Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341370 | XP_003626470.1 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 8.83e-159 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341370 | sp|Q8VYF7|WHY2_ARATH | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 7.23e-90 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341370 | G7L2W4 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 4.22e-159 | 448 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1341370 | TF | Whirly |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0589150 | Msa1341370 | 0.804695 | 1.909543e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341370 | MtrunA17_Chr7g0274781 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 8.12e-163 | 448 |
| Msa1341370 | MtrunA17_Chr5g0416091 | 39.894 | 188 | 109 | 2 | 37 | 222 | 76 | 261 | 2.73e-47 | 156 |
| Msa1341370 | MtrunA17_Chr8g0362331 | 40.244 | 164 | 96 | 1 | 37 | 198 | 75 | 238 | 4.12e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341370 | AT1G71260.1 | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 7.35e-91 | 267 |
| Msa1341370 | AT2G02740.1 | 42.408 | 191 | 100 | 4 | 39 | 222 | 81 | 268 | 1.11e-51 | 168 |
| Msa1341370 | AT1G14410.1 | 40.838 | 191 | 96 | 3 | 42 | 222 | 80 | 263 | 1.72e-51 | 167 |
Find 74 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTATTAATGAATGAAAAT+TGG | 0.106842 | tig0004828:+105322 | None:intergenic |
| GTTTGCGTTGCCACACATTA+TGG | 0.228816 | tig0004828:-102532 | Msa1341370:CDS |
| TGGATTGATAATACACAAAA+TGG | 0.253128 | tig0004828:+102367 | None:intergenic |
| CCACATACCATCCTAGTCTT+TGG | 0.268936 | tig0004828:+102347 | None:intergenic |
| GCTTGCTTCCTTCATCTTCC+AGG | 0.275752 | tig0004828:-105249 | Msa1341370:intron |
| TTGCCCTTGTAAACAGAATA+AGG | 0.288907 | tig0004828:+104954 | None:intergenic |
| AAAATTTGTGAGTTCATCTT+TGG | 0.301520 | tig0004828:+102459 | None:intergenic |
| TTGAGATTTGAGATATTCAT+AGG | 0.312010 | tig0004828:-102157 | Msa1341370:three_prime_UTR |
| GCTATTAATGAATGAAAATT+GGG | 0.319645 | tig0004828:+105323 | None:intergenic |
| AGGAACACTAAAATTCTCTT+TGG | 0.325050 | tig0004828:+103305 | None:intergenic |
| ATGAGTTTCATGCCTGCTAT+TGG | 0.341936 | tig0004828:-104582 | Msa1341370:CDS |
| GAAAGAATTCACATGAATCT+TGG | 0.354145 | tig0004828:+103729 | None:intergenic |
| AAAGAATTCACATGAATCTT+GGG | 0.363397 | tig0004828:+103730 | None:intergenic |
| AAATATTATAGAATTTCATT+TGG | 0.366650 | tig0004828:+102122 | None:intergenic |
| TGAGTTTCATGCCTGCTATT+GGG | 0.372914 | tig0004828:-104581 | Msa1341370:CDS |
| GCAAACTCAGCAGTTGTAAC+AGG | 0.373789 | tig0004828:+103285 | None:intergenic |
| AGGCATGAAACTCATCATTA+TGG | 0.404570 | tig0004828:+104590 | None:intergenic |
| GTGAAACAGGAATCATCTAT+TGG | 0.407409 | tig0004828:-105151 | Msa1341370:intron |
| TTTGCGTTGCCACACATTAT+GGG | 0.408601 | tig0004828:-102531 | Msa1341370:CDS |
| AGCAGAATAGTTGTTATTTG+TGG | 0.411050 | tig0004828:+105098 | None:intergenic |
| TACTGTTGGAAAATATGAAA+TGG | 0.421099 | tig0004828:-102412 | Msa1341370:three_prime_UTR |
| TGCTCCTTATTCTGTTTACA+AGG | 0.424645 | tig0004828:-104958 | Msa1341370:CDS |
| GTTGCCACACATTATGGGTT+GGG | 0.425766 | tig0004828:-102526 | Msa1341370:CDS |
| AACCGACTTCAGTAGCTGAT+AGG | 0.440719 | tig0004828:+103771 | None:intergenic |
| CGTTGCCACACATTATGGGT+TGG | 0.443320 | tig0004828:-102527 | Msa1341370:CDS |
