
| ! | TGATAAGATTAAGGAAAATC+TGG | - | chr8_4:54843508-54843527 | Msa1334440:intron | 25.0% |
| ! | CAGTTTAACTAACCAAATAA+CGG | + | chr8_4:54842809-54842828 | None:intergenic | 25.0% |
| !!! | AATGAAGGAAGTATTGAATA+TGG | - | chr8_4:54842850-54842869 | Msa1334440:CDS | 25.0% |
| !!! | ATGAAGGAAGTATTGAATAT+GGG | - | chr8_4:54842851-54842870 | Msa1334440:CDS | 25.0% |
| ! | TCACATGAATGATAAGATTA+AGG | - | chr8_4:54843499-54843518 | Msa1334440:intron | 25.0% |
| ! | TGATAAGATTAAGGAAAATC+TGG | - | chr8_4:54843508-54843527 | Msa1334440:intron | 25.0% |
| AGTGAAACTGAAAGATGAAA+GGG | + | chr8_4:54843084-54843103 | None:intergenic | 30.0% | |
| !! | AGTGAAAAATGAGGTTTTGA+AGG | - | chr8_4:54843319-54843338 | Msa1334440:CDS | 30.0% |
| !!! | GTGAAAAATGAGGTTTTGAA+GGG | - | chr8_4:54843320-54843339 | Msa1334440:CDS | 30.0% |
| CTGATTCTGATGAGAAATTT+GGG | - | chr8_4:54843471-54843490 | Msa1334440:CDS | 30.0% | |
| AGTGAAACTGAAAGATGAAA+GGG | + | chr8_4:54843084-54843103 | None:intergenic | 30.0% | |
| !! | AGTGAAAAATGAGGTTTTGA+AGG | - | chr8_4:54843319-54843338 | Msa1334440:CDS | 30.0% |
| !!! | GTGAAAAATGAGGTTTTGAA+GGG | - | chr8_4:54843320-54843339 | Msa1334440:CDS | 30.0% |
| CTGATTCTGATGAGAAATTT+GGG | - | chr8_4:54843471-54843490 | Msa1334440:CDS | 30.0% | |
| !! | ATATGGGAGAGTTATTTTGC+AGG | - | chr8_4:54842867-54842886 | Msa1334440:CDS | 35.0% |
| !! | TATGGGAGAGTTATTTTGCA+GGG | - | chr8_4:54842868-54842887 | Msa1334440:CDS | 35.0% |
| AGAACCAACAACAGAAAGAA+AGG | - | chr8_4:54842898-54842917 | Msa1334440:CDS | 35.0% | |
| ACATCCTTTCTTTCTGTTGT+TGG | + | chr8_4:54842905-54842924 | None:intergenic | 35.0% | |
| GTTATCAATAATCGAGCATG+TGG | - | chr8_4:54842923-54842942 | Msa1334440:CDS | 35.0% | |
| GAGGATTGAATACTTACCAA+CGG | + | chr8_4:54843056-54843075 | None:intergenic | 35.0% | |
| ACTGAAAGATGAAAGGGAAT+TGG | + | chr8_4:54843078-54843097 | None:intergenic | 35.0% | |
| GAGTGAAACTGAAAGATGAA+AGG | + | chr8_4:54843085-54843104 | None:intergenic | 35.0% | |
| !! | AGTTGTGTTCTTCAAGTTGA+AGG | - | chr8_4:54843280-54843299 | Msa1334440:CDS | 35.0% |
| AAAGCTGTTCAGTTTAACTG+TGG | - | chr8_4:54843365-54843384 | Msa1334440:CDS | 35.0% | |
| AAGCTGTTCAGTTTAACTGT+GGG | - | chr8_4:54843366-54843385 | Msa1334440:CDS | 35.0% | |
| AGAGCTAAAGGATTCTCTAT+TGG | - | chr8_4:54843407-54843426 | Msa1334440:CDS | 35.0% | |
| TAAACCTGGAAAAACTGCAA+CGG | + | chr8_4:54843435-54843454 | None:intergenic | 35.0% | |
| ! | GCTGATTCTGATGAGAAATT+TGG | - | chr8_4:54843470-54843489 | Msa1334440:CDS | 35.0% |
