AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352560 MtrunA17_Chr7g0273281 95.626 503 11 3 1 493 1 502 0.0 960
Msa1352560 MtrunA17_Chr4g0066581 56.250 464 196 3 29 489 30 489 0.0 528
Msa1352560 MtrunA17_Chr2g0286721 53.879 464 209 2 26 488 26 485 6.21e-177 506
Msa1352560 MtrunA17_Chr7g0259471 51.549 452 219 0 37 488 24 475 2.62e-162 468
Msa1352560 MtrunA17_Chr7g0259221 52.212 452 216 0 37 488 26 477 2.45e-161 466
Msa1352560 MtrunA17_Chr1g0155221 46.723 473 234 3 17 483 25 485 1.71e-142 418
Msa1352560 MtrunA17_Chr8g0373181 47.816 435 222 2 58 487 52 486 2.47e-139 410
Msa1352560 MtrunA17_Chr7g0273261 80.531 226 42 1 262 487 15 238 9.34e-129 374
Msa1352560 MtrunA17_Chr8g0373191 44.419 439 219 3 53 486 39 457 6.42e-119 357
Msa1352560 MtrunA17_Chr7g0273271 77.419 186 40 1 49 232 21 206 7.23e-100 299
Msa1352560 MtrunA17_Chr6g0457781 33.063 493 288 13 20 490 74 546 3.10e-71 236
Msa1352560 MtrunA17_Chr7g0250881 32.657 493 298 13 16 490 30 506 1.05e-70 233
Msa1352560 MtrunA17_Chr5g0404191 45.267 243 131 1 27 269 26 266 3.47e-70 226
Msa1352560 MtrunA17_Chr4g0021771 30.279 502 305 10 11 483 14 499 1.64e-65 220
Msa1352560 MtrunA17_Chr2g0282031 33.107 441 275 7 60 483 60 497 3.44e-60 206
Msa1352560 MtrunA17_Chr4g0032021 31.076 502 299 12 18 486 67 554 1.59e-58 202
Msa1352560 MtrunA17_Chr1g0213631 34.271 391 228 8 113 483 48 429 3.46e-56 194
Msa1352560 MtrunA17_Chr1g0213611 31.646 474 282 12 39 483 65 525 3.54e-56 196
Msa1352560 MtrunA17_Chr4g0039651 30.041 486 302 9 31 484 19 498 1.70e-55 193
Msa1352560 MtrunA17_Chr7g0214451 31.760 466 288 11 39 483 20 476 1.71e-52 185
Msa1352560 MtrunA17_Chr3g0144361 28.226 496 318 8 22 486 3 491 1.35e-51 182
Msa1352560 MtrunA17_Chr4g0034681 29.175 497 309 13 21 486 7 491 3.04e-51 182
Msa1352560 MtrunA17_Chr4g0036021 28.384 458 301 6 58 488 32 489 2.38e-49 177
Msa1352560 MtrunA17_Chr6g0486021 27.926 487 315 10 22 486 14 486 2.44e-49 176
Msa1352560 MtrunA17_Chr4g0004821 29.449 472 305 9 28 486 16 472 1.22e-48 174
Msa1352560 MtrunA17_Chr6g0485661 28.778 483 303 11 29 478 28 502 5.96e-48 173
Msa1352560 MtrunA17_Chr5g0432581 28.976 459 290 8 58 483 24 479 5.77e-47 170
Msa1352560 MtrunA17_Chr8g0373531 27.731 476 299 10 62 493 15 489 6.05e-44 162
Msa1352560 MtrunA17_Chr1g0205691 30.423 378 248 5 118 482 108 483 2.71e-43 160
Msa1352560 MtrunA17_Chr5g0394341 27.543 403 277 5 93 482 83 483 3.74e-43 160
Msa1352560 MtrunA17_Chr3g0119401 25.657 495 328 11 22 490 56 536 1.14e-42 159
Msa1352560 MtrunA17_Chr5g0420841 29.268 410 265 9 93 483 82 485 1.69e-41 155
Msa1352560 MtrunA17_Chr3g0085971 30.244 410 261 8 93 483 82 485 2.09e-41 155
Msa1352560 MtrunA17_Chr3g0078791 27.654 405 256 7 93 482 28 410 4.59e-40 149
Msa1352560 MtrunA17_Chr1g0205671 24.490 490 323 9 28 482 6 483 1.12e-39 150
Msa1352560 MtrunA17_Chr4g0048411 28.184 479 297 10 51 489 21 492 1.53e-39 150
Msa1352560 MtrunA17_Chr8g0390141 28.218 404 272 8 93 482 86 485 3.05e-39 149
Msa1352560 MtrunA17_Chr3g0115721 26.055 403 284 5 93 482 82 483 4.86e-39 148
Msa1352560 MtrunA17_Chr3g0128171 26.471 408 277 7 93 482 36 438 8.56e-39 147
Msa1352560 MtrunA17_Chr8g0390521 27.021 470 316 8 37 483 3 468 1.23e-38 147
Msa1352560 MtrunA17_Chr3g0128081 27.924 419 279 7 93 493 83 496 4.20e-38 145
Msa1352560 MtrunA17_Chr5g0403831 27.273 506 318 14 20 490 9 499 1.01e-37 144
Msa1352560 MtrunA17_Chr4g0065324 27.494 411 279 7 93 489 88 493 1.95e-37 144
Msa1352560 MtrunA17_Chr5g0417611 25.311 482 313 10 40 482 13 486 2.51e-37 143
Msa1352560 MtrunA17_Chr5g0437021 27.254 488 315 9 36 489 9 490 2.56e-37 143
Msa1352560 MtrunA17_Chr3g0078971 26.694 487 309 11 35 483 8 484 3.75e-37 143
Msa1352560 MtrunA17_Chr1g0205681 25.728 412 285 7 91 486 82 488 1.43e-36 141
Msa1352560 MtrunA17_Chr4g0048051 27.447 470 298 8 51 482 21 485 1.72e-36 141
Msa1352560 MtrunA17_Chr1g0164851 26.694 487 317 9 37 489 10 490 1.99e-36 141
Msa1352560 MtrunA17_Chr8g0390261 27.206 408 271 9 93 482 86 485 2.30e-36 140
Msa1352560 MtrunA17_Chr1g0164871 26.489 487 318 9 37 489 10 490 3.18e-36 140
Msa1352560 MtrunA17_Chr5g0404181 50.769 130 56 2 364 487 5 132 5.21e-36 130
Msa1352560 MtrunA17_Chr4g0065311 25.564 399 284 5 95 482 82 478 9.32e-36 139
Msa1352560 MtrunA17_Chr3g0115741 24.324 407 286 6 93 482 85 486 1.20e-34 136
Msa1352560 MtrunA17_Chr6g0486681 28.744 414 257 11 93 482 86 485 1.28e-34 135
Msa1352560 MtrunA17_Chr6g0486671 28.744 414 257 11 93 482 86 485 1.28e-34 135
Msa1352560 MtrunA17_Chr3g0121674 30.000 280 182 6 213 482 7 282 6.12e-34 130
Msa1352560 MtrunA17_Chr2g0303731 29.217 332 217 7 63 377 36 366 1.38e-33 134
Msa1352560 MtrunA17_Chr2g0303731 35.185 108 69 1 386 492 452 559 3.46e-13 72.0
Msa1352560 MtrunA17_Chr3g0115711 24.814 403 290 6 92 482 81 482 3.10e-33 132
Msa1352560 MtrunA17_Chr2g0290181 29.371 286 180 6 111 377 88 370 1.29e-32 131
Msa1352560 MtrunA17_Chr2g0290181 36.190 105 66 1 385 488 454 558 2.12e-13 72.4
Msa1352560 MtrunA17_Chr3g0115751 25.926 405 282 8 93 482 87 488 1.54e-32 130
Msa1352560 MtrunA17_Chr3g0115781 23.284 408 291 5 93 483 84 486 3.81e-32 129
Msa1352560 MtrunA17_Chr2g0303701 28.522 291 185 7 113 389 89 370 1.33e-31 128
Msa1352560 MtrunA17_Chr3g0078991 24.843 479 323 11 38 483 11 485 1.67e-31 127
Msa1352560 MtrunA17_Chr8g0376611 28.720 289 193 5 102 377 11 299 2.66e-30 123
Msa1352560 MtrunA17_Chr8g0376611 34.259 108 70 1 386 492 382 489 4.15e-13 71.6
Msa1352560 MtrunA17_Chr5g0445601 26.316 399 281 6 95 482 88 484 3.68e-30 123
Msa1352560 MtrunA17_Chr8g0376631 30.651 261 166 6 109 355 85 344 1.91e-29 121
Msa1352560 MtrunA17_Chr8g0376631 34.821 112 64 2 386 492 451 558 4.36e-13 71.6
Msa1352560 MtrunA17_Chr8g0376601 28.920 287 184 6 115 387 91 371 3.80e-29 120
Msa1352560 MtrunA17_Chr8g0376601 40.217 92 54 1 386 476 450 541 2.53e-12 69.3
Msa1352560 MtrunA17_Chr7g0257631 25.815 399 283 6 95 482 122 518 2.61e-28 118
Msa1352560 MtrunA17_Chr7g0221631 60.759 79 30 1 375 453 40 117 1.58e-27 106
Msa1352560 MtrunA17_Chr3g0115731 26.481 287 202 3 204 482 177 462 4.45e-26 110
Msa1352560 MtrunA17_Chr2g0290161 27.376 263 153 6 111 359 21 259 9.07e-23 101
Msa1352560 MtrunA17_Chr4g0065351 25.697 323 227 6 171 482 1 321 1.02e-22 99.4
Msa1352560 MtrunA17_Chr5g0419321 33.178 214 118 4 287 482 525 731 1.04e-22 102
Msa1352560 MtrunA17_Chr5g0419321 30.500 200 129 4 66 258 49 245 6.85e-19 90.1
Msa1352560 MtrunA17_Chr8g0370151 33.036 224 131 4 274 482 125 344 3.00e-22 98.2
Msa1352560 MtrunA17_Chr3g0146061 31.797 217 131 4 280 482 510 723 5.87e-22 99.8
Msa1352560 MtrunA17_Chr3g0146061 35.032 157 95 2 101 250 54 210 1.37e-16 82.8
Msa1352560 MtrunA17_Chr3g0144261 35.610 205 119 5 81 277 32 231 8.95e-22 99.0
Msa1352560 MtrunA17_Chr3g0144261 30.876 217 119 5 287 482 507 713 5.19e-18 87.4