| ATATACCTTGATTTCATTGA+GGG | 0.447907 | tig0004828:+103701 | None:intergenic |
| GTAAATTGTAATATTTAAGA+AGG | 0.449316 | tig0004828:-102314 | Msa1341370:three_prime_UTR |
| GTCGGTTCTTTGATAGCCAT+TGG | 0.458218 | tig0004828:-103755 | Msa1341370:CDS |
| TTCTTATGCTGCAGTAATGC+TGG | 0.463315 | tig0004828:-103519 | Msa1341370:intron |
| TTGGGGAGCGCAAATATGAC+TGG | 0.493872 | tig0004828:-104563 | Msa1341370:CDS |
| GCAGTAATGCTGGTCAAGTA+AGG | 0.498490 | tig0004828:-103509 | Msa1341370:intron |
| AATAACAACTATTCTGCTAA+AGG | 0.500782 | tig0004828:-105093 | Msa1341370:intron |
| TGAGATTTGAGATATTCATA+GGG | 0.512047 | tig0004828:-102156 | Msa1341370:three_prime_UTR |
| AATATACCTTGATTTCATTG+AGG | 0.512495 | tig0004828:+103700 | None:intergenic |
| GAGTTTCATGCCTGCTATTG+GGG | 0.513089 | tig0004828:-104580 | Msa1341370:CDS |
| ATTGGAAGTTCTTTCCGCTA+GGG | 0.516317 | tig0004828:-105133 | Msa1341370:CDS |
| ATGACCCCTCAATGAAATCA+AGG | 0.516531 | tig0004828:-103706 | Msa1341370:intron |
| TTGAAAGCTGACTGTCCCAC+TGG | 0.516551 | tig0004828:+102482 | None:intergenic |
| AATAGACAGTGTCACACATA+CGG | 0.516634 | tig0004828:+102178 | None:intergenic |
| ATTTGAGATATTCATAGGGG+TGG | 0.523214 | tig0004828:-102152 | Msa1341370:three_prime_UTR |
| TGGAATTGACAGCACAAAGA+AGG | 0.524145 | tig0004828:+102387 | None:intergenic |
| TGCAACAAGAGGCACTTAGT+TGG | 0.525081 | tig0004828:+102089 | None:intergenic |
| GCCCTATCAGCTACTGAAGT+CGG | 0.527679 | tig0004828:-103773 | Msa1341370:CDS |
| ACCGACTTCAGTAGCTGATA+GGG | 0.538316 | tig0004828:+103772 | None:intergenic |
| AGGGAGTACCTGGAAGATGA+AGG | 0.540073 | tig0004828:+105241 | None:intergenic |
| TTTAAGAAGGAAGCTTGAGA+AGG | 0.541113 | tig0004828:-102301 | Msa1341370:three_prime_UTR |
| TATTTGCGCTCCCCAATAGC+AGG | 0.541622 | tig0004828:+104570 | None:intergenic |
| TATTGGAAGTTCTTTCCGCT+AGG | 0.545874 | tig0004828:-105134 | Msa1341370:CDS |
| TTACTTTAGTATGCAACAAG+AGG | 0.546089 | tig0004828:+102078 | None:intergenic |
| ACAAAGTAGCCATTGCTATG+AGG | 0.558527 | tig0004828:+103468 | None:intergenic |
| ACATGAATCTTGGGGACCAA+TGG | 0.561311 | tig0004828:+103739 | None:intergenic |
| CCAAAGACTAGGATGGTATG+TGG | 0.561736 | tig0004828:-102347 | Msa1341370:three_prime_UTR |
| TGGGAAAAGTGAGTTACTGT+TGG | 0.566690 | tig0004828:-102426 | Msa1341370:exon |
| CTATTAATGAATGAAAATTG+GGG | 0.568951 | tig0004828:+105324 | None:intergenic |
| TCAATTAAGCCTCATAGCAA+TGG | 0.569726 | tig0004828:-103477 | Msa1341370:CDS |
| ACAAGAGGCACTTAGTTGGA+TGG | 0.574290 | tig0004828:+102093 | None:intergenic |
| ACATCCAACTTAGTAAAAGT+AGG | 0.596084 | tig0004828:+104903 | None:intergenic |
| GAGATTTGAGATATTCATAG+GGG | 0.608018 | tig0004828:-102155 | Msa1341370:three_prime_UTR |
| GCTCCTTATTCTGTTTACAA+GGG | 0.608711 | tig0004828:-104957 | Msa1341370:CDS |
| ATTCTCTTTGGTATTTAACA+CGG | 0.610530 | tig0004828:+103317 | None:intergenic |
| TATACCTTGATTTCATTGAG+GGG | 0.613978 | tig0004828:+103702 | None:intergenic |
| ATAGACAGTGTCACACATAC+GGG | 0.614266 | tig0004828:+102179 | None:intergenic |
| TAACTAATCAGCAGTCCAGT+GGG | 0.621978 | tig0004828:-102497 | Msa1341370:CDS |
| TATCAATCCAAAGACTAGGA+TGG | 0.631463 | tig0004828:-102354 | Msa1341370:three_prime_UTR |
| GTATTATCAATCCAAAGACT+AGG | 0.633141 | tig0004828:-102358 | Msa1341370:three_prime_UTR |