| !! | ATATGGGAGAGTTATTTTGC+AGG | - | chr8_4:54842867-54842886 | Msa1334440:CDS | 35.0% |
| !! | TATGGGAGAGTTATTTTGCA+GGG | - | chr8_4:54842868-54842887 | Msa1334440:CDS | 35.0% |
| AGAACCAACAACAGAAAGAA+AGG | - | chr8_4:54842898-54842917 | Msa1334440:CDS | 35.0% | |
| ACATCCTTTCTTTCTGTTGT+TGG | + | chr8_4:54842905-54842924 | None:intergenic | 35.0% | |
| GTTATCAATAATCGAGCATG+TGG | - | chr8_4:54842923-54842942 | Msa1334440:CDS | 35.0% | |
| GAGGATTGAATACTTACCAA+CGG | + | chr8_4:54843056-54843075 | None:intergenic | 35.0% | |
| ACTGAAAGATGAAAGGGAAT+TGG | + | chr8_4:54843078-54843097 | None:intergenic | 35.0% | |
| GAGTGAAACTGAAAGATGAA+AGG | + | chr8_4:54843085-54843104 | None:intergenic | 35.0% | |
| !! | AGTTGTGTTCTTCAAGTTGA+AGG | - | chr8_4:54843280-54843299 | Msa1334440:CDS | 35.0% |
| AAAGCTGTTCAGTTTAACTG+TGG | - | chr8_4:54843365-54843384 | Msa1334440:CDS | 35.0% | |
| AAGCTGTTCAGTTTAACTGT+GGG | - | chr8_4:54843366-54843385 | Msa1334440:CDS | 35.0% | |
| AGAGCTAAAGGATTCTCTAT+TGG | - | chr8_4:54843407-54843426 | Msa1334440:CDS | 35.0% | |
| TAAACCTGGAAAAACTGCAA+CGG | + | chr8_4:54843435-54843454 | None:intergenic | 35.0% | |
| ! | GCTGATTCTGATGAGAAATT+TGG | - | chr8_4:54843470-54843489 | Msa1334440:CDS | 35.0% |
| ! | ATGGAATCAATCGCTGATTG+TGG | + | chr8_4:54842975-54842994 | None:intergenic | 40.0% |
| ! | ACAATCAGCGATTGATTCCA+TGG | - | chr8_4:54842974-54842993 | Msa1334440:CDS | 40.0% |
| AGAGCCACTTCACTTAACTA+TGG | - | chr8_4:54843028-54843047 | Msa1334440:CDS | 40.0% | |
| GAGCCACTTCACTTAACTAT+GGG | - | chr8_4:54843029-54843048 | Msa1334440:CDS | 40.0% | |
| GAAAGATGAAAGGGAATTGG+AGG | + | chr8_4:54843075-54843094 | None:intergenic | 40.0% | |
| !! | GCCTATAGTTGATGAAACCA+TGG | - | chr8_4:54843193-54843212 | Msa1334440:CDS | 40.0% |
| GCCATGGTTTCATCAACTAT+AGG | + | chr8_4:54843197-54843216 | None:intergenic | 40.0% | |
| ATGAAACCATGGCTCTTGAT+TGG | - | chr8_4:54843204-54843223 | Msa1334440:CDS | 40.0% | |
| TGAAACCATGGCTCTTGATT+GGG | - | chr8_4:54843205-54843224 | Msa1334440:CDS | 40.0% | |
| !! | AAGGACTTGGTTCTACAACA+TGG | - | chr8_4:54843245-54843264 | Msa1334440:CDS | 40.0% |
| !! | TGTGTTCTTCAAGTTGAAGG+AGG | - | chr8_4:54843283-54843302 | Msa1334440:CDS | 40.0% |
| !! | GTGTTCTTCAAGTTGAAGGA+GGG | - | chr8_4:54843284-54843303 | Msa1334440:CDS | 40.0% |
| !! | TTCAAGTTGAAGGAGGGTTT+GGG | - | chr8_4:54843290-54843309 | Msa1334440:CDS | 40.0% |
| GGGAGAAGAAGTGAAAAATG+AGG | - | chr8_4:54843310-54843329 | Msa1334440:CDS | 40.0% | |