Msa1352560 MtrunA17_Chr5g0407441 31.429 210 127 3 287 482 499 705 1.83e-20 95.1
Msa1352560 MtrunA17_Chr5g0407441 34.810 158 95 3 108 258 61 217 2.85e-17 85.1
Msa1352560 MtrunA17_Chr7g0259451 72.000 50 14 0 402 451 1 50 4.25e-19 80.9
Msa1352560 MtrunA17_Chr5g0434261 28.105 306 169 9 213 476 7 303 2.60e-18 85.9
Msa1352560 MtrunA17_Chr5g0434231 30.263 152 87 1 97 248 9 141 4.08e-15 72.8
Msa1352560 MtrunA17_Chr8g0370141 31.285 179 110 5 108 278 61 234 2.58e-14 74.7
Msa1352560 MtrunA17_Chr2g0319001 24.938 401 250 18 102 474 133 510 3.86e-14 74.7
Msa1352560 MtrunA17_Chr5g0434251 34.259 108 70 1 386 492 38 145 2.31e-13 67.8
Msa1352560 MtrunA17_Chr5g0446681 29.710 138 81 1 55 192 24 145 4.42e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352560 AT1G54730.2 67.209 430 141 0 58 487 37 466 0.0 596
Msa1352560 AT1G54730.5 62.791 430 139 1 58 487 37 445 0.0 545
Msa1352560 AT1G54730.3 66.247 397 134 0 58 454 37 433 0.0 542
Msa1352560 AT2G48020.2 54.110 438 201 0 50 487 25 462 2.91e-174 498
Msa1352560 AT2G48020.1 54.110 438 201 0 50 487 25 462 2.91e-174 498
Msa1352560 AT1G54730.4 61.461 397 132 1 58 454 37 412 4.21e-172 491
Msa1352560 AT5G18840.1 52.542 472 217 2 20 490 17 482 9.36e-171 490
Msa1352560 AT1G54730.9 65.738 359 123 0 59 417 38 396 7.04e-170 485
Msa1352560 AT1G54730.7 65.738 359 123 0 59 417 38 396 7.04e-170 485
Msa1352560 AT3G05150.1 49.356 466 226 2 29 484 2 467 2.06e-158 458
Msa1352560 AT3G05150.3 49.356 466 226 2 29 484 2 467 2.06e-158 458
Msa1352560 AT3G05150.2 49.356 466 226 2 29 484 2 467 2.80e-158 458
Msa1352560 AT3G05165.3 47.537 467 240 2 26 490 4 467 8.14e-157 454
Msa1352560 AT3G05165.2 47.537 467 240 2 26 490 4 467 8.14e-157 454
Msa1352560 AT3G05165.1 47.537 467 240 2 26 490 4 467 8.14e-157 454
Msa1352560 AT3G05160.1 47.021 470 237 2 21 490 1 458 5.56e-155 449
Msa1352560 AT3G05155.1 49.888 447 220 2 42 487 16 459 3.84e-153 444
Msa1352560 AT1G08930.1 48.736 435 223 0 55 489 60 494 5.47e-153 445
Msa1352560 AT1G08930.2 48.736 435 223 0 55 489 60 494 5.47e-153 445
Msa1352560 AT3G05400.1 48.315 445 230 0 42 486 15 459 6.21e-153 444
Msa1352560 AT1G08920.1 50.461 434 215 0 55 488 34 467 8.58e-153 444
Msa1352560 AT5G27360.1 47.289 461 243 0 26 486 8 468 5.92e-152 442
Msa1352560 AT5G27360.3 47.289 461 243 0 26 486 56 516 2.94e-151 442
Msa1352560 AT1G08920.2 49.433 441 216 1 55 488 34 474 8.68e-151 439
Msa1352560 AT1G54730.8 60.278 360 122 1 58 417 37 375 4.46e-150 434
Msa1352560 AT5G27350.1 49.333 450 224 1 41 486 15 464 7.07e-150 437
Msa1352560 AT3G05160.3 49.633 409 206 0 82 490 1 409 3.79e-147 427
Msa1352560 AT3G05160.2 49.633 409 206 0 82 490 1 409 3.79e-147 427
Msa1352560 AT3G20460.1 44.720 483 261 2 5 487 11 487 5.70e-144 422
Msa1352560 AT4G04750.1 46.170 470 247 2 30 493 9 478 4.44e-143 419
Msa1352560 AT4G04750.2 46.170 470 247 2 30 493 9 478 4.44e-143 419
Msa1352560 AT4G04760.1 49.195 435 218 1 53 484 31 465 5.33e-143 419
Msa1352560 AT1G54730.11 66.443 298 100 0 58 355 37 334 1.54e-142 413
Msa1352560 AT4G04750.3 46.467 467 244 2 30 490 53 519 2.01e-142 419
Msa1352560 AT1G08890.1 48.667 450 229 2 38 486 12 460 2.57e-142 417
Msa1352560 AT1G08900.1 46.882 465 237 2 24 486 2 458 8.20e-142 416
Msa1352560 AT1G08900.2 46.882 465 237 2 24 486 2 458 8.20e-142 416
Msa1352560 AT3G05165.6 46.636 431 225 2 26 454 4 431 1.68e-140 414
Msa1352560 AT3G05400.2 45.843 445 221 1 42 486 15 439 2.63e-139 409
Msa1352560 AT1G75220.1 47.149 456 230 3 37 484 32 484 3.59e-137 405
Msa1352560 AT1G19450.1 46.070 458 232 3 37 484 33 485 1.67e-136 403
Msa1352560 AT1G08920.3 49.622 397 200 0 55 451 34 430 5.23e-136 400
Msa1352560 AT1G08900.5 48.317 416 215 0 71 486 1 416 3.44e-135 397
Msa1352560 AT4G04760.3 49.507 406 202 1 82 484 1 406 1.05e-134 396
Msa1352560 AT1G08900.3 45.806 465 234 3 24 486 2 450 1.21e-134 397
Msa1352560 AT3G05165.4 45.823 419 222 2 26 442 4 419 4.18e-132 391
Msa1352560 AT3G05165.5 45.823 419 222 2 26 442 4 419 4.18e-132 391
Msa1352560 AT4G04760.2 46.682 437 223 3 53 484 31 462 1.62e-129 385
Msa1352560 AT5G27360.2 50.000 364 182 0 123 486 1 364 2.73e-128 378
Msa1352560 AT5G27360.5 50.000 364 182 0 123 486 1 364 2.73e-128 378
Msa1352560 AT1G54730.10 63.475 282 103 0 58 339 37 318 6.66e-127 372
Msa1352560 AT1G54730.6 63.475 282 103 0 58 339 37 318 6.66e-127 372
Msa1352560 AT1G08900.4 45.814 430 223 2 24 451 2 423 3.46e-126 375
Msa1352560 AT2G48020.4 51.297 347 168 1 48 393 22 368 5.50e-124 367
Msa1352560 AT5G27360.4 40.603 431 239 1 26 456 8 421 5.26e-114 343
Msa1352560 AT2G48020.3 51.935 310 148 1 48 356 22 331 3.73e-111 333
Msa1352560 AT3G05155.2 48.726 314 158 1 42 355 16 326 6.10e-102 309
Msa1352560 AT5G16150.2 32.854 487 298 11 20 490 73 546 1.55e-66 224
Msa1352560 AT5G16150.1 32.854 487 298 11 20 490 73 546 1.55e-66 224
Msa1352560 AT5G16150.3 32.854 487 298 11 20 490 73 546 1.55e-66 224
Msa1352560 AT2G20780.1 30.408 490 318 7 11 483 14 497 1.81e-64 218
Msa1352560 AT5G17010.1 30.986 497 303 11 21 484 11 500 3.35e-58 201
Msa1352560 AT5G17010.3 30.986 497 303 11 21 484 11 500 3.35e-58 201
Msa1352560 AT5G17010.4 30.986 497 303 11 21 484 11 500 3.35e-58 201
Msa1352560 AT2G20780.2 31.616 427 270 6 84 493 28 449 1.38e-57 198
Msa1352560 AT3G03090.1 32.186 494 285 14 29 484 19 500 1.04e-55 194
Msa1352560 AT2G43330.1 32.316 393 234 9 113 483 94 476 1.25e-54 191
Msa1352560 AT5G59250.1 29.960 504 309 10 16 486 64 556 1.65e-52 186
Msa1352560 AT2G16130.1 29.638 469 294 7 58 493 31 496 4.31e-50 179
Msa1352560 AT1G67300.2 28.723 470 317 8 29 486 27 490 6.69e-50 178
Msa1352560 AT3G18830.1 28.884 457 292 8 58 483 41 495 7.13e-50 179
Msa1352560 AT1G67300.1 28.602 472 314 9 29 486 27 489 1.52e-49 177
Msa1352560 AT1G67300.3 28.602 472 314 9 29 486 27 489 1.52e-49 177
Msa1352560 AT2G16120.1 28.782 476 296 8 58 493 31 503 9.31e-49 175
Msa1352560 AT1G79820.2 31.042 451 278 10 58 490 59 494 4.36e-46 168
Msa1352560 AT1G79820.1 31.042 451 278 10 58 490 59 494 4.36e-46 168
Msa1352560 AT4G36670.1 29.060 468 295 8 58 492 22 485 7.44e-45 164
Msa1352560 AT1G05030.1 26.611 481 318 9 35 490 51 521 8.18e-45 165
Msa1352560 AT2G18480.1 27.171 449 291 8 67 483 36 480 1.93e-43 160
Msa1352560 AT1G05030.2 28.256 407 269 7 97 490 73 469 2.14e-43 160
Msa1352560 AT1G11260.1 27.049 488 306 11 35 482 8 485 4.08e-43 160
Msa1352560 AT1G67300.6 28.058 417 278 8 29 432 27 434 5.18e-42 155
Msa1352560 AT1G67300.7 28.058 417 278 8 29 432 27 434 5.18e-42 155
Msa1352560 AT5G26340.1 26.708 483 311 9 36 482 9 484 1.80e-41 155
Msa1352560 AT1G67300.4 28.256 407 270 8 29 422 27 424 1.09e-40 152
Msa1352560 AT1G67300.5 28.256 407 270 8 29 422 27 424 1.09e-40 152
Msa1352560 AT5G26250.1 28.325 406 276 6 93 486 81 483 2.59e-39 149
Msa1352560 AT1G79820.4 30.946 391 242 8 58 433 59 436 2.93e-39 148
