Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343910 | XP_013445314.1 | 94.932 | 296 | 10 | 1 | 1 | 291 | 1 | 296 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343910 | sp|Q9QWZ1|RAD1_MOUSE | 25.413 | 303 | 180 | 12 | 1 | 288 | 4 | 275 | 6.83e-20 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343910 | A0A072U0N1 | 94.932 | 296 | 10 | 1 | 1 | 291 | 1 | 296 | 0.0 | 585 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1205130 | Msa1343910 | 0.815788 | 7.726347e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343910 | MtrunA17_Chr8g0356441 | 94.932 | 296 | 10 | 1 | 1 | 291 | 1 | 296 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1343910 | AT4G17760.1 | 67.918 | 293 | 88 | 2 | 4 | 291 | 9 | 300 | 5.59e-155 | 435 |
| Msa1343910 | AT4G17760.2 | 65.591 | 186 | 58 | 2 | 111 | 291 | 1 | 185 | 8.54e-88 | 260 |
Find 90 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATACCATTCTTCTCAGTTT+TGG | 0.234742 | tig0006730:+12644 | None:intergenic |
| GTTATTATTAGGTAGAATTA+AGG | 0.239418 | tig0006730:-12708 | Msa1343910:three_prime_UTR |
| GTACATACTCAGGATGAAAT+TGG | 0.247406 | tig0006730:-12565 | Msa1343910:three_prime_UTR |
| CCCTTTGACCTTTACTGTTC+AGG | 0.268886 | tig0006730:-14131 | Msa1343910:intron |
| TGAGAGGTAGGTTTGGAAAT+TGG | 0.274187 | tig0006730:+12826 | None:intergenic |
| TTAAATGAATTGTTATTATT+AGG | 0.290332 | tig0006730:-12719 | Msa1343910:exon |
| TAGTTCCATGCAACAGTATC+AGG | 0.313377 | tig0006730:+14178 | None:intergenic |
| TGCAATGACACTTAATTATC+TGG | 0.329000 | tig0006730:+12510 | None:intergenic |
| GCTATGTAAGGAAAATTATA+AGG | 0.352972 | tig0006730:+12675 | None:intergenic |
| TCTGATCTCTGCACAAATAC+TGG | 0.365082 | tig0006730:+14210 | None:intergenic |
| AGTGTCATTGCACGGGAAAT+AGG | 0.367111 | tig0006730:-12499 | Msa1343910:three_prime_UTR |
| TTGAGGAGAAGCTGCATATC+AGG | 0.368769 | tig0006730:+16520 | None:intergenic |
| GATCTGGCTCCATAGTTATC+TGG | 0.370914 | tig0006730:+13279 | None:intergenic |
| TTGGTTTGAAAAGCTATGTA+AGG | 0.397877 | tig0006730:+12663 | None:intergenic |
| CATAATCTACTTTATGTCAA+TGG | 0.405906 | tig0006730:+12435 | None:intergenic |
| GCAGAAGTACGACCTCGTTT+TGG | 0.412550 | tig0006730:-16628 | Msa1343910:CDS |
| TCCAGTTCGCATAGAACGTC+TGG | 0.414965 | tig0006730:+16923 | None:intergenic |
| GATTAAAACGATGCCGTGTT+CGG | 0.419468 | tig0006730:+16826 | None:intergenic |
| ATCAAGCATCCAGATAACTA+TGG | 0.424375 | tig0006730:-13288 | Msa1343910:CDS |
| CGTCCATTTCTGACATGGTC+GGG | 0.438244 | tig0006730:+16954 | None:intergenic |
| ATTTAATCTTCACTTTCCTC+AGG | 0.442353 | tig0006730:+12736 | None:intergenic |
| TTTCCACCGAACGGCGGTTA+AGG | 0.448714 | tig0006730:+16877 | None:intergenic |
| CATCCCGACCATGTCAGAAA+TGG | 0.450961 | tig0006730:-16957 | Msa1343910:exon |
| GTTATTCAGATTCAGTATCC+TGG | 0.465773 | tig0006730:-16544 | Msa1343910:CDS |
| TTCTTCGTCCATTTCTGACA+TGG | 0.475461 | tig0006730:+16949 | None:intergenic |
| TACATACTCAGGATGAAATT+GGG | 0.477291 | tig0006730:-12564 | Msa1343910:three_prime_UTR |
| AACGTAACAGAAGGAGGATC+TGG | 0.478269 | tig0006730:+13263 | None:intergenic |
| TCGTCCATTTCTGACATGGT+CGG | 0.479813 | tig0006730:+16953 | None:intergenic |
| CTTCAGATCTGTAGATTCGC+TGG | 0.480426 | tig0006730:-14236 | Msa1343910:intron |
| AGATCAAGCAAGTTAAGCAT+TGG | 0.483178 | tig0006730:-12883 | Msa1343910:CDS |
| ATAAGGGTGAGAGGTAGGTT+TGG | 0.483989 | tig0006730:+12819 | None:intergenic |
| CACCCTTATGTCGATTCTGC+CGG | 0.484742 | tig0006730:-12805 | Msa1343910:CDS |
| CAAACCAAAACTGAGAAGAA+TGG | 0.487296 | tig0006730:-12648 | Msa1343910:three_prime_UTR |
| ATAAATCTAACACGGCGTCT+TGG | 0.488952 | tig0006730:+16849 | None:intergenic |
| TCGACGCCTTAACCGCCGTT+CGG | 0.489651 | tig0006730:-16883 | Msa1343910:CDS |
| GATCAAGCAAGTTAAGCATT+GGG | 0.491010 | tig0006730:-12882 | Msa1343910:CDS |
| AATCTAACACGGCGTCTTGG+TGG | 0.496798 | tig0006730:+16852 | None:intergenic |
| AATGTTAAAAGTGCAGCATC+TGG | 0.503568 | tig0006730:-12851 | Msa1343910:CDS |
| CCTGAACAGTAAAGGTCAAA+GGG | 0.505595 | tig0006730:+14131 | None:intergenic |
| CTGAAATGCTACCAAGAGTT+CGG | 0.505766 | tig0006730:+13092 | None:intergenic |
| ATTGAGGATCTTGAATGGCC+TGG | 0.506692 | tig0006730:-13311 | Msa1343910:CDS |
| TGAAGGACATGGGGACCTGC+AGG | 0.506864 | tig0006730:-13234 | Msa1343910:intron |
| TAGCCGGCAGAATCGACATA+AGG | 0.508799 | tig0006730:+12802 | None:intergenic |
| ACCAGACGTTCTATGCGAAC+TGG | 0.510099 | tig0006730:-16924 | Msa1343910:CDS |
| TCGACCAGGTTGTTGATAGC+CGG | 0.513509 | tig0006730:+12786 | None:intergenic |
| AACTAATGAATTAACATGCA+TGG | 0.513552 | tig0006730:+12368 | None:intergenic |