| !!! | GAGGTTTTGAAGGGTATAAG+TGG | - | chr8_4:54843329-54843348 | Msa1334440:CDS | 40.0% |
| TGTGGGAAAAATTTCTCTCC+TGG | - | chr8_4:54843383-54843402 | Msa1334440:CDS | 40.0% | |
| AGAATCAGCTTCCTGCAATT+CGG | + | chr8_4:54843459-54843478 | None:intergenic | 40.0% | |
| ! | ATGGAATCAATCGCTGATTG+TGG | + | chr8_4:54842975-54842994 | None:intergenic | 40.0% |
| ! | ACAATCAGCGATTGATTCCA+TGG | - | chr8_4:54842974-54842993 | Msa1334440:CDS | 40.0% |
| AGAGCCACTTCACTTAACTA+TGG | - | chr8_4:54843028-54843047 | Msa1334440:CDS | 40.0% | |
| GAGCCACTTCACTTAACTAT+GGG | - | chr8_4:54843029-54843048 | Msa1334440:CDS | 40.0% | |
| GAAAGATGAAAGGGAATTGG+AGG | + | chr8_4:54843075-54843094 | None:intergenic | 40.0% | |
| !! | GCCTATAGTTGATGAAACCA+TGG | - | chr8_4:54843193-54843212 | Msa1334440:CDS | 40.0% |
| GCCATGGTTTCATCAACTAT+AGG | + | chr8_4:54843197-54843216 | None:intergenic | 40.0% | |
| ATGAAACCATGGCTCTTGAT+TGG | - | chr8_4:54843204-54843223 | Msa1334440:CDS | 40.0% | |
| TGAAACCATGGCTCTTGATT+GGG | - | chr8_4:54843205-54843224 | Msa1334440:CDS | 40.0% | |
| !! | AAGGACTTGGTTCTACAACA+TGG | - | chr8_4:54843245-54843264 | Msa1334440:CDS | 40.0% |
| !! | TGTGTTCTTCAAGTTGAAGG+AGG | - | chr8_4:54843283-54843302 | Msa1334440:CDS | 40.0% |
| !! | GTGTTCTTCAAGTTGAAGGA+GGG | - | chr8_4:54843284-54843303 | Msa1334440:CDS | 40.0% |
| !! | TTCAAGTTGAAGGAGGGTTT+GGG | - | chr8_4:54843290-54843309 | Msa1334440:CDS | 40.0% |
| GGGAGAAGAAGTGAAAAATG+AGG | - | chr8_4:54843310-54843329 | Msa1334440:CDS | 40.0% | |
| !!! | GAGGTTTTGAAGGGTATAAG+TGG | - | chr8_4:54843329-54843348 | Msa1334440:CDS | 40.0% |
| TGTGGGAAAAATTTCTCTCC+TGG | - | chr8_4:54843383-54843402 | Msa1334440:CDS | 40.0% | |
| AGAATCAGCTTCCTGCAATT+CGG | + | chr8_4:54843459-54843478 | None:intergenic | 40.0% | |
| GGAATTCACTTGCTTCACCA+TGG | + | chr8_4:54842994-54843013 | None:intergenic | 45.0% | |
| TGGCTCTTCAAGAGAGACAA+GGG | + | chr8_4:54843015-54843034 | None:intergenic | 45.0% | |
| GGACCCATAGTTAAGTGAAG+TGG | + | chr8_4:54843035-54843054 | None:intergenic | 45.0% | |
| TCACTTAACTATGGGTCCGT+TGG | - | chr8_4:54843037-54843056 | Msa1334440:CDS | 45.0% | |
| ATAGGCATGGAGATCTTCGT+TGG | + | chr8_4:54843132-54843151 | None:intergenic | 45.0% | |
| TGATGACAGCCAAGTGTGTA+GGG | + | chr8_4:54843163-54843182 | None:intergenic | 45.0% | |
| ! | TTGATGACAGCCAAGTGTGT+AGG | + | chr8_4:54843164-54843183 | None:intergenic | 45.0% |
| !! | CTTCAAGTTGAAGGAGGGTT+TGG | - | chr8_4:54843289-54843308 | Msa1334440:CDS | 45.0% |