| AAGAATTCACATGAATCTTG+GGG | 0.637953 | tig0004828:+103731 | None:intergenic |
| AAAGAGGCATACACTGCAAG+CGG | 0.640513 | tig0004828:+103251 | None:intergenic |
| TGGGGAGCGCAAATATGACT+GGG | 0.642764 | tig0004828:-104562 | Msa1341370:CDS |
| CTAACTAATCAGCAGTCCAG+TGG | 0.653328 | tig0004828:-102498 | Msa1341370:CDS |
| TTAGTAAAAGTAGGAAGACA+AGG | 0.653333 | tig0004828:+104912 | None:intergenic |
| CGATCCCAACCCATAATGTG+TGG | 0.655749 | tig0004828:+102522 | None:intergenic |
| GTGTTCAATTCAAAATGCTG+AGG | 0.672694 | tig0004828:+105354 | None:intergenic |
| GCTCTTGTTGTTGATCGTCG+CGG | 0.693088 | tig0004828:-104615 | Msa1341370:CDS |
| GGCAGTAGAGAAATCCCTAG+CGG | 0.738730 | tig0004828:+105119 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATAGAATTTCATT+TGG | + | tig0004828:105326-105345 | None:intergenic | 10.0% |
| !!! | TTTATTATGATGCATTTTTA+TGG | - | tig0004828:102403-102422 | Msa1341370:three_prime_UTR | 15.0% |
| !!! | TTTAAATACATTCCTTTTTA+CGG | - | tig0004828:102585-102604 | Msa1341370:intron | 15.0% |
| !! | AAAACATTGTTTAAATACTA+TGG | - | tig0004828:103109-103128 | Msa1341370:intron | 15.0% |
| !! | GTAAATTGTAATATTTAAGA+AGG | - | tig0004828:105131-105150 | Msa1341370:CDS | 15.0% |
| !! | CTATTAATGAATGAAAATTG+GGG | + | tig0004828:102124-102143 | None:intergenic | 20.0% |
| !! | GCTATTAATGAATGAAAATT+GGG | + | tig0004828:102125-102144 | None:intergenic | 20.0% |
| !! | TACTATTATTATTGTGAAAC+AGG | - | tig0004828:102281-102300 | Msa1341370:three_prime_UTR | 20.0% |
| !! | AGGAATGTATTTAAATGATT+AGG | + | tig0004828:102580-102599 | None:intergenic | 20.0% |
| !! | AAGAAAGAAGAAAGAATAAA+AGG | + | tig0004828:102933-102952 | None:intergenic | 20.0% |
| !! | TCTCTATTACAAAATAAGAA+AGG | + | tig0004828:103509-103528 | None:intergenic | 20.0% |
| !! | TCAACAAACAAAAAAACTAA+TGG | + | tig0004828:103866-103885 | None:intergenic | 20.0% |
| !!! | TTTTAATACATTGGGTATTT+GGG | - | tig0004828:104037-104056 | Msa1341370:intron | 20.0% |
| !! | TAAAAATGTTGAATCAAGTT+TGG | + | tig0004828:104475-104494 | None:intergenic | 20.0% |
| ! | CGCTATTAATGAATGAAAAT+TGG | + | tig0004828:102126-102145 | None:intergenic | 25.0% |
| ! | AATAACAACTATTCTGCTAA+AGG | - | tig0004828:102352-102371 | Msa1341370:three_prime_UTR | 25.0% |
| ! | ATATTATATGCTTCACTTTC+AGG | - | tig0004828:102443-102462 | Msa1341370:CDS | 25.0% |
| ! | GAATAAGCTATTTGTATAAG+CGG | + | tig0004828:102721-102740 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+TGG | - | tig0004828:102756-102775 | Msa1341370:intron | 25.0% |
| ! | ATTACAAGTTTACAAAGTAG+TGG | - | tig0004828:103137-103156 | Msa1341370:intron | 25.0% |
| ! | TTAAATACTACAGTTGTAGT+AGG | - | tig0004828:103226-103245 | Msa1341370:intron | 25.0% |
| !!! | TTAAGAGCATTTTATTGTCT+CGG | - | tig0004828:103412-103431 | Msa1341370:intron | 25.0% |
| ! | TAAAAGTTGAAAACATGAAG+CGG | + | tig0004828:103482-103501 | None:intergenic | 25.0% |
| ! | AGAATAACATATTGTCAACT+TGG | - | tig0004828:103526-103545 | Msa1341370:intron | 25.0% |
| ! | AAAGAATTCACATGAATCTT+GGG | + | tig0004828:103718-103737 | None:intergenic | 25.0% |
| ! | ATATACCTTGATTTCATTGA+GGG | + | tig0004828:103747-103766 | None:intergenic | 25.0% |
| ! | AATATACCTTGATTTCATTG+AGG | + | tig0004828:103748-103767 | None:intergenic | 25.0% |
| ! | GTATATTTCATGATTCTCTA+GGG | - | tig0004828:103761-103780 | Msa1341370:CDS | 25.0% |
