AlfalfaGEDB | Msa1340890

M. sativa cultivar zhongmu-4 / Msa1340890

KEGG: K17600
GO: GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023
PFAM: PF07928.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340890	PNY06585.1	92.929	99	7	0	1	99	159	257	1.05e-53	182

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340890	sp\|F4JT76\|VPS54_ARATH	78.788	99	21	0	1	99	784	882	4.85e-45	157

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340890	A0A2K3NU80	92.929	99	7	0	1	99	159	257	5.01e-54	182

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0207360	Msa1340890	0.800950	1.133077e-48	-8.615850e-47
Msa0207410	Msa1340890	0.814255	1.690746e-51	-8.615850e-47
Msa0207440	Msa1340890	0.811908	5.532077e-51	-8.615850e-47
Msa1044150	Msa1340890	0.832123	1.131222e-55	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340890	MtrunA17_Chr2g0303321	96.970	99	3	0	1	99	754	852	1.07e-57	190

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1340890	AT4G19490.1	78.788	99	21	0	1	99	784	882	4.93e-46	157
Msa1340890	AT4G19490.2	78.788	99	21	0	1	99	784	882	4.93e-46	157

Find 34 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTACATAGCAGTGTATTAAT+TGG	0.213788	tig0004591:-323	Msa1340890:three_prime_UTR
GATTTACAATTCCTCATATA+AGG	0.242498	tig0004591:-353	Msa1340890:three_prime_UTR
CAGATGGAGGAAGGCGAAAA+AGG	0.278769	tig0004591:+494	Msa1340890:intergenic
CTAAATTGTGTTCAGGTGTC+TGG	0.311583	tig0004591:-796	Msa1340890:intron
TGCCAGCGCCAGGTGTTTAG+AGG	0.373233	tig0004591:+759	Msa1340890:intergenic
TTCATACACGCTATTATTCC+TGG	0.375281	tig0004591:-721	Msa1340890:intron
CATTTCTGGTGTAAGAAATT+CGG	0.375373	tig0004591:-603	Msa1340890:intron
GAACATGTCAACTTGTGCTT+GGG	0.388495	tig0004591:-1910	Msa1340890:CDS
AAATTAATAGATATTATGTT+AGG	0.398692	tig0004591:-204	Msa1340890:three_prime_UTR
AGAAATATTGTAATAGAGGA+AGG	0.440446	tig0004591:-230	Msa1340890:three_prime_UTR
CGCCAGGTGTTTAGAGGTGA+TGG	0.456248	tig0004591:+765	Msa1340890:intergenic
CAAAGGAAAAGTAGAGGGAT+TGG	0.466005	tig0004591:+262	Msa1340890:intergenic
TGACTTGACTTGCCAGCGCC+AGG	0.481429	tig0004591:+749	Msa1340890:intergenic
AGAACATGTCAACTTGTGCT+TGG	0.502388	tig0004591:-1911	Msa1340890:CDS
CTGAAGATAGTGCTGGCAAA+AGG	0.511487	tig0004591:+1978	Msa1340890:intergenic
AAATATTGTAATAGAGGAAG+GGG	0.521907	tig0004591:-228	Msa1340890:three_prime_UTR
CCACTCAAAGGAAAAGTAGA+GGG	0.522711	tig0004591:+257	Msa1340890:intergenic
AATATTCATCCCCTATAAGC+AGG	0.526424	tig0004591:+379	Msa1340890:intergenic
CACCTCTAAACACCTGGCGC+TGG	0.532318	tig0004591:-761	Msa1340890:CDS
GAAATATTGTAATAGAGGAA+GGG	0.548667	tig0004591:-229	Msa1340890:three_prime_UTR
TCATTGCAAGGGAGACTACA+TGG	0.548928	tig0004591:+289	Msa1340890:intergenic
CATAAGTCTACTCTATCAGA+TGG	0.558581	tig0004591:+478	Msa1340890:intergenic
GCTTGGGGCTAAAGCAATGC+AGG	0.562696	tig0004591:-1894	Msa1340890:intron
TCCACTCAAAGGAAAAGTAG+AGG	0.563123	tig0004591:+256	Msa1340890:intergenic
AGACATTGATCGAGTCGCGC+AGG	0.571184	tig0004591:-530	Msa1340890:CDS
ACAACTTCTGAAGATAGTGC+TGG	0.578492	tig0004591:+1971	Msa1340890:intergenic
GTCCATCACCTCTAAACACC+TGG	0.580720	tig0004591:-767	Msa1340890:CDS
CTACTCTATCAGATGGAGGA+AGG	0.600122	tig0004591:+485	Msa1340890:intergenic
GGGATTGGAGAATCATTGCA+AGG	0.608732	tig0004591:+277	Msa1340890:intergenic
GGATTGGAGAATCATTGCAA+GGG	0.631385	tig0004591:+278	Msa1340890:intergenic
TTCAGAAGTTGTTCTCCGTG+TGG	0.635037	tig0004591:-1960	Msa1340890:CDS
