Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341700 | AES82802.1 | 92.204 | 372 | 24 | 2 | 1 | 368 | 1 | 371 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341700 | G7L524 | 92.204 | 372 | 24 | 2 | 1 | 368 | 1 | 371 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1341700 | Msa1408240 | 0.955505 | 2.600791e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341700 | MtrunA17_Chr7g0276061 | 92.204 | 372 | 24 | 2 | 1 | 368 | 1 | 371 | 0.0 | 574 |
| Msa1341700 | MtrunA17_Chr8g0346341 | 56.667 | 120 | 32 | 5 | 240 | 357 | 103 | 204 | 1.47e-33 | 124 |
| Msa1341700 | MtrunA17_Chr1g0155291 | 35.398 | 113 | 66 | 3 | 242 | 353 | 424 | 530 | 1.56e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1341700 | AT2G46630.1 | 44.203 | 138 | 62 | 6 | 240 | 365 | 255 | 389 | 5.54e-21 | 94.0 |
Find 103 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTCTTGTGAAGATAAT+TGG | 0.109828 | tig0004834:+474 | None:intergenic |
| CTTGAGGTTGAGTCTGATTA+TGG | 0.175568 | tig0004834:+1112 | None:intergenic |
| AATTGGGTTGGTGTTTCTTT+TGG | 0.183209 | tig0004834:+491 | None:intergenic |
| GTGGGTGTGGGTGCAGGTGC+GGG | 0.277086 | tig0004834:+1234 | None:intergenic |
| TTCAGGTGCAGGTGCGGGTG+GGG | 0.285712 | tig0004834:+1191 | None:intergenic |
| GCTGGTGTGGGTGTGGGTGC+AGG | 0.298801 | tig0004834:+1228 | None:intergenic |
| GAAGATGATGAAGAAGAATT+AGG | 0.309558 | tig0004834:+1039 | None:intergenic |
| CTATGTCTCTACCCACATTT+AGG | 0.309930 | tig0004834:-1158 | Msa1341700:CDS |
| CCCTTCTTGTGAAGATAATT+GGG | 0.311460 | tig0004834:+475 | None:intergenic |
| TTCTGAACTAGCACTGCTTT+TGG | 0.313190 | tig0004834:+766 | None:intergenic |
| GGAAAACAGAGGAGCTTATA+TGG | 0.317793 | tig0004834:-527 | Msa1341700:CDS |
| TGCAGGTGCTGGTGTGGGTG+TGG | 0.319992 | tig0004834:+1221 | None:intergenic |
| GGTTCAGGTGCAGGTGCGGG+TGG | 0.332941 | tig0004834:+1189 | None:intergenic |
| TGTGGGTGTGGGTGCAGGTG+CGG | 0.357240 | tig0004834:+1233 | None:intergenic |
| TCAGGTGCAGGTGCGGGTGG+GGG | 0.358748 | tig0004834:+1192 | None:intergenic |
| GAGTCTGATTATGGGGTGAT+GGG | 0.359148 | tig0004834:+1121 | None:intergenic |
| ACGTTCGGTTTAATAGTCTT+TGG | 0.359350 | tig0004834:+913 | None:intergenic |
| GACATAGTAGGGCGTGGTTC+AGG | 0.373905 | tig0004834:+1174 | None:intergenic |
| TGCATTGGGCTACGAACGTT+CGG | 0.374244 | tig0004834:+898 | None:intergenic |
| GCAGGTGCTGGTGTGGGTGT+GGG | 0.380001 | tig0004834:+1222 | None:intergenic |
| TTGAGGTTGAGTCTGATTAT+GGG | 0.380841 | tig0004834:+1113 | None:intergenic |
| CACCTTCATCTCCACCTCAT+AGG | 0.381169 | tig0004834:-1071 | Msa1341700:CDS |
| AAGCGGAACCATGGACGAAC+CGG | 0.389062 | tig0004834:+1270 | None:intergenic |
| TGCAGGTGCAGGTGCTGGTG+TGG | 0.395173 | tig0004834:+1215 | None:intergenic |
| AACCAACACTTCTCGTGTTC+CGG | 0.396666 | tig0004834:-950 | Msa1341700:CDS |
| TCTCTCTCAAAGAAGCCATT+TGG | 0.399385 | tig0004834:-247 | Msa1341700:CDS |
| GCAGGTGCAGGTGCTGGTGT+GGG | 0.401925 | tig0004834:+1216 | None:intergenic |
| TGGGTGTGGGTGCAGGTGCG+GGG | 0.412596 | tig0004834:+1235 | None:intergenic |
| GGGTGCAGGTGCGGGGCGAA+TGG | 0.413550 | tig0004834:+1242 | None:intergenic |
| ATGAGAGTGATAACAATTGC+AGG | 0.419920 | tig0004834:-550 | Msa1341700:CDS |
| GAGAGAGAAAGACGCACTCC+TGG | 0.423604 | tig0004834:+262 | None:intergenic |
| GTTCAGGTGCAGGTGCGGGT+GGG | 0.425079 | tig0004834:+1190 | None:intergenic |
| CGTGGTTCAGGTGCAGGTGC+GGG | 0.426829 | tig0004834:+1186 | None:intergenic |
| GGGTGGTGAATTAGTGGATC+TGG | 0.434785 | tig0004834:+864 | None:intergenic |
| TGAGTCTGATTATGGGGTGA+TGG | 0.436864 | tig0004834:+1120 | None:intergenic |
| GAATTAGTGGATCTGGCATT+TGG | 0.451368 | tig0004834:+871 | None:intergenic |
| AGGAGAGGGTGGTGAATTAG+TGG | 0.453591 | tig0004834:+858 | None:intergenic |
