AlfalfaGEDB | Msa1350660

M. sativa cultivar zhongmu-4 / Msa1350660

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF00989.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350660	XP_003609781.1	97.700	739	16	1	1	738	1	739	0.0	1504

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350660	sp\|Q9C9U5\|SIS8_ARATH	56.698	321	121	3	397	716	702	1005	1.65e-112	367

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350660	G7JNX1	97.700	739	16	1	1	738	1	739	0.0	1504

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1350660	Msa1434010	0.983665	2.288314e-158	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1350660	MtrunA17_Chr4g0068411	97.700	739	16	1	1	738	1	739	0.0	1504
Msa1350660	MtrunA17_Chr2g0294351	66.578	751	227	8	2	736	1	743	0.0	965
Msa1350660	MtrunA17_Chr5g0397931	63.707	259	94	0	453	711	417	675	2.04e-118	371
Msa1350660	MtrunA17_Chr5g0397931	36.364	176	93	4	86	254	65	228	5.61e-25	110
Msa1350660	MtrunA17_Chr1g0191171	59.712	278	112	0	446	723	676	953	7.87e-111	358
Msa1350660	MtrunA17_Chr6g0482711	56.014	291	128	0	429	719	630	920	4.66e-110	356
Msa1350660	MtrunA17_Chr1g0151541	60.377	265	105	0	452	716	656	920	7.89e-110	355
Msa1350660	MtrunA17_Chr8g0392871	57.586	290	121	2	440	728	719	1007	1.15e-108	354
Msa1350660	MtrunA17_Chr1g0179331	59.410	271	108	1	448	716	544	814	1.37e-105	341
Msa1350660	MtrunA17_Chr3g0132791	60.526	266	103	1	453	716	647	912	6.24e-105	342

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1350660	AT5G49470.3	59.031	764	267	12	13	737	13	769	863
Msa1350660	AT3G06620.1	56.104	770	287	12	13	738	11	773	835
Msa1350660	AT1G67890.1	57.330	764	275	12	13	737	13	764	829
Msa1350660	AT5G49470.4	57.748	755	265	14	13	737	13	743	805
Msa1350660	AT3G06630.2	57.123	723	273	11	8	721	2	696	792
Msa1350660	AT1G67890.3	57.341	722	257	12	13	695	13	722	778
Msa1350660	AT1G67890.2	57.341	722	257	12	13	695	13	722	778
Msa1350660	AT5G49470.2	52.053	828	284	17	13	737	13	830	771
Msa1350660	AT3G06640.2	53.681	747	275	9	9	728	13	715	771
Msa1350660	AT3G06640.3	53.681	747	275	9	9	728	13	715	771