| ! | TCTCTCATGAGATAATTAAT+TGG | + | tig0004828:103801-103820 | None:intergenic | 25.0% |
| ! | GTCACTAATTAACTTTCAAA+TGG | + | tig0004828:103896-103915 | None:intergenic | 25.0% |
| !! | TTGTTCACCTTTTAATACAT+TGG | - | tig0004828:104028-104047 | Msa1341370:intron | 25.0% |
| !! | TGTTCACCTTTTAATACATT+GGG | - | tig0004828:104029-104048 | Msa1341370:intron | 25.0% |
| ! | CAAATACCCAATGTATTAAA+AGG | + | tig0004828:104038-104057 | None:intergenic | 25.0% |
| !! | CTTTTAATACATTGGGTATT+TGG | - | tig0004828:104036-104055 | Msa1341370:intron | 25.0% |
| ! | ATTCTCTTTGGTATTTAACA+CGG | + | tig0004828:104131-104150 | None:intergenic | 25.0% |
| ! | TGTCTTAAATAACAATGAAG+TGG | - | tig0004828:104299-104318 | Msa1341370:intron | 25.0% |
| !! | TTACACTTTTATTGTCATTC+CGG | - | tig0004828:104527-104546 | Msa1341370:intron | 25.0% |
| !!! | TTTTGTTTTCAGGTAATGAT+TGG | - | tig0004828:104589-104608 | Msa1341370:CDS | 25.0% |
| ! | TTCAAAAATTGCAGTTAACT+AGG | + | tig0004828:104730-104749 | None:intergenic | 25.0% |
| !! | TTAAAAGCACAAGTATGATT+GGG | + | tig0004828:104848-104867 | None:intergenic | 25.0% |
| !! | ATTAAAAGCACAAGTATGAT+TGG | + | tig0004828:104849-104868 | None:intergenic | 25.0% |
| ! | AAAATTTGTGAGTTCATCTT+TGG | + | tig0004828:104989-105008 | None:intergenic | 25.0% |
| ! | TACTGTTGGAAAATATGAAA+TGG | - | tig0004828:105033-105052 | Msa1341370:intron | 25.0% |
| !! | TGGATTGATAATACACAAAA+TGG | + | tig0004828:105081-105100 | None:intergenic | 25.0% |
| ! | AAGCAGAAAAAGAATAAACA+AGG | + | tig0004828:105216-105235 | None:intergenic | 25.0% |
| !! | TTGAGATTTGAGATATTCAT+AGG | - | tig0004828:105288-105307 | Msa1341370:five_prime_UTR | 25.0% |
| !! | TGAGATTTGAGATATTCATA+GGG | - | tig0004828:105289-105308 | Msa1341370:five_prime_UTR | 25.0% |
| GAAAGAATGAAAGAGATTGA+AGG | + | tig0004828:102230-102249 | None:intergenic | 30.0% | |
| !! | AGCAGAATAGTTGTTATTTG+TGG | + | tig0004828:102350-102369 | None:intergenic | 30.0% |
| TTAGTAAAAGTAGGAAGACA+AGG | + | tig0004828:102536-102555 | None:intergenic | 30.0% | |
| !! | TCTTCCTACTTTTACTAAGT+TGG | - | tig0004828:102538-102557 | Msa1341370:intron | 30.0% |
| ACATCCAACTTAGTAAAAGT+AGG | + | tig0004828:102545-102564 | None:intergenic | 30.0% | |
| ! | AAATACATTCCTTTTTACGG+TGG | - | tig0004828:102588-102607 | Msa1341370:intron | 30.0% |
| ! | AATTCCATTTGTTACAGTCT+GGG | - | tig0004828:102807-102826 | Msa1341370:intron | 30.0% |
| AATTGTGTTTACGTCTATTG+TGG | - | tig0004828:103041-103060 | Msa1341370:intron | 30.0% | |
| AAGAGTTTAAAGAGACATGA+GGG | + | tig0004828:103394-103413 | None:intergenic | 30.0% | |
| TAAGAGTTTAAAGAGACATG+AGG | + | tig0004828:103395-103414 | None:intergenic | 30.0% | |
| !!! | TAAGAGCATTTTATTGTCTC+GGG | - | tig0004828:103413-103432 | Msa1341370:intron | 30.0% |
| AACTTCCGAAACAATGTATT+AGG | + | tig0004828:103552-103571 | None:intergenic | 30.0% | |
| AAGTTCTACTTGATACTTGT+AGG | - | tig0004828:103567-103586 | Msa1341370:intron | 30.0% | |
| AAGAATTCACATGAATCTTG+GGG | + | tig0004828:103717-103736 | None:intergenic | 30.0% | |
| GAAAGAATTCACATGAATCT+TGG | + | tig0004828:103719-103738 | None:intergenic | 30.0% | |
| TATACCTTGATTTCATTGAG+GGG | + | tig0004828:103746-103765 | None:intergenic | 30.0% | |
| GGTATATTTCATGATTCTCT+AGG | - | tig0004828:103760-103779 | Msa1341370:CDS | 30.0% | |
| ATCTCATGAGAGAACTATAT+AGG | - | tig0004828:103808-103827 | Msa1341370:intron | 30.0% | |