| CTGGCATTTGGTGAATGCAT+TGG | 0.462954 | tig0004834:+883 | None:intergenic |
| TTTGGAGATTGAGTGGGAAC+CGG | 0.464354 | tig0004834:+931 | None:intergenic |
| GCGTGGTTCAGGTGCAGGTG+CGG | 0.470049 | tig0004834:+1185 | None:intergenic |
| TGGCATTTGGTGAATGCATT+GGG | 0.470617 | tig0004834:+884 | None:intergenic |
| ACATGGTAGCCTTCACCAAA+TGG | 0.474053 | tig0004834:+232 | None:intergenic |
| GTAGGGCGTGGTTCAGGTGC+AGG | 0.475066 | tig0004834:+1180 | None:intergenic |
| TTACCATTGTGCCATGGCTT+AGG | 0.475397 | tig0004834:+730 | None:intergenic |
| CACAGCAATTCTTCTCATCA+TGG | 0.475750 | tig0004834:-643 | Msa1341700:CDS |
| CCCAATTATCTTCACAAGAA+GGG | 0.488334 | tig0004834:-475 | Msa1341700:CDS |
| AGTCTGATTATGGGGTGATG+GGG | 0.488996 | tig0004834:+1122 | None:intergenic |
| TGTGAAGGTGGGAGTGTCAA+AGG | 0.492299 | tig0004834:+838 | None:intergenic |
| GGGAACTCAATCAAAGTTGA+TGG | 0.492455 | tig0004834:-454 | Msa1341700:CDS |
| AGTTCAAGTGCTGCTGATGA+AGG | 0.492625 | tig0004834:-418 | Msa1341700:CDS |
| TCTTGCTCCCATCATGATCC+AGG | 0.495065 | tig0004834:-280 | Msa1341700:CDS |
| GGGAGTGTCAAAGGAGAGGG+TGG | 0.507355 | tig0004834:+847 | None:intergenic |
| AAGCCATGGCACAATGGTAA+TGG | 0.508476 | tig0004834:-727 | Msa1341700:CDS |
| TGCAGGTGCGGGGCGAATGG+AGG | 0.508684 | tig0004834:+1245 | None:intergenic |
| ACCTTCATCTCCACCTCATA+GGG | 0.510763 | tig0004834:-1070 | Msa1341700:CDS |
| TGGTAATGGTGAATTGCATA+AGG | 0.513321 | tig0004834:-713 | Msa1341700:CDS |
| GGTGGGAGTGTCAAAGGAGA+GGG | 0.522337 | tig0004834:+844 | None:intergenic |
| AATAGTCTTTGGAGATTGAG+TGG | 0.525306 | tig0004834:+924 | None:intergenic |
| ACCCTATGAGGTGGAGATGA+AGG | 0.528952 | tig0004834:+1069 | None:intergenic |
| ACCCAATTATCTTCACAAGA+AGG | 0.530296 | tig0004834:-476 | Msa1341700:CDS |
| GGAAAACACATTACTGTGAA+AGG | 0.530467 | tig0004834:-622 | Msa1341700:CDS |
| ATATTCAAGCAGTTCTTCCC+CGG | 0.532117 | tig0004834:-983 | Msa1341700:CDS |
| CTGTTCATGTATGCAGCCAC+TGG | 0.547118 | tig0004834:+343 | None:intergenic |
| AGCGGAACCATGGACGAACC+GGG | 0.556022 | tig0004834:+1271 | None:intergenic |
| GACGCACTCCTGGATCATGA+TGG | 0.556155 | tig0004834:+272 | None:intergenic |
| ATAGTCTTTGGAGATTGAGT+GGG | 0.557607 | tig0004834:+925 | None:intergenic |
| GTCTGATTATGGGGTGATGG+GGG | 0.564191 | tig0004834:+1123 | None:intergenic |
| CCAATTATCTTCACAAGAAG+GGG | 0.566640 | tig0004834:-474 | Msa1341700:CDS |
| TCTTGTGAAGATAATTGGGT+TGG | 0.570901 | tig0004834:+479 | None:intergenic |
| AACAAAATCTTCAATTCCAG+TGG | 0.572005 | tig0004834:-359 | Msa1341700:CDS |
| TCAAAGAAGCCATTTGGTGA+AGG | 0.573315 | tig0004834:-241 | Msa1341700:CDS |
| GAGAATCAAAATCACAGCAA+TGG | 0.579509 | tig0004834:-691 | Msa1341700:CDS |
| CACCATGGCTAACCCACCCC+CGG | 0.579888 | tig0004834:-1289 | None:intergenic |
| AGGTGGGAGTGTCAAAGGAG+AGG | 0.583156 | tig0004834:+843 | None:intergenic |
| ACAGCAATGGTGAATTCCAT+AGG | 0.585190 | tig0004834:-678 | Msa1341700:CDS |
| TTAGGAAACACAACCCTATG+AGG | 0.585401 | tig0004834:+1057 | None:intergenic |
| CATCAACATGTTCCTTCACA+TGG | 0.586375 | tig0004834:+215 | None:intergenic |
| ACGCACTCCTGGATCATGAT+GGG | 0.586922 | tig0004834:+273 | None:intergenic |
| AACCGGAACACGAGAAGTGT+TGG | 0.588543 | tig0004834:+948 | None:intergenic |
| TGAGGTTGAGTCTGATTATG+GGG | 0.588990 | tig0004834:+1114 | None:intergenic |
| CGGGGCGAATGGAGGTTAAG+CGG | 0.592260 | tig0004834:+1253 | None:intergenic |
| CGGAACCATGGACGAACCGG+GGG | 0.594450 | tig0004834:+1273 | None:intergenic |
| TGCTGAAGCAGTCCTAAATG+TGG | 0.594757 | tig0004834:+1146 | None:intergenic |
| TCACCATTACCATTGTGCCA+TGG | 0.607922 | tig0004834:+724 | None:intergenic |
| TGAGAGTGATAACAATTGCA+GGG | 0.608043 | tig0004834:-549 | Msa1341700:CDS |
| ATGGAGGTTAAGCGGAACCA+TGG | 0.613366 | tig0004834:+1261 | None:intergenic |