Msa1352560 AT4G21480.1 26.653 484 312 11 44 489 12 490 1.52e-37 144
Msa1352560 AT5G23270.1 25.971 489 312 9 34 482 8 486 1.88e-36 141
Msa1352560 AT3G19940.1 26.238 404 281 6 93 482 85 485 2.05e-36 141
Msa1352560 AT3G05960.1 27.094 406 281 6 93 486 80 482 2.43e-36 141
Msa1352560 AT1G50310.1 24.678 466 307 7 55 482 27 486 2.74e-35 138
Msa1352560 AT4G02050.2 25.159 473 319 7 40 482 17 484 1.27e-33 133
Msa1352560 AT4G02050.1 25.159 473 319 7 40 482 17 484 1.27e-33 133
Msa1352560 AT3G19930.1 25.726 482 310 11 40 483 13 484 1.54e-33 133
Msa1352560 AT3G19930.2 25.726 482 310 11 40 483 13 484 1.54e-33 133
Msa1352560 AT5G17010.2 26.358 497 258 12 22 485 17 438 2.75e-33 131
Msa1352560 AT1G07340.1 28.218 404 272 8 93 482 82 481 3.40e-33 132
Msa1352560 AT2G35740.1 30.903 288 173 8 97 362 73 356 1.58e-32 131
Msa1352560 AT2G35740.1 37.864 103 63 1 386 487 458 560 7.60e-14 74.3
Msa1352560 AT1G79820.3 29.018 448 243 12 58 490 59 446 4.48e-32 128
Msa1352560 AT1G77210.2 26.733 404 278 8 93 482 86 485 1.57e-31 127
Msa1352560 AT1G77210.1 26.733 404 278 8 93 482 86 485 1.57e-31 127
Msa1352560 AT1G34580.2 27.681 401 267 8 95 476 35 431 1.22e-30 124
Msa1352560 AT1G34580.1 27.273 407 273 8 95 482 85 487 2.63e-30 124
Msa1352560 AT1G30220.1 30.116 259 166 6 115 359 93 350 3.90e-30 124
Msa1352560 AT1G30220.1 37.963 108 66 1 386 492 455 562 2.69e-14 75.9
Msa1352560 AT4G16480.2 30.137 292 172 6 113 380 90 373 1.26e-29 122
Msa1352560 AT4G16480.2 36.893 103 64 1 386 487 459 561 7.83e-14 74.3
Msa1352560 AT4G16480.3 30.137 292 172 6 113 380 90 373 1.26e-29 122
Msa1352560 AT4G16480.3 36.893 103 64 1 386 487 459 561 7.83e-14 74.3
Msa1352560 AT4G16480.1 30.137 292 172 6 113 380 90 373 1.26e-29 122
Msa1352560 AT4G16480.1 36.893 103 64 1 386 487 459 561 7.83e-14 74.3
Msa1352560 AT1G50310.2 25.298 336 227 5 165 482 14 343 1.23e-27 114
Msa1352560 AT5G61520.2 24.814 403 282 7 95 482 43 439 1.29e-27 115
Msa1352560 AT5G61520.1 24.814 403 282 7 95 482 91 487 2.54e-27 115
Msa1352560 AT1G77210.3 27.327 333 224 8 164 482 8 336 1.89e-26 110
Msa1352560 AT3G51490.3 30.876 217 119 4 287 482 460 666 2.90e-22 100
Msa1352560 AT3G51490.3 33.333 165 102 3 101 258 4 167 4.23e-17 84.7
Msa1352560 AT3G51490.2 30.876 217 119 4 287 482 510 716 3.55e-22 100
Msa1352560 AT3G51490.2 33.333 165 102 3 101 258 54 217 5.38e-17 84.7
Msa1352560 AT4G35300.5 33.019 212 121 4 287 482 319 525 5.70e-22 99.4
Msa1352560 AT4G35300.9 33.019 212 121 4 287 482 506 712 1.10e-21 99.4
Msa1352560 AT4G35300.9 35.152 165 99 3 101 258 54 217 6.67e-18 87.4
Msa1352560 AT4G35300.2 33.019 212 121 4 287 482 506 712 1.10e-21 99.4
Msa1352560 AT4G35300.2 35.152 165 99 3 101 258 54 217 6.67e-18 87.4
Msa1352560 AT4G35300.3 33.019 212 121 4 287 482 506 712 1.10e-21 99.4
Msa1352560 AT4G35300.3 35.152 165 99 3 101 258 54 217 6.67e-18 87.4
Msa1352560 AT4G35300.4 33.019 212 121 4 287 482 516 722 1.17e-21 99.0
Msa1352560 AT4G35300.4 35.152 165 99 3 101 258 54 217 6.80e-18 87.4
Msa1352560 AT4G35300.8 33.019 212 121 4 287 482 516 722 1.17e-21 99.0
Msa1352560 AT4G35300.8 35.152 165 99 3 101 258 54 217 6.80e-18 87.4
Msa1352560 AT4G35300.6 33.019 212 121 4 287 482 516 722 1.17e-21 99.0
Msa1352560 AT4G35300.6 35.152 165 99 3 101 258 54 217 6.80e-18 87.4
Msa1352560 AT4G35300.11 33.019 212 121 4 287 482 516 722 1.17e-21 99.0
Msa1352560 AT4G35300.11 35.152 165 99 3 101 258 54 217 6.80e-18 87.4
Msa1352560 AT4G35300.1 33.019 212 121 4 287 482 516 722 1.17e-21 99.0
Msa1352560 AT4G35300.1 35.152 165 99 3 101 258 54 217 6.80e-18 87.4
Msa1352560 AT4G35300.10 33.019 212 121 4 287 482 516 722 1.17e-21 99.0
Msa1352560 AT4G35300.10 35.152 165 99 3 101 258 54 217 6.80e-18 87.4
Msa1352560 AT4G35300.7 33.019 212 121 4 287 482 516 722 1.17e-21 99.0
Msa1352560 AT4G35300.7 35.152 165 99 3 101 258 54 217 6.80e-18 87.4
Msa1352560 AT1G79820.5 28.011 357 186 11 146 490 87 384 2.03e-19 90.5
Msa1352560 AT1G20840.2 31.604 212 137 3 54 258 5 215 2.77e-19 91.7
Msa1352560 AT1G20840.2 32.243 214 120 4 287 482 509 715 3.11e-19 91.7
Msa1352560 AT1G20840.1 31.604 212 137 3 54 258 5 215 2.77e-19 91.7
Msa1352560 AT1G20840.1 32.243 214 120 4 287 482 509 715 3.11e-19 91.7
Msa1352560 AT3G51490.1 31.100 209 121 5 287 482 510 708 8.37e-19 90.1
Msa1352560 AT3G51490.1 33.333 165 102 3 101 258 54 217 5.15e-17 84.7
Msa1352560 AT1G54730.1 61.290 62 24 0 104 165 1 62 1.51e-17 77.4

Find 136 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACAGAAGCTAGCATTAT+TGG 0.138915 tig0012617:-6063 Msa1352560:CDS
TGGTTAACTGGTTGTGTTCT+TGG 0.201533 tig0012617:-4440 Msa1352560:CDS
TTTCCCACTTGCACCAATTT+TGG 0.205928 tig0012617:-8592 Msa1352560:five_prime_UTR
TCGCAGCTATTCTGCATTTC+CGG 0.219947 tig0012617:-7821 Msa1352560:CDS
GCTTGGTCAGGAACTTTCTT+TGG 0.221471 tig0012617:-4007 Msa1352560:intron
ATGTCATTAACTTATCTTAT+TGG 0.231801 tig0012617:-6640 Msa1352560:CDS
ATTCGTGAATTGGCGGATTT+TGG 0.244475 tig0012617:-6614 Msa1352560:CDS
TAGATTCCAATGACAACTTT+AGG 0.254435 tig0012617:-5548 Msa1352560:CDS
GAAGGAAGTCAGTCCTATTT+TGG 0.254766 tig0012617:-4987 Msa1352560:CDS
AATTGGTGCAAGTGGGAAAT+TGG 0.264374 tig0012617:+8596 None:intergenic
GCTTAGTAACCTTGGTTAAC+TGG 0.280940 tig0012617:-4452 Msa1352560:CDS
TGCAGACTGATTGTAAATAA+AGG 0.291409 tig0012617:-3826 Msa1352560:three_prime_UTR
AGGAAGCTTGAATTTCTTCT+AGG 0.298708 tig0012617:+3915 None:intergenic
CTTATCTATGACAGGGTTAT+CGG 0.312591 tig0012617:-5713 Msa1352560:intron
AGCCCTATCATTCTTCTTGC+AGG 0.314275 tig0012617:-5316 Msa1352560:intron
ACCAGCCACCTAGGAGAATC+TGG 0.321718 tig0012617:+6447 None:intergenic
TATAGCAATGGTTGCTGTTA+AGG 0.322955 tig0012617:-5677 Msa1352560:intron
GCAGAACCCTTAACGTTAAT+AGG 0.326086 tig0012617:+4480 None:intergenic
ACAGGGTTATCGGAGAGTTT+TGG 0.326679 tig0012617:-5703 Msa1352560:intron
GATATTTCCTATTAACGTTA+AGG 0.338316 tig0012617:-4487 Msa1352560:CDS
TCTTCTTTACAGCGCCTTAG+AGG 0.344154 tig0012617:-6256 Msa1352560:CDS
TAGGCATGGGAGCAATTCCC+TGG 0.346639 tig0012617:-4630 Msa1352560:CDS
CCTAGGAGAATCTGGGATAA+AGG 0.348990 tig0012617:+6455 None:intergenic
TCTGCAGTGGGAACTTGTTT+AGG 0.349129 tig0012617:-5351 Msa1352560:CDS
CTACGGCTGCGCTGGCTGAC+TGG 0.355238 tig0012617:+8658 None:intergenic
AAATTAAAAGAGCTAGTAAA+TGG 0.356511 tig0012617:+8514 None:intergenic
ACACCAACAAGCGCCAAAAT+AGG 0.356691 tig0012617:+4974 None:intergenic
CATCAGCATTCTTCCCTCTA+AGG 0.356717 tig0012617:+6242 None:intergenic
CTTCATTGAATTTGAATTCA+AGG 0.361984 tig0012617:+3895 None:intergenic
CTCATGACTTGGAGTTCAAC+AGG 0.367309 tig0012617:-4393 Msa1352560:intron
GAACCTGCAAGAAGAATGAT+AGG 0.373125 tig0012617:+5313 None:intergenic
ATTATATACTCTGATTTCAT+TGG 0.373273 tig0012617:+6207 None:intergenic
ATCTACACATTCGTTGAAAT+AGG 0.373493 tig0012617:-3680 Msa1352560:three_prime_UTR
