Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338270 | XP_039686230.1 | 84.340 | 1060 | 166 | 0 | 2 | 1061 | 537 | 1596 | 0.0 | 1908 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338270 | A0A2K3PKV8 | 67.043 | 1062 | 344 | 4 | 2 | 1061 | 348 | 1405 | 0.0 | 1526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0768290 | Msa1338270 | 0.812432 | 4.252592e-51 | -8.615850e-47 |
| Msa1338270 | Msa1400720 | 0.804669 | 1.932892e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338270 | MtrunA17_Chr3g0101871 | 49.141 | 582 | 295 | 1 | 10 | 590 | 544 | 1125 | 0.0 | 581 |
| Msa1338270 | MtrunA17_Chr7g0270391 | 59.705 | 407 | 164 | 0 | 104 | 510 | 1 | 407 | 5.53e-177 | 526 |
| Msa1338270 | MtrunA17_Chr3g0101861 | 51.702 | 470 | 222 | 1 | 592 | 1061 | 1 | 465 | 1.20e-169 | 508 |
| Msa1338270 | MtrunA17_Chr1g0206501 | 45.161 | 496 | 271 | 1 | 354 | 848 | 3 | 498 | 1.23e-151 | 463 |
| Msa1338270 | MtrunA17_Chr7g0269651 | 50.864 | 405 | 193 | 3 | 2 | 404 | 587 | 987 | 4.23e-134 | 432 |
| Msa1338270 | MtrunA17_Chr1g0173691 | 51.213 | 371 | 181 | 0 | 691 | 1061 | 1 | 371 | 1.10e-128 | 397 |
| Msa1338270 | MtrunA17_Chr3g0093501 | 56.643 | 286 | 107 | 3 | 26 | 311 | 1 | 269 | 1.56e-112 | 351 |
| Msa1338270 | MtrunA17_Chr7g0269671 | 49.699 | 332 | 166 | 1 | 691 | 1021 | 1 | 332 | 7.20e-109 | 343 |
| Msa1338270 | MtrunA17_Chr3g0133361 | 55.172 | 290 | 130 | 0 | 769 | 1058 | 1 | 290 | 1.22e-108 | 341 |
| Msa1338270 | MtrunA17_Chr1g0173681 | 48.214 | 336 | 172 | 1 | 208 | 543 | 2 | 335 | 1.56e-104 | 332 |
| Msa1338270 | MtrunA17_Chr6g0472831 | 54.582 | 251 | 114 | 0 | 769 | 1019 | 1 | 251 | 8.94e-95 | 302 |
| Msa1338270 | MtrunA17_Chr1g0206511 | 57.071 | 198 | 85 | 0 | 864 | 1061 | 1 | 198 | 2.25e-72 | 239 |
| Msa1338270 | MtrunA17_Chr7g0248821 | 57.868 | 197 | 83 | 0 | 865 | 1061 | 1 | 197 | 6.91e-72 | 237 |
| Msa1338270 | MtrunA17_Chr7g0269661 | 42.982 | 228 | 130 | 0 | 441 | 668 | 1 | 228 | 1.05e-56 | 196 |
| Msa1338270 | MtrunA17_Chr1g0173671 | 50.820 | 183 | 90 | 0 | 2 | 184 | 577 | 759 | 2.78e-56 | 209 |
| Msa1338270 | MtrunA17_Chr3g0100401 | 47.244 | 127 | 67 | 0 | 864 | 990 | 1 | 127 | 6.73e-35 | 129 |
| Msa1338270 | MtrunA17_Chr3g0139511 | 57.895 | 76 | 32 | 0 | 987 | 1062 | 106 | 181 | 2.70e-21 | 92.8 |
| Msa1338270 | MtrunA17_Chr4g0021841 | 49.438 | 89 | 45 | 0 | 528 | 616 | 2 | 90 | 1.21e-19 | 84.7 |
| Msa1338270 | MtrunA17_Chr1g0206491 | 52.703 | 74 | 35 | 0 | 2 | 75 | 503 | 576 | 6.54e-19 | 92.0 |
| Msa1338270 | MtrunA17_Chr2g0308591 | 59.322 | 59 | 22 | 1 | 674 | 732 | 47 | 103 | 4.55e-17 | 77.8 |
| Msa1338270 | MtrunA17_Chr3g0129801 | 64.583 | 48 | 17 | 0 | 964 | 1011 | 7 | 54 | 1.63e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1338270 | AT3G51700.1 | 42.268 | 291 | 162 | 3 | 771 | 1058 | 45 | 332 | 3.09e-63 | 219 |
| Msa1338270 | AT3G51690.1 | 41.877 | 277 | 156 | 3 | 786 | 1061 | 59 | 331 | 3.45e-63 | 218 |
| Msa1338270 | AT5G28780.1 | 38.585 | 311 | 167 | 7 | 765 | 1062 | 32 | 331 | 1.96e-55 | 196 |
Find 241 sgRNAs with CRISPR-Local
Find 415 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTATATCACGTTTAT+TGG | 0.117972 | tig0001957:-8950 | Msa1338270:intergenic |
| TTGTCTTCTTGAAAACTTAA+AGG | 0.168612 | tig0001957:-9661 | Msa1338270:intergenic |
| ATCGGTTCCAACAATGTTTA+TGG | 0.171883 | tig0001957:+7409 | Msa1338270:CDS |
| CAATAACTTGCAATCAAAAT+TGG | 0.175953 | tig0001957:+6439 | Msa1338270:CDS |
| AATTGTATTAAAACTGTTAA+TGG | 0.176173 | tig0001957:+7644 | Msa1338270:CDS |
| GAGAAGCAAGTCTTATTATA+TGG | 0.208546 | tig0001957:+8764 | Msa1338270:CDS |
| ATACTTCCTGATTCCTTTAC+AGG | 0.222070 | tig0001957:+6336 | Msa1338270:CDS |
| TTATTCTTGGTGGAGATTTC+AGG | 0.233288 | tig0001957:+8902 | Msa1338270:CDS |
| CTTCCACATAAAGGTCTTTC+CGG | 0.253434 | tig0001957:-8560 | Msa1338270:intergenic |
| GTTGCTTTCCATACATTATC+AGG | 0.258340 | tig0001957:-7827 | Msa1338270:intergenic |
| AAATAAATATTGCAGATTTA+CGG | 0.272830 | tig0001957:+8239 | Msa1338270:intron |
| GGAGGTAAAGTTGTTATTCT+TGG | 0.274266 | tig0001957:+8889 | Msa1338270:CDS |
| GATTTGGTCCCAACAGATTC+AGG | 0.285700 | tig0001957:+9633 | Msa1338270:CDS |
| ATGTGGAGGTTTGCTCTATC+AGG | 0.311608 | tig0001957:-7161 | Msa1338270:intergenic |
| TTGAATGACATAAATTGTTC+TGG | 0.315779 | tig0001957:+9426 | Msa1338270:CDS |
| GTGGGTTTCGCCGGAATTGA+TGG | 0.317800 | tig0001957:-11235 | Msa1338270:intergenic |
| CTATTAACTCTTCTAATCTA+TGG | 0.326244 | tig0001957:+8977 | Msa1338270:CDS |
| CGGAAAACCATCCTCGTCTA+TGG | 0.327898 | tig0001957:-6961 | Msa1338270:intergenic |
| CCGGAACTGGTGGTGGTTGT+GGG | 0.328915 | tig0001957:-11253 | Msa1338270:intergenic |
| TGTCTTCTTGAAAACTTAAA+GGG | 0.336377 | tig0001957:-9660 | Msa1338270:intergenic |
| TTCAATATCAATCTGTGGTT+TGG | 0.342694 | tig0001957:-9453 | Msa1338270:intergenic |
| GCCGGAACTGGTGGTGGTTG+TGG | 0.345164 | tig0001957:-11254 | Msa1338270:intergenic |
| AGATCAGGGAATTTGCAAAA+TGG | 0.345407 | tig0001957:+9073 | Msa1338270:CDS |
| CTTAGTTGTGTGCAGTTTGT+TGG | 0.346748 | tig0001957:-6760 | Msa1338270:intergenic |
| GACGTTTCAAAAGGGTTGTC+AGG | 0.348102 | tig0001957:+7616 | Msa1338270:CDS |
| AGCAATGAATTTATTTGCTT+GGG | 0.350738 | tig0001957:-8383 | Msa1338270:intergenic |
| ATGGCCTTCATTTATGAGAT+TGG | 0.352073 | tig0001957:+7310 | Msa1338270:CDS |
| AATCTTACCTTGTGACCTAA+TGG | 0.353507 | tig0001957:-8596 | Msa1338270:intergenic |
| AAAGACTTTGTTTCAGAGAA+AGG | 0.354182 | tig0001957:+6471 | Msa1338270:CDS |
| CAGCAATGAATTTATTTGCT+TGG | 0.358107 | tig0001957:-8384 | Msa1338270:intergenic |
| CCCACAACCACCACCAGTTC+CGG | 0.358485 | tig0001957:+11253 | Msa1338270:CDS |
| TTTAAGAAGGAGCAGATGTT+TGG | 0.359782 | tig0001957:+6567 | Msa1338270:CDS |
| TAACGCTTAATTTCATCAAT+TGG | 0.361219 | tig0001957:-7218 | Msa1338270:intergenic |
| ATTACTGCTACTGTCATTAC+TGG | 0.373345 | tig0001957:+9573 | Msa1338270:CDS |
| GTCTACCCTCACTGTATTGT+TGG | 0.376734 | tig0001957:-7448 | Msa1338270:intergenic |
| GTGAAAATGCTAATGAGATC+AGG | 0.377682 | tig0001957:+9058 | Msa1338270:CDS |
| CGAAGGATCCTCAACATTCC+AGG | 0.377752 | tig0001957:+7887 | Msa1338270:CDS |
| ATCCATGCCATACCCAGTTC+TGG | 0.378499 | tig0001957:+8348 | Msa1338270:CDS |
| ACACAACTAAGGAAATAGAT+AGG | 0.379265 | tig0001957:+6772 | Msa1338270:CDS |
| ACGGTACTCCTTTGGACAAT+AGG | 0.379493 | tig0001957:+7024 | Msa1338270:CDS |
| AATGACAAAGAGTTCATTGA+TGG | 0.382911 | tig0001957:+7719 | Msa1338270:CDS |
| ATGGTAATTTGTAAGAGGTT+TGG | 0.386877 | tig0001957:+6396 | Msa1338270:CDS |
| GTTAATCCCAAGGATGGATT+TGG | 0.395835 | tig0001957:+9617 | Msa1338270:CDS |
| TTGTATGGATATGGTGGAAC+CGG | 0.400610 | tig0001957:+8541 | Msa1338270:CDS |
| AGAAATATTGATCAAGCAAA+TGG | 0.405333 | tig0001957:+9501 | Msa1338270:CDS |
| CACTGTATTGTTGGTTTGCA+AGG | 0.407229 | tig0001957:-7439 | Msa1338270:intergenic |
| ATAACCCTGAAAAGAGGATA+TGG | 0.408393 | tig0001957:+7507 | Msa1338270:CDS |
| TCAGGGGCAATCATTGTCTA+AGG | 0.411359 | tig0001957:+9725 | Msa1338270:CDS |
| GATCAAGAACGGTACTCCTT+TGG | 0.411613 | tig0001957:+7016 | Msa1338270:CDS |
| TTAAGAAGGAGCAGATGTTT+GGG | 0.411949 | tig0001957:+6568 | Msa1338270:CDS |
| GACAGTGCCTCATCCAGAAC+TGG | 0.413662 | tig0001957:-8361 | Msa1338270:intergenic |
| TCCTACATTCCGGTAGGGTC+AGG | 0.416219 | tig0001957:+7566 | Msa1338270:CDS |
| TACAAATTACCATTGCATCT+TGG | 0.424027 | tig0001957:-6386 | Msa1338270:intergenic |
| ATCAAGAGTGTTGGATTGTA+AGG | 0.424042 | tig0001957:-7056 | Msa1338270:intergenic |
| GTCATTACTGGCAAGGGTGC+TGG | 0.425550 | tig0001957:+9585 | Msa1338270:CDS |
| ATGCAATGGTAATTTGTAAG+AGG | 0.426825 | tig0001957:+6391 | Msa1338270:CDS |