AACATGTCAACTTGTGCTTG+GGG	0.638733	tig0004591:-1909	Msa1340890:CDS
AAGTCTACTCTATCAGATGG+AGG	0.649113	tig0004591:+481	Msa1340880:intergenic
ACTTCAAGATTTCTACCACA+CGG	0.672850	tig0004591:+1945	Msa1340880:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAATAGTTTTTATATCTAAA+AGG	+	tig0004591:305-324	Msa1340890:intergenic	10.0%
!!	ATTTAAAAAAAAAAACGAAA+TGG	+	tig0004591:615-634	Msa1340890:intergenic	10.0%
!!	AAATTAATAGATATTATGTT+AGG	-	tig0004591:1937-1956	Msa1340890:CDS	10.0%
!!!	AAATAGTTTTTATATCTAAA+AGG	+	tig0004591:305-324	Msa1340890:intergenic	10.0%
!!	ATTTAAAAAAAAAAACGAAA+TGG	+	tig0004591:615-634	Msa1340890:intergenic	10.0%
!!	AAATTAATAGATATTATGTT+AGG	-	tig0004591:1937-1956	Msa1340890:CDS	10.0%
!!	AAGAGAAAAATTTATTGTAT+TGG	+	tig0004591:445-464	Msa1340890:intergenic	15.0%
!!!	ATATTAGGTTTTTATCAAAT+TGG	+	tig0004591:675-694	Msa1340890:intergenic	15.0%
!!	ATTTCAGATATGAATATATT+AGG	+	tig0004591:690-709	Msa1340890:intergenic	15.0%
!!!	ATATCTGAAATAGAAAATAA+TGG	-	tig0004591:699-718	Msa1340890:intron	15.0%
!!	AAAAAGAAATATTGTAATAG+AGG	-	tig0004591:1907-1926	Msa1340890:CDS	15.0%
!!	AAGAGAAAAATTTATTGTAT+TGG	+	tig0004591:445-464	Msa1340890:intergenic	15.0%
!!!	ATATTAGGTTTTTATCAAAT+TGG	+	tig0004591:675-694	Msa1340890:intergenic	15.0%
!!	ATTTCAGATATGAATATATT+AGG	+	tig0004591:690-709	Msa1340890:intergenic	15.0%
!!!	ATATCTGAAATAGAAAATAA+TGG	-	tig0004591:699-718	Msa1340890:intron	15.0%
!!	AAAAAGAAATATTGTAATAG+AGG	-	tig0004591:1907-1926	Msa1340890:CDS	15.0%
!!!	ATAAGTTAGAATCAATTTTC+AGG	-	tig0004591:543-562	Msa1340890:CDS	20.0%
!!!	TAAGTTAGAATCAATTTTCA+GGG	-	tig0004591:544-563	Msa1340890:CDS	20.0%
!!!	TGGTTTTATTGGAAATATTT+TGG	+	tig0004591:835-854	Msa1340890:intergenic	20.0%
!!!	TATGAAAATATTTTGGGTAA+CGG	+	tig0004591:895-914	Msa1340890:intergenic	20.0%
!!	AACTCTAAGTTAATTGAAAT+GGG	+	tig0004591:1297-1316	Msa1340890:intergenic	20.0%
!!	AAACTCTAAGTTAATTGAAA+TGG	+	tig0004591:1298-1317	Msa1340890:intergenic	20.0%
!!!	ATTTTTTCTAAATTGTGTTC+AGG	-	tig0004591:1338-1357	Msa1340890:intron	20.0%
!!!	TTTATGAAATTGTTGTTACA+CGG	-	tig0004591:1489-1508	Msa1340890:intron	20.0%
!!!	ATAAGTTAGAATCAATTTTC+AGG	-	tig0004591:543-562	Msa1340890:CDS	20.0%
!!!	TAAGTTAGAATCAATTTTCA+GGG	-	tig0004591:544-563	Msa1340890:CDS	20.0%
!!!	TGGTTTTATTGGAAATATTT+TGG	+	tig0004591:835-854	Msa1340890:intergenic	20.0%
!!!	TATGAAAATATTTTGGGTAA+CGG	+	tig0004591:895-914	Msa1340890:intergenic	20.0%
!!	AACTCTAAGTTAATTGAAAT+GGG	+	tig0004591:1297-1316	Msa1340890:intergenic	20.0%
!!	AAACTCTAAGTTAATTGAAA+TGG	+	tig0004591:1298-1317	Msa1340890:intergenic	20.0%
!!!	ATTTTTTCTAAATTGTGTTC+AGG	-	tig0004591:1338-1357	Msa1340890:intron	20.0%
!!!	TTTATGAAATTGTTGTTACA+CGG	-	tig0004591:1489-1508	Msa1340890:intron	20.0%
!!	TGTATTGTTCTCTGAATTTT+TGG	-	tig0004591:277-296	Msa1340890:three_prime_UTR	25.0%
!	TGATTTCTGCAAAAGAATTT+AGG	-	tig0004591:363-382	Msa1340890:three_prime_UTR	25.0%
!!	AAGTTAGAATCAATTTTCAG+GGG	-	tig0004591:545-564	Msa1340890:CDS	25.0%
!	AATAAATATTAGAAGCTCCA+AGG	-	tig0004591:632-651	Msa1340890:intron	25.0%
!!!	TGGTAATAGAATGGTTTTAT+TGG	+	tig0004591:846-865	Msa1340890:intergenic	25.0%
!!!	CTTTTTTCTTGGTAATAGAA+TGG	+	tig0004591:855-874	Msa1340890:intergenic	25.0%
!	TTACCAAGAAAAAAGATGAT+AGG	-	tig0004591:860-879	Msa1340890:intron	25.0%
!	GAATTCTGGTATAATAGAAT+GGG	+	tig0004591:948-967	Msa1340890:intergenic	25.0%