| AAGAAAGATAAGAATAACAA+AGG | 0.616117 | tig0004834:-385 | Msa1341700:CDS |
| GGTAGAGACATAGTAGGGCG+TGG | 0.617892 | tig0004834:+1168 | None:intergenic |
| CTGTTGACGTGCCTAAGCCA+TGG | 0.618080 | tig0004834:-741 | Msa1341700:CDS |
| TTGAATAGGAGAAGATGGCA+TGG | 0.621598 | tig0004834:+1017 | None:intergenic |
| GCGGAACCATGGACGAACCG+GGG | 0.624097 | tig0004834:+1272 | None:intergenic |
| AATGTGGGTAGAGACATAGT+AGG | 0.625071 | tig0004834:+1162 | None:intergenic |
| ATGTGGGTAGAGACATAGTA+GGG | 0.627160 | tig0004834:+1163 | None:intergenic |
| GGAAACACAACCCTATGAGG+TGG | 0.640536 | tig0004834:+1060 | None:intergenic |
| TGGTGAAGGCTACCATGTGA+AGG | 0.643403 | tig0004834:-227 | Msa1341700:CDS |
| GCTGAAGCAGTCCTAAATGT+GGG | 0.645297 | tig0004834:+1147 | None:intergenic |
| AACTCAATCAAAGTTGATGG+TGG | 0.654385 | tig0004834:-451 | Msa1341700:CDS |
| TTCTAATAAGATACCAGTGG+AGG | 0.656030 | tig0004834:-794 | Msa1341700:CDS |
| GAAAGGAAGAGAAACCAGCA+AGG | 0.662752 | tig0004834:-605 | Msa1341700:CDS |
| GAGAGTGATAACAATTGCAG+GGG | 0.668996 | tig0004834:-548 | Msa1341700:CDS |
| GTGCCTAAGCCATGGCACAA+TGG | 0.670210 | tig0004834:-733 | Msa1341700:CDS |
| ACATTCTAATAAGATACCAG+TGG | 0.692149 | tig0004834:-797 | Msa1341700:CDS |
| ACAATTGCAGGGGAAAACAG+AGG | 0.700335 | tig0004834:-538 | Msa1341700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAGATAAGAATAACAA+AGG | - | tig0004834:1101-1120 | Msa1341700:CDS | 20.0% |
| !! | AAGAAAGATAAGAATAACAA+AGG | - | tig0004834:1101-1120 | Msa1341700:CDS | 20.0% |
| !! | TATTGTGTTGTCTTTTGAAT+AGG | + | tig0004834:486-505 | None:intergenic | 25.0% |
| !!! | GAAAAAGTTTTTAGATTCTG+AGG | - | tig0004834:905-924 | Msa1341700:CDS | 25.0% |
| !! | TATTGTGTTGTCTTTTGAAT+AGG | + | tig0004834:486-505 | None:intergenic | 25.0% |
| !!! | GAAAAAGTTTTTAGATTCTG+AGG | - | tig0004834:905-924 | Msa1341700:CDS | 25.0% |
| ! | TGTTCTGTTTTCTTTTCTTG+AGG | + | tig0004834:393-412 | None:intergenic | 30.0% |
| GAAGATGATGAAGAAGAATT+AGG | + | tig0004834:450-469 | None:intergenic | 30.0% | |
| ACATTCTAATAAGATACCAG+TGG | - | tig0004834:689-708 | Msa1341700:CDS | 30.0% | |
| !! | TAAAAACTTTTTCTCCTTGC+TGG | + | tig0004834:898-917 | None:intergenic | 30.0% |
| AACAAAATCTTCAATTCCAG+TGG | - | tig0004834:1127-1146 | Msa1341700:CDS | 30.0% | |
| ! | TGTTCTGTTTTCTTTTCTTG+AGG | + | tig0004834:393-412 | None:intergenic | 30.0% |
| GAAGATGATGAAGAAGAATT+AGG | + | tig0004834:450-469 | None:intergenic | 30.0% | |
| ACATTCTAATAAGATACCAG+TGG | - | tig0004834:689-708 | Msa1341700:CDS | 30.0% | |
| !! | TAAAAACTTTTTCTCCTTGC+TGG | + | tig0004834:898-917 | None:intergenic | 30.0% |
| AACAAAATCTTCAATTCCAG+TGG | - | tig0004834:1127-1146 | Msa1341700:CDS | 30.0% | |
| TTGAGGTTGAGTCTGATTAT+GGG | + | tig0004834:376-395 | None:intergenic | 35.0% | |
| ! | GTCTTTTGAATAGGAGAAGA+TGG | + | tig0004834:477-496 | None:intergenic | 35.0% |
| ! | ATAGTCTTTGGAGATTGAGT+GGG | + | tig0004834:564-583 | None:intergenic | 35.0% |
| ! | AATAGTCTTTGGAGATTGAG+TGG | + | tig0004834:565-584 | None:intergenic | 35.0% |
| ACGTTCGGTTTAATAGTCTT+TGG | + | tig0004834:576-595 | None:intergenic | 35.0% | |
| !!! | GAGTTTTGAATTGTGAAGGT+GGG | + | tig0004834:662-681 | None:intergenic | 35.0% |
| !!! | TCACGAGTTTTGAATTGTGA+AGG | + | tig0004834:666-685 | None:intergenic | 35.0% |
| TTCTAATAAGATACCAGTGG+AGG | - | tig0004834:692-711 | Msa1341700:CDS | 35.0% | |
| !! | TGGTAATGGTGAATTGCATA+AGG | - | tig0004834:773-792 | Msa1341700:CDS | 35.0% |
| GAGAATCAAAATCACAGCAA+TGG | - | tig0004834:795-814 | Msa1341700:CDS | 35.0% | |
| GGAAAACACATTACTGTGAA+AGG | - | tig0004834:864-883 | Msa1341700:CDS | 35.0% | |
| !! | TTTTTAGATTCTGAGGACTC+TGG | - | tig0004834:912-931 | Msa1341700:CDS | 35.0% |