| GATCCTGTTGACGTTTCAAA+AGG | 0.431328 | tig0001957:+7607 | Msa1338270:CDS |
| GTTATTGTAATGAATAGATC+GGG | 0.431605 | tig0001957:-6423 | Msa1338270:intergenic |
| ATCGCTTCCACCATCAATTC+CGG | 0.434565 | tig0001957:+11225 | Msa1338270:CDS |
| CAAGATGCATGTTATGCGCT+TGG | 0.435528 | tig0001957:+7686 | Msa1338270:CDS |
| CAAGCAAATGGCTTATGTAA+TGG | 0.437068 | tig0001957:+9513 | Msa1338270:CDS |
| TGTTTGATATCCATGAGAAA+TGG | 0.437141 | tig0001957:+7291 | Msa1338270:CDS |
| TCGAGGGTAACCACAAAGAA+AGG | 0.438162 | tig0001957:+9804 | Msa1338270:CDS |
| GAAGCAGGAAGAGGAAGATC+TGG | 0.439465 | tig0001957:-11202 | Msa1338270:intergenic |
| GACAATGACCCGCGGAAAGC+CGG | 0.440325 | tig0001957:+6303 | Msa1338270:CDS |
| GTGAAGTCGGTGAGCTTCAG+AGG | 0.442186 | tig0001957:+11485 | Msa1338270:intron |
| GATAATATGAACAAACCCTT+TGG | 0.442280 | tig0001957:+8868 | Msa1338270:CDS |
| AGAAGCAAGTCTTATTATAT+GGG | 0.442939 | tig0001957:+8765 | Msa1338270:CDS |
| TGCACAAGCCTGATAATGTA+TGG | 0.444340 | tig0001957:+7819 | Msa1338270:CDS |
| AGATAATGTCTTCCACATAA+AGG | 0.444531 | tig0001957:-8569 | Msa1338270:intergenic |
| AAACAGAATCTGTGCATCAT+AGG | 0.445385 | tig0001957:-8796 | Msa1338270:intergenic |
| TTGGGACCAAATCCATCCTT+GGG | 0.447535 | tig0001957:-9623 | Msa1338270:intergenic |
| GGTAAAGTTGTTATTCTTGG+TGG | 0.448242 | tig0001957:+8892 | Msa1338270:CDS |
| AAGATGCATGTTATGCGCTT+GGG | 0.448776 | tig0001957:+7687 | Msa1338270:CDS |
| AGACATTATCTGCCACCATT+AGG | 0.453768 | tig0001957:+8581 | Msa1338270:CDS |
| TCGAGGGTCAACAATGTGTT+AGG | 0.455101 | tig0001957:+7342 | Msa1338270:CDS |
| GGTGAACCTGTAAAGGAATC+AGG | 0.455450 | tig0001957:-6342 | Msa1338270:intergenic |
| CACCTTGCATGAAGGGGAAA+AGG | 0.455746 | tig0001957:+6898 | Msa1338270:CDS |
| GTTTATAAAAGAAGAGATAA+TGG | 0.457843 | tig0001957:+6984 | Msa1338270:CDS |
| GAAAAGTTGTTAATGTGTAA+TGG | 0.461489 | tig0001957:+8304 | Msa1338270:CDS |
| AAGGGAAATCCTGAATCTGT+TGG | 0.462618 | tig0001957:-9642 | Msa1338270:intergenic |
| ATTGCTTCTCTATTGTTGCC+TGG | 0.462715 | tig0001957:+8643 | Msa1338270:CDS |
| CAAGGTGGTTAACTTGTAGT+CGG | 0.463013 | tig0001957:-9539 | Msa1338270:intergenic |
| TGGTAGGCTTTCCTACATTC+CGG | 0.463244 | tig0001957:+7556 | Msa1338270:CDS |
| GTTGGGACCAAATCCATCCT+TGG | 0.463920 | tig0001957:-9624 | Msa1338270:intergenic |
| ACCATCCTCGTCTATGGAAG+TGG | 0.468912 | tig0001957:-6955 | Msa1338270:intergenic |
| GAAACGGCCATGTGCAACTT+TGG | 0.470239 | tig0001957:-6831 | Msa1338270:intergenic |
| TATGACAATCAACAAGAGTC+AGG | 0.471433 | tig0001957:+9707 | Msa1338270:CDS |
| AATGAAATCAGTTGAGGCTC+AGG | 0.472656 | tig0001957:+8501 | Msa1338270:CDS |
| GTGGTGGTTGTGGGTTTCGC+CGG | 0.475063 | tig0001957:-11244 | Msa1338270:intergenic |
| AATATTTCTTAACAACATGA+TGG | 0.477601 | tig0001957:-9487 | Msa1338270:intergenic |
| AACCATGCCATAAACATTGT+TGG | 0.479260 | tig0001957:-7416 | Msa1338270:intergenic |
| AATAACAACTTTACCTCCAA+AGG | 0.479767 | tig0001957:-8884 | Msa1338270:intergenic |
| CGGTGGTGCACCAATCTCCT+TGG | 0.483624 | tig0001957:-9398 | Msa1338270:intergenic |
| CTTGAATTCACCTTGCATGA+AGG | 0.486205 | tig0001957:+6890 | Msa1338270:CDS |
| ATGGGAATTCAGCATATGTC+AGG | 0.486972 | tig0001957:-7472 | Msa1338270:intergenic |
| GGGCAATCATTGTCTAAGGT+TGG | 0.487471 | tig0001957:+9729 | Msa1338270:CDS |
| AGGAAGTATAACACGCTGTC+CGG | 0.487630 | tig0001957:-6322 | Msa1338270:intergenic |
| AAGGTGGTTAACTTGTAGTC+GGG | 0.488095 | tig0001957:-9538 | Msa1338270:intergenic |
| CCTCGACCGGTGTTTACGCA+TGG | 0.488404 | tig0001957:+9762 | Msa1338270:CDS |
| GGAGGAATGCATAACTCCTC+TGG | 0.488562 | tig0001957:-9159 | Msa1338270:intergenic |
| CCATGCGTAAACACCGGTCG+AGG | 0.489071 | tig0001957:-9762 | Msa1338270:intergenic |
| CACAGATTGATATTGAAAAC+CGG | 0.489393 | tig0001957:+9459 | Msa1338270:CDS |
| TCAACAATGTGTTAGGTTCA+AGG | 0.492426 | tig0001957:+7349 | Msa1338270:CDS |
| TGGCAAGGGTGCTGGACAAA+AGG | 0.493117 | tig0001957:+9593 | Msa1338270:CDS |
| ACGAGAGAAAGAAAAGAAGA+AGG | 0.494693 | tig0001957:+11595 | Msa1338270:CDS |
| TGACAATCGAAGTATATTTG+AGG | 0.496466 | tig0001957:+9242 | Msa1338270:CDS |
| ATAGCAAAACACAATGAAAC+CGG | 0.496676 | tig0001957:-9687 | Msa1338270:intergenic |
| TGGTATACAGAAAGTAGAAT+GGG | 0.497601 | tig0001957:-8677 | Msa1338270:intergenic |
| CACGCTGTCCGGCTTTCCGC+GGG | 0.499670 | tig0001957:-6311 | Msa1338270:intergenic |
| AACATGAGGTTAATTGGTGA+TGG | 0.499912 | tig0001957:+9030 | Msa1338270:CDS |
| CGACAATCCGCTACAAGCAT+TGG | 0.501298 | tig0001957:+9185 | Msa1338270:CDS |
| ATCAGATTTGCAAGGAGTAT+CGG | 0.502083 | tig0001957:-9361 | Msa1338270:intergenic |
| ATAACAACTTTACCTCCAAA+GGG | 0.502607 | tig0001957:-8883 | Msa1338270:intergenic |
| TTGAATTCACCTTGCATGAA+GGG | 0.503876 | tig0001957:+6891 | Msa1338270:CDS |
| ATGGTATACAGAAAGTAGAA+TGG | 0.509551 | tig0001957:-8678 | Msa1338270:intergenic |
| AGGGAAATCCTGAATCTGTT+GGG | 0.509800 | tig0001957:-9641 | Msa1338270:intergenic |
| ATGCATCATGTATGTTGAAA+CGG | 0.510113 | tig0001957:-6847 | Msa1338270:intergenic |
| TGATATCTCATCAAGAGTGT+TGG | 0.512077 | tig0001957:-7065 | Msa1338270:intergenic |
| GGAAGCGATGAAGCAGGAAG+AGG | 0.514122 | tig0001957:-11211 | Msa1338270:intergenic |
| TTCCAACAATGTTTATGGCA+TGG | 0.514166 | tig0001957:+7414 | Msa1338270:CDS |
| GCAGGAGACAAGGACGAAGA+AGG | 0.514331 | tig0001957:+7194 | Msa1338270:CDS |
| TGTTGTGAAATATCATCAAT+CGG | 0.516100 | tig0001957:+7391 | Msa1338270:CDS |
| AAAACTCTACAAATAATATC+CGG | 0.517715 | tig0001957:-6513 | Msa1338270:intergenic |
| TGCAAGGAGTATCGGAACTT+AGG | 0.519377 | tig0001957:-9353 | Msa1338270:intergenic |
| GAATGGGCAGTCTTGCCTCC+AGG | 0.521494 | tig0001957:-8661 | Msa1338270:intergenic |
| TAAATGAAGGCCATTTCTCA+TGG | 0.526996 | tig0001957:-7301 | Msa1338270:intergenic |
| TAATAATTGCCAAGATGCAA+TGG | 0.530237 | tig0001957:+6377 | Msa1338270:CDS |
| CCTTAGTGCATCGGATAGAC+CGG | 0.530785 | tig0001957:+6494 | Msa1338270:CDS |
| TCGAAGTATATTTGAGGAGA+AGG | 0.530864 | tig0001957:+9248 | Msa1338270:CDS |
| ACACGCTGTCCGGCTTTCCG+CGG | 0.531434 | tig0001957:-6312 | Msa1338270:intergenic |
| CAACAAACTGCACACAACTA+AGG | 0.532133 | tig0001957:+6761 | Msa1338270:CDS |
| TGAAGATGGTGAGAGCGTCT+TGG | 0.533689 | tig0001957:+9131 | Msa1338270:CDS |
| ATAATGTATGGAAAGCAACT+TGG | 0.536729 | tig0001957:+7831 | Msa1338270:CDS |
| ACTACGATATCCAAGGAGAT+TGG | 0.538578 | tig0001957:+9388 | Msa1338270:CDS |
| AGGCTTTCCTACATTCCGGT+AGG | 0.538816 | tig0001957:+7560 | Msa1338270:CDS |
| CGAGGGTAACCACAAAGAAA+GGG | 0.540237 | tig0001957:+9805 | Msa1338270:CDS |
| ACGTTTCAAAAGGGTTGTCA+GGG | 0.541141 | tig0001957:+7617 | Msa1338270:CDS |
| GCCTCATCCAGAACTGGGTA+TGG | 0.542038 | tig0001957:-8355 | Msa1338270:intergenic |
| GAAAGAAAAGAAGAAGGTGA+TGG | 0.542690 | tig0001957:+11601 | Msa1338270:CDS |
| TGTCACCGTGTGAAGCATCT+TGG | 0.543252 | tig0001957:+7258 | Msa1338270:CDS |
| CCGGTCTATCCGATGCACTA+AGG | 0.543360 | tig0001957:-6494 | Msa1338270:intergenic |
| AGAGAAAGGCCTTAGTGCAT+CGG | 0.543750 | tig0001957:+6485 | Msa1338270:CDS |
| AGTTATTGTAATGAATAGAT+CGG | 0.544669 | tig0001957:-6424 | Msa1338270:intergenic |
| TCAATGTTATTAACAATACC+TGG | 0.546194 | tig0001957:-9222 | Msa1338270:intergenic |
| TACCGTAGAGTTTCAAAAGA+GGG | 0.546968 | tig0001957:+6698 | Msa1338270:CDS |
| ATGTTTGGGAAAGTCACAGC+AGG | 0.547153 | tig0001957:+6582 | Msa1338270:CDS |
| TGAATTCACCTTGCATGAAG+GGG | 0.548620 | tig0001957:+6892 | Msa1338270:CDS |
| AAAAGAGGATATGGCATCCA+AGG | 0.549694 | tig0001957:+7516 | Msa1338270:CDS |
| ATACTCATTTACTTGTTCAA+CGG | 0.551544 | tig0001957:-9295 | Msa1338270:intergenic |
| ACACTCTTGATGAGATATCA+AGG | 0.551861 | tig0001957:+7068 | Msa1338270:CDS |