!	AGAATTCTGGTATAATAGAA+TGG	+	tig0004591:949-968	Msa1340890:intergenic	25.0%
!	ACATTAGTTGAAATCTGATA+GGG	+	tig0004591:1062-1081	Msa1340890:intergenic	25.0%
!	TTGCTGAGTTAAAAAATTCA+CGG	-	tig0004591:1170-1189	Msa1340890:intron	25.0%
!!!	TTAGAGTTTTGTCATTCTTT+TGG	-	tig0004591:1309-1328	Msa1340890:intron	25.0%
!	ATAACTTTGTTCTTCATTTC+TGG	-	tig0004591:1524-1543	Msa1340890:intron	25.0%
!!	AATAGCAATTTTCTATTCTC+TGG	+	tig0004591:1585-1604	Msa1340890:intergenic	25.0%
!!	TTTTCAATGAATATCTTTGC+TGG	-	tig0004591:1712-1731	Msa1340890:intron	25.0%
!	GATTTACAATTCCTCATATA+AGG	-	tig0004591:1788-1807	Msa1340890:intron	25.0%
!!	GTAAATTTTCACCTTATATG+AGG	+	tig0004591:1802-1821	Msa1340890:intergenic	25.0%
!	TTACATAGCAGTGTATTAAT+TGG	-	tig0004591:1818-1837	Msa1340890:intron	25.0%
!!	ATATTTCTTTTTCCACTCAA+AGG	+	tig0004591:1899-1918	Msa1340890:intergenic	25.0%
!	AGAAATATTGTAATAGAGGA+AGG	-	tig0004591:1911-1930	Msa1340890:CDS	25.0%
!	GAAATATTGTAATAGAGGAA+GGG	-	tig0004591:1912-1931	Msa1340890:CDS	25.0%
!	AAATATTGTAATAGAGGAAG+GGG	-	tig0004591:1913-1932	Msa1340890:CDS	25.0%
!!!	TCTTTTGTTTCTCTCTAATT+CGG	+	tig0004591:1966-1985	Msa1340890:intergenic	25.0%
!!	TGTATTGTTCTCTGAATTTT+TGG	-	tig0004591:277-296	Msa1340890:three_prime_UTR	25.0%
!	TGATTTCTGCAAAAGAATTT+AGG	-	tig0004591:363-382	Msa1340890:three_prime_UTR	25.0%
!!	AAGTTAGAATCAATTTTCAG+GGG	-	tig0004591:545-564	Msa1340890:CDS	25.0%
!	AATAAATATTAGAAGCTCCA+AGG	-	tig0004591:632-651	Msa1340890:intron	25.0%
!!!	TGGTAATAGAATGGTTTTAT+TGG	+	tig0004591:846-865	Msa1340890:intergenic	25.0%
!!!	CTTTTTTCTTGGTAATAGAA+TGG	+	tig0004591:855-874	Msa1340890:intergenic	25.0%
!	TTACCAAGAAAAAAGATGAT+AGG	-	tig0004591:860-879	Msa1340890:intron	25.0%
!	GAATTCTGGTATAATAGAAT+GGG	+	tig0004591:948-967	Msa1340890:intergenic	25.0%
!	AGAATTCTGGTATAATAGAA+TGG	+	tig0004591:949-968	Msa1340890:intergenic	25.0%
!	ACATTAGTTGAAATCTGATA+GGG	+	tig0004591:1062-1081	Msa1340890:intergenic	25.0%
!	TTGCTGAGTTAAAAAATTCA+CGG	-	tig0004591:1170-1189	Msa1340890:intron	25.0%
!!!	TTAGAGTTTTGTCATTCTTT+TGG	-	tig0004591:1309-1328	Msa1340890:intron	25.0%
!	ATAACTTTGTTCTTCATTTC+TGG	-	tig0004591:1524-1543	Msa1340890:intron	25.0%
!!	AATAGCAATTTTCTATTCTC+TGG	+	tig0004591:1585-1604	Msa1340890:intergenic	25.0%
!!	TTTTCAATGAATATCTTTGC+TGG	-	tig0004591:1712-1731	Msa1340890:intron	25.0%
!	GATTTACAATTCCTCATATA+AGG	-	tig0004591:1788-1807	Msa1340890:intron	25.0%
!!	GTAAATTTTCACCTTATATG+AGG	+	tig0004591:1802-1821	Msa1340890:intergenic	25.0%
!	TTACATAGCAGTGTATTAAT+TGG	-	tig0004591:1818-1837	Msa1340890:intron	25.0%
!!	ATATTTCTTTTTCCACTCAA+AGG	+	tig0004591:1899-1918	Msa1340890:intergenic	25.0%
!	AGAAATATTGTAATAGAGGA+AGG	-	tig0004591:1911-1930	Msa1340890:CDS	25.0%
!	GAAATATTGTAATAGAGGAA+GGG	-	tig0004591:1912-1931	Msa1340890:CDS	25.0%
!	AAATATTGTAATAGAGGAAG+GGG	-	tig0004591:1913-1932	Msa1340890:CDS	25.0%
!!!	TCTTTTGTTTCTCTCTAATT+CGG	+	tig0004591:1966-1985	Msa1340890:intergenic	25.0%
!	ATTCTTTTGCAGAAATCACT+TGG	+	tig0004591:361-380	Msa1340890:intergenic	30.0%
!	AATGATAATGAGTGATGAGA+TGG	+	tig0004591:421-440	Msa1340890:intergenic	30.0%
!!	TATAAGACCATTTTTCCCTA+TGG	+	tig0004591:496-515	Msa1340890:intergenic	30.0%
	AAAAAAACGAAATGGAAGCA+TGG	+	tig0004591:607-626	Msa1340890:intergenic	30.0%
!!!	ATTGGAAATATTTTGGCTTG+AGG	+	tig0004591:828-847	Msa1340890:intergenic	30.0%
!!!	CAACCTATCATCTTTTTTCT+TGG	+	tig0004591:866-885	Msa1340890:intergenic	30.0%