| ATGAGAGTGATAACAATTGC+AGG | - | tig0004834:936-955 | Msa1341700:CDS | 35.0% | |
| TGAGAGTGATAACAATTGCA+GGG | - | tig0004834:937-956 | Msa1341700:CDS | 35.0% | |
| !!! | ATTGGGTTGGTGTTTCTTTT+GGG | + | tig0004834:997-1016 | None:intergenic | 35.0% |
| !!! | AATTGGGTTGGTGTTTCTTT+TGG | + | tig0004834:998-1017 | None:intergenic | 35.0% |
| TCTTGTGAAGATAATTGGGT+TGG | + | tig0004834:1010-1029 | None:intergenic | 35.0% | |
| ACCCAATTATCTTCACAAGA+AGG | - | tig0004834:1010-1029 | Msa1341700:CDS | 35.0% | |
| CCCTTCTTGTGAAGATAATT+GGG | + | tig0004834:1014-1033 | None:intergenic | 35.0% | |
| CCCAATTATCTTCACAAGAA+GGG | - | tig0004834:1011-1030 | Msa1341700:CDS | 35.0% | |
| CCAATTATCTTCACAAGAAG+GGG | - | tig0004834:1012-1031 | Msa1341700:CDS | 35.0% | |
| !! | AACTCAATCAAAGTTGATGG+TGG | - | tig0004834:1035-1054 | Msa1341700:CDS | 35.0% |
| TTGAGGTTGAGTCTGATTAT+GGG | + | tig0004834:376-395 | None:intergenic | 35.0% | |
| ! | GTCTTTTGAATAGGAGAAGA+TGG | + | tig0004834:477-496 | None:intergenic | 35.0% |
| ! | ATAGTCTTTGGAGATTGAGT+GGG | + | tig0004834:564-583 | None:intergenic | 35.0% |
| ! | AATAGTCTTTGGAGATTGAG+TGG | + | tig0004834:565-584 | None:intergenic | 35.0% |
| ACGTTCGGTTTAATAGTCTT+TGG | + | tig0004834:576-595 | None:intergenic | 35.0% | |
| !!! | GAGTTTTGAATTGTGAAGGT+GGG | + | tig0004834:662-681 | None:intergenic | 35.0% |
| !!! | TCACGAGTTTTGAATTGTGA+AGG | + | tig0004834:666-685 | None:intergenic | 35.0% |
| TTCTAATAAGATACCAGTGG+AGG | - | tig0004834:692-711 | Msa1341700:CDS | 35.0% | |
| !! | TGGTAATGGTGAATTGCATA+AGG | - | tig0004834:773-792 | Msa1341700:CDS | 35.0% |
| GAGAATCAAAATCACAGCAA+TGG | - | tig0004834:795-814 | Msa1341700:CDS | 35.0% | |
| GGAAAACACATTACTGTGAA+AGG | - | tig0004834:864-883 | Msa1341700:CDS | 35.0% | |
| !! | TTTTTAGATTCTGAGGACTC+TGG | - | tig0004834:912-931 | Msa1341700:CDS | 35.0% |
| ATGAGAGTGATAACAATTGC+AGG | - | tig0004834:936-955 | Msa1341700:CDS | 35.0% | |
| TGAGAGTGATAACAATTGCA+GGG | - | tig0004834:937-956 | Msa1341700:CDS | 35.0% | |
| !!! | ATTGGGTTGGTGTTTCTTTT+GGG | + | tig0004834:997-1016 | None:intergenic | 35.0% |
| !!! | AATTGGGTTGGTGTTTCTTT+TGG | + | tig0004834:998-1017 | None:intergenic | 35.0% |
| TCTTGTGAAGATAATTGGGT+TGG | + | tig0004834:1010-1029 | None:intergenic | 35.0% | |
| ACCCAATTATCTTCACAAGA+AGG | - | tig0004834:1010-1029 | Msa1341700:CDS | 35.0% | |
| CCCTTCTTGTGAAGATAATT+GGG | + | tig0004834:1014-1033 | None:intergenic | 35.0% | |
| CCCAATTATCTTCACAAGAA+GGG | - | tig0004834:1011-1030 | Msa1341700:CDS | 35.0% | |
| CCAATTATCTTCACAAGAAG+GGG | - | tig0004834:1012-1031 | Msa1341700:CDS | 35.0% | |
| !! | AACTCAATCAAAGTTGATGG+TGG | - | tig0004834:1035-1054 | Msa1341700:CDS | 35.0% |
| ATGTGGGTAGAGACATAGTA+GGG | + | tig0004834:326-345 | None:intergenic | 40.0% | |
| AATGTGGGTAGAGACATAGT+AGG | + | tig0004834:327-346 | None:intergenic | 40.0% | |
| CTATGTCTCTACCCACATTT+AGG | - | tig0004834:328-347 | Msa1341700:CDS | 40.0% | |
| TGAGGTTGAGTCTGATTATG+GGG | + | tig0004834:375-394 | None:intergenic | 40.0% | |
| CTTGAGGTTGAGTCTGATTA+TGG | + | tig0004834:377-396 | None:intergenic | 40.0% | |
| TTAGGAAACACAACCCTATG+AGG | + | tig0004834:432-451 | None:intergenic | 40.0% | |
| TTGAATAGGAGAAGATGGCA+TGG | + | tig0004834:472-491 | None:intergenic | 40.0% | |
| ATATTCAAGCAGTTCTTCCC+CGG | - | tig0004834:503-522 | Msa1341700:CDS | 40.0% | |
| !! | TGTTGGTTGTAGTTTTCTCC+GGG | + | tig0004834:524-543 | None:intergenic | 40.0% |
| !!! | GTGTTGGTTGTAGTTTTCTC+CGG | + | tig0004834:525-544 | None:intergenic | 40.0% |
| ! | TGGCATTTGGTGAATGCATT+GGG | + | tig0004834:605-624 | None:intergenic | 40.0% |
| ! | GAATTAGTGGATCTGGCATT+TGG | + | tig0004834:618-637 | None:intergenic | 40.0% |
| !!! | CGAGTTTTGAATTGTGAAGG+TGG | + | tig0004834:663-682 | None:intergenic | 40.0% |