| TGCTACTGTCATTACTGGCA+AGG | 0.552377 | tig0001957:+9578 | Msa1338270:CDS |
| GGCTTTCCTACATTCCGGTA+GGG | 0.553142 | tig0001957:+7561 | Msa1338270:CDS |
| AATGCCAATCTCATAAATGA+AGG | 0.554605 | tig0001957:-7314 | Msa1338270:intergenic |
| TGAAAATGCTAATGAGATCA+GGG | 0.555549 | tig0001957:+9059 | Msa1338270:CDS |
| AATATGAACAAACCCTTTGG+AGG | 0.557140 | tig0001957:+8871 | Msa1338270:CDS |
| AAAGGTGTTAATCCCAAGGA+TGG | 0.557623 | tig0001957:+9611 | Msa1338270:CDS |
| TTACGTATAACCCTGAAAAG+AGG | 0.557684 | tig0001957:+7501 | Msa1338270:CDS |
| ACTTGCTTCTCTAAGCAACT+TGG | 0.558532 | tig0001957:-8752 | Msa1338270:intergenic |
| GTAATTAATGTTGCATCTAG+CGG | 0.559938 | tig0001957:+8619 | Msa1338270:CDS |
| TTTGGATAGAGAAGTGGATG+AGG | 0.562072 | tig0001957:-6813 | Msa1338270:intergenic |
| ATCCTGTTGACGTTTCAAAA+GGG | 0.562414 | tig0001957:+7608 | Msa1338270:CDS |
| GATGGTGGAAGCGATGAAGC+AGG | 0.562975 | tig0001957:-11217 | Msa1338270:intergenic |
| CACAACTAAGGAAATAGATA+GGG | 0.563313 | tig0001957:+6773 | Msa1338270:CDS |
| GTACCGCGGTGAACCTGTAA+AGG | 0.563877 | tig0001957:-6349 | Msa1338270:intergenic |
| ATCCAGAACTGGGTATGGCA+TGG | 0.565866 | tig0001957:-8350 | Msa1338270:intergenic |
| CTCGACCGGTGTTTACGCAT+GGG | 0.565962 | tig0001957:+9763 | Msa1338270:CDS |
| ATATTTCTTAACAACATGAT+GGG | 0.566011 | tig0001957:-9486 | Msa1338270:intergenic |
| GCCATACCCAGTTCTGGATG+AGG | 0.567712 | tig0001957:+8354 | Msa1338270:CDS |
| AATGATGACAGACTTTAAGA+AGG | 0.569325 | tig0001957:+6554 | Msa1338270:CDS |
| ACATGAGGTTAATTGGTGAT+GGG | 0.572524 | tig0001957:+9031 | Msa1338270:CDS |
| ACTTGGAAGCTACTAGCTGA+TGG | 0.574992 | tig0001957:+7848 | Msa1338270:CDS |
| AAGTCTTATTATATGGGATG+AGG | 0.575413 | tig0001957:+8771 | Msa1338270:CDS |
| CGACTACAAGTTAACCACCT+TGG | 0.579924 | tig0001957:+9540 | Msa1338270:CDS |
| ACCTGACCCTACCGGAATGT+AGG | 0.583871 | tig0001957:-7567 | Msa1338270:intergenic |
| TCCACTTCCATAGACGAGGA+TGG | 0.587992 | tig0001957:+6954 | Msa1338270:CDS |
| TGGATTGTATCTCCCTCGAC+CGG | 0.588613 | tig0001957:+9749 | Msa1338270:CDS |
| TAAAGTTCACCTGACCCTAC+CGG | 0.589750 | tig0001957:-7575 | Msa1338270:intergenic |
| TGAAGTCGGTGAGCTTCAGA+GGG | 0.591213 | tig0001957:+11486 | Msa1338270:CDS |
| GTTTCAACATACATGATGCA+TGG | 0.594563 | tig0001957:+6849 | Msa1338270:CDS |
| GACAAAAGGTGTTAATCCCA+AGG | 0.594743 | tig0001957:+9607 | Msa1338270:CDS |
| CGGGAAAACAACATTGAGAG+TGG | 0.596520 | tig0001957:-9871 | Msa1338270:intergenic |
| GCTACTGTCATTACTGGCAA+GGG | 0.598216 | tig0001957:+9579 | Msa1338270:CDS |
| CATGCGTAAACACCGGTCGA+GGG | 0.599267 | tig0001957:-9761 | Msa1338270:intergenic |
| TACGATAATGAAATCAGTTG+AGG | 0.601021 | tig0001957:+8495 | Msa1338270:CDS |
| ATGACAATCAACAAGAGTCA+GGG | 0.602688 | tig0001957:+9708 | Msa1338270:CDS |
| CATAAAAGAATATGTGCATG+TGG | 0.606495 | tig0001957:-6726 | Msa1338270:intergenic |
| TTCAAGTTCGCAGCTCCGCA+AGG | 0.609825 | tig0001957:-6873 | Msa1338270:intergenic |
| TAATCTATGGCATAACTGCA+AGG | 0.611096 | tig0001957:+8990 | Msa1338270:CDS |
| GCTTGTAGCGGATTGTCGCA+TGG | 0.611328 | tig0001957:-9180 | Msa1338270:intergenic |
| TAGTCTTCATCAGATTTGCA+AGG | 0.612014 | tig0001957:-9369 | Msa1338270:intergenic |
| TATAATGAGAGTTGTAGATG+AGG | 0.615331 | tig0001957:+8846 | Msa1338270:CDS |
| CGTTTCAAAAGGGTTGTCAG+GGG | 0.617387 | tig0001957:+7618 | Msa1338270:CDS |
| GAACCGGAAAGACCTTTATG+TGG | 0.620092 | tig0001957:+8557 | Msa1338270:CDS |
| AGAAGAAGGTGATGGTGTGA+TGG | 0.620878 | tig0001957:+11609 | Msa1338270:CDS |
| GATGAAGACTACGATATCCA+AGG | 0.621845 | tig0001957:+9381 | Msa1338270:CDS |
| TGCAACTTTGGATAGAGAAG+TGG | 0.622930 | tig0001957:-6819 | Msa1338270:intergenic |
| GGTTTCGCCGGAATTGATGG+TGG | 0.623601 | tig0001957:-11232 | Msa1338270:intergenic |
| GGTGTTAGCGTGATCAAGAA+CGG | 0.624181 | tig0001957:+7005 | Msa1338270:CDS |
| GAGATTGGCATTGCATCTCG+AGG | 0.624845 | tig0001957:+7325 | Msa1338270:CDS |
| ACCGTAGAGTTTCAAAAGAG+GGG | 0.626592 | tig0001957:+6699 | Msa1338270:CDS |
| CAGGTGAACTTTACTATATG+CGG | 0.627250 | tig0001957:+7585 | Msa1338270:CDS |
| AGATTCCACTTCCATAGACG+AGG | 0.627356 | tig0001957:+6950 | Msa1338270:CDS |
| TACATGATGCATGGACCTTG+CGG | 0.627971 | tig0001957:+6858 | Msa1338270:CDS |
| AACTATGACAAAGATAAGCA+AGG | 0.628948 | tig0001957:+8415 | Msa1338270:CDS |
| AACTGCCCATGCGTAAACAC+CGG | 0.630367 | tig0001957:-9768 | Msa1338270:intergenic |
| CCGGTGGTGGAAAGTGAAGT+CGG | 0.630777 | tig0001957:+11472 | Msa1338270:intron |
| TAACAACATGATGGGAACGC+CGG | 0.632283 | tig0001957:-9478 | Msa1338270:intergenic |
| CTATTTAAATATGTCAACAA+AGG | 0.635307 | tig0001957:+7137 | Msa1338270:CDS |
| ACATTGAGAGTGGAGGTGCA+TGG | 0.637046 | tig0001957:-9861 | Msa1338270:intergenic |
| CCGTAGAGTTTCAAAAGAGG+GGG | 0.638206 | tig0001957:+6700 | Msa1338270:CDS |
| AAATCAGTTGAGGCTCAGGA+TGG | 0.640551 | tig0001957:+8505 | Msa1338270:CDS |
| TGTTCAACGGAGTCAAGAGT+AGG | 0.642064 | tig0001957:-9282 | Msa1338270:intergenic |
| ACAGTGCCTCATCCAGAACT+GGG | 0.644353 | tig0001957:-8360 | Msa1338270:intergenic |
| ATACCGTAGAGTTTCAAAAG+AGG | 0.647997 | tig0001957:+6697 | Msa1338270:CDS |
| AAGTCGGTGAGCTTCAGAGG+GGG | 0.648098 | tig0001957:+11488 | Msa1338270:CDS |
| GACATGGTTGCAGATGAAGA+TGG | 0.654120 | tig0001957:+9117 | Msa1338270:CDS |
| TCATTATATCACGCATAGTG+CGG | 0.657882 | tig0001957:-8831 | Msa1338270:intergenic |
| GCAAATAGGAAATGGTGACA+TGG | 0.658221 | tig0001957:+9101 | Msa1338270:CDS |
| AAATCAACCAATGCTTGTAG+CGG | 0.660237 | tig0001957:-9192 | Msa1338270:intergenic |
| CTTACCTTGTGACCTAATGG+TGG | 0.661537 | tig0001957:-8593 | Msa1338270:intergenic |
| AGATTGGCATTGCATCTCGA+GGG | 0.667016 | tig0001957:+7326 | Msa1338270:CDS |
| TCTCTATCCAAAGTTGCACA+TGG | 0.668703 | tig0001957:+6824 | Msa1338270:CDS |
| GAATTCTATATGCAAGACGA+AGG | 0.668830 | tig0001957:+7870 | Msa1338270:CDS |
| TCTGCCACCATTAGGTCACA+AGG | 0.669263 | tig0001957:+8589 | Msa1338270:CDS |
| GCTTCTCTATTGTTGCCTGG+AGG | 0.669865 | tig0001957:+8646 | Msa1338270:CDS |
| TGACAATCAACAAGAGTCAG+GGG | 0.672702 | tig0001957:+9709 | Msa1338270:CDS |
| GCAAACCAACAATACAGTGA+GGG | 0.672757 | tig0001957:+7443 | Msa1338270:CDS |
| ACAACGTACCTATTGTCCAA+AGG | 0.679723 | tig0001957:-7032 | Msa1338270:intergenic |
| GAGCGTCTTGGATATTCCAG+AGG | 0.699861 | tig0001957:+9143 | Msa1338270:CDS |
| GAAAACAACATTGAGAGTGG+AGG | 0.701587 | tig0001957:-9868 | Msa1338270:intergenic |
| TGCAAACCAACAATACAGTG+AGG | 0.709736 | tig0001957:+7442 | Msa1338270:CDS |
| GTTCCAATAAAAGCATCACG+TGG | 0.713104 | tig0001957:-11633 | None:intergenic |
| CAATTATTAAACATGTACCG+CGG | 0.716281 | tig0001957:-6363 | None:intergenic |
| AAATGGGAGACAATGACCCG+CGG | 0.717044 | tig0001957:+6295 | None:intergenic |
| ATTCTCCAAGATGCTTCACA+CGG | 0.720309 | tig0001957:-7263 | Msa1338270:intergenic |
| TTATTGTAATGAATAGATCG+GGG | 0.736331 | tig0001957:-6422 | Msa1338270:intergenic |
| GAAGTCGGTGAGCTTCAGAG+GGG | 0.737246 | tig0001957:+11487 | Msa1338270:CDS |
| TGTAGCGGATTGTCGCATGG+AGG | 0.744456 | tig0001957:-9177 | Msa1338270:intergenic |
| GAAGCTTCTAGATCACAGAG+TGG | 0.760956 | tig0001957:+7749 | Msa1338270:CDS |
| ATTCCTTTACAGGTTCACCG+CGG | 0.761260 | tig0001957:+6346 | Msa1338270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTATTAAAACTGTTAA+TGG | + | tig0001957:7644-7663 | Msa1338270:CDS | 15.0% |
| !! | AAATAAATATTGCAGATTTA+CGG | + | tig0001957:8239-8258 | Msa1338270:intron | 15.0% |
| !! | ATTTATGTCATTCAAAAATT+CGG | - | tig0001957:9421-9440 | Msa1338270:intergenic | 15.0% |
| !!! | ATGACATCTTTAATTTTTAA+AGG | + | tig0001957:10203-10222 | Msa1338270:intron | 15.0% |