!!	AATATTTTGGGTAACGGTTA+TGG	+	tig0004591:889-908	Msa1340890:intergenic	30.0%
!!	AGGGGGTATGAAAATATTTT+GGG	+	tig0004591:901-920	Msa1340890:intergenic	30.0%
!!!	ATAATAGAATGGGTTTTGGA+GGG	+	tig0004591:938-957	Msa1340890:intergenic	30.0%
!!	TATAATAGAATGGGTTTTGG+AGG	+	tig0004591:939-958	Msa1340890:intergenic	30.0%
!!	TGGTATAATAGAATGGGTTT+TGG	+	tig0004591:942-961	Msa1340890:intergenic	30.0%
	AAAGGTCCATTATTAATGTG+GGG	+	tig0004591:1027-1046	Msa1340890:intergenic	30.0%
	GAAAGGTCCATTATTAATGT+GGG	+	tig0004591:1028-1047	Msa1340890:intergenic	30.0%
	TGAAAGGTCCATTATTAATG+TGG	+	tig0004591:1029-1048	Msa1340890:intergenic	30.0%
	ATAGGGTCACTATTAATGAA+AGG	+	tig0004591:1045-1064	Msa1340890:intergenic	30.0%
	CACATTAGTTGAAATCTGAT+AGG	+	tig0004591:1063-1082	Msa1340890:intergenic	30.0%
!!	CATTTCTGGTGTAAGAAATT+CGG	-	tig0004591:1538-1557	Msa1340890:intron	30.0%
!	TTCTTTCTTTTCCTGCTTAT+AGG	-	tig0004591:1751-1770	Msa1340890:intron	30.0%
!	TCTTTCTTTTCCTGCTTATA+GGG	-	tig0004591:1752-1771	Msa1340890:intron	30.0%
!!	CTTTTGTTTCTCTCTAATTC+GGG	+	tig0004591:1965-1984	Msa1340890:intergenic	30.0%
	ATCAATGTATTCTGACAACA+TGG	+	tig0004591:135-154	Msa1340890:intergenic	30.0%
!	ATTCTTTTGCAGAAATCACT+TGG	+	tig0004591:361-380	Msa1340890:intergenic	30.0%
!	AATGATAATGAGTGATGAGA+TGG	+	tig0004591:421-440	Msa1340890:intergenic	30.0%
!!	TATAAGACCATTTTTCCCTA+TGG	+	tig0004591:496-515	Msa1340890:intergenic	30.0%
	AAAAAAACGAAATGGAAGCA+TGG	+	tig0004591:607-626	Msa1340890:intergenic	30.0%
!!!	ATTGGAAATATTTTGGCTTG+AGG	+	tig0004591:828-847	Msa1340890:intergenic	30.0%
!!!	CAACCTATCATCTTTTTTCT+TGG	+	tig0004591:866-885	Msa1340890:intergenic	30.0%
!!	AATATTTTGGGTAACGGTTA+TGG	+	tig0004591:889-908	Msa1340890:intergenic	30.0%
!!	AGGGGGTATGAAAATATTTT+GGG	+	tig0004591:901-920	Msa1340890:intergenic	30.0%
!!!	ATAATAGAATGGGTTTTGGA+GGG	+	tig0004591:938-957	Msa1340890:intergenic	30.0%
!!	TATAATAGAATGGGTTTTGG+AGG	+	tig0004591:939-958	Msa1340890:intergenic	30.0%
!!	TGGTATAATAGAATGGGTTT+TGG	+	tig0004591:942-961	Msa1340890:intergenic	30.0%
	AAAGGTCCATTATTAATGTG+GGG	+	tig0004591:1027-1046	Msa1340890:intergenic	30.0%
	GAAAGGTCCATTATTAATGT+GGG	+	tig0004591:1028-1047	Msa1340890:intergenic	30.0%
	TGAAAGGTCCATTATTAATG+TGG	+	tig0004591:1029-1048	Msa1340890:intergenic	30.0%
	ATAGGGTCACTATTAATGAA+AGG	+	tig0004591:1045-1064	Msa1340890:intergenic	30.0%
	CACATTAGTTGAAATCTGAT+AGG	+	tig0004591:1063-1082	Msa1340890:intergenic	30.0%
!!	CATTTCTGGTGTAAGAAATT+CGG	-	tig0004591:1538-1557	Msa1340890:intron	30.0%
!	TTCTTTCTTTTCCTGCTTAT+AGG	-	tig0004591:1751-1770	Msa1340890:intron	30.0%
!	TCTTTCTTTTCCTGCTTATA+GGG	-	tig0004591:1752-1771	Msa1340890:intron	30.0%
!!	CTTTTGTTTCTCTCTAATTC+GGG	+	tig0004591:1965-1984	Msa1340890:intergenic	30.0%
	ACTTCAAGATTTCTACCACA+CGG	+	tig0004591:199-218	Msa1340890:intergenic	35.0%
	GGTCAAACTAAAAGAGATAG+AGG	+	tig0004591:393-412	Msa1340890:intergenic	35.0%
	ATGAGTGATGAGATGGATAA+TGG	+	tig0004591:414-433	Msa1340890:intergenic	35.0%
	TTCAACACCATAGGGAAAAA+TGG	-	tig0004591:486-505	Msa1340890:three_prime_UTR	35.0%
	ATTGGAACAGGATGAAAGTA+AGG	+	tig0004591:576-595	Msa1340890:intergenic	35.0%
	TTCTGTTGTACAGTTACAGA+GGG	+	tig0004591:754-773	Msa1340890:intergenic	35.0%
	TTTCTGTTGTACAGTTACAG+AGG	+	tig0004591:755-774	Msa1340890:intergenic	35.0%
!!!	GAAATATTTTGGCTTGAGGA+AGG	+	tig0004591:824-843	Msa1340890:intergenic	35.0%
!!	GAGGGGGTATGAAAATATTT+TGG	+	tig0004591:902-921	Msa1340890:intergenic	35.0%