| AGGAACACTAAAATTCTCTT+TGG | + | tig0004828:104143-104162 | None:intergenic | 30.0% | |
| GTGTAACGTAATGACATAAT+GGG | + | tig0004828:104242-104261 | None:intergenic | 30.0% | |
| TACACCTTTCACAAGTTATA+TGG | - | tig0004828:104257-104276 | Msa1341370:intron | 30.0% | |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | - | tig0004828:104341-104360 | Msa1341370:intron | 30.0% |
| CCTGAAAACAAAACAATAGT+CGG | + | tig0004828:104582-104601 | None:intergenic | 30.0% | |
| TCCAGAATCAGATAAAATAG+GGG | + | tig0004828:104825-104844 | None:intergenic | 30.0% | |
| GTCCAGAATCAGATAAAATA+GGG | + | tig0004828:104826-104845 | None:intergenic | 30.0% | |
| ! | GAACTCACAAATTTTAGACT+TGG | - | tig0004828:104994-105013 | Msa1341370:intron | 30.0% |
| ! | ACAAATTTTAGACTTGGAGT+GGG | - | tig0004828:105000-105019 | Msa1341370:intron | 30.0% |
| GTATTATCAATCCAAAGACT+AGG | - | tig0004828:105087-105106 | Msa1341370:intron | 30.0% | |
| !! | TTTCTGCTTTTGTTTACTTC+AGG | - | tig0004828:105227-105246 | Msa1341370:intron | 30.0% |
| ! | GAGATTTGAGATATTCATAG+GGG | - | tig0004828:105290-105309 | Msa1341370:five_prime_UTR | 30.0% |
| GAATGAAAGAGATTGAAGGA+GGG | + | tig0004828:102226-102245 | None:intergenic | 35.0% | |
| AGAATGAAAGAGATTGAAGG+AGG | + | tig0004828:102227-102246 | None:intergenic | 35.0% | |
| GTGAAACAGGAATCATCTAT+TGG | - | tig0004828:102294-102313 | Msa1341370:three_prime_UTR | 35.0% | |
| TGCTCCTTATTCTGTTTACA+AGG | - | tig0004828:102487-102506 | Msa1341370:CDS | 35.0% | |
| GCTCCTTATTCTGTTTACAA+GGG | - | tig0004828:102488-102507 | Msa1341370:CDS | 35.0% | |
| TTGCCCTTGTAAACAGAATA+AGG | + | tig0004828:102494-102513 | None:intergenic | 35.0% | |
| AAAAACCAACCACCGTAAAA+AGG | + | tig0004828:102600-102619 | None:intergenic | 35.0% | |
| !!! | TTTTACGGTGGTTGGTTTTT+AGG | - | tig0004828:102600-102619 | Msa1341370:intron | 35.0% |
| !!! | TTTACGGTGGTTGGTTTTTA+GGG | - | tig0004828:102601-102620 | Msa1341370:intron | 35.0% |
| !!! | GTTGGTTTTTAGGGTTTGTT+TGG | - | tig0004828:102610-102629 | Msa1341370:intron | 35.0% |
| ! | CAGATTAGTTAGACCATGTT+TGG | + | tig0004828:102772-102791 | None:intergenic | 35.0% |
| ! | CAATTCCATTTGTTACAGTC+TGG | - | tig0004828:102806-102825 | Msa1341370:intron | 35.0% |
| ! | ATTCCATTTGTTACAGTCTG+GGG | - | tig0004828:102808-102827 | Msa1341370:intron | 35.0% |
| AGGCATGAAACTCATCATTA+TGG | + | tig0004828:102858-102877 | None:intergenic | 35.0% | |
| CGAAGATTGATCATGAAGTT+CGG | - | tig0004828:103016-103035 | Msa1341370:intron | 35.0% | |
| ! | GAGAAAAGATCTGTTGACTA+TGG | + | tig0004828:103371-103390 | None:intergenic | 35.0% |
| AGAGTTTAAAGAGACATGAG+GGG | + | tig0004828:103393-103412 | None:intergenic | 35.0% | |
| CTTGGCCTAATACATTGTTT+CGG | - | tig0004828:103544-103563 | Msa1341370:intron | 35.0% | |
| TTCTACTTGATACTTGTAGG+AGG | - | tig0004828:103570-103589 | Msa1341370:intron | 35.0% | |
| !! | TCTCTAGGGTTAGTAATTGA+TGG | - | tig0004828:103775-103794 | Msa1341370:CDS | 35.0% |
| TCAATTAAGCCTCATAGCAA+TGG | - | tig0004828:103968-103987 | Msa1341370:intron | 35.0% | |
| AAGAGGGAGACAAAATCATA+AGG | + | tig0004828:104090-104109 | None:intergenic | 35.0% | |
| TTAACAACAGCTGTCAAAGA+GGG | + | tig0004828:104106-104125 | None:intergenic | 35.0% | |
| TGAGAAACTAAGCAGAAAAG+AGG | + | tig0004828:104213-104232 | None:intergenic | 35.0% | |