| GTTATCTGGATGCTTGATCC+AGG | 0.519897 | tig0006730:+13293 | None:intergenic |
| ATGGCATACCTGAACAGTAA+AGG | 0.520495 | tig0006730:+14123 | None:intergenic |
| AGCATTTCAGTGTGATCACC+AGG | 0.521196 | tig0006730:-13079 | Msa1343910:CDS |
| AGCCGGCAGAATCGACATAA+GGG | 0.521551 | tig0006730:+12803 | None:intergenic |
| AAGTGGTTGTCTTCAAGCAA+AGG | 0.524384 | tig0006730:-16795 | Msa1343910:CDS |
| GATAATTAAGTGTCATTGCA+CGG | 0.526146 | tig0006730:-12507 | Msa1343910:three_prime_UTR |
| AGCACTAAAGGAAGCTATTG+AGG | 0.528126 | tig0006730:-13327 | Msa1343910:intron |
| ACCTGAACAGTAAAGGTCAA+AGG | 0.531404 | tig0006730:+14130 | None:intergenic |
| ACGTTGAGAGCTGAAGGACA+TGG | 0.533667 | tig0006730:-13245 | Msa1343910:CDS |
| ATTAATACTTGAAAGAAGCC+TGG | 0.537210 | tig0006730:+13061 | None:intergenic |
| GTCAAAGGGTTAGTCCCAGC+AGG | 0.538849 | tig0006730:+14145 | None:intergenic |
| AAAGGTTTATCTCAAGAAAG+AGG | 0.542300 | tig0006730:-16777 | Msa1343910:intron |
| TTGGTGGCGTTTCCACCGAA+CGG | 0.550346 | tig0006730:+16868 | None:intergenic |
| TTGTGCGAATTCCGAACTCT+TGG | 0.553644 | tig0006730:-13103 | Msa1343910:CDS |
| TGGCAAACACACGAGGCGTA+TGG | 0.556668 | tig0006730:+12530 | None:intergenic |
| ATAATTAAGTGTCATTGCAC+GGG | 0.562610 | tig0006730:-12506 | Msa1343910:three_prime_UTR |
| TGCGAACTGGAAAACGTACA+AGG | 0.564049 | tig0006730:-16911 | Msa1343910:CDS |
| TCTGTTACGTTGAGAGCTGA+AGG | 0.566842 | tig0006730:-13251 | Msa1343910:CDS |
| ACGCCTTAACCGCCGTTCGG+TGG | 0.566892 | tig0006730:-16880 | Msa1343910:CDS |
| AAGTTAAGCATTGGGAGAAG+TGG | 0.580030 | tig0006730:-12874 | Msa1343910:CDS |
| AAGCTATTGAGGATCTTGAA+TGG | 0.582081 | tig0006730:-13316 | Msa1343910:CDS |
| CGTTGAGAGCTGAAGGACAT+GGG | 0.582550 | tig0006730:-13244 | Msa1343910:CDS |
| TCGACATAAGGGTGAGAGGT+AGG | 0.585971 | tig0006730:+12814 | None:intergenic |
| TGAATTCTTTGTGAAACCTG+AGG | 0.592342 | tig0006730:-12752 | Msa1343910:CDS |
| TCAATATGAGCTATTCGACC+AGG | 0.602194 | tig0006730:+12772 | None:intergenic |
| AGAAGCTGCATATCAGGACC+AGG | 0.605824 | tig0006730:+16526 | None:intergenic |
| ATAAGACAAAGTACATACTC+AGG | 0.607730 | tig0006730:-12575 | Msa1343910:three_prime_UTR |
| AGATTGTAGAGAACGAACAG+AGG | 0.617949 | tig0006730:-16984 | Msa1343910:five_prime_UTR |
| GCTCTCAACGTAACAGAAGG+AGG | 0.621366 | tig0006730:+13257 | None:intergenic |
| TCAGCTCTCAACGTAACAGA+AGG | 0.623988 | tig0006730:+13254 | None:intergenic |
| GGATTCCTGATACTGTTGCA+TGG | 0.638156 | tig0006730:-14183 | Msa1343910:CDS |
| AGAATCGACATAAGGGTGAG+AGG | 0.646036 | tig0006730:+12810 | None:intergenic |
| GATTGTAGAGAACGAACAGA+GGG | 0.654285 | tig0006730:-16983 | Msa1343910:five_prime_UTR |
| TATTAGAAGTTGATGCTCTG+AGG | 0.660938 | tig0006730:+12932 | None:intergenic |
| GTGTTAGATTTATCCGAACA+CGG | 0.663124 | tig0006730:-16839 | Msa1343910:CDS |
| AATTATCTGGCAAACACACG+AGG | 0.667542 | tig0006730:+12523 | None:intergenic |
| TCTACTTTATGTCAATGGAG+TGG | 0.668416 | tig0006730:+12440 | None:intergenic |
| TGAATAACACCAGAATGACC+CGG | 0.677975 | tig0006730:+16559 | None:intergenic |
| CCTAAACTCACACCAAAACG+AGG | 0.678815 | tig0006730:+16616 | None:intergenic |
| TCTGCCGGCTATCAACAACC+TGG | 0.681187 | tig0006730:-12790 | Msa1343910:CDS |
| GTTGAGAGCTGAAGGACATG+GGG | 0.701488 | tig0006730:-13243 | Msa1343910:CDS |
| TTTGTGCAGAGATCAGAACA+AGG | 0.733824 | tig0006730:-14204 | Msa1343910:CDS |
| GTGTTCGGATAAATCTAACA+CGG | 0.735870 | tig0006730:+16841 | None:intergenic |
| TTAAATGATGTATTTCACTG+TGG | 0.782563 | tig0006730:-12468 | Msa1343910:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATGAATTGTTATTATT+AGG | - | tig0006730:16681-16700 | Msa1343910:intron | 10.0% |
| !! | AATAAAATTGAAGAAGATAT+TGG | + | tig0006730:12661-12680 | None:intergenic | 15.0% |
| !!! | TATATTTTGTGTATTTGAAT+GGG | + | tig0006730:12944-12963 | None:intergenic | 15.0% |
| !!! | TATAACTTTTACTAAAATCA+CGG | + | tig0006730:13033-13052 | None:intergenic | 15.0% |
| !! | TAATCTTCTACTATATTAAA+AGG | - | tig0006730:13179-13198 | Msa1343910:intron | 15.0% |
| !! | ACCAAAATGAAATAAAATAT+TGG | - | tig0006730:13907-13926 | Msa1343910:intron | 15.0% |
| !! | ATAAAACAAATATGATATAG+AGG | + | tig0006730:14222-14241 | None:intergenic | 15.0% |
| !! | ATAAAGAAATTTAAATTCTG+TGG | + | tig0006730:14997-15016 | Msa1343920:intron | 15.0% |
| !! | TGAACATCTATAAATTTATA+AGG | - | tig0006730:15960-15979 | Msa1343910:intron | 15.0% |
| !! | AAGAAGATATTGGTATTATT+TGG | + | tig0006730:12651-12670 | None:intergenic | 20.0% |
| !! | AAAGAAAGAAAAATGAGAAT+TGG | + | tig0006730:12684-12703 | None:intergenic | 20.0% |
| !!! | ATATTTTGTGTATTTGAATG+GGG | + | tig0006730:12943-12962 | None:intergenic | 20.0% |