!!!	TAATAGAATGGGTTTTGGAG+GGG	+	tig0004591:937-956	Msa1340890:intergenic	35.0%
	AAGGTCCATTATTAATGTGG+GGG	+	tig0004591:1026-1045	Msa1340890:intergenic	35.0%
	TTCATACACGCTATTATTCC+TGG	-	tig0004591:1420-1439	Msa1340890:intron	35.0%
	CATAAGTCTACTCTATCAGA+TGG	+	tig0004591:1666-1685	Msa1340890:intergenic	35.0%
!	CTTTCTTTTCCTGCTTATAG+GGG	-	tig0004591:1753-1772	Msa1340890:intron	35.0%
	AATATTCATCCCCTATAAGC+AGG	+	tig0004591:1765-1784	Msa1340890:intergenic	35.0%
	ACTTCAAGATTTCTACCACA+CGG	+	tig0004591:199-218	Msa1340890:intergenic	35.0%
	GGTCAAACTAAAAGAGATAG+AGG	+	tig0004591:393-412	Msa1340890:intergenic	35.0%
	ATGAGTGATGAGATGGATAA+TGG	+	tig0004591:414-433	Msa1340890:intergenic	35.0%
	TTCAACACCATAGGGAAAAA+TGG	-	tig0004591:486-505	Msa1340890:three_prime_UTR	35.0%
	ATTGGAACAGGATGAAAGTA+AGG	+	tig0004591:576-595	Msa1340890:intergenic	35.0%
	TTCTGTTGTACAGTTACAGA+GGG	+	tig0004591:754-773	Msa1340890:intergenic	35.0%
	TTTCTGTTGTACAGTTACAG+AGG	+	tig0004591:755-774	Msa1340890:intergenic	35.0%
!!!	GAAATATTTTGGCTTGAGGA+AGG	+	tig0004591:824-843	Msa1340890:intergenic	35.0%
!!	GAGGGGGTATGAAAATATTT+TGG	+	tig0004591:902-921	Msa1340890:intergenic	35.0%
!!!	TAATAGAATGGGTTTTGGAG+GGG	+	tig0004591:937-956	Msa1340890:intergenic	35.0%
	AAGGTCCATTATTAATGTGG+GGG	+	tig0004591:1026-1045	Msa1340890:intergenic	35.0%
	TTCATACACGCTATTATTCC+TGG	-	tig0004591:1420-1439	Msa1340890:intron	35.0%
	CATAAGTCTACTCTATCAGA+TGG	+	tig0004591:1666-1685	Msa1340890:intergenic	35.0%
!	CTTTCTTTTCCTGCTTATAG+GGG	-	tig0004591:1753-1772	Msa1340890:intron	35.0%
	AATATTCATCCCCTATAAGC+AGG	+	tig0004591:1765-1784	Msa1340890:intergenic	35.0%
!	ACAACTTCTGAAGATAGTGC+TGG	+	tig0004591:173-192	Msa1348030:intergenic	40.0%
	AGAACATGTCAACTTGTGCT+TGG	-	tig0004591:230-249	Msa1340890:three_prime_UTR	40.0%
	GAACATGTCAACTTGTGCTT+GGG	-	tig0004591:231-250	Msa1340890:three_prime_UTR	40.0%
	AACATGTCAACTTGTGCTTG+GGG	-	tig0004591:232-251	Msa1340890:three_prime_UTR	40.0%
!	TCCCTATGGTGTTGAATGTT+GGG	+	tig0004591:482-501	Msa1340890:intergenic	40.0%
!	TTCCCTATGGTGTTGAATGT+TGG	+	tig0004591:483-502	Msa1340890:intergenic	40.0%
	ATGGATGAGAAGATTGGAAC+AGG	+	tig0004591:588-607	Msa1340890:intergenic	40.0%
	GCTCTGCAATTTACAATCTG+AGG	-	tig0004591:723-742	Msa1340890:CDS	40.0%
!!!	AATAGAATGGGTTTTGGAGG+GGG	+	tig0004591:936-955	Msa1340890:intergenic	40.0%
	GAGAGAGAATGTGAGAATTC+TGG	+	tig0004591:962-981	Msa1340890:intergenic	40.0%
	TTCTCCCCCCACATTAATAA+TGG	-	tig0004591:1018-1037	Msa1340890:intron	40.0%
	AGGTCCATTATTAATGTGGG+GGG	+	tig0004591:1025-1044	Msa1340890:intergenic	40.0%
	TGTGTTAATGAAACCCAGCT+TGG	-	tig0004591:1079-1098	Msa1340890:intron	40.0%
	GTGTTAATGAAACCCAGCTT+GGG	-	tig0004591:1080-1099	Msa1340890:intron	40.0%
	TGTTAATGAAACCCAGCTTG+GGG	-	tig0004591:1081-1100	Msa1340890:intron	40.0%
	GCTTATATATTGTCCTGCAC+TGG	-	tig0004591:1130-1149	Msa1340890:intron	40.0%
	TTTAACTCAGCAATGTCCTG+CGG	+	tig0004591:1163-1182	Msa1340890:intergenic	40.0%
	AACAGCTGCAGCATTTACTT+AGG	+	tig0004591:1232-1251	Msa1340890:intergenic	40.0%
!!!	GCTGCAGCTGTTGATTTTTT+CGG	-	tig0004591:1240-1259	Msa1340890:intron	40.0%
	CTAAATTGTGTTCAGGTGTC+TGG	-	tig0004591:1345-1364	Msa1340890:intron	40.0%
	AAGTCTACTCTATCAGATGG+AGG	+	tig0004591:1663-1682	Msa1340890:intergenic	40.0%
	GGATTGGAGAATCATTGCAA+GGG	+	tig0004591:1866-1885	Msa1340890:intergenic	40.0%