| TTCTCTCCTGGTAGAGCTAA+AGG | - | chr8_4:54843395-54843414 | Msa1334440:CDS | 45.0% | |
| !! | GAGAATCCTTTAGCTCTACC+AGG | + | chr8_4:54843404-54843423 | None:intergenic | 45.0% |
| TCCAGGTTTAACCGAATTGC+AGG | - | chr8_4:54843445-54843464 | Msa1334440:CDS | 45.0% | |
| TCCTGCAATTCGGTTAAACC+TGG | + | chr8_4:54843449-54843468 | None:intergenic | 45.0% | |
| GGAAAATCTGGACACTGTAC+TGG | - | chr8_4:54843520-54843539 | Msa1334440:intron | 45.0% | |
| GGAATTCACTTGCTTCACCA+TGG | + | chr8_4:54842994-54843013 | None:intergenic | 45.0% | |
| TGGCTCTTCAAGAGAGACAA+GGG | + | chr8_4:54843015-54843034 | None:intergenic | 45.0% | |
| GGACCCATAGTTAAGTGAAG+TGG | + | chr8_4:54843035-54843054 | None:intergenic | 45.0% | |
| TCACTTAACTATGGGTCCGT+TGG | - | chr8_4:54843037-54843056 | Msa1334440:CDS | 45.0% | |
| ATAGGCATGGAGATCTTCGT+TGG | + | chr8_4:54843132-54843151 | None:intergenic | 45.0% | |
| TGATGACAGCCAAGTGTGTA+GGG | + | chr8_4:54843163-54843182 | None:intergenic | 45.0% | |
| ! | TTGATGACAGCCAAGTGTGT+AGG | + | chr8_4:54843164-54843183 | None:intergenic | 45.0% |
| !! | CTTCAAGTTGAAGGAGGGTT+TGG | - | chr8_4:54843289-54843308 | Msa1334440:CDS | 45.0% |
| TTCTCTCCTGGTAGAGCTAA+AGG | - | chr8_4:54843395-54843414 | Msa1334440:CDS | 45.0% | |
| !! | GAGAATCCTTTAGCTCTACC+AGG | + | chr8_4:54843404-54843423 | None:intergenic | 45.0% |
| TCCAGGTTTAACCGAATTGC+AGG | - | chr8_4:54843445-54843464 | Msa1334440:CDS | 45.0% | |
| TCCTGCAATTCGGTTAAACC+TGG | + | chr8_4:54843449-54843468 | None:intergenic | 45.0% | |
| GGAAAATCTGGACACTGTAC+TGG | - | chr8_4:54843520-54843539 | Msa1334440:intron | 45.0% | |
| !! | TCGAGCATGTGGTGTTGTTC+AGG | - | chr8_4:54842934-54842953 | Msa1334440:CDS | 50.0% |
| GTGGCTCTTCAAGAGAGACA+AGG | + | chr8_4:54843016-54843035 | None:intergenic | 50.0% | |
| CAAGTCCTTACCGTGAACCT+CGG | + | chr8_4:54843234-54843253 | None:intergenic | 50.0% | |
| ! | GGTTCCGTTGCAGTTTTTCC+AGG | - | chr8_4:54843428-54843447 | Msa1334440:CDS | 50.0% |
| ! | TGGACACTGTACTGGTCCTT+GGG | - | chr8_4:54843528-54843547 | Msa1334440:intron | 50.0% |
| GGCTATGCATCACATACCCA+AGG | + | chr8_4:54843547-54843566 | None:intergenic | 50.0% | |
| !! | TCGAGCATGTGGTGTTGTTC+AGG | - | chr8_4:54842934-54842953 | Msa1334440:CDS | 50.0% |
| GTGGCTCTTCAAGAGAGACA+AGG | + | chr8_4:54843016-54843035 | None:intergenic | 50.0% | |
| CAAGTCCTTACCGTGAACCT+CGG | + | chr8_4:54843234-54843253 | None:intergenic | 50.0% | |
| ! | GGTTCCGTTGCAGTTTTTCC+AGG | - | chr8_4:54843428-54843447 | Msa1334440:CDS | 50.0% |