| !!! | CTATATTTTGTGTATTTGAA+TGG | + | tig0006730:12945-12964 | None:intergenic | 20.0% |
| !! | TTCTACTATATTAAAAGGTA+AGG | - | tig0006730:13184-13203 | Msa1343910:intron | 20.0% |
| !!! | TAAATTTTGTGAGATTGTTT+GGG | + | tig0006730:13328-13347 | None:intergenic | 20.0% |
| !!! | ATAAATTTTGTGAGATTGTT+TGG | + | tig0006730:13329-13348 | None:intergenic | 20.0% |
| !! | AATTAAGTATAAAGTAGTTC+CGG | - | tig0006730:13507-13526 | Msa1343910:intron | 20.0% |
| !! | ACTGTTAGATTAAAATTGTA+AGG | + | tig0006730:13682-13701 | None:intergenic | 20.0% |
| !!! | GCCAATATTTTATTTCATTT+TGG | + | tig0006730:13911-13930 | None:intergenic | 20.0% |
| !! | AATGAAATAAAATATTGGCA+AGG | - | tig0006730:13912-13931 | Msa1343910:intron | 20.0% |
| !!! | GTATATTGTTTTTACTCTTT+GGG | + | tig0006730:14294-14313 | None:intergenic | 20.0% |
| !!! | AGTATATTGTTTTTACTCTT+TGG | + | tig0006730:14295-14314 | None:intergenic | 20.0% |
| !!! | AGCTATAAAAGACAATTTTA+TGG | + | tig0006730:14508-14527 | None:intergenic | 20.0% |
| !!! | CTTTATCAAGTAAGAATTTT+TGG | - | tig0006730:15011-15030 | Msa1343910:intron | 20.0% |
| !!! | TAAATCCAAAATTTTGTAGA+AGG | + | tig0006730:15401-15420 | Msa1343920:CDS | 20.0% |
| !!! | TAAACAACTTTTCATATAAG+TGG | - | tig0006730:15883-15902 | Msa1343910:intron | 20.0% |
| !!! | AACCATAGAATCATTTTAAT+TGG | - | tig0006730:16001-16020 | Msa1343910:intron | 20.0% |
| !!! | ACCATAGAATCATTTTAATT+GGG | - | tig0006730:16002-16021 | Msa1343910:intron | 20.0% |
| !! | AATATAATGAATTCAAAGTG+CGG | + | tig0006730:16240-16259 | None:intergenic | 20.0% |
| !! | GTTATTATTAGGTAGAATTA+AGG | - | tig0006730:16692-16711 | Msa1343910:intron | 20.0% |
| !!! | ACATTTTGATATTACATGTC+AGG | - | tig0006730:12970-12989 | Msa1343910:intron | 25.0% |
| !!! | CATTTTGATATTACATGTCA+GGG | - | tig0006730:12971-12990 | Msa1343910:intron | 25.0% |
| ! | CAAAATTATAGCGATGATTT+AGG | - | tig0006730:13067-13086 | Msa1343910:intron | 25.0% |
| ! | ATAAGCTGTTTATTCAAACA+GGG | + | tig0006730:13130-13149 | None:intergenic | 25.0% |
| ! | AATAAGCTGTTTATTCAAAC+AGG | + | tig0006730:13131-13150 | None:intergenic | 25.0% |
| !!! | AGCTATTTCAAAAGCTATTT+TGG | - | tig0006730:13237-13256 | Msa1343910:CDS | 25.0% |
| ! | TGAAAATAGCTTATGAACAA+TGG | - | tig0006730:13279-13298 | Msa1343910:CDS | 25.0% |
| ! | CTTAATTTATAGTGAGTGTT+TGG | + | tig0006730:13494-13513 | None:intergenic | 25.0% |
| ! | ATATAGATCCTTATTGGAAA+TGG | + | tig0006730:13832-13851 | None:intergenic | 25.0% |
| ! | TTCAACATATAGATCCTTAT+TGG | + | tig0006730:13838-13857 | None:intergenic | 25.0% |
| ! | AAGGATCTATATGTTGAATT+AGG | - | tig0006730:13840-13859 | Msa1343910:intron | 25.0% |
| !!! | ATGATTTGCTTTATTATCTG+AGG | - | tig0006730:14243-14262 | Msa1343910:intron | 25.0% |
| ! | CTATCAGTATTGTCAAATAT+TGG | + | tig0006730:14623-14642 | None:intergenic | 25.0% |
| ! | GAAAACTAATTAGATGTAGA+AGG | + | tig0006730:14860-14879 | Msa1343920:CDS | 25.0% |
| ! | GAAATCCAATTAGAATTTGT+CGG | - | tig0006730:14930-14949 | Msa1343910:intron | 25.0% |
| ! | CCAATAAATGACCATTAATT+TGG | + | tig0006730:15067-15086 | Msa1343920:intron | 25.0% |
| ! | CCAAATTAATGGTCATTTAT+TGG | - | tig0006730:15064-15083 | Msa1343910:intron | 25.0% |
| ! | TTAATGTGATAGTTCAATGA+TGG | - | tig0006730:15418-15437 | Msa1343910:intron | 25.0% |
| ! | TCATTCAACCATTATATTAC+TGG | - | tig0006730:15487-15506 | Msa1343910:intron | 25.0% |
| ! | ACTAGTAACCAGTAATATAA+TGG | + | tig0006730:15498-15517 | Msa1343920:CDS | 25.0% |
| ! | TCCCAATTAAAATGATTCTA+TGG | + | tig0006730:16006-16025 | None:intergenic | 25.0% |
| !!! | TTTTCTTTGATAACACTACT+AGG | + | tig0006730:16496-16515 | None:intergenic | 25.0% |
| ! | GCTATGTAAGGAAAATTATA+AGG | + | tig0006730:16728-16747 | None:intergenic | 25.0% |
| ! | TTAAATGATGTATTTCACTG+TGG | - | tig0006730:16932-16951 | Msa1343910:CDS | 25.0% |
| ! | CATAATCTACTTTATGTCAA+TGG | + | tig0006730:16968-16987 | None:intergenic | 25.0% |
| ! | AACTAATGAATTAACATGCA+TGG | + | tig0006730:17035-17054 | None:intergenic | 25.0% |
| !! | GTTTTAATCGTTGAAGAAAG+TGG | - | tig0006730:12588-12607 | Msa1343910:three_prime_UTR | 30.0% |
| AAAGGTTTATCTCAAGAAAG+AGG | - | tig0006730:12623-12642 | Msa1343910:three_prime_UTR | 30.0% | |
| !! | TGATTGTTTGAACGCTTTTT+CGG | - | tig0006730:12816-12835 | Msa1343910:CDS | 30.0% |
| TAAGTCCATATATGGAATGA+CGG | + | tig0006730:13105-13124 | None:intergenic | 30.0% | |
| GCTTATTTGAGCTTATCTAT+TGG | + | tig0006730:13353-13372 | None:intergenic | 30.0% | |
| CACAGTTCCAAATATACTAA+GGG | + | tig0006730:13389-13408 | None:intergenic | 30.0% | |