	CAAAGGAAAAGTAGAGGGAT+TGG	+	tig0004591:1882-1901	Msa1340890:intergenic	40.0%
	CCACTCAAAGGAAAAGTAGA+GGG	+	tig0004591:1887-1906	Msa1340890:intergenic	40.0%
	TCCACTCAAAGGAAAAGTAG+AGG	+	tig0004591:1888-1907	Msa1340890:intergenic	40.0%
!	ACAACTTCTGAAGATAGTGC+TGG	+	tig0004591:173-192	Msa1340890:intergenic	40.0%
	AGAACATGTCAACTTGTGCT+TGG	-	tig0004591:230-249	Msa1340890:three_prime_UTR	40.0%
	GAACATGTCAACTTGTGCTT+GGG	-	tig0004591:231-250	Msa1340890:three_prime_UTR	40.0%
	AACATGTCAACTTGTGCTTG+GGG	-	tig0004591:232-251	Msa1340890:three_prime_UTR	40.0%
!	TCCCTATGGTGTTGAATGTT+GGG	+	tig0004591:482-501	Msa1340890:intergenic	40.0%
!	TTCCCTATGGTGTTGAATGT+TGG	+	tig0004591:483-502	Msa1340890:intergenic	40.0%
	ATGGATGAGAAGATTGGAAC+AGG	+	tig0004591:588-607	Msa1340890:intergenic	40.0%
	GCTCTGCAATTTACAATCTG+AGG	-	tig0004591:723-742	Msa1340890:CDS	40.0%
!!!	AATAGAATGGGTTTTGGAGG+GGG	+	tig0004591:936-955	Msa1340890:intergenic	40.0%
	GAGAGAGAATGTGAGAATTC+TGG	+	tig0004591:962-981	Msa1340890:intergenic	40.0%
	TTCTCCCCCCACATTAATAA+TGG	-	tig0004591:1018-1037	Msa1340890:intron	40.0%
	AGGTCCATTATTAATGTGGG+GGG	+	tig0004591:1025-1044	Msa1340890:intergenic	40.0%
	TGTGTTAATGAAACCCAGCT+TGG	-	tig0004591:1079-1098	Msa1340890:intron	40.0%
	GTGTTAATGAAACCCAGCTT+GGG	-	tig0004591:1080-1099	Msa1340890:intron	40.0%
	TGTTAATGAAACCCAGCTTG+GGG	-	tig0004591:1081-1100	Msa1340890:intron	40.0%
	GCTTATATATTGTCCTGCAC+TGG	-	tig0004591:1130-1149	Msa1340890:intron	40.0%
	TTTAACTCAGCAATGTCCTG+CGG	+	tig0004591:1163-1182	Msa1340890:intergenic	40.0%
	AACAGCTGCAGCATTTACTT+AGG	+	tig0004591:1232-1251	Msa1340890:intergenic	40.0%
!!!	GCTGCAGCTGTTGATTTTTT+CGG	-	tig0004591:1240-1259	Msa1340890:intron	40.0%
	CTAAATTGTGTTCAGGTGTC+TGG	-	tig0004591:1345-1364	Msa1340890:intron	40.0%
	AAGTCTACTCTATCAGATGG+AGG	+	tig0004591:1663-1682	Msa1340890:intergenic	40.0%
	GGATTGGAGAATCATTGCAA+GGG	+	tig0004591:1866-1885	Msa1340890:intergenic	40.0%
	CAAAGGAAAAGTAGAGGGAT+TGG	+	tig0004591:1882-1901	Msa1340890:intergenic	40.0%
	CCACTCAAAGGAAAAGTAGA+GGG	+	tig0004591:1887-1906	Msa1340890:intergenic	40.0%
	TCCACTCAAAGGAAAAGTAG+AGG	+	tig0004591:1888-1907	Msa1340890:intergenic	40.0%
!!	CTGAAGATAGTGCTGGCAAA+AGG	+	tig0004591:166-185	Msa1348030:intergenic	45.0%
	TTCAGAAGTTGTTCTCCGTG+TGG	-	tig0004591:181-200	Msa1340890:three_prime_UTR	45.0%
	GTTGAATGTTGGGCAGTGAA+GGG	+	tig0004591:472-491	Msa1340890:intergenic	45.0%
	TGTTGAATGTTGGGCAGTGA+AGG	+	tig0004591:473-492	Msa1340890:intergenic	45.0%
	TGCCCAACATTCAACACCAT+AGG	-	tig0004591:477-496	Msa1340890:three_prime_UTR	45.0%
	GCCCAACATTCAACACCATA+GGG	-	tig0004591:478-497	Msa1340890:three_prime_UTR	45.0%
!	GGAAGCATGGATGAGAAGAT+TGG	+	tig0004591:594-613	Msa1340890:intergenic	45.0%
	CATCAAAGAGCTCAGATCCT+TGG	+	tig0004591:652-671	Msa1340890:intergenic	45.0%
	GCAGAAACGAAGAAGACAGT+TGG	-	tig0004591:790-809	Msa1340890:intron	45.0%
!!!	ATAGAATGGGTTTTGGAGGG+GGG	+	tig0004591:935-954	Msa1340890:intergenic	45.0%
	AATAACAGAATGGGGCACGT+GGG	+	tig0004591:999-1018	Msa1340890:intergenic	45.0%
	AAATAACAGAATGGGGCACG+TGG	+	tig0004591:1000-1019	Msa1340890:intergenic	45.0%
	GGGGGAGAAATAACAGAATG+GGG	+	tig0004591:1007-1026	Msa1340890:intergenic	45.0%
	GGGGGGAGAAATAACAGAAT+GGG	+	tig0004591:1008-1027	Msa1340890:intergenic	45.0%
	TGGGGGGAGAAATAACAGAA+TGG	+	tig0004591:1009-1028	Msa1340890:intergenic	45.0%
	CAATATATGCTCCCCAAGCT+GGG	+	tig0004591:1095-1114	Msa1340890:intergenic	45.0%