TTATTGGTGCATTCGTGAAT+TGG 0.377156 tig0012617:-6624 Msa1352560:CDS
ATATTTCCTATTAACGTTAA+GGG 0.381371 tig0012617:-4486 Msa1352560:CDS
TTATGCAGGACATACATAAA+TGG 0.381934 tig0012617:-5009 Msa1352560:intron
TTGTTTGTGTTGTTGATGAT+TGG 0.388354 tig0012617:+8352 None:intergenic
ATCGCATTCTACGGCTGCGC+TGG 0.407410 tig0012617:+8650 None:intergenic
GGGATTCACCGCAGTTCATC+AGG 0.417828 tig0012617:-6808 Msa1352560:intron
TTTGGCGCTTGTTGGTGTAC+TGG 0.422650 tig0012617:-4969 Msa1352560:intron
CAACAGTTTGGAGGGATTAA+CGG 0.422666 tig0012617:-5888 Msa1352560:CDS
TTCTTCTAGGGTACGCCCCT+TGG 0.424419 tig0012617:+3928 None:intergenic
CTAGGAGAATCTGGGATAAA+GGG 0.424434 tig0012617:+6456 None:intergenic
AATACTCCTAAAGTTGTCAT+TGG 0.427438 tig0012617:+5542 None:intergenic
GTTATTTCTGCTATATAAAC+CGG 0.437448 tig0012617:+6849 None:intergenic
TGATCTTGTGCAGGCAAAGA+TGG 0.438959 tig0012617:-6299 Msa1352560:intron
ATAACGCCAAAGAATCTTAG+AGG 0.443505 tig0012617:-6831 Msa1352560:CDS
TAGCTTCTGTTTGTTGCTGA+AGG 0.445371 tig0012617:+6073 None:intergenic
TTTGGATTCGCTGCCATATG+TGG 0.445434 tig0012617:-3989 Msa1352560:CDS
AGGGTACGCCCCTTGGTCTC+AGG 0.448082 tig0012617:+3935 None:intergenic
ATGGTGGTGTTGACCAAAAT+TGG 0.452796 tig0012617:+8579 None:intergenic
TACTTTGCTTAGGTAGGACT+CGG 0.456160 tig0012617:-5924 Msa1352560:intron
GTGGTAAGTGTGAGAGTAGG+AGG 0.461073 tig0012617:+8314 None:intergenic
TTCGGTTCAATATTGACCAT+TGG 0.469336 tig0012617:-8007 Msa1352560:CDS
TTGACCATTGGAGCAATGAT+TGG 0.470163 tig0012617:-7995 Msa1352560:CDS
CTTCAATAGAGTCGTTGAAA+AGG 0.471548 tig0012617:+3496 None:intergenic
CCTCAATCTTACTGTTGCAC+AGG 0.472592 tig0012617:-8128 Msa1352560:intron
AATTCTATATTTATATCAGC+TGG 0.473324 tig0012617:-5849 Msa1352560:intron
CCCAGATTCTCCTAGGTGGC+TGG 0.473747 tig0012617:-6448 Msa1352560:intron
GTATTTGTTTAAAGGATGCT+TGG 0.474738 tig0012617:-7027 Msa1352560:intron
GGCAAAGATGGGTCGCTTGA+AGG 0.478645 tig0012617:-6287 Msa1352560:CDS
AGCTTCTGTTTGTTGCTGAA+GGG 0.478927 tig0012617:+6074 None:intergenic
GCAGACCTTTGCGATTGTAA+TGG 0.481664 tig0012617:+7790 None:intergenic
ATTAACGTTAAGGGTTCTGC+TGG 0.481935 tig0012617:-4477 Msa1352560:CDS
GAAAGCAGGAAAATTGCATT+AGG 0.484162 tig0012617:-3770 Msa1352560:three_prime_UTR
GACAGCTAATGATCTGTTGT+GGG 0.484232 tig0012617:-6663 Msa1352560:intron
GTTAATGGCCAGGTATATGT+TGG 0.484675 tig0012617:-4664 Msa1352560:intron
TGCTGGAAGCTTAGTAACCT+TGG 0.485413 tig0012617:-4460 Msa1352560:CDS
CCTTTATCCCAGATTCTCCT+AGG 0.486068 tig0012617:-6455 Msa1352560:CDS
TTGATGATACTACAACAGTT+TGG 0.487126 tig0012617:-5900 Msa1352560:CDS
AAAACTGGTTCCTGAGACCA+AGG 0.489516 tig0012617:-3945 Msa1352560:CDS
AGTGTGAGAGTAGGAGGTGA+AGG 0.490349 tig0012617:+8320 None:intergenic
GGCTGCGCTGGCTGACTGGA+TGG 0.494885 tig0012617:+8662 None:intergenic
TCATGATTCTAGCTTGAGTA+GGG 0.497312 tig0012617:+8155 None:intergenic
GATTGTAATGGCAAGCCATC+CGG 0.497527 tig0012617:+7802 None:intergenic
GGAAGCTTGAATTTCTTCTA+GGG 0.498017 tig0012617:+3916 None:intergenic
AAACTTATTACCAGTAAAAG+TGG 0.501367 tig0012617:+5494 None:intergenic
TAAAACAGTGAAGCCACATA+TGG 0.501577 tig0012617:+3976 None:intergenic
ATGATTGGTGCCATTGTTAG+TGG 0.503985 tig0012617:-7980 Msa1352560:CDS
TTTGTTTAAAGGATGCTTGG+TGG 0.520168 tig0012617:-7024 Msa1352560:intron
ATGATACTACAACAGTTTGG+AGG 0.521727 tig0012617:-5897 Msa1352560:CDS
AGCTATTCTGCATTTCCGGA+TGG 0.524694 tig0012617:-7817 Msa1352560:CDS
GGATCTTACTCGCTAGGCAT+GGG 0.528311 tig0012617:-4643 Msa1352560:CDS
TATGTTGGATCTTACTCGCT+AGG 0.536109 tig0012617:-4649 Msa1352560:CDS
CTCAGAAGTTGTACAAGACA+TGG 0.536926 tig0012617:+6483 None:intergenic
TGATACTACAACAGTTTGGA+GGG 0.537332 tig0012617:-5896 Msa1352560:CDS
TTGGTGCATTCGTGAATTGG+CGG 0.542017 tig0012617:-6621 Msa1352560:CDS
CTGTTGGTAGGATGTGGAAT+TGG 0.542973 tig0012617:-6986 Msa1352560:CDS
TGTTATGCTGAGCAGGCCAT+GGG 0.544608 tig0012617:-7848 Msa1352560:intron
AGGGTGGTAAGTGTGAGAGT+AGG 0.547066 tig0012617:+8311 None:intergenic
GAATGCTGATGTTTATAAAG+AGG 0.549236 tig0012617:-6230 Msa1352560:CDS
AATTGGCCTGCTATCTTATG+TGG 0.552218 tig0012617:-6969 Msa1352560:intron
TGGATCTTACTCGCTAGGCA+TGG 0.552527 tig0012617:-4644 Msa1352560:CDS
GCTTTACATTGGAAGACTGT+TGG 0.555098 tig0012617:-7002 Msa1352560:CDS
GATGCTTGGTGGCTTTACAT+TGG 0.556159 tig0012617:-7013 Msa1352560:CDS
CCAGCCACCTAGGAGAATCT+GGG 0.560891 tig0012617:+6448 None:intergenic
GGCACCAATCATTGCTCCAA+TGG 0.561415 tig0012617:+7991 None:intergenic
GAATATTGAAAATAAATGAA+TGG 0.563471 tig0012617:+8560 None:intergenic
AAATTACCACATAAGATAGC+AGG 0.564200 tig0012617:+6963 None:intergenic
TGCTATTGTACCACTAACAA+TGG 0.570005 tig0012617:+7970 None:intergenic
TGACAGCTAATGATCTGTTG+TGG 0.570658 tig0012617:-6664 Msa1352560:intron
TACTTAACAGTTGTCTGCAG+TGG 0.572600 tig0012617:-5364 Msa1352560:intron
CTTCTTTACAGCGCCTTAGA+GGG 0.575020 tig0012617:-6255 Msa1352560:CDS
ATCATGATTCTAGCTTGAGT+AGG 0.576117 tig0012617:+8154 None:intergenic
TAACGCCAAAGAATCTTAGA+GGG 0.580791 tig0012617:-6830 Msa1352560:CDS
ACATTGCATATCGCATTCTA+CGG 0.584991 tig0012617:+8641 None:intergenic
AAACAAATCAGTAATCATCA+TGG 0.586036 tig0012617:-8480 Msa1352560:exon
TTGACCAAAATTGGTGCAAG+TGG 0.592921 tig0012617:+8588 None:intergenic
TACCTCAGACATTATAACCC+AGG 0.595151 tig0012617:+4612 None:intergenic
CAACAACTCACCAGCCACCT+AGG 0.599750 tig0012617:+6438 None:intergenic
GATCTTGTGCAGGCAAAGAT+GGG 0.601236 tig0012617:-6298 Msa1352560:intron
GGAAGACTGTTGGTAGGATG+TGG 0.603779 tig0012617:-6992 Msa1352560:CDS
TACATTGGAAGACTGTTGGT+AGG 0.609151 tig0012617:-6998 Msa1352560:CDS
ACTTAACAGTTGTCTGCAGT+GGG 0.610138 tig0012617:-5363 Msa1352560:intron
GCAGGACATACATAAATGGA+AGG 0.614430 tig0012617:-5005 Msa1352560:intron
ACCTCAGACATTATAACCCA+GGG 0.614558 tig0012617:+4613 None:intergenic
ACGTTACCTCGGAAAAGAAG+AGG 0.615557 tig0012617:+8422 None:intergenic
ATTGTGATTCAACGTTACCT+CGG 0.621262 tig0012617:+8411 None:intergenic
TTATCCCAGATTCTCCTAGG+TGG 0.635109 tig0012617:-6452 Msa1352560:CDS
GAATAGCTGCGAGAATCCCA+TGG 0.635839 tig0012617:+7832 None:intergenic
AGGCATGGGAGCAATTCCCT+GGG 0.644562 tig0012617:-4629 Msa1352560:CDS
TCCCTGGGTTATAATGTCTG+AGG 0.650945 tig0012617:-4614 Msa1352560:intron
TATTGAAAATAAATGAATGG+TGG 0.651906 tig0012617:+8563 None:intergenic
GCTTGCCATTACAATCGCAA+AGG 0.653984 tig0012617:-7795 Msa1352560:intron
AACTGGTTCCTGAGACCAAG+GGG 0.654505 tig0012617:-3943 Msa1352560:CDS
CCTGTGCAACAGTAAGATTG+AGG 0.658261 tig0012617:+8128 None:intergenic
CATGATTCTAGCTTGAGTAG+GGG 0.669832 tig0012617:+8156 None:intergenic
AACGCCAAAGAATCTTAGAG+GGG 0.669984 tig0012617:-6829 Msa1352560:CDS
ACGCCAAAGAATCTTAGAGG+GGG 0.670184 tig0012617:-6828 Msa1352560:CDS
AAACTGGTTCCTGAGACCAA+GGG 0.675734 tig0012617:-3944 Msa1352560:CDS
AACCTGCAAGAAGAATGATA+GGG 0.679626 tig0012617:+5314 None:intergenic
TGACCAAAATTGGTGCAAGT+GGG 0.690728 tig0012617:+8589 None:intergenic