| TGAACTGTCTGATTAAGTTT+AGG | - | tig0006730:13632-13651 | Msa1343910:intron | 30.0% | |
| TTGCCTATAGTAGATTGAAA+TGG | + | tig0006730:14054-14073 | None:intergenic | 30.0% | |
| !! | TTTACTCTTTGGGTTGATAT+AGG | + | tig0006730:14284-14303 | None:intergenic | 30.0% |
| CAGGCAAAACATTAATAGAA+GGG | + | tig0006730:14386-14405 | None:intergenic | 30.0% | |
| TAATGTACGAGAAGTTAGAA+AGG | + | tig0006730:14414-14433 | None:intergenic | 30.0% | |
| TTTCTAACTTCTCGTACATT+AGG | - | tig0006730:14413-14432 | Msa1343910:intron | 30.0% | |
| CACTGCTTACTATATAAGAA+TGG | + | tig0006730:14469-14488 | None:intergenic | 30.0% | |
| TATAGTAAGCAGTGTATTGA+TGG | - | tig0006730:14475-14494 | Msa1343910:intron | 30.0% | |
| !!! | TTTTTTCAACTACTCATGTG+TGG | + | tig0006730:14686-14705 | None:intergenic | 30.0% |
| CTTCATAGATAGGTATTTAG+AGG | + | tig0006730:14734-14753 | None:intergenic | 30.0% | |
| TTTCTTGATACTCGATATCA+GGG | + | tig0006730:14761-14780 | None:intergenic | 30.0% | |
| ATTTCTTGATACTCGATATC+AGG | + | tig0006730:14762-14781 | None:intergenic | 30.0% | |
| GAATTTGTGACTGTCATAAA+TGG | + | tig0006730:14790-14809 | None:intergenic | 30.0% | |
| AAGTTCCGACAAATTCTAAT+TGG | + | tig0006730:14938-14957 | Msa1343920:intron | 30.0% | |
| AGATGTAATTCCTTTCAGAA+TGG | - | tig0006730:15038-15057 | Msa1343910:intron | 30.0% | |
| AATAATGACCTAGTATCCTT+TGG | - | tig0006730:15324-15343 | Msa1343910:intron | 30.0% | |
| ! | GATAGTTCAATGATGGAAAT+TGG | - | tig0006730:15425-15444 | Msa1343910:intron | 30.0% |
| GAAAAACCATTGCTTGTATA+CGG | - | tig0006730:15749-15768 | Msa1343910:intron | 30.0% | |
| ! | ATTTGAAATTTGAGCCAAAC+TGG | - | tig0006730:16039-16058 | Msa1343910:intron | 30.0% |
| ATTAATACTTGAAAGAAGCC+TGG | + | tig0006730:16342-16361 | None:intergenic | 30.0% | |
| !!! | ATCTGTCATTTTGTTGCTTA+TGG | - | tig0006730:16421-16440 | Msa1343910:intron | 30.0% |
| ! | TTGTTGCTTATGGTTATAAC+AGG | - | tig0006730:16431-16450 | Msa1343910:intron | 30.0% |
| ATTTAATCTTCACTTTCCTC+AGG | + | tig0006730:16667-16686 | None:intergenic | 30.0% | |
| ! | TTGGTTTGAAAAGCTATGTA+AGG | + | tig0006730:16740-16759 | None:intergenic | 30.0% |
| ! | TATACCATTCTTCTCAGTTT+TGG | + | tig0006730:16759-16778 | None:intergenic | 30.0% |
| ATAAGACAAAGTACATACTC+AGG | - | tig0006730:16825-16844 | Msa1343910:CDS | 30.0% | |
| TACATACTCAGGATGAAATT+GGG | - | tig0006730:16836-16855 | Msa1343910:CDS | 30.0% | |
| TGCAATGACACTTAATTATC+TGG | + | tig0006730:16893-16912 | None:intergenic | 30.0% | |
| ! | GATAATTAAGTGTCATTGCA+CGG | - | tig0006730:16893-16912 | Msa1343910:CDS | 30.0% |
| ! | ATAATTAAGTGTCATTGCAC+GGG | - | tig0006730:16894-16913 | Msa1343910:CDS | 30.0% |
| GTGTTCGGATAAATCTAACA+CGG | + | tig0006730:12562-12581 | None:intergenic | 35.0% | |
| GTGTTAGATTTATCCGAACA+CGG | - | tig0006730:12561-12580 | Msa1343910:three_prime_UTR | 35.0% | |
| GTTATTCAGATTCAGTATCC+TGG | - | tig0006730:12856-12875 | Msa1343910:CDS | 35.0% | |
| TGACAGTTAGAACATACTTG+AGG | + | tig0006730:12900-12919 | None:intergenic | 35.0% | |
| TTACTAAAATCACGGTGACA+CGG | + | tig0006730:13025-13044 | None:intergenic | 35.0% | |
| AATCACCGTCATTCCATATA+TGG | - | tig0006730:13097-13116 | Msa1343910:CDS | 35.0% | |
| AACAGCTTATTTGCAGCTTA+TGG | - | tig0006730:13140-13159 | Msa1343910:intron | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | tig0006730:13363-13382 | Msa1343910:intron | 35.0% | |
| AAATATACTAAGGGCCTGTT+TGG | + | tig0006730:13380-13399 | None:intergenic | 35.0% | |
| AAACAGGCCCTTAGTATATT+TGG | - | tig0006730:13379-13398 | Msa1343910:intron | 35.0% | |
| CCACAGTTCCAAATATACTA+AGG | + | tig0006730:13390-13409 | None:intergenic | 35.0% | |
| ! | CCTTAGTATATTTGGAACTG+TGG | - | tig0006730:13387-13406 | Msa1343910:intron | 35.0% |
| ATAGGTAACCAAGCAACTAA+CGG | + | tig0006730:13464-13483 | None:intergenic | 35.0% | |
| ! | AGTTGCTTGGTTACCTATTT+TGG | - | tig0006730:13466-13485 | Msa1343910:intron | 35.0% |
| ! | TGAGTGTTTGGAACCAAAAT+AGG | + | tig0006730:13482-13501 | None:intergenic | 35.0% |
| CAAGTTAGTGTAGCAACTTT+AGG | + | tig0006730:13534-13553 | None:intergenic | 35.0% | |
| ! | GTTTAGGCGATTTGAAATGT+TGG | - | tig0006730:13648-13667 | Msa1343910:intron | 35.0% |
| TGCGTACATGACATTCAATA+TGG | - | tig0006730:13779-13798 | Msa1343910:intron | 35.0% | |
| TGTGCTTTCCATTTCCAATA+AGG | - | tig0006730:13821-13840 | Msa1343910:intron | 35.0% | |
| GTACACATCTTTACACAAGA+TGG | - | tig0006730:13980-13999 | Msa1343910:intron | 35.0% | |
| ! | CTGCCATTTCAATCTACTAT+AGG | - | tig0006730:14048-14067 | Msa1343910:intron | 35.0% |
| ! | GTGTTTATAGGGAAGGTTTT+TGG | - | tig0006730:14120-14139 | Msa1343910:intron | 35.0% |