	TCAATATATGCTCCCCAAGC+TGG	+	tig0004591:1096-1115	Msa1340890:intergenic	45.0%
	CTTGTGTGCGAATTTGTACC+AGG	+	tig0004591:1441-1460	Msa1340890:intergenic	45.0%
	AGGAAGGCGAAAAAGGGATT+AGG	+	tig0004591:1643-1662	Msa1340890:intergenic	45.0%
	AGATGGAGGAAGGCGAAAAA+GGG	+	tig0004591:1649-1668	Msa1340890:intergenic	45.0%
	CTACTCTATCAGATGGAGGA+AGG	+	tig0004591:1659-1678	Msa1340890:intergenic	45.0%
	TCATTGCAAGGGAGACTACA+TGG	+	tig0004591:1855-1874	Msa1340890:intergenic	45.0%
	GGGATTGGAGAATCATTGCA+AGG	+	tig0004591:1867-1886	Msa1340890:intergenic	45.0%
!!	CCCTCTACTTTTCCTTTGAG+TGG	-	tig0004591:1884-1903	Msa1340890:intron	45.0%
!!	CTGAAGATAGTGCTGGCAAA+AGG	+	tig0004591:166-185	Msa1340890:intergenic	45.0%
	TTCAGAAGTTGTTCTCCGTG+TGG	-	tig0004591:181-200	Msa1340890:three_prime_UTR	45.0%
	GTTGAATGTTGGGCAGTGAA+GGG	+	tig0004591:472-491	Msa1340890:intergenic	45.0%
	TGTTGAATGTTGGGCAGTGA+AGG	+	tig0004591:473-492	Msa1340890:intergenic	45.0%
	TGCCCAACATTCAACACCAT+AGG	-	tig0004591:477-496	Msa1340890:three_prime_UTR	45.0%
	GCCCAACATTCAACACCATA+GGG	-	tig0004591:478-497	Msa1340890:three_prime_UTR	45.0%
!	GGAAGCATGGATGAGAAGAT+TGG	+	tig0004591:594-613	Msa1340890:intergenic	45.0%
	CATCAAAGAGCTCAGATCCT+TGG	+	tig0004591:652-671	Msa1340890:intergenic	45.0%
	GCAGAAACGAAGAAGACAGT+TGG	-	tig0004591:790-809	Msa1340890:intron	45.0%
!!!	ATAGAATGGGTTTTGGAGGG+GGG	+	tig0004591:935-954	Msa1340890:intergenic	45.0%
	AATAACAGAATGGGGCACGT+GGG	+	tig0004591:999-1018	Msa1340890:intergenic	45.0%
	AAATAACAGAATGGGGCACG+TGG	+	tig0004591:1000-1019	Msa1340890:intergenic	45.0%
	GGGGGAGAAATAACAGAATG+GGG	+	tig0004591:1007-1026	Msa1340890:intergenic	45.0%
	GGGGGGAGAAATAACAGAAT+GGG	+	tig0004591:1008-1027	Msa1340890:intergenic	45.0%
	TGGGGGGAGAAATAACAGAA+TGG	+	tig0004591:1009-1028	Msa1340890:intergenic	45.0%
	CAATATATGCTCCCCAAGCT+GGG	+	tig0004591:1095-1114	Msa1340890:intergenic	45.0%
	TCAATATATGCTCCCCAAGC+TGG	+	tig0004591:1096-1115	Msa1340890:intergenic	45.0%
	CTTGTGTGCGAATTTGTACC+AGG	+	tig0004591:1441-1460	Msa1340890:intergenic	45.0%
	AGGAAGGCGAAAAAGGGATT+AGG	+	tig0004591:1643-1662	Msa1340890:intergenic	45.0%
	AGATGGAGGAAGGCGAAAAA+GGG	+	tig0004591:1649-1668	Msa1340890:intergenic	45.0%
	CTACTCTATCAGATGGAGGA+AGG	+	tig0004591:1659-1678	Msa1340890:intergenic	45.0%
	TCATTGCAAGGGAGACTACA+TGG	+	tig0004591:1855-1874	Msa1340890:intergenic	45.0%
	GGGATTGGAGAATCATTGCA+AGG	+	tig0004591:1867-1886	Msa1340890:intergenic	45.0%
!!	CCCTCTACTTTTCCTTTGAG+TGG	-	tig0004591:1884-1903	Msa1340890:intron	45.0%
!!!	TAGAATGGGTTTTGGAGGGG+GGG	+	tig0004591:934-953	Msa1340890:intergenic	50.0%
	ATAACAGAATGGGGCACGTG+GGG	+	tig0004591:998-1017	Msa1340890:intergenic	50.0%
!!!	CTGCGGTTTTTTTCCAGTGC+AGG	+	tig0004591:1146-1165	Msa1340890:intergenic	50.0%
	CTGCACTGGAAAAAAACCGC+AGG	-	tig0004591:1144-1163	Msa1340890:intron	50.0%
	GTCCATCACCTCTAAACACC+TGG	-	tig0004591:1374-1393	Msa1340890:intron	50.0%
	CAGATGGAGGAAGGCGAAAA+AGG	+	tig0004591:1650-1669	Msa1340890:intergenic	50.0%
!!!	TAGAATGGGTTTTGGAGGGG+GGG	+	tig0004591:934-953	Msa1340890:intergenic	50.0%
	ATAACAGAATGGGGCACGTG+GGG	+	tig0004591:998-1017	Msa1340890:intergenic	50.0%
!!!	CTGCGGTTTTTTTCCAGTGC+AGG	+	tig0004591:1146-1165	Msa1340890:intergenic	50.0%
	CTGCACTGGAAAAAAACCGC+AGG	-	tig0004591:1144-1163	Msa1340890:intron	50.0%
	GTCCATCACCTCTAAACACC+TGG	-	tig0004591:1374-1393	Msa1340890:intron	50.0%