| !!! | TTTTTAAGAGATTCATAATA+TGG | + | tig0001957:10263-10282 | Msa1338270:intron | 15.0% |
| !!! | TCTATTTTAATTTAGACTAT+TGG | + | tig0001957:10603-10622 | Msa1338270:intron | 15.0% |
| !! | ATTTCAATAAAAAACGAATT+GGG | - | tig0001957:11286-11305 | Msa1338270:intergenic | 15.0% |
| !! | AATTTCAATAAAAAACGAAT+TGG | - | tig0001957:11287-11306 | Msa1338270:intergenic | 15.0% |
| !!! | TCGTTTTTTATTGAAATTTT+CGG | + | tig0001957:11289-11308 | Msa1338270:intron | 15.0% |
| !! | AGTTATTGTAATGAATAGAT+CGG | - | tig0001957:6427-6446 | Msa1338270:intergenic | 20.0% |
| !! | AAAACTCTACAAATAATATC+CGG | - | tig0001957:6516-6535 | Msa1338270:intergenic | 20.0% |
| !! | TTAATATTTACATATATCGC+AGG | + | tig0001957:6669-6688 | Msa1338270:intron | 20.0% |
| !!! | TTATCTCTTCTTTTATAAAC+CGG | - | tig0001957:6984-7003 | Msa1338270:intergenic | 20.0% |
| !! | GTTTATAAAAGAAGAGATAA+TGG | + | tig0001957:6984-7003 | Msa1338270:CDS | 20.0% |
| !! | CTATTTAAATATGTCAACAA+AGG | + | tig0001957:7137-7156 | Msa1338270:CDS | 20.0% |
| !!! | TGAATGAAATTTTTATAACC+TGG | - | tig0001957:7908-7927 | Msa1338270:intergenic | 20.0% |
| !! | GAAAATGCAATATCTTTAAA+GGG | - | tig0001957:8044-8063 | Msa1338270:intergenic | 20.0% |
| !! | TGAAAATGCAATATCTTTAA+AGG | - | tig0001957:8045-8064 | Msa1338270:intergenic | 20.0% |
| !!! | TTAAAGATATTGCATTTTCA+TGG | + | tig0001957:8045-8064 | Msa1338270:intron | 20.0% |
| !!! | TTCTATTTTTTGTATGGATA+TGG | + | tig0001957:8532-8551 | Msa1338270:CDS | 20.0% |
| !!! | GATTTATCATTGATTTTCAA+TGG | - | tig0001957:8700-8719 | Msa1338270:intergenic | 20.0% |
| !! | ATATTTCTTAACAACATGAT+GGG | - | tig0001957:9489-9508 | Msa1338270:intergenic | 20.0% |
| !! | AATATTTCTTAACAACATGA+TGG | - | tig0001957:9490-9509 | Msa1338270:intergenic | 20.0% |
| !!! | TTTGTAGTCATATTTTTATC+AGG | + | tig0001957:9908-9927 | Msa1338270:intron | 20.0% |
| !! | CAAAAAGAAACAAATGTATT+TGG | - | tig0001957:9998-10017 | Msa1338270:intergenic | 20.0% |
| !!! | TTTCTTTTTGTAGATAATCT+TGG | + | tig0001957:10008-10027 | Msa1338270:intron | 20.0% |
| !! | GGAAATAACAGTAATAAAAA+AGG | + | tig0001957:10555-10574 | Msa1338270:intron | 20.0% |
| !! | ATAACAGTAATAAAAAAGGA+TGG | + | tig0001957:10559-10578 | Msa1338270:intron | 20.0% |
| !! | ACTATTGGAAAATCAATTTA+AGG | + | tig0001957:10618-10637 | Msa1338270:intron | 20.0% |
| !! | CTATTGAATCAAAAAGAAAA+TGG | + | tig0001957:10742-10761 | Msa1338270:intron | 20.0% |
| !!! | CTATATTTCAATTTTTTGCA+GGG | + | tig0001957:10804-10823 | Msa1338270:intron | 20.0% |
| !!! | TATATTTCAATTTTTTGCAG+GGG | + | tig0001957:10805-10824 | Msa1338270:intron | 20.0% |
| !! | TAAGTGAAGCTATATATATA+TGG | + | tig0001957:10898-10917 | Msa1338270:intron | 20.0% |
| ! | TTATTGTAATGAATAGATCG+GGG | - | tig0001957:6425-6444 | Msa1338270:intergenic | 25.0% |
| ! | GTTATTGTAATGAATAGATC+GGG | - | tig0001957:6426-6445 | Msa1338270:intergenic | 25.0% |
| !! | CAATAACTTGCAATCAAAAT+TGG | + | tig0001957:6439-6458 | Msa1338270:CDS | 25.0% |
| !! | CATATTCTTTTATGGTTAGA+AGG | + | tig0001957:6735-6754 | Msa1338270:CDS | 25.0% |
| ! | TAACGCTTAATTTCATCAAT+TGG | - | tig0001957:7221-7240 | Msa1338270:intergenic | 25.0% |
| ! | TGTTGTGAAATATCATCAAT+CGG | + | tig0001957:7391-7410 | Msa1338270:CDS | 25.0% |
| !!! | GGTTATACGTAAATTTTGAT+GGG | - | tig0001957:7493-7512 | Msa1338270:intergenic | 25.0% |
| ! | AAATTCTATGTCATAGCATA+AGG | + | tig0001957:8094-8113 | Msa1338270:intron | 25.0% |
| ! | AACAATAGCAAATAGATGAT+AGG | + | tig0001957:8133-8152 | Msa1338270:intron | 25.0% |
| ! | GAAAAGTTGTTAATGTGTAA+TGG | + | tig0001957:8304-8323 | Msa1338270:CDS | 25.0% |
| ! | AGCAATGAATTTATTTGCTT+GGG | - | tig0001957:8386-8405 | Msa1338270:intergenic | 25.0% |
| !!! | TATTTTTTGTATGGATATGG+TGG | + | tig0001957:8535-8554 | Msa1338270:CDS | 25.0% |
| !!! | AGAAGCAAGTCTTATTATAT+GGG | + | tig0001957:8765-8784 | Msa1338270:CDS | 25.0% |
| ! | CTTCATTATATCACGTTTAT+TGG | - | tig0001957:8953-8972 | Msa1338270:intergenic | 25.0% |
| ! | CTATTAACTCTTCTAATCTA+TGG | + | tig0001957:8977-8996 | Msa1338270:CDS | 25.0% |
| ! | TAAAGCTTACAAAAAACATG+AGG | + | tig0001957:9016-9035 | Msa1338270:CDS | 25.0% |
| ! | ACAAAAAACATGAGGTTAAT+TGG | + | tig0001957:9024-9043 | Msa1338270:CDS | 25.0% |
| ! | TCAATGTTATTAACAATACC+TGG | - | tig0001957:9225-9244 | Msa1338270:intergenic | 25.0% |
| ! | ATACTCATTTACTTGTTCAA+CGG | - | tig0001957:9298-9317 | Msa1338270:intergenic | 25.0% |
| ! | TTGAATGACATAAATTGTTC+TGG | + | tig0001957:9426-9445 | Msa1338270:CDS | 25.0% |
| ! | AGAAATATTGATCAAGCAAA+TGG | + | tig0001957:9501-9520 | Msa1338270:CDS | 25.0% |
| !!! | TAATGATATTTTTTCCAAGG+TGG | - | tig0001957:9557-9576 | Msa1338270:intergenic | 25.0% |
| !!! | CAGTAATGATATTTTTTCCA+AGG | - | tig0001957:9560-9579 | Msa1338270:intergenic | 25.0% |
| ! | TGTCTTCTTGAAAACTTAAA+GGG | - | tig0001957:9663-9682 | Msa1338270:intergenic | 25.0% |
| ! | TTGTCTTCTTGAAAACTTAA+AGG | - | tig0001957:9664-9683 | Msa1338270:intergenic | 25.0% |
| !!! | ATGTTGATTTTAGATGAAGA+TGG | + | tig0001957:9834-9853 | Msa1338270:CDS | 25.0% |
| ! | TTTACACTTCATTGTCAATT+TGG | + | tig0001957:9947-9966 | Msa1338270:intron | 25.0% |
| ! | TTACACTTCATTGTCAATTT+GGG | + | tig0001957:9948-9967 | Msa1338270:intron | 25.0% |
| !!! | ATAATCTTGGTGCTAAATAA+AGG | + | tig0001957:10021-10040 | Msa1338270:intron | 25.0% |
| ! | TCCATAACTCAGATTTATTA+TGG | - | tig0001957:10063-10082 | Msa1338270:intergenic | 25.0% |
| ! | AAGCAACAAAAAAAAGTAGT+CGG | - | tig0001957:10105-10124 | Msa1338270:intergenic | 25.0% |
| !!! | TTTTAAAGGAGTTCGTTATA+TGG | + | tig0001957:10217-10236 | Msa1338270:intron | 25.0% |
| ! | TAAGAGATTCATAATATGGT+TGG | + | tig0001957:10267-10286 | Msa1338270:intron | 25.0% |
| ! | TGTATTATATGTTGTTACGT+CGG | + | tig0001957:10299-10318 | Msa1338270:intron | 25.0% |
| !! | GTACGATTGATTTAAATTAG+AGG | - | tig0001957:10455-10474 | Msa1338270:intergenic | 25.0% |
| !!! | GCTATATTTCAATTTTTTGC+AGG | + | tig0001957:10803-10822 | Msa1338270:intron | 25.0% |
| !!! | ATATTTCAATTTTTTGCAGG+GGG | + | tig0001957:10806-10825 | Msa1338270:intron | 25.0% |
| ! | ATATGAGTAAAACTAGCAAA+TGG | - | tig0001957:10863-10882 | Msa1338270:intergenic | 25.0% |
| ! | ACCTTTAGATTAAAGATAGA+TGG | + | tig0001957:10977-10996 | Msa1338270:intron | 25.0% |
| ! | AAATTCATTTGTGCTTTCTA+AGG | - | tig0001957:11133-11152 | Msa1338270:intergenic | 25.0% |
| !! | TTAGAAAGCACAAATGAATT+TGG | + | tig0001957:11132-11151 | Msa1338270:intron | 25.0% |
| ! | AAAAAAATCAACGATGATGA+GGG | + | tig0001957:11529-11548 | Msa1338270:CDS | 25.0% |
| CAATTATTAAACATGTACCG+CGG | - | tig0001957:6366-6385 | Msa1338270:intergenic | 30.0% | |
| TAATAATTGCCAAGATGCAA+TGG | + | tig0001957:6377-6396 | Msa1338270:CDS | 30.0% | |
| TACAAATTACCATTGCATCT+TGG | - | tig0001957:6389-6408 | Msa1338270:intergenic | 30.0% | |
| ! | ATGCAATGGTAATTTGTAAG+AGG | + | tig0001957:6391-6410 | Msa1338270:CDS | 30.0% |
| ! | ATGGTAATTTGTAAGAGGTT+TGG | + | tig0001957:6396-6415 | Msa1338270:CDS | 30.0% |
| ! | AAAGACTTTGTTTCAGAGAA+AGG | + | tig0001957:6471-6490 | Msa1338270:CDS | 30.0% |
| ! | AATGATGACAGACTTTAAGA+AGG | + | tig0001957:6554-6573 | Msa1338270:CDS | 30.0% |
| CATAAAAGAATATGTGCATG+TGG | - | tig0001957:6729-6748 | Msa1338270:intergenic | 30.0% | |
| ! | CACATGCACATATTCTTTTA+TGG | + | tig0001957:6727-6746 | Msa1338270:CDS | 30.0% |
| ACACAACTAAGGAAATAGAT+AGG | + | tig0001957:6772-6791 | Msa1338270:CDS | 30.0% | |
| CACAACTAAGGAAATAGATA+GGG | + | tig0001957:6773-6792 | Msa1338270:CDS | 30.0% | |
| ATGCATCATGTATGTTGAAA+CGG | - | tig0001957:6850-6869 | Msa1338270:intergenic | 30.0% | |
| GTGGAATCTAAAAACTTCTT+TGG | - | tig0001957:6939-6958 | Msa1338270:intergenic | 30.0% | |