| CATTAATAGAAGGGTCTACA+AGG | + | tig0006730:14377-14396 | None:intergenic | 35.0% | |
| GCAGGCAAAACATTAATAGA+AGG | + | tig0006730:14387-14406 | None:intergenic | 35.0% | |
| GTATTGTCAAATATTGGCCA+TGG | + | tig0006730:14617-14636 | None:intergenic | 35.0% | |
| ! | AATTTGACTTAAACCGTGAC+AGG | + | tig0006730:14823-14842 | Msa1343920:CDS | 35.0% |
| AATTTGGCTACCATTCTGAA+AGG | + | tig0006730:15051-15070 | Msa1343920:intron | 35.0% | |
| CAGAATGGTAGCCAAATTAA+TGG | - | tig0006730:15053-15072 | Msa1343910:intron | 35.0% | |
| AATCTACAGATCTGAAGATG+TGG | + | tig0006730:15161-15180 | Msa1343920:intron | 35.0% | |
| ! | AACTACAATTTTGAACCTGC+TGG | - | tig0006730:15240-15259 | Msa1343910:intron | 35.0% |
| ! | ACTACAATTTTGAACCTGCT+GGG | - | tig0006730:15241-15260 | Msa1343910:intron | 35.0% |
| ! | AGGGTCCTTCTACAAAATTT+TGG | - | tig0006730:15393-15412 | Msa1343910:intron | 35.0% |
| GTGCTGTGCAGTAAAAAATT+TGG | - | tig0006730:15587-15606 | Msa1343910:intron | 35.0% | |
| CTGTGCAGTAAAAAATTTGG+AGG | - | tig0006730:15590-15609 | Msa1343910:intron | 35.0% | |
| AGTTAACCGTATACAAGCAA+TGG | + | tig0006730:15758-15777 | None:intergenic | 35.0% | |
| AATTACACCTAGAGCTAGTT+TGG | - | tig0006730:15794-15813 | Msa1343910:intron | 35.0% | |
| ! | AGTTTATCCAAACTAGCTCT+AGG | + | tig0006730:15804-15823 | None:intergenic | 35.0% |
| AAGCTATTGAGGATCTTGAA+TGG | - | tig0006730:16084-16103 | Msa1343910:intron | 35.0% | |
| ATCAAGCATCCAGATAACTA+TGG | - | tig0006730:16112-16131 | Msa1343910:intron | 35.0% | |
| TGTATTGCTTTCGACTCAAA+TGG | - | tig0006730:16191-16210 | Msa1343910:intron | 35.0% | |
| GTATTGCTTTCGACTCAAAT+GGG | - | tig0006730:16192-16211 | Msa1343910:intron | 35.0% | |
| ATAAGTCGATGTCTGGTAAA+TGG | + | tig0006730:16403-16422 | None:intergenic | 35.0% | |
| !! | TATTAGAAGTTGATGCTCTG+AGG | + | tig0006730:16471-16490 | None:intergenic | 35.0% |
| AGATCAAGCAAGTTAAGCAT+TGG | - | tig0006730:16517-16536 | Msa1343910:intron | 35.0% | |
| GATCAAGCAAGTTAAGCATT+GGG | - | tig0006730:16518-16537 | Msa1343910:intron | 35.0% | |
| ! | AATGTTAAAAGTGCAGCATC+TGG | - | tig0006730:16549-16568 | Msa1343910:CDS | 35.0% |
| TGAATTCTTTGTGAAACCTG+AGG | - | tig0006730:16648-16667 | Msa1343910:CDS | 35.0% | |
| CAAACCAAAACTGAGAAGAA+TGG | - | tig0006730:16752-16771 | Msa1343910:intron | 35.0% | |
| GTACATACTCAGGATGAAAT+TGG | - | tig0006730:16835-16854 | Msa1343910:CDS | 35.0% | |
| TCTACTTTATGTCAATGGAG+TGG | + | tig0006730:16963-16982 | None:intergenic | 35.0% | |
| AGATTGTAGAGAACGAACAG+AGG | - | tig0006730:12416-12435 | Msa1343910:intron | 40.0% | |
| GATTGTAGAGAACGAACAGA+GGG | - | tig0006730:12417-12436 | Msa1343910:intron | 40.0% | |
| TTCTTCGTCCATTTCTGACA+TGG | + | tig0006730:12454-12473 | None:intergenic | 40.0% | |
| ATAAATCTAACACGGCGTCT+TGG | + | tig0006730:12554-12573 | None:intergenic | 40.0% | |
| GATTAAAACGATGCCGTGTT+CGG | + | tig0006730:12577-12596 | None:intergenic | 40.0% | |
| AAGTGGTTGTCTTCAAGCAA+AGG | - | tig0006730:12605-12624 | Msa1343910:three_prime_UTR | 40.0% | |
| !! | CTCGTTTTGGTGTGAGTTTA+GGG | - | tig0006730:12785-12804 | Msa1343910:CDS | 40.0% |
| !!! | TTTGAACGCTTTTTCGGTTC+CGG | - | tig0006730:12822-12841 | Msa1343910:CDS | 40.0% |
| TGAATAACACCAGAATGACC+CGG | + | tig0006730:12844-12863 | None:intergenic | 40.0% | |
| TACTAAAATCACGGTGACAC+GGG | + | tig0006730:13024-13043 | None:intergenic | 40.0% | |
| ACAGGGCTTAAGTCCATATA+TGG | + | tig0006730:13113-13132 | None:intergenic | 40.0% | |
| !! | TAGTGTAGCAACTTTAGGAC+CGG | + | tig0006730:13529-13548 | None:intergenic | 40.0% |
| TGAGTGATTGCGTGAATGTA+GGG | - | tig0006730:13707-13726 | Msa1343910:intron | 40.0% | |
| TGTCATGTACGCAACTTGTA+TGG | + | tig0006730:13772-13791 | None:intergenic | 40.0% | |
| TTAGGTAGTTGAGACTTGAC+AGG | - | tig0006730:13858-13877 | Msa1343910:intron | 40.0% | |
| TAGTTGAGACTTGACAGGTT+TGG | - | tig0006730:13863-13882 | Msa1343910:intron | 40.0% | |
| AATCCCCATGAATTTGTAGC+TGG | - | tig0006730:13938-13957 | Msa1343910:intron | 40.0% | |
| CATCCAGCTACAAATTCATG+GGG | + | tig0006730:13944-13963 | None:intergenic | 40.0% | |
| GCATCCAGCTACAAATTCAT+GGG | + | tig0006730:13945-13964 | None:intergenic | 40.0% | |
| TGCATCCAGCTACAAATTCA+TGG | + | tig0006730:13946-13965 | None:intergenic | 40.0% | |
| TTGTGATGAGACATCCATCA+TGG | - | tig0006730:14075-14094 | Msa1343910:intron | 40.0% | |
| GCTGTAATGGCGTGTTTATA+GGG | - | tig0006730:14109-14128 | Msa1343910:intron | 40.0% | |
| TAATGGCGTGTTTATAGGGA+AGG | - | tig0006730:14113-14132 | Msa1343910:intron | 40.0% | |
| !! | AGGAGCTTTGGGACTAAATT+TGG | + | tig0006730:14357-14376 | None:intergenic | 40.0% |