	CAGATGGAGGAAGGCGAAAA+AGG	+	tig0004591:1650-1669	Msa1340890:intergenic	50.0%
	GCTTGGGGCTAAAGCAATGC+AGG	-	tig0004591:247-266	Msa1340890:three_prime_UTR	55.0%
	AGGGGGGGTAACAGTATGAG+GGG	+	tig0004591:919-938	Msa1340890:intergenic	55.0%
	GAGGGGGGGTAACAGTATGA+GGG	+	tig0004591:920-939	Msa1340890:intergenic	55.0%
	CGCCAGGTGTTTAGAGGTGA+TGG	+	tig0004591:1379-1398	Msa1340890:intergenic	55.0%
	AGACATTGATCGAGTCGCGC+AGG	-	tig0004591:1611-1630	Msa1340890:intron	55.0%
	GCTTGGGGCTAAAGCAATGC+AGG	-	tig0004591:247-266	Msa1340890:three_prime_UTR	55.0%
	AGGGGGGGTAACAGTATGAG+GGG	+	tig0004591:919-938	Msa1340890:intergenic	55.0%
	GAGGGGGGGTAACAGTATGA+GGG	+	tig0004591:920-939	Msa1340890:intergenic	55.0%
	CGCCAGGTGTTTAGAGGTGA+TGG	+	tig0004591:1379-1398	Msa1340890:intergenic	55.0%
	AGACATTGATCGAGTCGCGC+AGG	-	tig0004591:1611-1630	Msa1340890:intron	55.0%
	GGGGGGGTAACAGTATGAGG+GGG	+	tig0004591:918-937	Msa1340890:intergenic	60.0%
	GGAGGGGGGGTAACAGTATG+AGG	+	tig0004591:921-940	Msa1340890:intergenic	60.0%
	AATGGGGCACGTGGGGTAAG+GGG	+	tig0004591:991-1010	Msa1340890:intergenic	60.0%
	GAATGGGGCACGTGGGGTAA+GGG	+	tig0004591:992-1011	Msa1340890:intergenic	60.0%
	AGAATGGGGCACGTGGGGTA+AGG	+	tig0004591:993-1012	Msa1340890:intergenic	60.0%
	CACCTCTAAACACCTGGCGC+TGG	-	tig0004591:1380-1399	Msa1340890:intron	60.0%
	TGCCAGCGCCAGGTGTTTAG+AGG	+	tig0004591:1385-1404	Msa1340890:intergenic	60.0%
!!	TGACTTGACTTGCCAGCGCC+AGG	+	tig0004591:1395-1414	Msa1340890:intergenic	60.0%
	GGGGGGGTAACAGTATGAGG+GGG	+	tig0004591:918-937	Msa1340890:intergenic	60.0%
	GGAGGGGGGGTAACAGTATG+AGG	+	tig0004591:921-940	Msa1340890:intergenic	60.0%
	AATGGGGCACGTGGGGTAAG+GGG	+	tig0004591:991-1010	Msa1340890:intergenic	60.0%
	GAATGGGGCACGTGGGGTAA+GGG	+	tig0004591:992-1011	Msa1340890:intergenic	60.0%
	AGAATGGGGCACGTGGGGTA+AGG	+	tig0004591:993-1012	Msa1340890:intergenic	60.0%
	CACCTCTAAACACCTGGCGC+TGG	-	tig0004591:1380-1399	Msa1340890:intron	60.0%
	TGCCAGCGCCAGGTGTTTAG+AGG	+	tig0004591:1385-1404	Msa1340890:intergenic	60.0%
!!	TGACTTGACTTGCCAGCGCC+AGG	+	tig0004591:1395-1414	Msa1340890:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
tig0004591	gene	134	2029	134	ID=Msa1340890;Name=Msa1340890
tig0004591	mRNA	134	2029	134	ID=Msa1340890-mRNA-1;Parent=Msa1340890;Name=Msa1340890-mRNA-1;_AED=0.05;_eAED=0.15;_QI=0\|0.5\|0.66\|1\|1\|1\|3\|385\|102
tig0004591	exon	134	610	134	ID=Msa1340890-mRNA-1:exon:2902;Parent=Msa1340890-mRNA-1
tig0004591	exon	722	803	722	ID=Msa1340890-mRNA-1:exon:2901;Parent=Msa1340890-mRNA-1
tig0004591	exon	1895	2029	1895	ID=Msa1340890-mRNA-1:exon:2900;Parent=Msa1340890-mRNA-1
tig0004591	CDS	1895	2029	1895	ID=Msa1340890-mRNA-1:cds;Parent=Msa1340890-mRNA-1
tig0004591	CDS	722	803	722	ID=Msa1340890-mRNA-1:cds;Parent=Msa1340890-mRNA-1
tig0004591	CDS	519	610	519	ID=Msa1340890-mRNA-1:cds;Parent=Msa1340890-mRNA-1
tig0004591	three_prime_UTR	134	518	134	ID=Msa1340890-mRNA-1:three_prime_utr;Parent=Msa1340890-mRNA-1

Gene Sequence	>Msa1340890 ATGTTGTCAGAATACATTGATATGAACAACCTTTTGCCAGCACTATCTTCAGAAGTTGTTCTCCGTGTGGTAGAAATCTTGAAGTGTTTCAACACAAGAACATGTCAACTTGTGCTTGGGGCTAAAGCAATGCAGGTGTCTGGTTTGAAGTCCATCACCTCTAAACACCTGGCGCTGGCAAGTCAAGTCATTAGTTTCATACACGCTATTATTCCTGAAATTCGGCAGATTCTTTTTCTGAAAGTTCCAGAGAATAGAAAATTGCTATTGCTTTCAGACATTGATCGAGTCGCGCAGGTACATACCTAA
Protein sequence	>Msa1340890 MLSEYIDMNNLLPALSSEVVLRVVEILKCFNTRTCQLVLGAKAMQVSGLKSITSKHLALASQVISFIHAIIPEIRQILFLKVPENRKLLLLSDIDRVAQVHT*