| TGTTTGATATCCATGAGAAA+TGG | + | tig0001957:7291-7310 | Msa1338270:CDS | 30.0% | |
| AATGCCAATCTCATAAATGA+AGG | - | tig0001957:7317-7336 | Msa1338270:intergenic | 30.0% | |
| ! | GGGTTATACGTAAATTTTGA+TGG | - | tig0001957:7494-7513 | Msa1338270:intergenic | 30.0% |
| !!! | ATCTGAAAACCTTTTTTCCT+TGG | - | tig0001957:7536-7555 | Msa1338270:intergenic | 30.0% |
| ! | AGGAAAAAAGGTTTTCAGAT+TGG | + | tig0001957:7536-7555 | Msa1338270:CDS | 30.0% |
| ! | AAAAAGGTTTTCAGATTGGT+AGG | + | tig0001957:7540-7559 | Msa1338270:CDS | 30.0% |
| AATGACAAAGAGTTCATTGA+TGG | + | tig0001957:7719-7738 | Msa1338270:CDS | 30.0% | |
| ATAATGTATGGAAAGCAACT+TGG | + | tig0001957:7831-7850 | Msa1338270:CDS | 30.0% | |
| ! | TTTTATAACCTGGAATGTTG+AGG | - | tig0001957:7898-7917 | Msa1338270:intergenic | 30.0% |
| CGTTTACAAAGCTACTAAAA+AGG | - | tig0001957:7970-7989 | Msa1338270:intergenic | 30.0% | |
| TACAGAACATACAAATGTCA+TGG | - | tig0001957:8220-8239 | Msa1338270:intergenic | 30.0% | |
| ! | AGATTTTGCAAATCACTATC+AGG | - | tig0001957:8268-8287 | Msa1338270:intergenic | 30.0% |
| ! | ACAACTTTTCTATCTCAATG+AGG | - | tig0001957:8294-8313 | Msa1338270:intergenic | 30.0% |
| CAGCAATGAATTTATTTGCT+TGG | - | tig0001957:8387-8406 | Msa1338270:intergenic | 30.0% | |
| AACTATGACAAAGATAAGCA+AGG | + | tig0001957:8415-8434 | Msa1338270:CDS | 30.0% | |
| TACGATAATGAAATCAGTTG+AGG | + | tig0001957:8495-8514 | Msa1338270:CDS | 30.0% | |
| !!! | GGTCAGTTCTATTTTTTGTA+TGG | + | tig0001957:8526-8545 | Msa1338270:CDS | 30.0% |
| AGATAATGTCTTCCACATAA+AGG | - | tig0001957:8572-8591 | Msa1338270:intergenic | 30.0% | |
| GTAATTAATGTTGCATCTAG+CGG | + | tig0001957:8619-8638 | Msa1338270:CDS | 30.0% | |
| TGGTATACAGAAAGTAGAAT+GGG | - | tig0001957:8680-8699 | Msa1338270:intergenic | 30.0% | |
| ATGGTATACAGAAAGTAGAA+TGG | - | tig0001957:8681-8700 | Msa1338270:intergenic | 30.0% | |
| !! | GAGAAGCAAGTCTTATTATA+TGG | + | tig0001957:8764-8783 | Msa1338270:CDS | 30.0% |
| !! | AAGTCTTATTATATGGGATG+AGG | + | tig0001957:8771-8790 | Msa1338270:CDS | 30.0% |
| TATAATGAGAGTTGTAGATG+AGG | + | tig0001957:8846-8865 | Msa1338270:CDS | 30.0% | |
| GATAATATGAACAAACCCTT+TGG | + | tig0001957:8868-8887 | Msa1338270:CDS | 30.0% | |
| ATAACAACTTTACCTCCAAA+GGG | - | tig0001957:8886-8905 | Msa1338270:intergenic | 30.0% | |
| AATAACAACTTTACCTCCAA+AGG | - | tig0001957:8887-8906 | Msa1338270:intergenic | 30.0% | |
| !!! | TTATTGGCTTTTCTAATGAC+AGG | - | tig0001957:8937-8956 | Msa1338270:intergenic | 30.0% |
| TGAAAATGCTAATGAGATCA+GGG | + | tig0001957:9059-9078 | Msa1338270:CDS | 30.0% | |
| !! | GCAAAATGGATTTTGCAAAT+AGG | + | tig0001957:9087-9106 | Msa1338270:CDS | 30.0% |
| ! | TGGATTTTGCAAATAGGAAA+TGG | + | tig0001957:9093-9112 | Msa1338270:CDS | 30.0% |
| !! | TTGGTTGATTTTGTTTATCC+AGG | + | tig0001957:9204-9223 | Msa1338270:CDS | 30.0% |
| TGACAATCGAAGTATATTTG+AGG | + | tig0001957:9242-9261 | Msa1338270:CDS | 30.0% | |
| !! | TATGTTTTGTCACTGATTGA+AGG | + | tig0001957:9315-9334 | Msa1338270:CDS | 30.0% |
| !! | ATGTTTTGTCACTGATTGAA+GGG | + | tig0001957:9316-9335 | Msa1338270:CDS | 30.0% |
| TATGTCATTCAAAAATTCGG+TGG | - | tig0001957:9418-9437 | Msa1338270:intergenic | 30.0% | |
| TTCAATATCAATCTGTGGTT+TGG | - | tig0001957:9456-9475 | Msa1338270:intergenic | 30.0% | |
| CACAGATTGATATTGAAAAC+CGG | + | tig0001957:9459-9478 | Msa1338270:CDS | 30.0% | |
| !! | GTTTTCAAGAAGACAATTTC+CGG | + | tig0001957:9668-9687 | Msa1338270:CDS | 30.0% |
| ATAGCAAAACACAATGAAAC+CGG | - | tig0001957:9690-9709 | Msa1338270:intergenic | 30.0% | |
| TACAAATTAGAAAACACCTC+CGG | - | tig0001957:9894-9913 | Msa1338270:intergenic | 30.0% | |
| TGGATGTTACGAATGTATAT+TGG | - | tig0001957:9978-9997 | Msa1338270:intergenic | 30.0% | |
| GCCATAATAAATCTGAGTTA+TGG | + | tig0001957:10059-10078 | Msa1338270:intron | 30.0% | |
| TCTTCATTGTCATTGTTCAA+GGG | + | tig0001957:10138-10157 | Msa1338270:intron | 30.0% | |
| AGTAATAAAAAAGGATGGAG+AGG | + | tig0001957:10564-10583 | Msa1338270:intron | 30.0% | |
| ! | TCAAAAAGAAAATGGTGTCA+AGG | + | tig0001957:10750-10769 | Msa1338270:intron | 30.0% |
| !!! | TATTTCAATTTTTTGCAGGG+GGG | + | tig0001957:10807-10826 | Msa1338270:intron | 30.0% |
| GTGAAGCTATATATATATGG+AGG | + | tig0001957:10901-10920 | Msa1338270:intron | 30.0% | |
| GCCATCTATCTTTAATCTAA+AGG | - | tig0001957:10981-11000 | Msa1338270:intergenic | 30.0% | |
| TTCGATTGTTAAAATTGACG+TGG | + | tig0001957:11345-11364 | Msa1338270:intron | 30.0% | |
| TCGATTGTTAAAATTGACGT+GGG | + | tig0001957:11346-11365 | Msa1338270:intron | 30.0% | |
| ! | TGAAGAACGGTTTCTTTTAT+GGG | + | tig0001957:11393-11412 | Msa1338270:intron | 30.0% |
| !!! | CATCATCGTTGATTTTTTTC+CGG | - | tig0001957:11528-11547 | Msa1338270:intergenic | 30.0% |
| GAAAAAAATCAACGATGATG+AGG | + | tig0001957:11528-11547 | Msa1338270:CDS | 30.0% | |
| AAAAAATCAACGATGATGAG+GGG | + | tig0001957:11530-11549 | Msa1338270:CDS | 30.0% | |
| ATACTTCCTGATTCCTTTAC+AGG | + | tig0001957:6336-6355 | Msa1338270:CDS | 35.0% | |
| TTTAAGAAGGAGCAGATGTT+TGG | + | tig0001957:6567-6586 | Msa1338270:CDS | 35.0% | |
| TTAAGAAGGAGCAGATGTTT+GGG | + | tig0001957:6568-6587 | Msa1338270:CDS | 35.0% | |
| ATACCGTAGAGTTTCAAAAG+AGG | + | tig0001957:6697-6716 | Msa1338270:CDS | 35.0% | |
| TACCGTAGAGTTTCAAAAGA+GGG | + | tig0001957:6698-6717 | Msa1338270:CDS | 35.0% | |
| GTTTCAACATACATGATGCA+TGG | + | tig0001957:6849-6868 | Msa1338270:CDS | 35.0% | |
| TTGAATTCACCTTGCATGAA+GGG | + | tig0001957:6891-6910 | Msa1338270:CDS | 35.0% | |
| !! | ATCAAGAGTGTTGGATTGTA+AGG | - | tig0001957:7059-7078 | Msa1338270:intergenic | 35.0% |
| ! | TGATATCTCATCAAGAGTGT+TGG | - | tig0001957:7068-7087 | Msa1338270:intergenic | 35.0% |
| ACACTCTTGATGAGATATCA+AGG | + | tig0001957:7068-7087 | Msa1338270:CDS | 35.0% | |
| !!! | CTGCTTGTTTTTTAATGTGG+AGG | - | tig0001957:7178-7197 | Msa1338270:intergenic | 35.0% |
| CTCCACATTAAAAAACAAGC+AGG | + | tig0001957:7176-7195 | Msa1338270:CDS | 35.0% | |
| !!! | CTCCTGCTTGTTTTTTAATG+TGG | - | tig0001957:7181-7200 | Msa1338270:intergenic | 35.0% |
| TAAAAAACAAGCAGGAGACA+AGG | + | tig0001957:7184-7203 | Msa1338270:CDS | 35.0% | |
| TAAATGAAGGCCATTTCTCA+TGG | - | tig0001957:7304-7323 | Msa1338270:intergenic | 35.0% | |
| ATGGCCTTCATTTATGAGAT+TGG | + | tig0001957:7310-7329 | Msa1338270:CDS | 35.0% | |
| TCAACAATGTGTTAGGTTCA+AGG | + | tig0001957:7349-7368 | Msa1338270:CDS | 35.0% | |
| ! | ATCGGTTCCAACAATGTTTA+TGG | + | tig0001957:7409-7428 | Msa1338270:CDS | 35.0% |
| TTCCAACAATGTTTATGGCA+TGG | + | tig0001957:7414-7433 | Msa1338270:CDS | 35.0% | |
| AACCATGCCATAAACATTGT+TGG | - | tig0001957:7419-7438 | Msa1338270:intergenic | 35.0% | |
| TTACGTATAACCCTGAAAAG+AGG | + | tig0001957:7501-7520 | Msa1338270:CDS | 35.0% | |
| ATAACCCTGAAAAGAGGATA+TGG | + | tig0001957:7507-7526 | Msa1338270:CDS | 35.0% | |
| ATATGGCATCCAAGGAAAAA+AGG | + | tig0001957:7524-7543 | Msa1338270:CDS | 35.0% | |
| CAGGTGAACTTTACTATATG+CGG | + | tig0001957:7585-7604 | Msa1338270:CDS | 35.0% | |
| ATCCTGTTGACGTTTCAAAA+GGG | + | tig0001957:7608-7627 | Msa1338270:CDS | 35.0% | |
| !! | TGCTTCATGTTTTGTTCGTT+AGG | + | tig0001957:7777-7796 | Msa1338270:CDS | 35.0% |
| ! | GTTGCTTTCCATACATTATC+AGG | - | tig0001957:7830-7849 | Msa1338270:intergenic | 35.0% |
| GAATTCTATATGCAAGACGA+AGG | + | tig0001957:7870-7889 | Msa1338270:CDS | 35.0% | |
| ACGAAGTAAGTTGTAGTATG+CGG | + | tig0001957:7987-8006 | Msa1338270:intron | 35.0% | |
| ! | TATCTTTAAAGGGCATGTCA+TGG | - | tig0001957:8034-8053 | Msa1338270:intergenic | 35.0% |
| ! | ATCAGTGAGTTTTCGAAGAA+GGG | - | tig0001957:8455-8474 | Msa1338270:intergenic | 35.0% |