| ! | AGAAGTTAGAAAGGAAGTGC+AGG | + | tig0006730:14405-14424 | None:intergenic | 40.0% |
| ! | AGTAAGCAGTGTATTGATGG+CGG | - | tig0006730:14478-14497 | Msa1343910:intron | 40.0% |
| ACATCTGCCATAAAACGTCA+GGG | - | tig0006730:14531-14550 | Msa1343910:intron | 40.0% | |
| CACCACCATCCATTACAAAT+TGG | - | tig0006730:14554-14573 | Msa1343910:intron | 40.0% | |
| ! | CATGGCCAATTTGTAATGGA+TGG | + | tig0006730:14562-14581 | None:intergenic | 40.0% |
| CATCCATTACAAATTGGCCA+TGG | - | tig0006730:14560-14579 | Msa1343910:intron | 40.0% | |
| AGATTTCTTGAGAACTGCCA+TGG | + | tig0006730:14580-14599 | None:intergenic | 40.0% | |
| TTGTCAAATATTGGCCATGG+CGG | + | tig0006730:14614-14633 | None:intergenic | 40.0% | |
| TCAGGGTGATCTTCATAGAT+AGG | + | tig0006730:14744-14763 | None:intergenic | 40.0% | |
| TCTGATCTCTGCACAAATAC+TGG | + | tig0006730:15193-15212 | Msa1343920:intron | 40.0% | |
| TTTGTGCAGAGATCAGAACA+AGG | - | tig0006730:15196-15215 | Msa1343910:intron | 40.0% | |
| TAGTTCCATGCAACAGTATC+AGG | + | tig0006730:15225-15244 | Msa1343920:intron | 40.0% | |
| CCTGAACAGTAAAGGTCAAA+GGG | + | tig0006730:15272-15291 | Msa1343920:CDS | 40.0% | |
| ACCTGAACAGTAAAGGTCAA+AGG | + | tig0006730:15273-15292 | Msa1343920:CDS | 40.0% | |
| ATGGCATACCTGAACAGTAA+AGG | + | tig0006730:15280-15299 | Msa1343920:CDS | 40.0% | |
| ! | TGCAACGGTCGAGAATTTTA+TGG | + | tig0006730:15299-15318 | Msa1343920:CDS | 40.0% |
| GGTCATTATTCAAGCTGCAA+CGG | + | tig0006730:15314-15333 | Msa1343920:CDS | 40.0% | |
| AACGACATCCAAAGGATACT+AGG | + | tig0006730:15335-15354 | Msa1343920:CDS | 40.0% | |
| TAGTATCCTTTGGATGTCGT+TGG | - | tig0006730:15334-15353 | Msa1343910:intron | 40.0% | |
| GAAAATCCAACGACATCCAA+AGG | + | tig0006730:15343-15362 | Msa1343920:CDS | 40.0% | |
| ! | AATTTTGTAGAAGGACCCTG+AGG | + | tig0006730:15392-15411 | Msa1343920:CDS | 40.0% |
| AGCACTAAAGGAAGCTATTG+AGG | - | tig0006730:16073-16092 | Msa1343910:intron | 40.0% | |
| !!! | GGGCACATGCTTGATTTTTT+TGG | - | tig0006730:16212-16231 | Msa1343910:intron | 40.0% |
| CTGAAATGCTACCAAGAGTT+CGG | + | tig0006730:16311-16330 | None:intergenic | 40.0% | |
| ATGACAGATAAGTCGATGTC+TGG | + | tig0006730:16410-16429 | None:intergenic | 40.0% | |
| !! | AAGTTAAGCATTGGGAGAAG+TGG | - | tig0006730:16526-16545 | Msa1343910:CDS | 40.0% |
| TGAGAGGTAGGTTTGGAAAT+TGG | + | tig0006730:16577-16596 | None:intergenic | 40.0% | |
| TCAATATGAGCTATTCGACC+AGG | + | tig0006730:16631-16650 | None:intergenic | 40.0% | |
| AATTATCTGGCAAACACACG+AGG | + | tig0006730:16880-16899 | None:intergenic | 40.0% | |
| TCGTCCATTTCTGACATGGT+CGG | + | tig0006730:12450-12469 | None:intergenic | 45.0% | |
| TGCGAACTGGAAAACGTACA+AGG | - | tig0006730:12489-12508 | Msa1343910:three_prime_UTR | 45.0% | |
| CCTAAACTCACACCAAAACG+AGG | + | tig0006730:12787-12806 | None:intergenic | 45.0% | |
| !! | CCTCGTTTTGGTGTGAGTTT+AGG | - | tig0006730:12784-12803 | Msa1343910:CDS | 45.0% |
| !!! | TTGAACGCTTTTTCGGTTCC+GGG | - | tig0006730:12823-12842 | Msa1343910:CDS | 45.0% |
| TTGAGGAGAAGCTGCATATC+AGG | + | tig0006730:12883-12902 | None:intergenic | 45.0% | |
| ATTACATGTCAGGGTGACGT+CGG | - | tig0006730:12980-12999 | Msa1343910:intron | 45.0% | |
| TACTAAGGGCCTGTTTGGAT+TGG | + | tig0006730:13375-13394 | None:intergenic | 45.0% | |
| TGATTTCGTGTCTCGAGACA+GGG | - | tig0006730:13410-13429 | Msa1343910:intron | 45.0% | |
| AGACAGGGGAAACTACAACA+TGG | - | tig0006730:13425-13444 | Msa1343910:intron | 45.0% | |
| CGAACTGGATTCACGATAGT+TGG | - | tig0006730:13578-13597 | Msa1343910:intron | 45.0% | |
| CATTCACGCAATCACTCACT+TGG | + | tig0006730:13705-13724 | None:intergenic | 45.0% | |
| GTGAGTGATTGCGTGAATGT+AGG | - | tig0006730:13706-13725 | Msa1343910:intron | 45.0% | |
| ! | GCAGCGTTATCGATTGCAAA+TGG | - | tig0006730:14010-14029 | Msa1343910:intron | 45.0% |
| ! | GCGTTATCGATTGCAAATGG+CGG | - | tig0006730:14013-14032 | Msa1343910:intron | 45.0% |
| ! | ATCGATTGCAAATGGCGGAA+TGG | - | tig0006730:14018-14037 | Msa1343910:intron | 45.0% |
| TGATGAGACATCCATCATGG+CGG | - | tig0006730:14078-14097 | Msa1343910:intron | 45.0% | |
| GGCTGTAATGGCGTGTTTAT+AGG | - | tig0006730:14108-14127 | Msa1343910:intron | 45.0% | |
| ! | GGATGGTGAAATATGGTGGA+AGG | + | tig0006730:14146-14165 | None:intergenic | 45.0% |
| ACTTGATGCAGTGTTGTCGA+TGG | + | tig0006730:14170-14189 | None:intergenic | 45.0% | |
| AAGGGTCTACAAGGAGCTTT+GGG | + | tig0006730:14368-14387 | None:intergenic | 45.0% | |
| ! | CTGACGTTTTATGGCAGATG+TGG | + | tig0006730:14532-14551 | None:intergenic | 45.0% |
| CACATCTGCCATAAAACGTC+AGG | - | tig0006730:14530-14549 | Msa1343910:intron | 45.0% | |