| GGTGTAACGTAATGACATAA+TGG | + | tig0004828:104243-104262 | None:intergenic | 35.0% | |
| ! | AGGACCATATAACTTGTGAA+AGG | + | tig0004828:104264-104283 | None:intergenic | 35.0% |
| AGACATGAAAAGCAGAAACT+AGG | + | tig0004828:104284-104303 | None:intergenic | 35.0% | |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | - | tig0004828:104345-104364 | Msa1341370:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | - | tig0004828:104346-104365 | Msa1341370:intron | 35.0% |
| ! | TTTTATTGTCATTCCGGAAC+TGG | - | tig0004828:104533-104552 | Msa1341370:intron | 35.0% |
| !!! | CCGACTATTGTTTTGTTTTC+AGG | - | tig0004828:104579-104598 | Msa1341370:CDS | 35.0% |
| ! | ACTGCAATTTTTGAATGCGT+TGG | - | tig0004828:104735-104754 | Msa1341370:intron | 35.0% |
| AATCAGATAAAATAGGGGGT+GGG | + | tig0004828:104820-104839 | None:intergenic | 35.0% | |
| CCAGAATCAGATAAAATAGG+GGG | + | tig0004828:104824-104843 | None:intergenic | 35.0% | |
| GGTCCAGAATCAGATAAAAT+AGG | + | tig0004828:104827-104846 | None:intergenic | 35.0% | |
| ! | CACAAATTTTAGACTTGGAG+TGG | - | tig0004828:104999-105018 | Msa1341370:intron | 35.0% |
| TATCAATCCAAAGACTAGGA+TGG | - | tig0004828:105091-105110 | Msa1341370:intron | 35.0% | |
| TTTAAGAAGGAAGCTTGAGA+AGG | - | tig0004828:105144-105163 | Msa1341370:CDS | 35.0% | |
| AATAGACAGTGTCACACATA+CGG | + | tig0004828:105270-105289 | None:intergenic | 35.0% | |
| ! | ATTTGAGATATTCATAGGGG+TGG | - | tig0004828:105293-105312 | Msa1341370:five_prime_UTR | 35.0% |
| TATTGGAAGTTCTTTCCGCT+AGG | - | tig0004828:102311-102330 | Msa1341370:three_prime_UTR | 40.0% | |
| ATTGGAAGTTCTTTCCGCTA+GGG | - | tig0004828:102312-102331 | Msa1341370:three_prime_UTR | 40.0% | |
| ! | ACATTCCTTTTTACGGTGGT+TGG | - | tig0004828:102592-102611 | Msa1341370:intron | 40.0% |
| ATGAGTTTCATGCCTGCTAT+TGG | - | tig0004828:102863-102882 | Msa1341370:intron | 40.0% | |
| TGAGTTTCATGCCTGCTATT+GGG | - | tig0004828:102864-102883 | Msa1341370:intron | 40.0% | |
| CACAATTGACAGAACTCTCA+TGG | + | tig0004828:103186-103205 | None:intergenic | 40.0% | |
| ATGACCCCTCAATGAAATCA+AGG | - | tig0004828:103739-103758 | Msa1341370:CDS | 40.0% | |
| TTCTTATGCTGCAGTAATGC+TGG | - | tig0004828:103926-103945 | Msa1341370:intron | 40.0% | |
| ACAAAGTAGCCATTGCTATG+AGG | + | tig0004828:103980-103999 | None:intergenic | 40.0% | |
| CTACTTTGTCTCTCTGTGTA+AGG | - | tig0004828:103991-104010 | Msa1341370:intron | 40.0% | |
| GTTAACAACAGCTGTCAAAG+AGG | + | tig0004828:104107-104126 | None:intergenic | 40.0% | |
| ! | GTGTTGCTAAATGGTACACT+AGG | + | tig0004828:104401-104420 | None:intergenic | 40.0% |
| AGTGTACCATTTAGCAACAC+AGG | - | tig0004828:104401-104420 | Msa1341370:intron | 40.0% | |
| ! | ACAAGTCCTGTGTTGCTAAA+TGG | + | tig0004828:104410-104429 | None:intergenic | 40.0% |
| ACTCGCGTATATGAAGTTTC+AGG | - | tig0004828:104656-104675 | Msa1341370:intron | 40.0% | |
| CCAGCGAAGTTAAAAAACCA+GGG | + | tig0004828:104770-104789 | None:intergenic | 40.0% | |
| ACCAGCGAAGTTAAAAAACC+AGG | + | tig0004828:104771-104790 | None:intergenic | 40.0% | |
| ATCAGATAAAATAGGGGGTG+GGG | + | tig0004828:104819-104838 | None:intergenic | 40.0% | |
| GAATCAGATAAAATAGGGGG+TGG | + | tig0004828:104821-104840 | None:intergenic | 40.0% | |
| ! | CCCCCTATTTTATCTGATTC+TGG | - | tig0004828:104821-104840 | Msa1341370:intron | 40.0% |