| AATCTTACCTTGTGACCTAA+TGG | - | tig0001957:8599-8618 | Msa1338270:intergenic | 35.0% | |
| AAACAGAATCTGTGCATCAT+AGG | - | tig0001957:8799-8818 | Msa1338270:intergenic | 35.0% | |
| TCATTATATCACGCATAGTG+CGG | - | tig0001957:8834-8853 | Msa1338270:intergenic | 35.0% | |
| AATATGAACAAACCCTTTGG+AGG | + | tig0001957:8871-8890 | Msa1338270:CDS | 35.0% | |
| ! | GGAGGTAAAGTTGTTATTCT+TGG | + | tig0001957:8889-8908 | Msa1338270:CDS | 35.0% |
| ! | GGTAAAGTTGTTATTCTTGG+TGG | + | tig0001957:8892-8911 | Msa1338270:CDS | 35.0% |
| TTATTCTTGGTGGAGATTTC+AGG | + | tig0001957:8902-8921 | Msa1338270:CDS | 35.0% | |
| TAATCTATGGCATAACTGCA+AGG | + | tig0001957:8990-9009 | Msa1338270:CDS | 35.0% | |
| AACATGAGGTTAATTGGTGA+TGG | + | tig0001957:9030-9049 | Msa1338270:CDS | 35.0% | |
| ! | ACATGAGGTTAATTGGTGAT+GGG | + | tig0001957:9031-9050 | Msa1338270:CDS | 35.0% |
| GTGAAAATGCTAATGAGATC+AGG | + | tig0001957:9058-9077 | Msa1338270:CDS | 35.0% | |
| AGATCAGGGAATTTGCAAAA+TGG | + | tig0001957:9073-9092 | Msa1338270:CDS | 35.0% | |
| AAATCAACCAATGCTTGTAG+CGG | - | tig0001957:9195-9214 | Msa1338270:intergenic | 35.0% | |
| TCGAAGTATATTTGAGGAGA+AGG | + | tig0001957:9248-9267 | Msa1338270:CDS | 35.0% | |
| !! | TGTTTTGTCACTGATTGAAG+GGG | + | tig0001957:9317-9336 | Msa1338270:CDS | 35.0% |
| ! | ATCAGATTTGCAAGGAGTAT+CGG | - | tig0001957:9364-9383 | Msa1338270:intergenic | 35.0% |
| TAGTCTTCATCAGATTTGCA+AGG | - | tig0001957:9372-9391 | Msa1338270:intergenic | 35.0% | |
| ! | CGGTTTTCAATATCAATCTG+TGG | - | tig0001957:9461-9480 | Msa1338270:intergenic | 35.0% |
| CAAGCAAATGGCTTATGTAA+TGG | + | tig0001957:9513-9532 | Msa1338270:CDS | 35.0% | |
| ATTACTGCTACTGTCATTAC+TGG | + | tig0001957:9573-9592 | Msa1338270:CDS | 35.0% | |
| TATGACAATCAACAAGAGTC+AGG | + | tig0001957:9707-9726 | Msa1338270:CDS | 35.0% | |
| ATGACAATCAACAAGAGTCA+GGG | + | tig0001957:9708-9727 | Msa1338270:CDS | 35.0% | |
| !! | AGTTTTATGTAGCTGTTTCG+AGG | + | tig0001957:9787-9806 | Msa1338270:CDS | 35.0% |
| !! | GTTTTATGTAGCTGTTTCGA+GGG | + | tig0001957:9788-9807 | Msa1338270:CDS | 35.0% |
| ! | CATTTTCAACCCTTTCTTTG+TGG | - | tig0001957:9817-9836 | Msa1338270:intergenic | 35.0% |
| ACAAATTAGAAAACACCTCC+GGG | - | tig0001957:9893-9912 | Msa1338270:intergenic | 35.0% | |
| GTCTTCATTGTCATTGTTCA+AGG | + | tig0001957:10137-10156 | Msa1338270:intron | 35.0% | |
| ATTATATGTTGTTACGTCGG+TGG | + | tig0001957:10302-10321 | Msa1338270:intron | 35.0% | |
| ACGTCACCAAATAGATTTGT+TGG | + | tig0001957:10349-10368 | Msa1338270:intron | 35.0% | |
| ATCATGACATGCTTCATTCA+TGG | - | tig0001957:10531-10550 | Msa1338270:intergenic | 35.0% | |
| AATGAAGCATGTCATGATGA+TGG | + | tig0001957:10533-10552 | Msa1338270:intron | 35.0% | |
| ATGAAGCATGTCATGATGAT+GGG | + | tig0001957:10534-10553 | Msa1338270:intron | 35.0% | |
| CCTACAATTATAGCTTGGTT+GGG | - | tig0001957:10838-10857 | Msa1338270:intergenic | 35.0% | |
| CCAACCAAGCTATAATTGTA+GGG | + | tig0001957:10836-10855 | Msa1338270:intron | 35.0% | |
| ! | ATGCACATGTGTTGCTAAAA+TGG | - | tig0001957:11019-11038 | Msa1338270:intergenic | 35.0% |
| ! | TTTCTAAGGAGAGATGTAGT+GGG | - | tig0001957:11119-11138 | Msa1338270:intergenic | 35.0% |
| ! | GTGAAGAACGGTTTCTTTTA+TGG | + | tig0001957:11392-11411 | Msa1338270:intron | 35.0% |
| ! | TTCTTTTATGGGATTTCCGA+CGG | + | tig0001957:11404-11423 | Msa1338270:intron | 35.0% |
| ! | GCTTTTGAATGAAGAAGAAG+AGG | + | tig0001957:11567-11586 | Msa1338270:CDS | 35.0% |
| ACGAGAGAAAGAAAAGAAGA+AGG | + | tig0001957:11595-11614 | Msa1338270:CDS | 35.0% | |
| GAAAGAAAAGAAGAAGGTGA+TGG | + | tig0001957:11601-11620 | Msa1338270:CDS | 35.0% | |
| ACCGTAGAGTTTCAAAAGAG+GGG | + | tig0001957:6699-6718 | Msa1338270:CDS | 40.0% | |
| CTTAGTTGTGTGCAGTTTGT+TGG | - | tig0001957:6763-6782 | Msa1338270:intergenic | 40.0% | |
| CAACAAACTGCACACAACTA+AGG | + | tig0001957:6761-6780 | Msa1338270:CDS | 40.0% | |
| TTTGGATAGAGAAGTGGATG+AGG | - | tig0001957:6816-6835 | Msa1338270:intergenic | 40.0% | |
| TGCAACTTTGGATAGAGAAG+TGG | - | tig0001957:6822-6841 | Msa1338270:intergenic | 40.0% | |
| TCTCTATCCAAAGTTGCACA+TGG | + | tig0001957:6824-6843 | Msa1338270:CDS | 40.0% | |
| CTTGAATTCACCTTGCATGA+AGG | + | tig0001957:6890-6909 | Msa1338270:CDS | 40.0% | |
| TGAATTCACCTTGCATGAAG+GGG | + | tig0001957:6892-6911 | Msa1338270:CDS | 40.0% | |
| ACAACGTACCTATTGTCCAA+AGG | - | tig0001957:7035-7054 | Msa1338270:intergenic | 40.0% | |
| ATTCTCCAAGATGCTTCACA+CGG | - | tig0001957:7266-7285 | Msa1338270:intergenic | 40.0% | |
| !! | CACTGTATTGTTGGTTTGCA+AGG | - | tig0001957:7442-7461 | Msa1338270:intergenic | 40.0% |
| TGCAAACCAACAATACAGTG+AGG | + | tig0001957:7442-7461 | Msa1338270:CDS | 40.0% | |
| GCAAACCAACAATACAGTGA+GGG | + | tig0001957:7443-7462 | Msa1338270:CDS | 40.0% | |
| ATGGGAATTCAGCATATGTC+AGG | - | tig0001957:7475-7494 | Msa1338270:intergenic | 40.0% | |
| ! | GATGCCATATCCTCTTTTCA+GGG | - | tig0001957:7514-7533 | Msa1338270:intergenic | 40.0% |
| AAAAGAGGATATGGCATCCA+AGG | + | tig0001957:7516-7535 | Msa1338270:CDS | 40.0% | |
| GATCCTGTTGACGTTTCAAA+AGG | + | tig0001957:7607-7626 | Msa1338270:CDS | 40.0% | |
| !!! | AACCCTTTTGAAACGTCAAC+AGG | - | tig0001957:7613-7632 | Msa1338270:intergenic | 40.0% |
| ACGTTTCAAAAGGGTTGTCA+GGG | + | tig0001957:7617-7636 | Msa1338270:CDS | 40.0% | |
| AAGATGCATGTTATGCGCTT+GGG | + | tig0001957:7687-7706 | Msa1338270:CDS | 40.0% | |
| ! | TGCACAAGCCTGATAATGTA+TGG | + | tig0001957:7819-7838 | Msa1338270:CDS | 40.0% |
| AGCATTCATTGCGTAAAGTG+TGG | - | tig0001957:7939-7958 | Msa1338270:intergenic | 40.0% | |
| ! | CATCAGTGAGTTTTCGAAGA+AGG | - | tig0001957:8456-8475 | Msa1338270:intergenic | 40.0% |
| AATGAAATCAGTTGAGGCTC+AGG | + | tig0001957:8501-8520 | Msa1338270:CDS | 40.0% | |
| ! | TTGTATGGATATGGTGGAAC+CGG | + | tig0001957:8541-8560 | Msa1338270:CDS | 40.0% |
| CTTCCACATAAAGGTCTTTC+CGG | - | tig0001957:8563-8582 | Msa1338270:intergenic | 40.0% | |
| AGACATTATCTGCCACCATT+AGG | + | tig0001957:8581-8600 | Msa1338270:CDS | 40.0% | |
| ATTGCTTCTCTATTGTTGCC+TGG | + | tig0001957:8643-8662 | Msa1338270:CDS | 40.0% | |
| ACTTGCTTCTCTAAGCAACT+TGG | - | tig0001957:8755-8774 | Msa1338270:intergenic | 40.0% | |
| GCAAATAGGAAATGGTGACA+TGG | + | tig0001957:9101-9120 | Msa1338270:CDS | 40.0% | |
| GATGAAGACTACGATATCCA+AGG | + | tig0001957:9381-9400 | Msa1338270:CDS | 40.0% | |
| ACTACGATATCCAAGGAGAT+TGG | + | tig0001957:9388-9407 | Msa1338270:CDS | 40.0% | |
| !! | AAGGTGGTTAACTTGTAGTC+GGG | - | tig0001957:9541-9560 | Msa1338270:intergenic | 40.0% |
| !! | CAAGGTGGTTAACTTGTAGT+CGG | - | tig0001957:9542-9561 | Msa1338270:intergenic | 40.0% |
| !! | GACAAAAGGTGTTAATCCCA+AGG | + | tig0001957:9607-9626 | Msa1338270:CDS | 40.0% |
| !! | AAAGGTGTTAATCCCAAGGA+TGG | + | tig0001957:9611-9630 | Msa1338270:CDS | 40.0% |
| ! | GTTAATCCCAAGGATGGATT+TGG | + | tig0001957:9617-9636 | Msa1338270:CDS | 40.0% |
| AGGGAAATCCTGAATCTGTT+GGG | - | tig0001957:9644-9663 | Msa1338270:intergenic | 40.0% | |
| AAGGGAAATCCTGAATCTGT+TGG | - | tig0001957:9645-9664 | Msa1338270:intergenic | 40.0% | |
| TGACAATCAACAAGAGTCAG+GGG | + | tig0001957:9709-9728 | Msa1338270:CDS | 40.0% | |
| GAAAACAACATTGAGAGTGG+AGG | - | tig0001957:9871-9890 | Msa1338270:intergenic | 40.0% | |
| !!! | CACTCTCAATGTTGTTTTCC+CGG | + | tig0001957:9872-9891 | Msa1338270:CDS | 40.0% |
| ACATGCTTCATTCATGGTAG+GGG | - | tig0001957:10525-10544 | Msa1338270:intergenic | 40.0% | |
| GACATGCTTCATTCATGGTA+GGG | - | tig0001957:10526-10545 | Msa1338270:intergenic | 40.0% | |
| TGACATGCTTCATTCATGGT+AGG | - | tig0001957:10527-10546 | Msa1338270:intergenic | 40.0% | |