| ! | TTCTGAACTAGCACTGCTTT+TGG | + | tig0004834:723-742 | None:intergenic | 40.0% |
| ACAGCAATGGTGAATTCCAT+AGG | - | tig0004834:808-827 | Msa1341700:CDS | 40.0% | |
| !! | TGTGATTTTGAGTCTGCCTA+TGG | + | tig0004834:827-846 | None:intergenic | 40.0% |
| CACAGCAATTCTTCTCATCA+TGG | - | tig0004834:843-862 | Msa1341700:CDS | 40.0% | |
| GAGAGTGATAACAATTGCAG+GGG | - | tig0004834:938-957 | Msa1341700:CDS | 40.0% | |
| GGAAAACAGAGGAGCTTATA+TGG | - | tig0004834:959-978 | Msa1341700:CDS | 40.0% | |
| CCCCTTCTTGTGAAGATAAT+TGG | + | tig0004834:1015-1034 | None:intergenic | 40.0% | |
| GGGAACTCAATCAAAGTTGA+TGG | - | tig0004834:1032-1051 | Msa1341700:CDS | 40.0% | |
| TCTCTCTCAAAGAAGCCATT+TGG | - | tig0004834:1239-1258 | Msa1341700:CDS | 40.0% | |
| ! | TCAAAGAAGCCATTTGGTGA+AGG | - | tig0004834:1245-1264 | Msa1341700:CDS | 40.0% |
| CATCAACATGTTCCTTCACA+TGG | + | tig0004834:1274-1293 | None:intergenic | 40.0% | |
| ATGTGGGTAGAGACATAGTA+GGG | + | tig0004834:326-345 | None:intergenic | 40.0% | |
| AATGTGGGTAGAGACATAGT+AGG | + | tig0004834:327-346 | None:intergenic | 40.0% | |
| CTATGTCTCTACCCACATTT+AGG | - | tig0004834:328-347 | Msa1341700:CDS | 40.0% | |
| TGAGGTTGAGTCTGATTATG+GGG | + | tig0004834:375-394 | None:intergenic | 40.0% | |
| CTTGAGGTTGAGTCTGATTA+TGG | + | tig0004834:377-396 | None:intergenic | 40.0% | |
| TTAGGAAACACAACCCTATG+AGG | + | tig0004834:432-451 | None:intergenic | 40.0% | |
| TTGAATAGGAGAAGATGGCA+TGG | + | tig0004834:472-491 | None:intergenic | 40.0% | |
| ATATTCAAGCAGTTCTTCCC+CGG | - | tig0004834:503-522 | Msa1341700:CDS | 40.0% | |
| !! | TGTTGGTTGTAGTTTTCTCC+GGG | + | tig0004834:524-543 | None:intergenic | 40.0% |
| !!! | GTGTTGGTTGTAGTTTTCTC+CGG | + | tig0004834:525-544 | None:intergenic | 40.0% |
| ! | TGGCATTTGGTGAATGCATT+GGG | + | tig0004834:605-624 | None:intergenic | 40.0% |
| ! | GAATTAGTGGATCTGGCATT+TGG | + | tig0004834:618-637 | None:intergenic | 40.0% |
| !!! | CGAGTTTTGAATTGTGAAGG+TGG | + | tig0004834:663-682 | None:intergenic | 40.0% |
| ! | TTCTGAACTAGCACTGCTTT+TGG | + | tig0004834:723-742 | None:intergenic | 40.0% |
| ACAGCAATGGTGAATTCCAT+AGG | - | tig0004834:808-827 | Msa1341700:CDS | 40.0% | |
| !! | TGTGATTTTGAGTCTGCCTA+TGG | + | tig0004834:827-846 | None:intergenic | 40.0% |
| CACAGCAATTCTTCTCATCA+TGG | - | tig0004834:843-862 | Msa1341700:CDS | 40.0% | |
| GAGAGTGATAACAATTGCAG+GGG | - | tig0004834:938-957 | Msa1341700:CDS | 40.0% | |
| GGAAAACAGAGGAGCTTATA+TGG | - | tig0004834:959-978 | Msa1341700:CDS | 40.0% | |
| CCCCTTCTTGTGAAGATAAT+TGG | + | tig0004834:1015-1034 | None:intergenic | 40.0% | |
| GGGAACTCAATCAAAGTTGA+TGG | - | tig0004834:1032-1051 | Msa1341700:CDS | 40.0% | |
| TCTCTCTCAAAGAAGCCATT+TGG | - | tig0004834:1239-1258 | Msa1341700:CDS | 40.0% | |
| ! | TCAAAGAAGCCATTTGGTGA+AGG | - | tig0004834:1245-1264 | Msa1341700:CDS | 40.0% |
| CATCAACATGTTCCTTCACA+TGG | + | tig0004834:1274-1293 | None:intergenic | 40.0% | |
| GCTGAAGCAGTCCTAAATGT+GGG | + | tig0004834:342-361 | None:intergenic | 45.0% | |
| TGCTGAAGCAGTCCTAAATG+TGG | + | tig0004834:343-362 | None:intergenic | 45.0% | |
| AGTCTGATTATGGGGTGATG+GGG | + | tig0004834:367-386 | None:intergenic | 45.0% | |
| GAGTCTGATTATGGGGTGAT+GGG | + | tig0004834:368-387 | None:intergenic | 45.0% | |
| TGAGTCTGATTATGGGGTGA+TGG | + | tig0004834:369-388 | None:intergenic | 45.0% | |
| ACCTTCATCTCCACCTCATA+GGG | - | tig0004834:416-435 | Msa1341700:CDS | 45.0% | |
| ! | GTTGGTTGTAGTTTTCTCCG+GGG | + | tig0004834:523-542 | None:intergenic | 45.0% |
| AACCAACACTTCTCGTGTTC+CGG | - | tig0004834:536-555 | Msa1341700:CDS | 45.0% | |
| TTTGGAGATTGAGTGGGAAC+CGG | + | tig0004834:558-577 | None:intergenic | 45.0% | |
| ! | CTGGCATTTGGTGAATGCAT+TGG | + | tig0004834:606-625 | None:intergenic | 45.0% |