AGAACACAACCAGTTAACCA+AGG 0.702029 tig0012617:+4443 None:intergenic
AGAAGAATGATAGGGCTGCG+AGG 0.713518 tig0012617:+5322 None:intergenic
GGTACAATAGCAGATTACGC+TGG 0.729619 tig0012617:-7959 Msa1352560:CDS
TTGCTTCACCTGATGAACTG+CGG 0.737737 tig0012617:+6800 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATCAATACATATATTT+AGG + tig0012617:7901-7920 None:intergenic 10.0%
!! GAATATTGAAAATAAATGAA+TGG + tig0012617:3595-3614 None:intergenic 15.0%
!!! TTTATGTAGTTTTCAATTTT+CGG - tig0012617:4127-4146 Msa1352560:intron 15.0%
!!! TTTTTCAGCTTAATTAAATT+TGG - tig0012617:4273-4292 Msa1352560:intron 15.0%
!! TTTATATTAATTCCAAGAAA+TGG - tig0012617:4597-4616 Msa1352560:intron 15.0%
!! TTATATTAATTCCAAGAAAT+GGG - tig0012617:4598-4617 Msa1352560:intron 15.0%
!! TACTTTAAATAGTTAATAGT+TGG + tig0012617:4656-4675 None:intergenic 15.0%
!!! ATCATTTTTATGAAAATACA+AGG + tig0012617:7420-7439 None:intergenic 15.0%
!! AATTACATTTATTTGTCAAT+AGG + tig0012617:7454-7473 None:intergenic 15.0%
!! ACATATAAAAGAAATGAAAT+TGG - tig0012617:8110-8129 Msa1352560:intron 15.0%
!! TATTGAAAATAAATGAATGG+TGG + tig0012617:3592-3611 None:intergenic 20.0%
!! AAATTAAAAGAGCTAGTAAA+TGG + tig0012617:3641-3660 None:intergenic 20.0%
!! AAGTTAAGTTAGAAAGAAAA+TGG + tig0012617:3916-3935 None:intergenic 20.0%
!! AAAAGTAGAAATGAAAAGAA+AGG + tig0012617:4069-4088 None:intergenic 20.0%
!! TATATTAATTCCAAGAAATG+GGG - tig0012617:4599-4618 Msa1352560:intron 20.0%
!! AGTATTCATTTGTATTCTTT+CGG + tig0012617:5264-5283 None:intergenic 20.0%
!! ATGTCATTAACTTATCTTAT+TGG - tig0012617:5512-5531 Msa1352560:CDS 20.0%
!! ATTATATACTCTGATTTCAT+TGG + tig0012617:5948-5967 None:intergenic 20.0%
!!! TGAATCATACTTTTATTTGT+AGG - tig0012617:6043-6062 Msa1352560:CDS 20.0%
!! AATTCTATATTTATATCAGC+TGG - tig0012617:6303-6322 Msa1352560:intron 20.0%
!! ATTATATGACAAAGAAAAGA+AGG - tig0012617:6362-6381 Msa1352560:intron 20.0%
!! AAAATTTCTTATCTATGACA+GGG - tig0012617:6432-6451 Msa1352560:intron 20.0%
!! AATTGTTTGAAGAGAATTAA+GGG + tig0012617:6568-6587 None:intergenic 20.0%
!! AAATTGTTTGAAGAGAATTA+AGG + tig0012617:6569-6588 None:intergenic 20.0%
!!! TGTTAAGTAGTCAAAATTTT+GGG + tig0012617:6777-6796 None:intergenic 20.0%
!!! ATTAAGTAGAGCATATATTT+TGG + tig0012617:6873-6892 None:intergenic 20.0%
!! TTTCAAATGAATTACTAGTA+AGG - tig0012617:6896-6915 Msa1352560:intron 20.0%
!!! AATCTCATAAATTTTAAGTC+CGG - tig0012617:7258-7277 Msa1352560:intron 20.0%
!! TTCATAAAAATGATTTAAGC+TGG - tig0012617:7426-7445 Msa1352560:intron 20.0%
!!! TTGCCTTTTAATTTTGTTAA+TGG - tig0012617:7473-7492 Msa1352560:intron 20.0%
!!! ATATAAATTTTAACGAGTTC+CGG + tig0012617:7582-7601 None:intergenic 20.0%
!! ATATTTCCTATTAACGTTAA+GGG - tig0012617:7666-7685 Msa1352560:intron 20.0%
!!! AATTTAACCTTTTTATTGTG+TGG - tig0012617:8086-8105 Msa1352560:intron 20.0%
!!! TGTTTTTCTGGAATTTTATT+TGG - tig0012617:8519-8538 Msa1352560:five_prime_UTR 20.0%
! AAACAAATCAGTAATCATCA+TGG - tig0012617:3672-3691 Msa1352560:three_prime_UTR 25.0%
!!! AATTAACTAGTCTTTTAGGT+TGG + tig0012617:4458-4477 None:intergenic 25.0%
!! ACCTAAAAGACTAGTTAATT+AGG - tig0012617:4458-4477 Msa1352560:CDS 25.0%
!!! ACCTAATTAACTAGTCTTTT+AGG + tig0012617:4462-4481 None:intergenic 25.0%
! ATACATAAGAAAGCTTAATG+TGG + tig0012617:4508-4527 None:intergenic 25.0%
!!! TATTGGTTTCAGAATGTTTT+AGG + tig0012617:4995-5014 None:intergenic 25.0%
! ATAAAGTTGGCTACTAAATA+TGG - tig0012617:5016-5035 Msa1352560:intron 25.0%
!!! GTTATTTCTGCTATATAAAC+CGG + tig0012617:5306-5325 None:intergenic 25.0%
!!! AGTTCACTCTTTTTTTTTTG+TGG - tig0012617:5397-5416 Msa1352560:intron 25.0%
! ATGCTACTATTGTGTTAAAA+AGG - tig0012617:5986-6005 Msa1352560:intron 25.0%
! TACTATTGTGTTAAAAAGGA+AGG - tig0012617:5990-6009 Msa1352560:intron 25.0%
!! AATATTCAGTTACTTTGCTT+AGG - tig0012617:6218-6237 Msa1352560:CDS 25.0%
! CAAAATTTCTTATCTATGAC+AGG - tig0012617:6431-6450 Msa1352560:intron 25.0%
!!! AACTTTAGGAGTATTTTTGA+TGG - tig0012617:6618-6637 Msa1352560:CDS 25.0%
!!! GTATTTTTGATGGATAAATC+TGG - tig0012617:6628-6647 Msa1352560:CDS 25.0%
! AAACTTATTACCAGTAAAAG+TGG + tig0012617:6661-6680 None:intergenic 25.0%
!! CTGTTAAGTAGTCAAAATTT+TGG + tig0012617:6778-6797 None:intergenic 25.0%
!! ACTTATTTGAGATTATCCAT+TGG - tig0012617:6933-6952 Msa1352560:intron 25.0%
!! TTTACTCCATTATTTAGAAC+CGG + tig0012617:7280-7299 None:intergenic 25.0%
! TGGCCATTAACAAAATTAAA+AGG + tig0012617:7479-7498 None:intergenic 25.0%
!!! TTTTAATTTTGTTAATGGCC+AGG - tig0012617:7478-7497 Msa1352560:intron 25.0%
! GATATTTCCTATTAACGTTA+AGG - tig0012617:7665-7684 Msa1352560:intron 25.0%
!!! GTTTTAATCTTCATATTCCT+CGG - tig0012617:7789-7808 Msa1352560:intron 25.0%
!! CCTTATGCTTTATCTTTTTA+GGG + tig0012617:7838-7857 None:intergenic 25.0%
!! ACCTTATGCTTTATCTTTTT+AGG + tig0012617:7839-7858 None:intergenic 25.0%
! ATATGTACCACACAATAAAA+AGG + tig0012617:8096-8115 None:intergenic 25.0%
! ATTGGTTATTATGTTATGCT+TGG - tig0012617:8128-8147 Msa1352560:intron 25.0%
! CTTCATTGAATTTGAATTCA+AGG + tig0012617:8260-8279 None:intergenic 25.0%
!!! ATTTTTGGAAGCTTCTTAAT+GGG + tig0012617:8306-8325 None:intergenic 25.0%
!!! AATTTTTGGAAGCTTCTTAA+TGG + tig0012617:8307-8326 None:intergenic 25.0%
!!! TGGAATTTTATTTGGAGTAA+CGG - tig0012617:8527-8546 Msa1352560:five_prime_UTR 25.0%
!! TTGTTTGTGTTGTTGATGAT+TGG + tig0012617:3803-3822 None:intergenic 30.0%
!!! GTTTTTGGTTCTTACGTTTT+TGG - tig0012617:3871-3890 Msa1352560:exon 30.0%
! AAGAGTGAGTTATGATAATG+TGG + tig0012617:4101-4120 None:intergenic 30.0%
GGTCATAACATAAAACTACT+GGG + tig0012617:4417-4436 None:intergenic 30.0%
AGGTCATAACATAAAACTAC+TGG + tig0012617:4418-4437 None:intergenic 30.0%
TGTATAACAACAAATCTCAG+GGG + tig0012617:4717-4736 None:intergenic 30.0%
GTGTATAACAACAAATCTCA+GGG + tig0012617:4718-4737 None:intergenic 30.0%
TGTGTATAACAACAAATCTC+AGG + tig0012617:4719-4738 None:intergenic 30.0%
!!! CACACACATACTCTATTTTT+TGG - tig0012617:4735-4754 Msa1352560:intron 30.0%
! TGCCATTTAAACAGAACTAA+GGG + tig0012617:4802-4821 None:intergenic 30.0%
GATCAACAACAAAGCTTATT+TGG - tig0012617:4907-4926 Msa1352560:intron 30.0%
CTGAAACCAATAGATAAAGT+TGG - tig0012617:5003-5022 Msa1352560:CDS 30.0%
TAGTAGCCAACTTTATCTAT+TGG + tig0012617:5012-5031 None:intergenic 30.0%
CTTTAAACAAATACCACCAA+AGG + tig0012617:5119-5138 None:intergenic 30.0%
! CTTTGGTGGTATTTGTTTAA+AGG - tig0012617:5117-5136 Msa1352560:intron 30.0%
GTATTTGTTTAAAGGATGCT+TGG - tig0012617:5125-5144 Msa1352560:intron 30.0%
AAATTACCACATAAGATAGC+AGG + tig0012617:5192-5211 None:intergenic 30.0%
ATACAAATGAATACTTCCCT+TGG - tig0012617:5269-5288 Msa1352560:intron 30.0%
GCACATATCAAATCTCTATT+TGG - tig0012617:5457-5476 Msa1352560:intron 30.0%
!! ATCGTTTTTGTCTTTATCTC+AGG - tig0012617:5639-5658 Msa1352560:intron 30.0%
AAAACTTTAGTTGCTTGTGT+AGG + tig0012617:5778-5797 None:intergenic 30.0%