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Find 193 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGTTGATCCAGGGT+GGG	0.605465	tig0011715:-38721	Msa1350660:CDS
AAAATAATTATATCTCACCA+GGG	0.633622	tig0011715:+37773	None:intergenic
AAACTTCCATCATCATAAAA+AGG	0.326517	tig0011715:+43309	None:intergenic
AAAGCATACCTCTTGTCTGA+AGG	0.583906	tig0011715:+41651	None:intergenic
AAAGTATGTCATTAAGTTCC+AGG	0.374351	tig0011715:-38084	Msa1350660:CDS
AAATCTCTATGGACAATCGG+CGG	0.621318	tig0011715:+39636	None:intergenic
AAATGATCGAGAAGAATCAG+AGG	0.604547	tig0011715:-42697	Msa1350660:CDS
AACATCATCATCATCGTCAA+AGG	0.562509	tig0011715:-44291	Msa1350660:CDS
AACATTATAGGAGGAAGAAC+GGG	0.491819	tig0011715:+42530	None:intergenic
AACCAGAAGATTATTTCTTC+TGG	0.294407	tig0011715:-42615	Msa1350660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAAGCTTAAACTTAGTGA+TGG	-	tig0011715:37760-37779	Msa1350660:three_prime_UTR	30.0%
CACTCCAATGTTATATGTTA+TGG	-	tig0011715:38071-38090	Msa1350660:CDS	30.0%
TAAAAAATTGATGTGCTTCC+TGG	-	tig0011715:38437-38456	Msa1350660:intron	30.0%
TACAGTGAATTGTGTTATGA+AGG	-	tig0011715:38676-38695	Msa1350660:intron	30.0%
ACAGTGAATTGTGTTATGAA+GGG	-	tig0011715:38677-38696	Msa1350660:intron	30.0%
TTATGCAATTTAGTATCCTG+TGG	-	tig0011715:39003-39022	Msa1350660:intron	30.0%
TAATCACCCTACTAATAATG+AGG	-	tig0011715:39520-39539	Msa1350660:intron	30.0%
TAACATTATAGGAGGAAGAA+CGG	+	tig0011715:39556-39575	None:intergenic	30.0%
TTGACAATTCGAGAACAAAT+TGG	-	tig0011715:39683-39702	Msa1350660:intron	30.0%
TAAGTTGCACTCTTAACTAA+AGG	-	tig0011715:39712-39731	Msa1350660:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0011715	gene	37569	44535	37569	ID=Msa1350660;Name=Msa1350660
tig0011715	mRNA	37569	44535	37569	ID=Msa1350660-mRNA-1;Parent=Msa1350660;Name=Msa1350660-mRNA-1;_AED=0.09;_eAED=0.09;_QI=104\|1\|1\|1\|1\|1\|13\|468\|738
tig0011715	exon	37569	38166	37569	ID=Msa1350660-mRNA-1:exon:7506;Parent=Msa1350660-mRNA-1
tig0011715	exon	38693	38787	38693	ID=Msa1350660-mRNA-1:exon:7505;Parent=Msa1350660-mRNA-1
tig0011715	exon	39035	39116	39035	ID=Msa1350660-mRNA-1:exon:7504;Parent=Msa1350660-mRNA-1
tig0011715	exon	39218	39267	39218	ID=Msa1350660-mRNA-1:exon:7503;Parent=Msa1350660-mRNA-1
tig0011715	exon	39393	39461	39393	ID=Msa1350660-mRNA-1:exon:7502;Parent=Msa1350660-mRNA-1
tig0011715	exon	39593	39691	39593	ID=Msa1350660-mRNA-1:exon:7501;Parent=Msa1350660-mRNA-1
tig0011715	exon	39863	39941	39863	ID=Msa1350660-mRNA-1:exon:7500;Parent=Msa1350660-mRNA-1
tig0011715	exon	40077	40177	40077	ID=Msa1350660-mRNA-1:exon:7499;Parent=Msa1350660-mRNA-1
tig0011715	exon	41660	41728	41660	ID=Msa1350660-mRNA-1:exon:7498;Parent=Msa1350660-mRNA-1
tig0011715	exon	42095	42135	42095	ID=Msa1350660-mRNA-1:exon:7497;Parent=Msa1350660-mRNA-1
tig0011715	exon	42394	43045	42394	ID=Msa1350660-mRNA-1:exon:7496;Parent=Msa1350660-mRNA-1
tig0011715	exon	43125	43533	43125	ID=Msa1350660-mRNA-1:exon:7495;Parent=Msa1350660-mRNA-1
tig0011715	exon	44091	44535	44091	ID=Msa1350660-mRNA-1:exon:7494;Parent=Msa1350660-mRNA-1
tig0011715	five_prime_UTR	44432	44535	44432	ID=Msa1350660-mRNA-1:five_prime_utr;Parent=Msa1350660-mRNA-1
tig0011715	CDS	44091	44431	44091	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	43125	43533	43125	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	42394	43045	42394	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	42095	42135	42095	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	41660	41728	41660	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	40077	40177	40077	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	39863	39941	39863	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	39593	39691	39593	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	39393	39461	39393	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	39218	39267	39218	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	39035	39116	39035	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	38693	38787	38693	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	CDS	38037	38166	38037	ID=Msa1350660-mRNA-1:cds;Parent=Msa1350660-mRNA-1
tig0011715	three_prime_UTR	37569	38036	37569	ID=Msa1350660-mRNA-1:three_prime_utr;Parent=Msa1350660-mRNA-1