| !! | GGCCAATTTGTAATGGATGG+TGG | + | tig0006730:14559-14578 | None:intergenic | 45.0% |
| CTGCCATGGCCAATTTGTAA+TGG | + | tig0006730:14566-14585 | None:intergenic | 45.0% | |
| TTCCAACAGATTGCCTGTCA+CGG | - | tig0006730:14807-14826 | Msa1343910:intron | 45.0% | |
| TGTAGAAGGCTAGAAGCTGT+CGG | + | tig0006730:14846-14865 | Msa1343920:CDS | 45.0% | |
| CTACAGATCTGAAGATGTGG+AGG | + | tig0006730:15158-15177 | Msa1343920:intron | 45.0% | |
| CTTCAGATCTGTAGATTCGC+TGG | - | tig0006730:15164-15183 | Msa1343910:intron | 45.0% | |
| GGATTCCTGATACTGTTGCA+TGG | - | tig0006730:15217-15236 | Msa1343910:intron | 45.0% | |
| CCCTTTGACCTTTACTGTTC+AGG | - | tig0006730:15269-15288 | Msa1343910:intron | 45.0% | |
| TTCTCCCAGGTATCATTTGC+AGG | + | tig0006730:15732-15751 | None:intergenic | 45.0% | |
| ! | CAAGCAATGGTTTTTCTCCC+AGG | + | tig0006730:15745-15764 | None:intergenic | 45.0% |
| TCCTTTAGTGCTGCAGACTA+AGG | + | tig0006730:16065-16084 | None:intergenic | 45.0% | |
| ATTGAGGATCTTGAATGGCC+TGG | - | tig0006730:16089-16108 | Msa1343910:intron | 45.0% | |
| GTTATCTGGATGCTTGATCC+AGG | + | tig0006730:16110-16129 | None:intergenic | 45.0% | |
| ! | GATCTGGCTCCATAGTTATC+TGG | + | tig0006730:16124-16143 | None:intergenic | 45.0% |
| AACGTAACAGAAGGAGGATC+TGG | + | tig0006730:16140-16159 | None:intergenic | 45.0% | |
| TCAGCTCTCAACGTAACAGA+AGG | + | tig0006730:16149-16168 | None:intergenic | 45.0% | |
| TCTGTTACGTTGAGAGCTGA+AGG | - | tig0006730:16149-16168 | Msa1343910:intron | 45.0% | |
| CGAAAGCAATACAAACCTGC+AGG | + | tig0006730:16184-16203 | None:intergenic | 45.0% | |
| TTGTGCGAATTCCGAACTCT+TGG | - | tig0006730:16297-16316 | Msa1343910:intron | 45.0% | |
| AGCATTTCAGTGTGATCACC+AGG | - | tig0006730:16321-16340 | Msa1343910:intron | 45.0% | |
| ATAAGGGTGAGAGGTAGGTT+TGG | + | tig0006730:16584-16603 | None:intergenic | 45.0% | |
| AGAATCGACATAAGGGTGAG+AGG | + | tig0006730:16593-16612 | None:intergenic | 45.0% | |
| ! | AGTGTCATTGCACGGGAAAT+AGG | - | tig0006730:16901-16920 | Msa1343910:CDS | 45.0% |
| CATCCCGACCATGTCAGAAA+TGG | - | tig0006730:12443-12462 | Msa1343910:three_prime_UTR | 50.0% | |
| CGTCCATTTCTGACATGGTC+GGG | + | tig0006730:12449-12468 | None:intergenic | 50.0% | |
| ACCAGACGTTCTATGCGAAC+TGG | - | tig0006730:12476-12495 | Msa1343910:three_prime_UTR | 50.0% | |
| TCCAGTTCGCATAGAACGTC+TGG | + | tig0006730:12480-12499 | None:intergenic | 50.0% | |
| AATCTAACACGGCGTCTTGG+TGG | + | tig0006730:12551-12570 | None:intergenic | 50.0% | |
| !! | GCAGAAGTACGACCTCGTTT+TGG | - | tig0006730:12772-12791 | Msa1343910:CDS | 50.0% |
| ! | TTTTCGGTTCCGGGTCATTC+TGG | - | tig0006730:12832-12851 | Msa1343910:CDS | 50.0% |
| AGAAGCTGCATATCAGGACC+AGG | + | tig0006730:12877-12896 | None:intergenic | 50.0% | |
| GTGATTTCGTGTCTCGAGAC+AGG | - | tig0006730:13409-13428 | Msa1343910:intron | 50.0% | |
| GATTTCGTGTCTCGAGACAG+GGG | - | tig0006730:13411-13430 | Msa1343910:intron | 50.0% | |
| GCAACTAACGGTGGATCAGA+AGG | + | tig0006730:13452-13471 | None:intergenic | 50.0% | |
| CTGATCCACCGTTAGTTGCT+TGG | - | tig0006730:13453-13472 | Msa1343910:intron | 50.0% | |
| GGTAACCAAGCAACTAACGG+TGG | + | tig0006730:13461-13480 | None:intergenic | 50.0% | |
| TAGCAGTTGTGCGTTCGAAC+TGG | - | tig0006730:13563-13582 | Msa1343910:intron | 50.0% | |
| ATCCATCATGGCGGCACAAT+AGG | - | tig0006730:14087-14106 | Msa1343910:intron | 50.0% | |
| ! | TGGCGGATGGTGAAATATGG+TGG | + | tig0006730:14150-14169 | None:intergenic | 50.0% |
| !! | CGATGGCGGATGGTGAAATA+TGG | + | tig0006730:14153-14172 | None:intergenic | 50.0% |
| TGATGCAGTGTTGTCGATGG+CGG | + | tig0006730:14167-14186 | None:intergenic | 50.0% | |
| GAAGGGTCTACAAGGAGCTT+TGG | + | tig0006730:14369-14388 | None:intergenic | 50.0% | |
| !! | ATATTGGCCATGGCGGATTG+TGG | + | tig0006730:14607-14626 | None:intergenic | 50.0% |
| AACCGTGACAGGCAATCTGT+TGG | + | tig0006730:14812-14831 | Msa1343920:CDS | 50.0% | |
| TTTGTAGAAGGACCCTGAGG+TGG | + | tig0006730:15389-15408 | Msa1343920:CDS | 50.0% | |
| TCGCACCTGCAAATGATACC+TGG | - | tig0006730:15724-15743 | Msa1343910:intron | 50.0% | |
| CGCACCTGCAAATGATACCT+GGG | - | tig0006730:15725-15744 | Msa1343910:intron | 50.0% | |
| GCCTTAGTCTGCAGCACTAA+AGG | - | tig0006730:16061-16080 | Msa1343910:intron | 50.0% | |
| GCTCTCAACGTAACAGAAGG+AGG | + | tig0006730:16146-16165 | None:intergenic | 50.0% | |
| ACGTTGAGAGCTGAAGGACA+TGG | - | tig0006730:16155-16174 | Msa1343910:intron | 50.0% | |
| CGTTGAGAGCTGAAGGACAT+GGG | - | tig0006730:16156-16175 | Msa1343910:intron | 50.0% | |
| GTTGAGAGCTGAAGGACATG+GGG | - | tig0006730:16157-16176 | Msa1343910:intron | 50.0% | |