| TTTGCGTTGCCACACATTAT+GGG | - | tig0004828:104914-104933 | Msa1341370:CDS | 40.0% | |
| TAACTAATCAGCAGTCCAGT+GGG | - | tig0004828:104948-104967 | Msa1341370:CDS | 40.0% | |
| TGGGAAAAGTGAGTTACTGT+TGG | - | tig0004828:105019-105038 | Msa1341370:intron | 40.0% | |
| TGGAATTGACAGCACAAAGA+AGG | + | tig0004828:105061-105080 | None:intergenic | 40.0% | |
| ATAGACAGTGTCACACATAC+GGG | + | tig0004828:105269-105288 | None:intergenic | 40.0% | |
| TAAGCGCTCGTGAAACTCAT+TGG | - | tig0004828:102671-102690 | Msa1341370:intron | 45.0% | |
| GAGTTTCATGCCTGCTATTG+GGG | - | tig0004828:102865-102884 | Msa1341370:intron | 45.0% | |
| GGACTATGCTATGCTCGTTT+AGG | - | tig0004828:103158-103177 | Msa1341370:intron | 45.0% | |
| ! | ACCGACTTCAGTAGCTGATA+GGG | + | tig0004828:103676-103695 | None:intergenic | 45.0% |
| ! | AACCGACTTCAGTAGCTGAT+AGG | + | tig0004828:103677-103696 | None:intergenic | 45.0% |
| ! | GTCGGTTCTTTGATAGCCAT+TGG | - | tig0004828:103690-103709 | Msa1341370:intron | 45.0% |
| ACATGAATCTTGGGGACCAA+TGG | + | tig0004828:103709-103728 | None:intergenic | 45.0% | |
| GCAGTAATGCTGGTCAAGTA+AGG | - | tig0004828:103936-103955 | Msa1341370:intron | 45.0% | |
| GCAAACTCAGCAGTTGTAAC+AGG | + | tig0004828:104163-104182 | None:intergenic | 45.0% | |
| ! | AAAGAGGCATACACTGCAAG+CGG | + | tig0004828:104197-104216 | None:intergenic | 45.0% |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | - | tig0004828:104349-104368 | Msa1341370:intron | 45.0% |
| CAGGACTTGTCATGCAACAT+TGG | - | tig0004828:104420-104439 | Msa1341370:intron | 45.0% | |
| TATGCCATGTCTGGTCAAGT+TGG | - | tig0004828:104556-104575 | Msa1341370:CDS | 45.0% | |
| !!! | CCCTGGTTTTTTAACTTCGC+TGG | - | tig0004828:104767-104786 | Msa1341370:intron | 45.0% |
| GTTTGCGTTGCCACACATTA+TGG | - | tig0004828:104913-104932 | Msa1341370:CDS | 45.0% | |
| GTTGCCACACATTATGGGTT+GGG | - | tig0004828:104919-104938 | Msa1341370:CDS | 45.0% | |
| CTAACTAATCAGCAGTCCAG+TGG | - | tig0004828:104947-104966 | Msa1341370:CDS | 45.0% | |
| ! | CCACATACCATCCTAGTCTT+TGG | + | tig0004828:105101-105120 | None:intergenic | 45.0% |
| CCAAAGACTAGGATGGTATG+TGG | - | tig0004828:105098-105117 | Msa1341370:CDS | 45.0% | |
| !! | ACAAGAGGCACTTAGTTGGA+TGG | + | tig0004828:105355-105374 | None:intergenic | 45.0% |
| GCTTGCTTCCTTCATCTTCC+AGG | - | tig0004828:102196-102215 | Msa1341370:three_prime_UTR | 50.0% | |
| !! | AGGGAGTACCTGGAAGATGA+AGG | + | tig0004828:102207-102226 | None:intergenic | 50.0% |
| !! | AGATTGAAGGAGGGAGTACC+TGG | + | tig0004828:102217-102236 | None:intergenic | 50.0% |
| GGCAGTAGAGAAATCCCTAG+CGG | + | tig0004828:102329-102348 | None:intergenic | 50.0% | |
| GAGCCCCAGACTGTAACAAA+TGG | + | tig0004828:102814-102833 | None:intergenic | 50.0% | |
| !! | GCTCTTGTTGTTGATCGTCG+CGG | - | tig0004828:102830-102849 | Msa1341370:intron | 50.0% |
| TATTTGCGCTCCCCAATAGC+AGG | + | tig0004828:102878-102897 | None:intergenic | 50.0% | |
| ! | TTGGGGAGCGCAAATATGAC+TGG | - | tig0004828:102882-102901 | Msa1341370:intron | 50.0% |
| ! | TGGGGAGCGCAAATATGACT+GGG | - | tig0004828:102883-102902 | Msa1341370:intron | 50.0% |
| TGTATCGTAGCAGAGCGAGT+GGG | + | tig0004828:103271-103290 | None:intergenic | 50.0% | |
| GCCCTATCAGCTACTGAAGT+CGG | - | tig0004828:103672-103691 | Msa1341370:intron | 50.0% | |
| CAGACATGGCATACCAGTTC+CGG | + | tig0004828:104549-104568 | None:intergenic | 50.0% | |