Gene Sequence

>Msa1350660

ATGATGGGAAGTGAAGAAAGAGAGAAAGCAGTTGAGAAGAAGATCCAAGAGTTAGAAGAAGGACATGCTTACATGAAACAAGAAATGTCAAAGCTTAAACTTAGTGATGGAAGACAACAACATCATCATCATCGTCAAAGGTCTCACTCTGTGTCACCTCAACGTTCTAGATTAGGTTCTTGGAACAAAGGTTCTTGTTCTTTCAAACACTCTTCACCTCTCAGAAAGGAAACTCATGCTCACGCGCTTGTTAATTTCACTGAAAAACATTATCTCAATATTTTACATTCTTTGGGACATTCTCTTCATATTTTGGATCTTAATTCTCGTATCATTTACTGGAACCGTAGTGCTGAAAATCTATACGGTTATGCAGCAGATGAAGTTTTGGGACAGGATGGGATTGATTTGCTTGTGGACTCTAGGGATTGGGAATTAGCTTGTGATACAGTGAATTGTGTTATGAAGGGAGAGAGATGGAGTGGTCAATTCCTAGTCAAGAACAAGAAAGGAGAAAGGTTTTTAGCTGTAACAACTAATACTCCTTTTTATGATGATGGAAGTTTAGTTGGGATTATCTGTGTGTCGAGTGATTCTCGTCCGTTTCTTGAAATGAGAGCTCCATTCTTTGGTGTAAAGAATGCTGAATCGGATTATAGTATCCGTCGTAGCAGTAGTGTTTCAAATAAACTTGGCTTTGACTCTCAGCAGCCACTACAAACTGCTCTAGCATCTAAAATTTCAAATTTGGCGTCGAAGATGGGTAACAAAGTTAAGTCGAAGATCTGGACGGGAGAAAATAACATGGACCGTGAAGGTGGGAATGGAGAAAGTCAACATTCTGAACTTGGTTTCTCAGAACACAGAGAAGATGCTAATTCAAGCGGAGCTAGCACGCCTAAAGGTGATTTGCCACAGTCCCCTGTTGGTGTATTTTATCGTGTTGAGGAAAAGTTTGAAGCAAAAACTTCGAGAGACTCTGGTGATGAGAGTGAAGGAAAACCTGTTAACAAAAGTTTACCTACTAAGCCTGAAACCTGGATTCAAAAGAAAACATCAACATGGCCATGGAGAACAAATGATCGAGAAGAATCAGAGGCAAGGAACGTTCGTCCTGCTGAGCCGTGGAGGCAGAACGATCAAGAAAATGAGTCAGTTAACCAGAAGATTATTTCTTCTGGCTTGAAGCACGAAAAGCAGGCTGGTGAAAGTAATCACCCTACTAATAATGAGGCTTCACTATCCCGTTCTTCCTCCTATAATGTTAACAGCACAAGTAGTGCCAGCAGCTGCGGGAGTACTGGCAGTGGTGCTGTCAGCAGTAAAGTGGACGCAGACAATGATTGCTTTGATTATGAAATTTTGTGGGAGGATTTGACAATTCGAGAACAAATTGGACAGGGTTGTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAGTATTCAGATGATTTGATACTATCCTTCAGACAAGAGGTATCTGTCATGAAAAGACTTCGGCACCCAAATATTCTTCTCTTTATGGGAGCAGTGACTTCACCCCAACGTCTCTGCATTGTGACAGAGTTTCTCCCGCGTGGAAGCTTGTGTCGCTTGTTACACCGAAACACGCCCAAACTTGACTGGAGACGACGAGTTCAGATGGCCTTGGATATTGCGCGAGGCATAAATTATCTTCATCATTATAACCCGCCGATTGTCCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCATGAAACATATCTCACAACTAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCGTCAGATGAGAAGTCTGATGTGTACAGCTTTGGGGTGATATTATGGGAACTCGCGACTGAAAAGATTCCTTGGGATAATCTCAACCCAATGCAGGTAATTGGAGCTGTAGGGTTCATGAATCAGCGTCCAGAAATTCCAAAAGATGTTGATCCAGGGTGGGCTTCTTTAATTGAGATCTGTTGGCACAGTGATCCAACTCGTCGACCAACTTTTCTGGAACTGCTTGAAAGGCTTAGAGAGTTGCAAAAAAAGTATGTCATTAAGTTCCAGGCAGCCCGGTCTGCTAGTGGGGAAAGCACCCAAAGAAAGGAGTCCTAG

Protein sequence

>Msa1350660

MMGSEEREKAVEKKIQELEEGHAYMKQEMSKLKLSDGRQQHHHHRQRSHSVSPQRSRLGSWNKGSCSFKHSSPLRKETHAHALVNFTEKHYLNILHSLGHSLHILDLNSRIIYWNRSAENLYGYAADEVLGQDGIDLLVDSRDWELACDTVNCVMKGERWSGQFLVKNKKGERFLAVTTNTPFYDDGSLVGIICVSSDSRPFLEMRAPFFGVKNAESDYSIRRSSSVSNKLGFDSQQPLQTALASKISNLASKMGNKVKSKIWTGENNMDREGGNGESQHSELGFSEHREDANSSGASTPKGDLPQSPVGVFYRVEEKFEAKTSRDSGDESEGKPVNKSLPTKPETWIQKKTSTWPWRTNDREESEARNVRPAEPWRQNDQENESVNQKIISSGLKHEKQAGESNHPTNNEASLSRSSSYNVNSTSSASSCGSTGSGAVSSKVDADNDCFDYEILWEDLTIREQIGQGCCGTVYHALWYGSDVAVKVFSKQEYSDDLILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVQMALDIARGINYLHHYNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNPMQVIGAVGFMNQRPEIPKDVDPGWASLIEICWHSDPTRRPTFLELLERLRELQKKYVIKFQAARSASGESTQRKES*