| TCGACATAAGGGTGAGAGGT+AGG | + | tig0006730:16589-16608 | None:intergenic | 50.0% | |
| !! | CACCCTTATGTCGATTCTGC+CGG | - | tig0006730:16595-16614 | Msa1343910:CDS | 50.0% |
| AGCCGGCAGAATCGACATAA+GGG | + | tig0006730:16600-16619 | None:intergenic | 50.0% | |
| TAGCCGGCAGAATCGACATA+AGG | + | tig0006730:16601-16620 | None:intergenic | 50.0% | |
| !! | TCGACCAGGTTGTTGATAGC+CGG | + | tig0006730:16617-16636 | None:intergenic | 50.0% |
| TTTCCACCGAACGGCGGTTA+AGG | + | tig0006730:12526-12545 | None:intergenic | 55.0% | |
| !! | TTGGTGGCGTTTCCACCGAA+CGG | + | tig0006730:12535-12554 | None:intergenic | 55.0% |
| AGCCTATTGTGCCGCCATGA+TGG | + | tig0006730:14092-14111 | None:intergenic | 55.0% | |
| GGCGGCACAATAGGCTGTAA+TGG | - | tig0006730:14096-14115 | Msa1343910:intron | 55.0% | |
| ! | GGTGGTGCCCTGACGTTTTA+TGG | + | tig0006730:14541-14560 | None:intergenic | 55.0% |
| !! | GTCAAAGGGTTAGTCCCAGC+AGG | + | tig0006730:15258-15277 | Msa1343920:CDS | 55.0% |
| GCTGCAGACTAAGGCCAGTT+TGG | + | tig0006730:16056-16075 | None:intergenic | 55.0% | |
| ! | TCTGCCGGCTATCAACAACC+TGG | - | tig0006730:16610-16629 | Msa1343910:CDS | 55.0% |
| TGGCAAACACACGAGGCGTA+TGG | + | tig0006730:16873-16892 | None:intergenic | 55.0% | |
| TCGACGCCTTAACCGCCGTT+CGG | - | tig0006730:12517-12536 | Msa1343910:three_prime_UTR | 60.0% | |
| !! | GCAGTGTTGTCGATGGCGGA+TGG | + | tig0006730:14163-14182 | None:intergenic | 60.0% |
| TCTCCCACCACAATCCGCCA+TGG | - | tig0006730:14597-14616 | Msa1343910:intron | 60.0% | |
| !! | TGGCCATGGCGGATTGTGGT+GGG | + | tig0006730:14603-14622 | None:intergenic | 60.0% |
| !! | TTGGCCATGGCGGATTGTGG+TGG | + | tig0006730:14604-14623 | None:intergenic | 60.0% |
| TAGAAGGACCCTGAGGTGGC+GGG | + | tig0006730:15385-15404 | Msa1343920:CDS | 60.0% | |
| GTAGAAGGACCCTGAGGTGG+CGG | + | tig0006730:15386-15405 | Msa1343920:CDS | 60.0% | |
| TGAAGGACATGGGGACCTGC+AGG | - | tig0006730:16166-16185 | Msa1343910:intron | 60.0% | |
| ACGCCTTAACCGCCGTTCGG+TGG | - | tig0006730:12520-12539 | Msa1343910:three_prime_UTR | 65.0% | |
| GTGGCGTTTCCACCGAACGG+CGG | + | tig0006730:12532-12551 | None:intergenic | 65.0% | |
| TACCAATCCCCCGCCACCTC+AGG | - | tig0006730:15373-15392 | Msa1343910:intron | 65.0% | |
| ACCAATCCCCCGCCACCTCA+GGG | - | tig0006730:15374-15393 | Msa1343910:intron | 65.0% | |
| AGAAGGACCCTGAGGTGGCG+GGG | + | tig0006730:15384-15403 | Msa1343920:CDS | 65.0% | |
| !! | ACCCTGAGGTGGCGGGGGAT+TGG | + | tig0006730:15378-15397 | Msa1343920:CDS | 70.0% |
| ! | GAAGGACCCTGAGGTGGCGG+GGG | + | tig0006730:15383-15402 | Msa1343920:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006730 | gene | 12364 | 17058 | 12364 | ID=Msa1343910;Name=Msa1343910 |
| tig0006730 | mRNA | 12364 | 17058 | 12364 | ID=Msa1343910-mRNA-1;Parent=Msa1343910;Name=Msa1343910-mRNA-1;_AED=0.22;_eAED=0.22;_QI=89|0.83|0.85|1|0.83|0.71|7|351|291 |
| tig0006730 | exon | 12364 | 12417 | 12364 | ID=Msa1343910-mRNA-1:exon:4341;Parent=Msa1343910-mRNA-1 |
| tig0006730 | exon | 12441 | 12969 | 12441 | ID=Msa1343910-mRNA-1:exon:4340;Parent=Msa1343910-mRNA-1 |
| tig0006730 | exon | 13069 | 13139 | 13069 | ID=Msa1343910-mRNA-1:exon:4339;Parent=Msa1343910-mRNA-1 |
| tig0006730 | exon | 13235 | 13339 | 13235 | ID=Msa1343910-mRNA-1:exon:4338;Parent=Msa1343910-mRNA-1 |
| tig0006730 | exon | 14132 | 14252 | 14132 | ID=Msa1343910-mRNA-1:exon:4337;Parent=Msa1343910-mRNA-1 |
| tig0006730 | exon | 16520 | 16674 | 16520 | ID=Msa1343910-mRNA-1:exon:4336;Parent=Msa1343910-mRNA-1 |
| tig0006730 | exon | 16778 | 17058 | 16778 | ID=Msa1343910-mRNA-1:exon:4335;Parent=Msa1343910-mRNA-1 |
| tig0006730 | five_prime_UTR | 16970 | 17058 | 16970 | ID=Msa1343910-mRNA-1:five_prime_utr;Parent=Msa1343910-mRNA-1 |
| tig0006730 | CDS | 16778 | 16969 | 16778 | ID=Msa1343910-mRNA-1:cds;Parent=Msa1343910-mRNA-1 |
| tig0006730 | CDS | 16520 | 16674 | 16520 | ID=Msa1343910-mRNA-1:cds;Parent=Msa1343910-mRNA-1 |
| tig0006730 | CDS | 14132 | 14252 | 14132 | ID=Msa1343910-mRNA-1:cds;Parent=Msa1343910-mRNA-1 |
| tig0006730 | CDS | 13235 | 13339 | 13235 | ID=Msa1343910-mRNA-1:cds;Parent=Msa1343910-mRNA-1 |
| tig0006730 | CDS | 13069 | 13139 | 13069 | ID=Msa1343910-mRNA-1:cds;Parent=Msa1343910-mRNA-1 |
| tig0006730 | CDS | 12738 | 12969 | 12738 | ID=Msa1343910-mRNA-1:cds;Parent=Msa1343910-mRNA-1 |
| tig0006730 | three_prime_UTR | 12441 | 12737 | 12441 | ID=Msa1343910-mRNA-1:three_prime_utr;Parent=Msa1343910-mRNA-1 |
| tig0006730 | three_prime_UTR | 12364 | 12417 | 12364 | ID=Msa1343910-mRNA-1:three_prime_utr;Parent=Msa1343910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