| CCCAACCAAGCTATAATTGT+AGG | + | tig0001957:10835-10854 | Msa1338270:intron | 40.0% | |
| CCCTACAATTATAGCTTGGT+TGG | - | tig0001957:10839-10858 | Msa1338270:intergenic | 40.0% | |
| TGGTCCCTACAATTATAGCT+TGG | - | tig0001957:10843-10862 | Msa1338270:intergenic | 40.0% | |
| CATCTACCTACCATATCCAT+CGG | + | tig0001957:11036-11055 | Msa1338270:intron | 40.0% | |
| GGTTTGGGAAGATGAAACAA+TGG | - | tig0001957:11080-11099 | Msa1338270:intergenic | 40.0% | |
| !! | TGTAGTGGGTAGATGGAAAT+GGG | - | tig0001957:11105-11124 | Msa1338270:intergenic | 40.0% |
| !! | ATGTAGTGGGTAGATGGAAA+TGG | - | tig0001957:11106-11125 | Msa1338270:intergenic | 40.0% |
| ! | CTTTCTAAGGAGAGATGTAG+TGG | - | tig0001957:11120-11139 | Msa1338270:intergenic | 40.0% |
| AGATCTGGAAAACGCTAAGA+GGG | - | tig0001957:11190-11209 | Msa1338270:intergenic | 40.0% | |
| AAGATCTGGAAAACGCTAAG+AGG | - | tig0001957:11191-11210 | Msa1338270:intergenic | 40.0% | |
| ! | AAACGAATTGGGTTTTTCGC+CGG | - | tig0001957:11275-11294 | Msa1338270:intergenic | 40.0% |
| TCGAGAGAGATTGTGAAGAA+CGG | + | tig0001957:11380-11399 | Msa1338270:intron | 40.0% | |
| !! | GTTCCAATAAAAGCATCACG+TGG | - | tig0001957:11636-11655 | Msa1338270:intergenic | 40.0% |
| ! | AGGAAGTATAACACGCTGTC+CGG | - | tig0001957:6325-6344 | Msa1338270:intergenic | 45.0% |
| GGTGAACCTGTAAAGGAATC+AGG | - | tig0001957:6345-6364 | Msa1338270:intergenic | 45.0% | |
| ATTCCTTTACAGGTTCACCG+CGG | + | tig0001957:6346-6365 | Msa1338270:CDS | 45.0% | |
| AGAGAAAGGCCTTAGTGCAT+CGG | + | tig0001957:6485-6504 | Msa1338270:CDS | 45.0% | |
| ATGTTTGGGAAAGTCACAGC+AGG | + | tig0001957:6582-6601 | Msa1338270:CDS | 45.0% | |
| !!! | CCCCCTCTTTTGAAACTCTA+CGG | - | tig0001957:6703-6722 | Msa1338270:intergenic | 45.0% |
| CCGTAGAGTTTCAAAAGAGG+GGG | + | tig0001957:6700-6719 | Msa1338270:CDS | 45.0% | |
| TACATGATGCATGGACCTTG+CGG | + | tig0001957:6858-6877 | Msa1338270:CDS | 45.0% | |
| AGATTCCACTTCCATAGACG+AGG | + | tig0001957:6950-6969 | Msa1338270:CDS | 45.0% | |
| ! | CATAGACGAGGATGGTTTTC+CGG | + | tig0001957:6962-6981 | Msa1338270:CDS | 45.0% |
| GGTGTTAGCGTGATCAAGAA+CGG | + | tig0001957:7005-7024 | Msa1338270:CDS | 45.0% | |
| GATCAAGAACGGTACTCCTT+TGG | + | tig0001957:7016-7035 | Msa1338270:CDS | 45.0% | |
| ACGGTACTCCTTTGGACAAT+AGG | + | tig0001957:7024-7043 | Msa1338270:CDS | 45.0% | |
| ! | ATGTGGAGGTTTGCTCTATC+AGG | - | tig0001957:7164-7183 | Msa1338270:intergenic | 45.0% |
| AGATTGGCATTGCATCTCGA+GGG | + | tig0001957:7326-7345 | Msa1338270:CDS | 45.0% | |
| TCGAGGGTCAACAATGTGTT+AGG | + | tig0001957:7342-7361 | Msa1338270:CDS | 45.0% | |
| GTCTACCCTCACTGTATTGT+TGG | - | tig0001957:7451-7470 | Msa1338270:intergenic | 45.0% | |
| ! | GGATGCCATATCCTCTTTTC+AGG | - | tig0001957:7515-7534 | Msa1338270:intergenic | 45.0% |
| TGGTAGGCTTTCCTACATTC+CGG | + | tig0001957:7556-7575 | Msa1338270:CDS | 45.0% | |
| TAAAGTTCACCTGACCCTAC+CGG | - | tig0001957:7578-7597 | Msa1338270:intergenic | 45.0% | |
| GACGTTTCAAAAGGGTTGTC+AGG | + | tig0001957:7616-7635 | Msa1338270:CDS | 45.0% | |
| CGTTTCAAAAGGGTTGTCAG+GGG | + | tig0001957:7618-7637 | Msa1338270:CDS | 45.0% | |
| CAAGATGCATGTTATGCGCT+TGG | + | tig0001957:7686-7705 | Msa1338270:CDS | 45.0% | |
| GAAGCTTCTAGATCACAGAG+TGG | + | tig0001957:7749-7768 | Msa1338270:CDS | 45.0% | |
| ACTTGGAAGCTACTAGCTGA+TGG | + | tig0001957:7848-7867 | Msa1338270:CDS | 45.0% | |
| AAATCAGTTGAGGCTCAGGA+TGG | + | tig0001957:8505-8524 | Msa1338270:CDS | 45.0% | |
| GAACCGGAAAGACCTTTATG+TGG | + | tig0001957:8557-8576 | Msa1338270:CDS | 45.0% | |
| CTTACCTTGTGACCTAATGG+TGG | - | tig0001957:8596-8615 | Msa1338270:intergenic | 45.0% | |
| GACATGGTTGCAGATGAAGA+TGG | + | tig0001957:9117-9136 | Msa1338270:CDS | 45.0% | |
| TGTTCAACGGAGTCAAGAGT+AGG | - | tig0001957:9285-9304 | Msa1338270:intergenic | 45.0% | |
| !! | TGCAAGGAGTATCGGAACTT+AGG | - | tig0001957:9356-9375 | Msa1338270:intergenic | 45.0% |
| ! | TAACAACATGATGGGAACGC+CGG | - | tig0001957:9481-9500 | Msa1338270:intergenic | 45.0% |
| CGACTACAAGTTAACCACCT+TGG | + | tig0001957:9540-9559 | Msa1338270:CDS | 45.0% | |
| TGCTACTGTCATTACTGGCA+AGG | + | tig0001957:9578-9597 | Msa1338270:CDS | 45.0% | |
| GCTACTGTCATTACTGGCAA+GGG | + | tig0001957:9579-9598 | Msa1338270:CDS | 45.0% | |
| TTGGGACCAAATCCATCCTT+GGG | - | tig0001957:9626-9645 | Msa1338270:intergenic | 45.0% | |
| ! | GATTTGGTCCCAACAGATTC+AGG | + | tig0001957:9633-9652 | Msa1338270:CDS | 45.0% |
| TCAGGGGCAATCATTGTCTA+AGG | + | tig0001957:9725-9744 | Msa1338270:CDS | 45.0% | |
| ! | GGGCAATCATTGTCTAAGGT+TGG | + | tig0001957:9729-9748 | Msa1338270:CDS | 45.0% |
| TCGAGGGTAACCACAAAGAA+AGG | + | tig0001957:9804-9823 | Msa1338270:CDS | 45.0% | |
| CGAGGGTAACCACAAAGAAA+GGG | + | tig0001957:9805-9824 | Msa1338270:CDS | 45.0% | |
| CGGGAAAACAACATTGAGAG+TGG | - | tig0001957:9874-9893 | Msa1338270:intergenic | 45.0% | |
| !!! | TCTCAATGTTGTTTTCCCGG+AGG | + | tig0001957:9875-9894 | Msa1338270:CDS | 45.0% |
| CACGGGCCAACAAATCTATT+TGG | - | tig0001957:10358-10377 | Msa1338270:intergenic | 45.0% | |
| AGAGAACCGATGGATATGGT+AGG | - | tig0001957:11045-11064 | Msa1338270:intergenic | 45.0% | |
| CTGAAGAGAACCGATGGATA+TGG | - | tig0001957:11049-11068 | Msa1338270:intergenic | 45.0% | |
| !! | CATATCCATCGGTTCTCTTC+AGG | + | tig0001957:11047-11066 | Msa1338270:intron | 45.0% |
| ! | AGATGGAAATGGGTGGGTTT+GGG | - | tig0001957:11095-11114 | Msa1338270:intergenic | 45.0% |
| ! | TAGATGGAAATGGGTGGGTT+TGG | - | tig0001957:11096-11115 | Msa1338270:intergenic | 45.0% |
| ATCGCTTCCACCATCAATTC+CGG | + | tig0001957:11225-11244 | Msa1338270:CDS | 45.0% | |
| ! | AGAAGAAGGTGATGGTGTGA+TGG | + | tig0001957:11609-11628 | Msa1338270:CDS | 45.0% |
| ! | GGTCCACGTGATGCTTTTAT+TGG | + | tig0001957:11630-11649 | Msa1338270:CDS | 45.0% |
| CCTTAGTGCATCGGATAGAC+CGG | + | tig0001957:6494-6513 | Msa1338270:CDS | 50.0% | |
| GAAACGGCCATGTGCAACTT+TGG | - | tig0001957:6834-6853 | Msa1338270:intergenic | 50.0% | |
| CACCTTGCATGAAGGGGAAA+AGG | + | tig0001957:6898-6917 | Msa1338270:CDS | 50.0% | |
| ! | CACCTTTTCCCCTTCATGCA+AGG | - | tig0001957:6903-6922 | Msa1338270:intergenic | 50.0% |
| TCCACTTCCATAGACGAGGA+TGG | + | tig0001957:6954-6973 | Msa1338270:CDS | 50.0% | |
| ACCATCCTCGTCTATGGAAG+TGG | - | tig0001957:6958-6977 | Msa1338270:intergenic | 50.0% | |
| CGGAAAACCATCCTCGTCTA+TGG | - | tig0001957:6964-6983 | Msa1338270:intergenic | 50.0% | |
| ! | TGTCACCGTGTGAAGCATCT+TGG | + | tig0001957:7258-7277 | Msa1338270:CDS | 50.0% |
| GAGATTGGCATTGCATCTCG+AGG | + | tig0001957:7325-7344 | Msa1338270:CDS | 50.0% | |
| AGGCTTTCCTACATTCCGGT+AGG | + | tig0001957:7560-7579 | Msa1338270:CDS | 50.0% | |
| GGCTTTCCTACATTCCGGTA+GGG | + | tig0001957:7561-7580 | Msa1338270:CDS | 50.0% | |
| CGAAGGATCCTCAACATTCC+AGG | + | tig0001957:7887-7906 | Msa1338270:CDS | 50.0% | |
| ATCCATGCCATACCCAGTTC+TGG | + | tig0001957:8348-8367 | Msa1338270:CDS | 50.0% | |
| ATCCAGAACTGGGTATGGCA+TGG | - | tig0001957:8353-8372 | Msa1338270:intergenic | 50.0% | |
| ACAGTGCCTCATCCAGAACT+GGG | - | tig0001957:8363-8382 | Msa1338270:intergenic | 50.0% | |
| TCTGCCACCATTAGGTCACA+AGG | + | tig0001957:8589-8608 | Msa1338270:CDS | 50.0% | |
| GCTTCTCTATTGTTGCCTGG+AGG | + | tig0001957:8646-8665 | Msa1338270:CDS | 50.0% | |
| !! | TGAAGATGGTGAGAGCGTCT+TGG | + | tig0001957:9131-9150 | Msa1338270:CDS | 50.0% |
| GAGCGTCTTGGATATTCCAG+AGG | + | tig0001957:9143-9162 | Msa1338270:CDS | 50.0% | |
| GGAGGAATGCATAACTCCTC+TGG | - | tig0001957:9162-9181 | Msa1338270:intergenic | 50.0% | |
| CGACAATCCGCTACAAGCAT+TGG | + | tig0001957:9185-9204 | Msa1338270:CDS | 50.0% | |