| TTACCATTGTGCCATGGCTT+AGG | + | tig0004834:759-778 | None:intergenic | 45.0% | |
| AAGCCATGGCACAATGGTAA+TGG | - | tig0004834:759-778 | Msa1341700:CDS | 45.0% | |
| TCACCATTACCATTGTGCCA+TGG | + | tig0004834:765-784 | None:intergenic | 45.0% | |
| GAAAGGAAGAGAAACCAGCA+AGG | - | tig0004834:881-900 | Msa1341700:CDS | 45.0% | |
| ACAATTGCAGGGGAAAACAG+AGG | - | tig0004834:948-967 | Msa1341700:CDS | 45.0% | |
| ! | AGTTCAAGTGCTGCTGATGA+AGG | - | tig0004834:1068-1087 | Msa1341700:CDS | 45.0% |
| ACATGGTAGCCTTCACCAAA+TGG | + | tig0004834:1257-1276 | None:intergenic | 45.0% | |
| GCTGAAGCAGTCCTAAATGT+GGG | + | tig0004834:342-361 | None:intergenic | 45.0% | |
| TGCTGAAGCAGTCCTAAATG+TGG | + | tig0004834:343-362 | None:intergenic | 45.0% | |
| AGTCTGATTATGGGGTGATG+GGG | + | tig0004834:367-386 | None:intergenic | 45.0% | |
| GAGTCTGATTATGGGGTGAT+GGG | + | tig0004834:368-387 | None:intergenic | 45.0% | |
| TGAGTCTGATTATGGGGTGA+TGG | + | tig0004834:369-388 | None:intergenic | 45.0% | |
| ACCTTCATCTCCACCTCATA+GGG | - | tig0004834:416-435 | Msa1341700:CDS | 45.0% | |
| ! | GTTGGTTGTAGTTTTCTCCG+GGG | + | tig0004834:523-542 | None:intergenic | 45.0% |
| AACCAACACTTCTCGTGTTC+CGG | - | tig0004834:536-555 | Msa1341700:CDS | 45.0% | |
| TTTGGAGATTGAGTGGGAAC+CGG | + | tig0004834:558-577 | None:intergenic | 45.0% | |
| ! | CTGGCATTTGGTGAATGCAT+TGG | + | tig0004834:606-625 | None:intergenic | 45.0% |
| TTACCATTGTGCCATGGCTT+AGG | + | tig0004834:759-778 | None:intergenic | 45.0% | |
| AAGCCATGGCACAATGGTAA+TGG | - | tig0004834:759-778 | Msa1341700:CDS | 45.0% | |
| TCACCATTACCATTGTGCCA+TGG | + | tig0004834:765-784 | None:intergenic | 45.0% | |
| GAAAGGAAGAGAAACCAGCA+AGG | - | tig0004834:881-900 | Msa1341700:CDS | 45.0% | |
| ACAATTGCAGGGGAAAACAG+AGG | - | tig0004834:948-967 | Msa1341700:CDS | 45.0% | |
| ! | AGTTCAAGTGCTGCTGATGA+AGG | - | tig0004834:1068-1087 | Msa1341700:CDS | 45.0% |
| ACATGGTAGCCTTCACCAAA+TGG | + | tig0004834:1257-1276 | None:intergenic | 45.0% | |
| ATGGAGGTTAAGCGGAACCA+TGG | + | tig0004834:228-247 | None:intergenic | 50.0% | |
| ! | GTCTGATTATGGGGTGATGG+GGG | + | tig0004834:366-385 | None:intergenic | 50.0% |
| CACCTTCATCTCCACCTCAT+AGG | - | tig0004834:415-434 | Msa1341700:CDS | 50.0% | |
| ACCCTATGAGGTGGAGATGA+AGG | + | tig0004834:420-439 | None:intergenic | 50.0% | |
| GGAAACACAACCCTATGAGG+TGG | + | tig0004834:429-448 | None:intergenic | 50.0% | |
| ! | AACCGGAACACGAGAAGTGT+TGG | + | tig0004834:541-560 | None:intergenic | 50.0% |
| TGCATTGGGCTACGAACGTT+CGG | + | tig0004834:591-610 | None:intergenic | 50.0% | |
| ! | GGGTGGTGAATTAGTGGATC+TGG | + | tig0004834:625-644 | None:intergenic | 50.0% |
| AGGAGAGGGTGGTGAATTAG+TGG | + | tig0004834:631-650 | None:intergenic | 50.0% | |
| !! | TGTGAAGGTGGGAGTGTCAA+AGG | + | tig0004834:651-670 | None:intergenic | 50.0% |
| CTGTTCATGTATGCAGCCAC+TGG | + | tig0004834:1146-1165 | None:intergenic | 50.0% | |
| TCTTGCTCCCATCATGATCC+AGG | - | tig0004834:1206-1225 | Msa1341700:CDS | 50.0% | |
| ACGCACTCCTGGATCATGAT+GGG | + | tig0004834:1216-1235 | None:intergenic | 50.0% | |
| TGGTGAAGGCTACCATGTGA+AGG | - | tig0004834:1259-1278 | Msa1341700:CDS | 50.0% | |
| ATGGAGGTTAAGCGGAACCA+TGG | + | tig0004834:228-247 | None:intergenic | 50.0% | |
| ! | GTCTGATTATGGGGTGATGG+GGG | + | tig0004834:366-385 | None:intergenic | 50.0% |
| CACCTTCATCTCCACCTCAT+AGG | - | tig0004834:415-434 | Msa1341700:CDS | 50.0% | |
| ACCCTATGAGGTGGAGATGA+AGG | + | tig0004834:420-439 | None:intergenic | 50.0% | |
| GGAAACACAACCCTATGAGG+TGG | + | tig0004834:429-448 | None:intergenic | 50.0% | |
| ! | AACCGGAACACGAGAAGTGT+TGG | + | tig0004834:541-560 | None:intergenic | 50.0% |
| TGCATTGGGCTACGAACGTT+CGG | + | tig0004834:591-610 | None:intergenic | 50.0% | |