GAATGCTGATGTTTATAAAG+AGG - tig0012617:5922-5941 Msa1352560:intron 30.0%
! TTGATGATACTACAACAGTT+TGG - tig0012617:6252-6271 Msa1352560:CDS 30.0%
TCATCGTCTTATGCAAAATT+AGG + tig0012617:6540-6559 None:intergenic 30.0%
TAGATTCCAATGACAACTTT+AGG - tig0012617:6604-6623 Msa1352560:intron 30.0%
AATACTCCTAAAGTTGTCAT+TGG + tig0012617:6613-6632 None:intergenic 30.0%
TAAAACGCAGCAAAATAAGA+AGG + tig0012617:6695-6714 None:intergenic 30.0%
TAGTTACACTTATCTTATGC+AGG - tig0012617:7129-7148 Msa1352560:intron 30.0%
TTATGCAGGACATACATAAA+TGG - tig0012617:7143-7162 Msa1352560:intron 30.0%
!! TTAAGTCCGGTTCTAAATAA+TGG - tig0012617:7271-7290 Msa1352560:intron 30.0%
TGAAAGAATCAAAGAGAACA+AGG + tig0012617:7393-7412 None:intergenic 30.0%
TGTTCTCTTTGATTCTTTCA+CGG - tig0012617:7393-7412 Msa1352560:intron 30.0%
!!! CTTTTAACTTTCTCATGACT+TGG - tig0012617:7748-7767 Msa1352560:intron 30.0%
!! TTTTTAGGGAATGAATGAGT+AGG + tig0012617:7824-7843 None:intergenic 30.0%
CCCTAAAAAGATAAAGCATA+AGG - tig0012617:7835-7854 Msa1352560:CDS 30.0%
AGAATTTAATTACCGTGCAA+TGG + tig0012617:7951-7970 None:intergenic 30.0%
TTATTATGTTATGCTTGGTC+AGG - tig0012617:8133-8152 Msa1352560:CDS 30.0%
!! TGTTTTATTCGTAGCAAAAC+TGG - tig0012617:8192-8211 Msa1352560:intron 30.0%
! TACAATCAGTCTGCAATTTT+TGG + tig0012617:8321-8340 None:intergenic 30.0%
TGCAGACTGATTGTAAATAA+AGG - tig0012617:8326-8345 Msa1352560:CDS 30.0%
ATCATTGCCCATAAAAAGAT+GGG - tig0012617:8360-8379 Msa1352560:CDS 30.0%
ATCTACACATTCGTTGAAAT+AGG - tig0012617:8472-8491 Msa1352560:exon 30.0%
!! AAAAACAACTGATGATGGTT+TGG + tig0012617:8506-8525 None:intergenic 30.0%
!! GGAATTTTATTTGGAGTAAC+GGG - tig0012617:8528-8547 Msa1352560:five_prime_UTR 30.0%
ACATTGCATATCGCATTCTA+CGG + tig0012617:3514-3533 None:intergenic 35.0%
ATTGTGATTCAACGTTACCT+CGG + tig0012617:3744-3763 None:intergenic 35.0%
! TCATCGCTCATTTTACAGAT+CGG - tig0012617:3965-3984 Msa1352560:CDS 35.0%
!! TCATGATTCTAGCTTGAGTA+GGG + tig0012617:4000-4019 None:intergenic 35.0%
!! ATCATGATTCTAGCTTGAGT+AGG + tig0012617:4001-4020 None:intergenic 35.0%
TTCGGTTCAATATTGACCAT+TGG - tig0012617:4145-4164 Msa1352560:intron 35.0%
TGCTATTGTACCACTAACAA+TGG + tig0012617:4185-4204 None:intergenic 35.0%
ACTGGGATTTGTGGATAAAA+TGG + tig0012617:4400-4419 None:intergenic 35.0%
CATAAAACTACTGGGATTTG+TGG + tig0012617:4409-4428 None:intergenic 35.0%
TAATTCCAAGAAATGGGGAA+AGG - tig0012617:4604-4623 Msa1352560:intron 35.0%
TTTAAACAGAACTAAGGGGA+GGG + tig0012617:4797-4816 None:intergenic 35.0%
ATTTAAACAGAACTAAGGGG+AGG + tig0012617:4798-4817 None:intergenic 35.0%
!! TCCCCTTAGTTCTGTTTAAA+TGG - tig0012617:4797-4816 Msa1352560:intron 35.0%
GCCATTTAAACAGAACTAAG+GGG + tig0012617:4801-4820 None:intergenic 35.0%
!! GTGCCATTTAAACAGAACTA+AGG + tig0012617:4803-4822 None:intergenic 35.0%
!! ATAAGCTTTGTTGTTGATCG+AGG + tig0012617:4906-4925 None:intergenic 35.0%
GCTGATATCTATCTAACCTT+TGG - tig0012617:5100-5119 Msa1352560:intron 35.0%
GATATCTATCTAACCTTTGG+TGG - tig0012617:5103-5122 Msa1352560:intron 35.0%
TTTGTTTAAAGGATGCTTGG+TGG - tig0012617:5128-5147 Msa1352560:intron 35.0%
! AATACTTCCCTTGGTGTAAT+AGG - tig0012617:5278-5297 Msa1352560:intron 35.0%
ATAACGCCAAAGAATCTTAG+AGG - tig0012617:5321-5340 Msa1352560:CDS 35.0%
TAACGCCAAAGAATCTTAGA+GGG - tig0012617:5322-5341 Msa1352560:CDS 35.0%
TATGTCGTCATATCACTTGT+AGG - tig0012617:5435-5454 Msa1352560:intron 35.0%
TTATTGGTGCATTCGTGAAT+TGG - tig0012617:5528-5547 Msa1352560:CDS 35.0%
ATAGGTAACATTCTTCTTCC+TGG - tig0012617:5566-5585 Msa1352560:intron 35.0%
! TGTTTTGTGAAAAGAACACC+AGG + tig0012617:5587-5606 None:intergenic 35.0%
!! TTGTTGACGAGTTGATTGTT+TGG - tig0012617:5731-5750 Msa1352560:intron 35.0%
!! TGTTGACGAGTTGATTGTTT+GGG - tig0012617:5732-5751 Msa1352560:intron 35.0%
TTGTTTGGGGATATATGTGT+TGG - tig0012617:5746-5765 Msa1352560:intron 35.0%
CAAACAGAAGCTAGCATTAT+TGG - tig0012617:6089-6108 Msa1352560:CDS 35.0%
CTGCATGAATAGGACTAATT+CGG + tig0012617:6158-6177 None:intergenic 35.0%
AGAAGATATGCTGCATGAAT+AGG + tig0012617:6168-6187 None:intergenic 35.0%
! TTCAGTTACTTTGCTTAGGT+AGG - tig0012617:6222-6241 Msa1352560:CDS 35.0%
ATGATACTACAACAGTTTGG+AGG - tig0012617:6255-6274 Msa1352560:CDS 35.0%
TGATACTACAACAGTTTGGA+GGG - tig0012617:6256-6275 Msa1352560:CDS 35.0%
CTTATCTATGACAGGGTTAT+CGG - tig0012617:6439-6458 Msa1352560:intron 35.0%
!!! GAGTTTTGGAACTATAGCAA+TGG - tig0012617:6463-6482 Msa1352560:CDS 35.0%
! TATAGCAATGGTTGCTGTTA+AGG - tig0012617:6475-6494 Msa1352560:CDS 35.0%
!!! CTTATTTTGCTGCGTTTTAC+TGG - tig0012617:6696-6715 Msa1352560:intron 35.0%
CAAAACGCAGCAAAATAAGA+AGG + tig0012617:6743-6762 None:intergenic 35.0%
AACCTGCAAGAAGAATGATA+GGG + tig0012617:6841-6860 None:intergenic 35.0%
! ATGTTTTCATAAGCTGTCGT+AGG + tig0012617:7002-7021 None:intergenic 35.0%
TCCCCATATACGTTGAATTT+CGG - tig0012617:7223-7242 Msa1352560:intron 35.0%
TCCGAAATTCAACGTATATG+GGG + tig0012617:7227-7246 None:intergenic 35.0%
GTCCGAAATTCAACGTATAT+GGG + tig0012617:7228-7247 None:intergenic 35.0%
AGTCCGAAATTCAACGTATA+TGG + tig0012617:7229-7248 None:intergenic 35.0%
GTTCTCTTTGATTCTTTCAC+GGG - tig0012617:7394-7413 Msa1352560:intron 35.0%
AGTAAGATCCAACATATACC+TGG + tig0012617:7499-7518 None:intergenic 35.0%
GTAGCTTCATCTTAATATGC+CGG - tig0012617:7560-7579 Msa1352560:intron 35.0%
CCATTTATCATATCATGCTG+AGG + tig0012617:7628-7647 None:intergenic 35.0%
CCTCAGCATGATATGATAAA+TGG - tig0012617:7625-7644 Msa1352560:intron 35.0%
TAAAACAGTGAAGCCACATA+TGG + tig0012617:8179-8198 None:intergenic 35.0%
GGAAGCTTGAATTTCTTCTA+GGG + tig0012617:8239-8258 None:intergenic 35.0%
AGGAAGCTTGAATTTCTTCT+AGG + tig0012617:8240-8259 None:intergenic 35.0%
!! CTTAATGGGTGTTTTGTACA+AGG + tig0012617:8292-8311 None:intergenic 35.0%
CATCATTGCCCATAAAAAGA+TGG - tig0012617:8359-8378 Msa1352560:CDS 35.0%
! CTGCTTTCCCATCTTTTTAT+GGG + tig0012617:8370-8389 None:intergenic 35.0%
GAAAGCAGGAAAATTGCATT+AGG - tig0012617:8382-8401 Msa1352560:CDS 35.0%
!!! ACCATCATCAGTTGTTTTTC+TGG - tig0012617:8507-8526 Msa1352560:five_prime_UTR 35.0%
TCCAGAAAAACAACTGATGA+TGG + tig0012617:8511-8530 None:intergenic 35.0%
CTTCAATAGAGTCGTTGAAA+AGG + tig0012617:8659-8678 None:intergenic 35.0%
AATTGGTGCAAGTGGGAAAT+TGG + tig0012617:3559-3578 None:intergenic 40.0%
! TTTCCCACTTGCACCAATTT+TGG - tig0012617:3560-3579 Msa1352560:three_prime_UTR 40.0%
TGACCAAAATTGGTGCAAGT+GGG + tig0012617:3566-3585 None:intergenic 40.0%
TTGACCAAAATTGGTGCAAG+TGG + tig0012617:3567-3586 None:intergenic 40.0%
!! ATGGTGGTGTTGACCAAAAT+TGG + tig0012617:3576-3595 None:intergenic 40.0%
AGAACCAAAAACAGCGACAA+GGG + tig0012617:3863-3882 None:intergenic 40.0%
AAGAACCAAAAACAGCGACA+AGG + tig0012617:3864-3883 None:intergenic 40.0%
!! CATGATTCTAGCTTGAGTAG+GGG + tig0012617:3999-4018 None:intergenic 40.0%
TTGACCATTGGAGCAATGAT+TGG - tig0012617:4157-4176 Msa1352560:intron 40.0%