| ! | TGGACACTGTACTGGTCCTT+GGG | - | chr8_4:54843528-54843547 | Msa1334440:intron | 50.0% |
| GGCTATGCATCACATACCCA+AGG | + | chr8_4:54843547-54843566 | None:intergenic | 50.0% | |
| TAGGGTGCACTGCATAGGCA+TGG | + | chr8_4:54843145-54843164 | None:intergenic | 55.0% | |
| GTGTGTAGGGTGCACTGCAT+AGG | + | chr8_4:54843150-54843169 | None:intergenic | 55.0% | |
| TGCAGTGCACCCTACACACT+TGG | - | chr8_4:54843151-54843170 | Msa1334440:CDS | 55.0% | |
| GGTGACCCAATCAAGAGCCA+TGG | + | chr8_4:54843213-54843232 | None:intergenic | 55.0% | |
| GATTGGGTCACCGAGGTTCA+CGG | - | chr8_4:54843221-54843240 | Msa1334440:CDS | 55.0% | |
| CGAGGTTCACGGTAAGGACT+TGG | - | chr8_4:54843232-54843251 | Msa1334440:CDS | 55.0% | |
| ! | CTGGACACTGTACTGGTCCT+TGG | - | chr8_4:54843527-54843546 | Msa1334440:intron | 55.0% |
| TAGGGTGCACTGCATAGGCA+TGG | + | chr8_4:54843145-54843164 | None:intergenic | 55.0% | |
| GTGTGTAGGGTGCACTGCAT+AGG | + | chr8_4:54843150-54843169 | None:intergenic | 55.0% | |
| TGCAGTGCACCCTACACACT+TGG | - | chr8_4:54843151-54843170 | Msa1334440:CDS | 55.0% | |
| GGTGACCCAATCAAGAGCCA+TGG | + | chr8_4:54843213-54843232 | None:intergenic | 55.0% | |
| GATTGGGTCACCGAGGTTCA+CGG | - | chr8_4:54843221-54843240 | Msa1334440:CDS | 55.0% | |
| CGAGGTTCACGGTAAGGACT+TGG | - | chr8_4:54843232-54843251 | Msa1334440:CDS | 55.0% | |
| ! | CTGGACACTGTACTGGTCCT+TGG | - | chr8_4:54843527-54843546 | Msa1334440:intron | 55.0% |
| GGCTCTTGATTGGGTCACCG+AGG | - | chr8_4:54843214-54843233 | Msa1334440:CDS | 60.0% | |
| GGTCACCGAGGTTCACGGTA+AGG | - | chr8_4:54843226-54843245 | Msa1334440:CDS | 60.0% | |
| GGCTCTTGATTGGGTCACCG+AGG | - | chr8_4:54843214-54843233 | Msa1334440:CDS | 60.0% | |
| GGTCACCGAGGTTCACGGTA+AGG | - | chr8_4:54843226-54843245 | Msa1334440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 54842801 | 54843580 | 54842801 | ID=Msa1334440;Name=Msa1334440 |
| chr8_4 | mRNA | 54842801 | 54843580 | 54842801 | ID=Msa1334440-mRNA-1;Parent=Msa1334440;Name=Msa1334440-mRNA-1;_AED=0.35;_eAED=0.36;_QI=0|0|0|0.5|1|1|2|0|232 |
| chr8_4 | exon | 54843574 | 54843580 | 54843574 | ID=Msa1334440-mRNA-1:exon:17121;Parent=Msa1334440-mRNA-1 |
| chr8_4 | exon | 54842801 | 54843492 | 54842801 | ID=Msa1334440-mRNA-1:exon:17120;Parent=Msa1334440-mRNA-1 |
| chr8_4 | CDS | 54843574 | 54843580 | 54843574 | ID=Msa1334440-mRNA-1:cds;Parent=Msa1334440-mRNA-1 |
| chr8_4 | CDS | 54842801 | 54843492 | 54842801 | ID=Msa1334440-mRNA-1:cds;Parent=Msa1334440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