| GTTGGGACCAAATCCATCCT+TGG | - | tig0001957:9627-9646 | Msa1338270:intergenic | 50.0% | |
| TGGATTGTATCTCCCTCGAC+CGG | + | tig0001957:9749-9768 | Msa1338270:CDS | 50.0% | |
| AACTGCCCATGCGTAAACAC+CGG | - | tig0001957:9771-9790 | Msa1338270:intergenic | 50.0% | |
| ! | ACATTGAGAGTGGAGGTGCA+TGG | - | tig0001957:9864-9883 | Msa1338270:intergenic | 50.0% |
| ! | TTACGTCGGTGGCAAGTTGA+GGG | + | tig0001957:10313-10332 | Msa1338270:intron | 50.0% |
| TCCACGCGTACGAGTTAGTA+CGG | + | tig0001957:10693-10712 | Msa1338270:intron | 50.0% | |
| ACGGTCAGCAAGTGAGTCAT+AGG | + | tig0001957:10712-10731 | Msa1338270:intron | 50.0% | |
| GTTGACCTGAAGAGAACCGA+TGG | - | tig0001957:11055-11074 | Msa1338270:intergenic | 50.0% | |
| GTGGGTAGATGGAAATGGGT+GGG | - | tig0001957:11101-11120 | Msa1338270:intergenic | 50.0% | |
| AGTGGGTAGATGGAAATGGG+TGG | - | tig0001957:11102-11121 | Msa1338270:intergenic | 50.0% | |
| !! | GGAGAGATGTAGTGGGTAGA+TGG | - | tig0001957:11112-11131 | Msa1338270:intergenic | 50.0% |
| GAAGCAGGAAGAGGAAGATC+TGG | - | tig0001957:11205-11224 | Msa1338270:intergenic | 50.0% | |
| ! | ATTGGGTTTTTCGCCGGAAC+TGG | - | tig0001957:11269-11288 | Msa1338270:intergenic | 50.0% |
| CGTGTGCACGAAAGTGACAA+CGG | + | tig0001957:11431-11450 | Msa1338270:intron | 50.0% | |
| TGAAGTCGGTGAGCTTCAGA+GGG | + | tig0001957:11486-11505 | Msa1338270:CDS | 50.0% | |
| GTACCGCGGTGAACCTGTAA+AGG | - | tig0001957:6352-6371 | Msa1338270:intergenic | 55.0% | |
| CCGGTCTATCCGATGCACTA+AGG | - | tig0001957:6497-6516 | Msa1338270:intergenic | 55.0% | |
| ! | TTCAAGTTCGCAGCTCCGCA+AGG | - | tig0001957:6876-6895 | Msa1338270:intergenic | 55.0% |
| GCAGGAGACAAGGACGAAGA+AGG | + | tig0001957:7194-7213 | Msa1338270:CDS | 55.0% | |
| TCCTACATTCCGGTAGGGTC+AGG | + | tig0001957:7566-7585 | Msa1338270:CDS | 55.0% | |
| ACCTGACCCTACCGGAATGT+AGG | - | tig0001957:7570-7589 | Msa1338270:intergenic | 55.0% | |
| !! | GCCATACCCAGTTCTGGATG+AGG | + | tig0001957:8354-8373 | Msa1338270:CDS | 55.0% |
| GCCTCATCCAGAACTGGGTA+TGG | - | tig0001957:8358-8377 | Msa1338270:intergenic | 55.0% | |
| GACAGTGCCTCATCCAGAAC+TGG | - | tig0001957:8364-8383 | Msa1338270:intergenic | 55.0% | |
| !! | TGTAGCGGATTGTCGCATGG+AGG | - | tig0001957:9180-9199 | Msa1338270:intergenic | 55.0% |
| !! | GCTTGTAGCGGATTGTCGCA+TGG | - | tig0001957:9183-9202 | Msa1338270:intergenic | 55.0% |
| ! | GTCATTACTGGCAAGGGTGC+TGG | + | tig0001957:9585-9604 | Msa1338270:CDS | 55.0% |
| !! | TGGCAAGGGTGCTGGACAAA+AGG | + | tig0001957:9593-9612 | Msa1338270:CDS | 55.0% |
| CATGCGTAAACACCGGTCGA+GGG | - | tig0001957:9764-9783 | Msa1338270:intergenic | 55.0% | |
| CTCGACCGGTGTTTACGCAT+GGG | + | tig0001957:9763-9782 | Msa1338270:CDS | 55.0% | |
| GTTACGTCGGTGGCAAGTTG+AGG | + | tig0001957:10312-10331 | Msa1338270:intron | 55.0% | |
| ATTTCCACCCGTGCAACGCA+CGG | - | tig0001957:10376-10395 | Msa1338270:intergenic | 55.0% | |
| ACCGTACTAACTCGTACGCG+TGG | - | tig0001957:10697-10716 | Msa1338270:intergenic | 55.0% | |
| GGAAGCGATGAAGCAGGAAG+AGG | - | tig0001957:11214-11233 | Msa1338270:intergenic | 55.0% | |
| !! | GATGGTGGAAGCGATGAAGC+AGG | - | tig0001957:11220-11239 | Msa1338270:intergenic | 55.0% |
| GGTTTCGCCGGAATTGATGG+TGG | - | tig0001957:11235-11254 | Msa1338270:intergenic | 55.0% | |
| GTGGGTTTCGCCGGAATTGA+TGG | - | tig0001957:11238-11257 | Msa1338270:intergenic | 55.0% | |
| ! | TTTTTCGCCGGAACTGGTGG+TGG | - | tig0001957:11263-11282 | Msa1338270:intergenic | 55.0% |
| ! | GTGTGTTTCTGACCGCGAAC+CGG | + | tig0001957:11453-11472 | Msa1338270:intron | 55.0% |
| CCGACTTCACTTTCCACCAC+CGG | - | tig0001957:11475-11494 | Msa1338270:intergenic | 55.0% | |
| !! | CCGGTGGTGGAAAGTGAAGT+CGG | + | tig0001957:11472-11491 | Msa1338270:intron | 55.0% |
| GTGAAGTCGGTGAGCTTCAG+AGG | + | tig0001957:11485-11504 | Msa1338270:intron | 55.0% | |
| GAAGTCGGTGAGCTTCAGAG+GGG | + | tig0001957:11487-11506 | Msa1338270:CDS | 55.0% | |
| AAGTCGGTGAGCTTCAGAGG+GGG | + | tig0001957:11488-11507 | Msa1338270:CDS | 55.0% | |
| GACAATGACCCGCGGAAAGC+CGG | + | tig0001957:6303-6322 | Msa1338270:CDS | 60.0% | |
| GAATGGGCAGTCTTGCCTCC+AGG | - | tig0001957:8664-8683 | Msa1338270:intergenic | 60.0% | |
| CGGTGGTGCACCAATCTCCT+TGG | - | tig0001957:9401-9420 | Msa1338270:intergenic | 60.0% | |
| CCATGCGTAAACACCGGTCG+AGG | - | tig0001957:9765-9784 | Msa1338270:intergenic | 60.0% | |
| CCTCGACCGGTGTTTACGCA+TGG | + | tig0001957:9762-9781 | Msa1338270:CDS | 60.0% | |
| TTGTTGGCCCGTGCGTTGCA+CGG | + | tig0001957:10365-10384 | Msa1338270:intron | 60.0% | |
| TTTCCACCCGTGCAACGCAC+GGG | - | tig0001957:10375-10394 | Msa1338270:intergenic | 60.0% | |
| GTGGTGGTTGTGGGTTTCGC+CGG | - | tig0001957:11247-11266 | Msa1338270:intergenic | 60.0% | |
| !! | CCGGAACTGGTGGTGGTTGT+GGG | - | tig0001957:11256-11275 | Msa1338270:intergenic | 60.0% |
| CCCACAACCACCACCAGTTC+CGG | + | tig0001957:11253-11272 | Msa1338270:CDS | 60.0% | |
| ! | GGGTTTTTCGCCGGAACTGG+TGG | - | tig0001957:11266-11285 | Msa1338270:intergenic | 60.0% |
| TTCGTGCACACGTTCGCCGT+CGG | - | tig0001957:11423-11442 | Msa1338270:intergenic | 60.0% | |
| ! | TGTTTCTGACCGCGAACCGG+TGG | + | tig0001957:11456-11475 | Msa1338270:intron | 60.0% |
| !! | CACTTTCCACCACCGGTTCG+CGG | - | tig0001957:11468-11487 | Msa1338270:intergenic | 60.0% |
| GTGAGCTTCAGAGGGGGAGA+GGG | + | tig0001957:11494-11513 | Msa1338270:CDS | 60.0% | |
| CTTCAGAGGGGGAGAGGGTT+GGG | + | tig0001957:11499-11518 | Msa1338270:CDS | 60.0% | |
| ACACGCTGTCCGGCTTTCCG+CGG | - | tig0001957:6315-6334 | Msa1338270:intergenic | 65.0% | |
| TGTTGGCCCGTGCGTTGCAC+GGG | + | tig0001957:10366-10385 | Msa1338270:intron | 65.0% | |
| !! | GCCGGAACTGGTGGTGGTTG+TGG | - | tig0001957:11257-11276 | Msa1338270:intergenic | 65.0% |
| TTCTGACCGCGAACCGGTGG+TGG | + | tig0001957:11459-11478 | Msa1338270:intron | 65.0% | |
| GGTGAGCTTCAGAGGGGGAG+AGG | + | tig0001957:11493-11512 | Msa1338270:CDS | 65.0% | |
| GCTTCAGAGGGGGAGAGGGT+TGG | + | tig0001957:11498-11517 | Msa1338270:CDS | 65.0% | |
| CACGCTGTCCGGCTTTCCGC+GGG | - | tig0001957:6314-6333 | Msa1338270:intergenic | 70.0% | |
| TGGCCCGTGCGTTGCACGGG+TGG | + | tig0001957:10369-10388 | Msa1338270:intron | 75.0% | |
| GGGGGAGAGGGTTGGGTCGC+CGG | + | tig0001957:11506-11525 | Msa1338270:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001957 | gene | 6297 | 11660 | 6297 | ID=Msa1338270;Name=Msa1338270 |
| tig0001957 | mRNA | 6297 | 11660 | 6297 | ID=Msa1338270-mRNA-1;Parent=Msa1338270;Name=Msa1338270-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|0.2|1|1|5|0|1145 |
| tig0001957 | exon | 6297 | 6603 | 6297 | ID=Msa1338270-mRNA-1:exon:1568;Parent=Msa1338270-mRNA-1 |
| tig0001957 | exon | 6691 | 7908 | 6691 | ID=Msa1338270-mRNA-1:exon:1569;Parent=Msa1338270-mRNA-1 |
| tig0001957 | exon | 8254 | 9896 | 8254 | ID=Msa1338270-mRNA-1:exon:1570;Parent=Msa1338270-mRNA-1 |
| tig0001957 | exon | 11196 | 11290 | 11196 | ID=Msa1338270-mRNA-1:exon:1571;Parent=Msa1338270-mRNA-1 |
| tig0001957 | exon | 11486 | 11660 | 11486 | ID=Msa1338270-mRNA-1:exon:1572;Parent=Msa1338270-mRNA-1 |
| tig0001957 | CDS | 6297 | 6603 | 6297 | ID=Msa1338270-mRNA-1:cds;Parent=Msa1338270-mRNA-1 |
| tig0001957 | CDS | 6691 | 7908 | 6691 | ID=Msa1338270-mRNA-1:cds;Parent=Msa1338270-mRNA-1 |
| tig0001957 | CDS | 8254 | 9896 | 8254 | ID=Msa1338270-mRNA-1:cds;Parent=Msa1338270-mRNA-1 |
| tig0001957 | CDS | 11196 | 11290 | 11196 | ID=Msa1338270-mRNA-1:cds;Parent=Msa1338270-mRNA-1 |
| tig0001957 | CDS | 11486 | 11660 | 11486 | ID=Msa1338270-mRNA-1:cds;Parent=Msa1338270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