!! ATGATTGGTGCCATTGTTAG+TGG - tig0012617:4172-4191 Msa1352560:intron 40.0%
! CATTTTGTGTTATGCTGAGC+AGG - tig0012617:4297-4316 Msa1352560:intron 40.0%
TGTTATGACCTACACCCATA+AGG - tig0012617:4427-4446 Msa1352560:CDS 40.0%
!! TTAGGTTGGACTCTCCTTAT+GGG + tig0012617:4444-4463 None:intergenic 40.0%
!! TTTAGGTTGGACTCTCCTTA+TGG + tig0012617:4445-4464 None:intergenic 40.0%
AAATGGGGAAAGGACTTCTA+TGG - tig0012617:4614-4633 Msa1352560:intron 40.0%
TTAAACAGAACTAAGGGGAG+GGG + tig0012617:4796-4815 None:intergenic 40.0%
CCTCAATTACACTCAGTGAA+GGG + tig0012617:4825-4844 None:intergenic 40.0%
CCTTCACTGAGTGTAATTGA+GGG - tig0012617:4823-4842 Msa1352560:intron 40.0%
CTTCACTGAGTGTAATTGAG+GGG - tig0012617:4824-4843 Msa1352560:intron 40.0%
GCTTTACATTGGAAGACTGT+TGG - tig0012617:5150-5169 Msa1352560:intron 40.0%
TACATTGGAAGACTGTTGGT+AGG - tig0012617:5154-5173 Msa1352560:intron 40.0%
! AATTGGCCTGCTATCTTATG+TGG - tig0012617:5183-5202 Msa1352560:intron 40.0%
AACGCCAAAGAATCTTAGAG+GGG - tig0012617:5323-5342 Msa1352560:CDS 40.0%
!! AATCCCCCTCTAAGATTCTT+TGG + tig0012617:5330-5349 None:intergenic 40.0%
TGACAGCTAATGATCTGTTG+TGG - tig0012617:5488-5507 Msa1352560:intron 40.0%
GACAGCTAATGATCTGTTGT+GGG - tig0012617:5489-5508 Msa1352560:intron 40.0%
!!! ATTCGTGAATTGGCGGATTT+TGG - tig0012617:5538-5557 Msa1352560:CDS 40.0%
!!! TGGCGGATTTTGGCTATAAT+AGG - tig0012617:5548-5567 Msa1352560:CDS 40.0%
CTCAGAAGTTGTACAAGACA+TGG + tig0012617:5672-5691 None:intergenic 40.0%
! CTAGGAGAATCTGGGATAAA+GGG + tig0012617:5699-5718 None:intergenic 40.0%
!! GTTGACGAGTTGATTGTTTG+GGG - tig0012617:5733-5752 Msa1352560:intron 40.0%
TGATACTTGTGATCTTGTGC+AGG - tig0012617:5844-5863 Msa1352560:intron 40.0%
! AGCTTCTGTTTGTTGCTGAA+GGG + tig0012617:6081-6100 None:intergenic 40.0%
! TAGCTTCTGTTTGTTGCTGA+AGG + tig0012617:6082-6101 None:intergenic 40.0%
TACTTTGCTTAGGTAGGACT+CGG - tig0012617:6228-6247 Msa1352560:CDS 40.0%
CAACAGTTTGGAGGGATTAA+CGG - tig0012617:6264-6283 Msa1352560:CDS 40.0%
TACTTAACAGTTGTCTGCAG+TGG - tig0012617:6788-6807 Msa1352560:intron 40.0%
ACTTAACAGTTGTCTGCAGT+GGG - tig0012617:6789-6808 Msa1352560:intron 40.0%
GAACCTGCAAGAAGAATGAT+AGG + tig0012617:6842-6861 None:intergenic 40.0%
AAGTACTTGCGAGACTGTTA+TGG - tig0012617:6959-6978 Msa1352560:intron 40.0%
GCAGGACATACATAAATGGA+AGG - tig0012617:7147-7166 Msa1352560:intron 40.0%
! GAAGGAAGTCAGTCCTATTT+TGG - tig0012617:7165-7184 Msa1352560:intron 40.0%
GTTAATGGCCAGGTATATGT+TGG - tig0012617:7488-7507 Msa1352560:intron 40.0%
TATGTTGGATCTTACTCGCT+AGG - tig0012617:7503-7522 Msa1352560:intron 40.0%
ACCTCAGACATTATAACCCA+GGG + tig0012617:7542-7561 None:intergenic 40.0%
TACCTCAGACATTATAACCC+AGG + tig0012617:7543-7562 None:intergenic 40.0%
GCAGAACCCTTAACGTTAAT+AGG + tig0012617:7675-7694 None:intergenic 40.0%
ATTAACGTTAAGGGTTCTGC+TGG - tig0012617:7675-7694 Msa1352560:intron 40.0%
GCTTAGTAACCTTGGTTAAC+TGG - tig0012617:7700-7719 Msa1352560:intron 40.0%
AGAACACAACCAGTTAACCA+AGG + tig0012617:7712-7731 None:intergenic 40.0%
TGGTTAACTGGTTGTGTTCT+TGG - tig0012617:7712-7731 Msa1352560:intron 40.0%
GGAATGAATGAGTAGGAATC+AGG + tig0012617:7817-7836 None:intergenic 40.0%
!! TTTTTGACTCTGCCATTGCA+CGG - tig0012617:7936-7955 Msa1352560:intron 40.0%
! CCTGCTTTCCCATCTTTTTA+TGG + tig0012617:8371-8390 None:intergenic 40.0%
CCATAAAAAGATGGGAAAGC+AGG - tig0012617:8368-8387 Msa1352560:CDS 40.0%
ACGTTACCTCGGAAAAGAAG+AGG + tig0012617:3733-3752 None:intergenic 45.0%
CCTGTGCAACAGTAAGATTG+AGG + tig0012617:4027-4046 None:intergenic 45.0%
CCTCAATCTTACTGTTGCAC+AGG - tig0012617:4024-4043 Msa1352560:intron 45.0%
GGTACAATAGCAGATTACGC+TGG - tig0012617:4193-4212 Msa1352560:intron 45.0%
TCGCAGCTATTCTGCATTTC+CGG - tig0012617:4331-4350 Msa1352560:intron 45.0%
AGCTATTCTGCATTTCCGGA+TGG - tig0012617:4335-4354 Msa1352560:intron 45.0%
GATTGTAATGGCAAGCCATC+CGG + tig0012617:4353-4372 None:intergenic 45.0%
GCTTGCCATTACAATCGCAA+AGG - tig0012617:4357-4376 Msa1352560:intron 45.0%
GCAGACCTTTGCGATTGTAA+TGG + tig0012617:4365-4384 None:intergenic 45.0%
GAAGTCCTTTCCCCATTTCT+TGG + tig0012617:4612-4631 None:intergenic 45.0%
GGGAAAGGACTTCTATGGAA+AGG - tig0012617:4619-4638 Msa1352560:CDS 45.0%
GAGCTAAGGGCAATTTCTCT+TGG + tig0012617:4695-4714 None:intergenic 45.0%
ACAAATCTCAGGGGAGCTAA+GGG + tig0012617:4708-4727 None:intergenic 45.0%
AACAAATCTCAGGGGAGCTA+AGG + tig0012617:4709-4728 None:intergenic 45.0%
GGAGTGCAACTTCTTCAACA+AGG + tig0012617:4775-4794 None:intergenic 45.0%
CCCTTCACTGAGTGTAATTG+AGG - tig0012617:4822-4841 Msa1352560:intron 45.0%
CCCTCAATTACACTCAGTGA+AGG + tig0012617:4826-4845 None:intergenic 45.0%
!! GCTTTGTTGTTGATCGAGGA+GGG + tig0012617:4902-4921 None:intergenic 45.0%
!! AGCTTTGTTGTTGATCGAGG+AGG + tig0012617:4903-4922 None:intergenic 45.0%
! GATGCTTGGTGGCTTTACAT+TGG - tig0012617:5139-5158 Msa1352560:intron 45.0%
! CTGTTGGTAGGATGTGGAAT+TGG - tig0012617:5166-5185 Msa1352560:intron 45.0%
! TCCCTTGGTGTAATAGGTAC+CGG - tig0012617:5284-5303 Msa1352560:intron 45.0%
ACCGGTACCTATTACACCAA+GGG + tig0012617:5288-5307 None:intergenic 45.0%
AACCGGTACCTATTACACCA+AGG + tig0012617:5289-5308 None:intergenic 45.0%
ACGCCAAAGAATCTTAGAGG+GGG - tig0012617:5324-5343 Msa1352560:CDS 45.0%
TTGCTTCACCTGATGAACTG+CGG + tig0012617:5355-5374 None:intergenic 45.0%
TTGGTGCATTCGTGAATTGG+CGG - tig0012617:5531-5550 Msa1352560:CDS 45.0%
! CCTAGGAGAATCTGGGATAA+AGG + tig0012617:5700-5719 None:intergenic 45.0%
CCTTTATCCCAGATTCTCCT+AGG - tig0012617:5697-5716 Msa1352560:CDS 45.0%
TTATCCCAGATTCTCCTAGG+TGG - tig0012617:5700-5719 Msa1352560:CDS 45.0%
TGATCTTGTGCAGGCAAAGA+TGG - tig0012617:5853-5872 Msa1352560:CDS 45.0%
GATCTTGTGCAGGCAAAGAT+GGG - tig0012617:5854-5873 Msa1352560:CDS 45.0%
TCTTCTTTACAGCGCCTTAG+AGG - tig0012617:5896-5915 Msa1352560:CDS 45.0%
CTTCTTTACAGCGCCTTAGA+GGG - tig0012617:5897-5916 Msa1352560:CDS 45.0%
CATCAGCATTCTTCCCTCTA+AGG + tig0012617:5913-5932 None:intergenic 45.0%
TTATATCAGCTGGTGTGTGC+AGG - tig0012617:6313-6332 Msa1352560:intron 45.0%
! ACAGGGTTATCGGAGAGTTT+TGG - tig0012617:6449-6468 Msa1352560:CDS 45.0%
!! TGGAAGACGACCACTTTTAC+TGG - tig0012617:6648-6667 Msa1352560:CDS 45.0%
! TCTGCAGTGGGAACTTGTTT+AGG - tig0012617:6801-6820 Msa1352560:intron 45.0%
AGCCCTATCATTCTTCTTGC+AGG - tig0012617:6836-6855 Msa1352560:CDS 45.0%
CTCGCAAGTACTTATGCCAA+TGG + tig0012617:6952-6971 None:intergenic 45.0%
!!! AGTCCTATTTTGGCGCTTGT+TGG - tig0012617:7175-7194 Msa1352560:intron 45.0%
ACACCAACAAGCGCCAAAAT+AGG + tig0012617:7181-7200 None:intergenic 45.0%
TCCCTGGGTTATAATGTCTG+AGG - tig0012617:7538-7557 Msa1352560:intron 45.0%
CATATCATGCTGAGGAAGTG+AGG + tig0012617:7620-7639 None:intergenic 45.0%
TGCTGGAAGCTTAGTAACCT+TGG - tig0012617:7692-7711 Msa1352560:intron 45.0%
! CTCATGACTTGGAGTTCAAC+AGG - tig0012617:7759-7778 Msa1352560:intron 45.0%