| ! | GGGTGGTGAATTAGTGGATC+TGG | + | tig0004834:625-644 | None:intergenic | 50.0% |
| AGGAGAGGGTGGTGAATTAG+TGG | + | tig0004834:631-650 | None:intergenic | 50.0% | |
| !! | TGTGAAGGTGGGAGTGTCAA+AGG | + | tig0004834:651-670 | None:intergenic | 50.0% |
| CTGTTCATGTATGCAGCCAC+TGG | + | tig0004834:1146-1165 | None:intergenic | 50.0% | |
| TCTTGCTCCCATCATGATCC+AGG | - | tig0004834:1206-1225 | Msa1341700:CDS | 50.0% | |
| ACGCACTCCTGGATCATGAT+GGG | + | tig0004834:1216-1235 | None:intergenic | 50.0% | |
| TGGTGAAGGCTACCATGTGA+AGG | - | tig0004834:1259-1278 | Msa1341700:CDS | 50.0% | |
| AAGCGGAACCATGGACGAAC+CGG | + | tig0004834:219-238 | None:intergenic | 55.0% | |
| GACATAGTAGGGCGTGGTTC+AGG | + | tig0004834:315-334 | None:intergenic | 55.0% | |
| GGTAGAGACATAGTAGGGCG+TGG | + | tig0004834:321-340 | None:intergenic | 55.0% | |
| !! | GGTGGGAGTGTCAAAGGAGA+GGG | + | tig0004834:645-664 | None:intergenic | 55.0% |
| !! | AGGTGGGAGTGTCAAAGGAG+AGG | + | tig0004834:646-665 | None:intergenic | 55.0% |
| CTGTTGACGTGCCTAAGCCA+TGG | - | tig0004834:745-764 | Msa1341700:CDS | 55.0% | |
| GTGCCTAAGCCATGGCACAA+TGG | - | tig0004834:753-772 | Msa1341700:CDS | 55.0% | |
| GACGCACTCCTGGATCATGA+TGG | + | tig0004834:1217-1236 | None:intergenic | 55.0% | |
| GAGAGAGAAAGACGCACTCC+TGG | + | tig0004834:1227-1246 | None:intergenic | 55.0% | |
| AAGCGGAACCATGGACGAAC+CGG | + | tig0004834:219-238 | None:intergenic | 55.0% | |
| GACATAGTAGGGCGTGGTTC+AGG | + | tig0004834:315-334 | None:intergenic | 55.0% | |
| GGTAGAGACATAGTAGGGCG+TGG | + | tig0004834:321-340 | None:intergenic | 55.0% | |
| !! | GGTGGGAGTGTCAAAGGAGA+GGG | + | tig0004834:645-664 | None:intergenic | 55.0% |
| !! | AGGTGGGAGTGTCAAAGGAG+AGG | + | tig0004834:646-665 | None:intergenic | 55.0% |
| CTGTTGACGTGCCTAAGCCA+TGG | - | tig0004834:745-764 | Msa1341700:CDS | 55.0% | |
| GTGCCTAAGCCATGGCACAA+TGG | - | tig0004834:753-772 | Msa1341700:CDS | 55.0% | |
| GACGCACTCCTGGATCATGA+TGG | + | tig0004834:1217-1236 | None:intergenic | 55.0% | |
| GAGAGAGAAAGACGCACTCC+TGG | + | tig0004834:1227-1246 | None:intergenic | 55.0% | |
| AGCGGAACCATGGACGAACC+GGG | + | tig0004834:218-237 | None:intergenic | 60.0% | |
| CGGGGCGAATGGAGGTTAAG+CGG | + | tig0004834:236-255 | None:intergenic | 60.0% | |
| !! | GGGAGTGTCAAAGGAGAGGG+TGG | + | tig0004834:642-661 | None:intergenic | 60.0% |
| !!! | GCTTTTGGCTCTGCCTCCAC+TGG | + | tig0004834:708-727 | None:intergenic | 60.0% |
| AGCGGAACCATGGACGAACC+GGG | + | tig0004834:218-237 | None:intergenic | 60.0% | |
| CGGGGCGAATGGAGGTTAAG+CGG | + | tig0004834:236-255 | None:intergenic | 60.0% | |
| !! | GGGAGTGTCAAAGGAGAGGG+TGG | + | tig0004834:642-661 | None:intergenic | 60.0% |
| !!! | GCTTTTGGCTCTGCCTCCAC+TGG | + | tig0004834:708-727 | None:intergenic | 60.0% |
| ACCATGGACGAACCGGGGGT+GGG | + | tig0004834:212-231 | None:intergenic | 65.0% | |
| AACCATGGACGAACCGGGGG+TGG | + | tig0004834:213-232 | None:intergenic | 65.0% | |
| CGGAACCATGGACGAACCGG+GGG | + | tig0004834:216-235 | None:intergenic | 65.0% | |
| GCGGAACCATGGACGAACCG+GGG | + | tig0004834:217-236 | None:intergenic | 65.0% | |
| TGTGGGTGTGGGTGCAGGTG+CGG | + | tig0004834:256-275 | None:intergenic | 65.0% | |
| !! | GCAGGTGCTGGTGTGGGTGT+GGG | + | tig0004834:267-286 | None:intergenic | 65.0% |
| !! | TGCAGGTGCTGGTGTGGGTG+TGG | + | tig0004834:268-287 | None:intergenic | 65.0% |
| !! | GCAGGTGCAGGTGCTGGTGT+GGG | + | tig0004834:273-292 | None:intergenic | 65.0% |
| !! | TGCAGGTGCAGGTGCTGGTG+TGG | + | tig0004834:274-293 | None:intergenic | 65.0% |
| TTCAGGTGCAGGTGCGGGTG+GGG | + | tig0004834:298-317 | None:intergenic | 65.0% | |
| GTTCAGGTGCAGGTGCGGGT+GGG | + | tig0004834:299-318 | None:intergenic | 65.0% | |