| ! | TGCGTTGGTCTGTTATTCCC+TGG | - | tig0004828:104750-104769 | Msa1341370:intron | 50.0% |
| CGTTGCCACACATTATGGGT+TGG | - | tig0004828:104918-104937 | Msa1341370:CDS | 50.0% | |
| CGATCCCAACCCATAATGTG+TGG | + | tig0004828:104926-104945 | None:intergenic | 50.0% | |
| TTGAAAGCTGACTGTCCCAC+TGG | + | tig0004828:104966-104985 | None:intergenic | 50.0% | |
| GTGTATCGTAGCAGAGCGAG+TGG | + | tig0004828:103272-103291 | None:intergenic | 55.0% | |
| ! | ACCACGCAAGCAAGCTTGCT+GGG | + | tig0004828:103444-103463 | None:intergenic | 55.0% |
| CGGAACTGGTATGCCATGTC+TGG | - | tig0004828:104547-104566 | Msa1341370:intron | 55.0% | |
| TCGGCCAACTTGACCAGACA+TGG | + | tig0004828:104563-104582 | None:intergenic | 55.0% | |
| GACCACGCAAGCAAGCTTGC+TGG | + | tig0004828:103445-103464 | None:intergenic | 60.0% | |
| ! | GCAAGCTTGCTTGCGTGGTC+AGG | - | tig0004828:103445-103464 | Msa1341370:intron | 60.0% |
| TAGCAGAGCGAGTGGGCGCA+AGG | + | tig0004828:103264-103283 | None:intergenic | 65.0% | |
| ! | GCCCAGCAAGCTTGCTTGCG+TGG | - | tig0004828:103440-103459 | Msa1341370:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004828 | gene | 102093 | 105374 | 102093 | ID=Msa1341370;Name=Msa1341370 |
| tig0004828 | mRNA | 102093 | 105374 | 102093 | ID=Msa1341370-mRNA-1;Parent=Msa1341370;Name=Msa1341370-mRNA-1;_AED=0.08;_eAED=0.08;_QI=87|1|1|1|1|1|8|344|222 |
| tig0004828 | exon | 102093 | 102553 | 102093 | ID=Msa1341370-mRNA-1:exon:3204;Parent=Msa1341370-mRNA-1 |
| tig0004828 | exon | 103263 | 103351 | 103263 | ID=Msa1341370-mRNA-1:exon:3203;Parent=Msa1341370-mRNA-1 |
| tig0004828 | exon | 103460 | 103527 | 103460 | ID=Msa1341370-mRNA-1:exon:3202;Parent=Msa1341370-mRNA-1 |
| tig0004828 | exon | 103707 | 103801 | 103707 | ID=Msa1341370-mRNA-1:exon:3201;Parent=Msa1341370-mRNA-1 |
| tig0004828 | exon | 104551 | 104643 | 104551 | ID=Msa1341370-mRNA-1:exon:3200;Parent=Msa1341370-mRNA-1 |
| tig0004828 | exon | 104905 | 105002 | 104905 | ID=Msa1341370-mRNA-1:exon:3199;Parent=Msa1341370-mRNA-1 |
| tig0004828 | exon | 105094 | 105164 | 105094 | ID=Msa1341370-mRNA-1:exon:3198;Parent=Msa1341370-mRNA-1 |
| tig0004828 | exon | 105250 | 105374 | 105250 | ID=Msa1341370-mRNA-1:exon:3197;Parent=Msa1341370-mRNA-1 |
| tig0004828 | five_prime_UTR | 105288 | 105374 | 105288 | ID=Msa1341370-mRNA-1:five_prime_utr;Parent=Msa1341370-mRNA-1 |
| tig0004828 | CDS | 105250 | 105287 | 105250 | ID=Msa1341370-mRNA-1:cds;Parent=Msa1341370-mRNA-1 |
| tig0004828 | CDS | 105094 | 105164 | 105094 | ID=Msa1341370-mRNA-1:cds;Parent=Msa1341370-mRNA-1 |
| tig0004828 | CDS | 104905 | 105002 | 104905 | ID=Msa1341370-mRNA-1:cds;Parent=Msa1341370-mRNA-1 |
| tig0004828 | CDS | 104551 | 104643 | 104551 | ID=Msa1341370-mRNA-1:cds;Parent=Msa1341370-mRNA-1 |
| tig0004828 | CDS | 103707 | 103801 | 103707 | ID=Msa1341370-mRNA-1:cds;Parent=Msa1341370-mRNA-1 |
| tig0004828 | CDS | 103460 | 103527 | 103460 | ID=Msa1341370-mRNA-1:cds;Parent=Msa1341370-mRNA-1 |
| tig0004828 | CDS | 103263 | 103351 | 103263 | ID=Msa1341370-mRNA-1:cds;Parent=Msa1341370-mRNA-1 |
| tig0004828 | CDS | 102437 | 102553 | 102437 | ID=Msa1341370-mRNA-1:cds;Parent=Msa1341370-mRNA-1 |
| tig0004828 | three_prime_UTR | 102093 | 102436 | 102093 | ID=Msa1341370-mRNA-1:three_prime_utr;Parent=Msa1341370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