| CGTGGTTCAGGTGCAGGTGC+GGG | + | tig0004834:303-322 | None:intergenic | 65.0% | |
| GCGTGGTTCAGGTGCAGGTG+CGG | + | tig0004834:304-323 | None:intergenic | 65.0% | |
| GTAGGGCGTGGTTCAGGTGC+AGG | + | tig0004834:309-328 | None:intergenic | 65.0% | |
| ACCATGGACGAACCGGGGGT+GGG | + | tig0004834:212-231 | None:intergenic | 65.0% | |
| AACCATGGACGAACCGGGGG+TGG | + | tig0004834:213-232 | None:intergenic | 65.0% | |
| CGGAACCATGGACGAACCGG+GGG | + | tig0004834:216-235 | None:intergenic | 65.0% | |
| GCGGAACCATGGACGAACCG+GGG | + | tig0004834:217-236 | None:intergenic | 65.0% | |
| TGTGGGTGTGGGTGCAGGTG+CGG | + | tig0004834:256-275 | None:intergenic | 65.0% | |
| !! | GCAGGTGCTGGTGTGGGTGT+GGG | + | tig0004834:267-286 | None:intergenic | 65.0% |
| !! | TGCAGGTGCTGGTGTGGGTG+TGG | + | tig0004834:268-287 | None:intergenic | 65.0% |
| !! | GCAGGTGCAGGTGCTGGTGT+GGG | + | tig0004834:273-292 | None:intergenic | 65.0% |
| !! | TGCAGGTGCAGGTGCTGGTG+TGG | + | tig0004834:274-293 | None:intergenic | 65.0% |
| TTCAGGTGCAGGTGCGGGTG+GGG | + | tig0004834:298-317 | None:intergenic | 65.0% | |
| GTTCAGGTGCAGGTGCGGGT+GGG | + | tig0004834:299-318 | None:intergenic | 65.0% | |
| CGTGGTTCAGGTGCAGGTGC+GGG | + | tig0004834:303-322 | None:intergenic | 65.0% | |
| GCGTGGTTCAGGTGCAGGTG+CGG | + | tig0004834:304-323 | None:intergenic | 65.0% | |
| GTAGGGCGTGGTTCAGGTGC+AGG | + | tig0004834:309-328 | None:intergenic | 65.0% | |
| ! | ACCCACCCCCGGTTCGTCCA+TGG | - | tig0004834:208-227 | Msa1341700:CDS | 70.0% |
| TGCAGGTGCGGGGCGAATGG+AGG | + | tig0004834:244-263 | None:intergenic | 70.0% | |
| TGGGTGTGGGTGCAGGTGCG+GGG | + | tig0004834:254-273 | None:intergenic | 70.0% | |
| GTGGGTGTGGGTGCAGGTGC+GGG | + | tig0004834:255-274 | None:intergenic | 70.0% | |
| GCTGGTGTGGGTGTGGGTGC+AGG | + | tig0004834:261-280 | None:intergenic | 70.0% | |
| TCAGGTGCAGGTGCGGGTGG+GGG | + | tig0004834:297-316 | None:intergenic | 70.0% | |
| GGTTCAGGTGCAGGTGCGGG+TGG | + | tig0004834:300-319 | None:intergenic | 70.0% | |
| ! | ACCCACCCCCGGTTCGTCCA+TGG | - | tig0004834:208-227 | Msa1341700:CDS | 70.0% |
| TGCAGGTGCGGGGCGAATGG+AGG | + | tig0004834:244-263 | None:intergenic | 70.0% | |
| TGGGTGTGGGTGCAGGTGCG+GGG | + | tig0004834:254-273 | None:intergenic | 70.0% | |
| GTGGGTGTGGGTGCAGGTGC+GGG | + | tig0004834:255-274 | None:intergenic | 70.0% | |
| GCTGGTGTGGGTGTGGGTGC+AGG | + | tig0004834:261-280 | None:intergenic | 70.0% | |
| TCAGGTGCAGGTGCGGGTGG+GGG | + | tig0004834:297-316 | None:intergenic | 70.0% | |
| GGTTCAGGTGCAGGTGCGGG+TGG | + | tig0004834:300-319 | None:intergenic | 70.0% | |
| GGGTGCAGGTGCGGGGCGAA+TGG | + | tig0004834:247-266 | None:intergenic | 75.0% | |
| ! | GGGGGTGCAGGTGCAGGTGC+TGG | + | tig0004834:279-298 | None:intergenic | 75.0% |
| GGGTGCAGGTGCGGGGCGAA+TGG | + | tig0004834:247-266 | None:intergenic | 75.0% | |
| ! | GGGGGTGCAGGTGCAGGTGC+TGG | + | tig0004834:279-298 | None:intergenic | 75.0% |
| !! | GCGGGTGGGGGTGCAGGTGC+AGG | + | tig0004834:285-304 | None:intergenic | 80.0% |
| !! | GCAGGTGCGGGTGGGGGTGC+AGG | + | tig0004834:291-310 | None:intergenic | 80.0% |
| !! | GCGGGTGGGGGTGCAGGTGC+AGG | + | tig0004834:285-304 | None:intergenic | 80.0% |
| !! | GCAGGTGCGGGTGGGGGTGC+AGG | + | tig0004834:291-310 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004834 | gene | 201 | 1307 | 201 | ID=Msa1341700;Name=Msa1341700 |
| tig0004834 | mRNA | 201 | 1307 | 201 | ID=Msa1341700-mRNA-1;Parent=Msa1341700;Name=Msa1341700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|368 |
| tig0004834 | exon | 201 | 1307 | 201 | ID=Msa1341700-mRNA-1:exon:3293;Parent=Msa1341700-mRNA-1 |
| tig0004834 | CDS | 201 | 1307 | 201 | ID=Msa1341700-mRNA-1:cds;Parent=Msa1341700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