GCTTGGTCAGGAACTTTCTT+TGG - tig0012617:8145-8164 Msa1352560:CDS 45.0%
TTTGGATTCGCTGCCATATG+TGG - tig0012617:8163-8182 Msa1352560:CDS 45.0%
! AAAACTGGTTCCTGAGACCA+AGG - tig0012617:8207-8226 Msa1352560:intron 45.0%
! AAACTGGTTCCTGAGACCAA+GGG - tig0012617:8208-8227 Msa1352560:intron 45.0%
! GCAAGTCCTCTTCTTTTCCG+AGG - tig0012617:3724-3743 Msa1352560:three_prime_UTR 50.0%
AGTGTGAGAGTAGGAGGTGA+AGG + tig0012617:3835-3854 None:intergenic 50.0%
GTGGTAAGTGTGAGAGTAGG+AGG + tig0012617:3841-3860 None:intergenic 50.0%
AGGGTGGTAAGTGTGAGAGT+AGG + tig0012617:3844-3863 None:intergenic 50.0%
!! ACCACCCTTGTCGCTGTTTT+TGG - tig0012617:3856-3875 Msa1352560:three_prime_UTR 50.0%
ACCAAAAACAGCGACAAGGG+TGG + tig0012617:3860-3879 None:intergenic 50.0%
GGCACCAATCATTGCTCCAA+TGG + tig0012617:4164-4183 None:intergenic 50.0%
TGTTATGCTGAGCAGGCCAT+GGG - tig0012617:4304-4323 Msa1352560:intron 50.0%
GAATAGCTGCGAGAATCCCA+TGG + tig0012617:4323-4342 None:intergenic 50.0%
TGGACTCTCCTTATGGGTGT+AGG + tig0012617:4438-4457 None:intergenic 50.0%
AACTGAGCGTGTGGAAACAC+TGG + tig0012617:5080-5099 None:intergenic 50.0%
GATATCAGCAACTGAGCGTG+TGG + tig0012617:5089-5108 None:intergenic 50.0%
! GGAAGACTGTTGGTAGGATG+TGG - tig0012617:5160-5179 Msa1352560:intron 50.0%
AGAAGAATGATAGGGCTGCG+AGG + tig0012617:6833-6852 None:intergenic 50.0%
! TTTGGCGCTTGTTGGTGTAC+TGG - tig0012617:7183-7202 Msa1352560:intron 50.0%
TGGATCTTACTCGCTAGGCA+TGG - tig0012617:7508-7527 Msa1352560:intron 50.0%
GGATCTTACTCGCTAGGCAT+GGG - tig0012617:7509-7528 Msa1352560:intron 50.0%
TGAGTAGGAATCAGGAACCG+AGG + tig0012617:7809-7828 None:intergenic 50.0%
! AACTGGTTCCTGAGACCAAG+GGG - tig0012617:8209-8228 Msa1352560:intron 50.0%
GTGTTATGCTGAGCAGGCCA+TGG - tig0012617:4303-4322 Msa1352560:intron 55.0%
GGGATTCACCGCAGTTCATC+AGG - tig0012617:5344-5363 Msa1352560:CDS 55.0%
CCAGCCACCTAGGAGAATCT+GGG + tig0012617:5707-5726 None:intergenic 55.0%
ACCAGCCACCTAGGAGAATC+TGG + tig0012617:5708-5727 None:intergenic 55.0%
CAACAACTCACCAGCCACCT+AGG + tig0012617:5717-5736 None:intergenic 55.0%
GGCAAAGATGGGTCGCTTGA+AGG - tig0012617:5865-5884 Msa1352560:CDS 55.0%
TAGGCATGGGAGCAATTCCC+TGG - tig0012617:7522-7541 Msa1352560:intron 55.0%
AGGCATGGGAGCAATTCCCT+GGG - tig0012617:7523-7542 Msa1352560:intron 55.0%
!! TTCTTCTAGGGTACGCCCCT+TGG + tig0012617:8227-8246 None:intergenic 55.0%
ATCGCATTCTACGGCTGCGC+TGG + tig0012617:3505-3524 None:intergenic 60.0%
CCCAGATTCTCCTAGGTGGC+TGG - tig0012617:5704-5723 Msa1352560:intron 60.0%
AGGGTACGCCCCTTGGTCTC+AGG + tig0012617:8220-8239 None:intergenic 65.0%
!! GGCTGCGCTGGCTGACTGGA+TGG + tig0012617:3493-3512 None:intergenic 70.0%
!! CTACGGCTGCGCTGGCTGAC+TGG + tig0012617:3497-3516 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0012617 gene 3487 8687 3487 ID=Msa1352560;Name=Msa1352560
tig0012617 mRNA 3487 8687 3487 ID=Msa1352560-mRNA-1;Parent=Msa1352560;Name=Msa1352560-mRNA-1;_AED=0.31;_eAED=0.31;_QI=204|1|1|1|1|1|18|402|493
tig0012617 exon 3487 4019 3487 ID=Msa1352560-mRNA-1:exon:8241;Parent=Msa1352560-mRNA-1
tig0012617 exon 4394 4508 4394 ID=Msa1352560-mRNA-1:exon:8240;Parent=Msa1352560-mRNA-1
tig0012617 exon 4615 4674 4615 ID=Msa1352560-mRNA-1:exon:8239;Parent=Msa1352560-mRNA-1
tig0012617 exon 4970 5023 4970 ID=Msa1352560-mRNA-1:exon:8238;Parent=Msa1352560-mRNA-1
tig0012617 exon 5317 5376 5317 ID=Msa1352560-mRNA-1:exon:8237;Parent=Msa1352560-mRNA-1
tig0012617 exon 5505 5567 5505 ID=Msa1352560-mRNA-1:exon:8236;Parent=Msa1352560-mRNA-1
tig0012617 exon 5678 5721 5678 ID=Msa1352560-mRNA-1:exon:8235;Parent=Msa1352560-mRNA-1
tig0012617 exon 5850 5934 5850 ID=Msa1352560-mRNA-1:exon:8234;Parent=Msa1352560-mRNA-1
tig0012617 exon 6029 6109 6029 ID=Msa1352560-mRNA-1:exon:8233;Parent=Msa1352560-mRNA-1
tig0012617 exon 6216 6308 6216 ID=Msa1352560-mRNA-1:exon:8232;Parent=Msa1352560-mRNA-1
tig0012617 exon 6449 6513 6449 ID=Msa1352560-mRNA-1:exon:8231;Parent=Msa1352560-mRNA-1
tig0012617 exon 6605 6680 6605 ID=Msa1352560-mRNA-1:exon:8230;Parent=Msa1352560-mRNA-1
tig0012617 exon 6809 6874 6809 ID=Msa1352560-mRNA-1:exon:8229;Parent=Msa1352560-mRNA-1
tig0012617 exon 6970 7035 6970 ID=Msa1352560-mRNA-1:exon:8228;Parent=Msa1352560-mRNA-1
tig0012617 exon 7796 7855 7796 ID=Msa1352560-mRNA-1:exon:8227;Parent=Msa1352560-mRNA-1
tig0012617 exon 7949 8038 7949 ID=Msa1352560-mRNA-1:exon:8226;Parent=Msa1352560-mRNA-1
tig0012617 exon 8129 8191 8129 ID=Msa1352560-mRNA-1:exon:8225;Parent=Msa1352560-mRNA-1
tig0012617 exon 8274 8687 8274 ID=Msa1352560-mRNA-1:exon:8224;Parent=Msa1352560-mRNA-1
tig0012617 five_prime_UTR 8484 8687 8484 ID=Msa1352560-mRNA-1:five_prime_utr;Parent=Msa1352560-mRNA-1
tig0012617 CDS 8274 8483 8274 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 8129 8191 8129 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 7949 8038 7949 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 7796 7855 7796 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 6970 7035 6970 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 6809 6874 6809 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 6605 6680 6605 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 6449 6513 6449 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 6216 6308 6216 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 6029 6109 6029 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 5850 5934 5850 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 5678 5721 5678 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 5505 5567 5505 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 5317 5376 5317 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 4970 5023 4970 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 4615 4674 4615 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 4394 4508 4394 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 CDS 3889 4019 3889 ID=Msa1352560-mRNA-1:cds;Parent=Msa1352560-mRNA-1
tig0012617 three_prime_UTR 3487 3888 3487 ID=Msa1352560-mRNA-1:three_prime_utr;Parent=Msa1352560-mRNA-1
Gene Sequence

>Msa1352560

ATGGACAGTAAAAGAATCATCGAATCTTCTTCTGCAAGTCCTCTTCTTTTCCGAGGTAACGTTGAATCACAATCACAACGCTATGATTCTTCTTCTGATGATGTTGCTTCCAATCATCAACAACACAAACAAAAGATTACTCCTTCACCTCCTACTCTCACACTTACCACCCTTGTCGCTGTTTTTGGTTCTTACGTTTTTGGAACTGCTATCGGATATTCATCCCCTACTCAAGCTAGAATCATGATTGACCTCAATCTTACTGTTGCACAGTTTTCAATTTTCGGTTCAATATTGACCATTGGAGCAATGATTGGTGCCATTGTTAGTGGTACAATAGCAGATTACGCTGGTCGTCGTCTTGCCATGGGATTCTCGCAGCTATTCTGCATTTCCGGATGGCTTGCCATTACAATCGCAAAGGATGCTTGGTGGCTTTACATTGGAAGACTGTTGGTAGGATGTGGAATTGGCCTGCTATCTTATGTGGTACCGGTTTATATAGCAGAAATAACGCCAAAGAATCTTAGAGGGGGATTCACCGCAGTTCATCAGCTAATGATCTGTTGTGGGATGTCATTAACTTATCTTATTGGTGCATTCGTGAATTGGCGGATTTTGGCTATAATAGGAATTGTTCCATGTCTTGTACAACTTCTGAGTCTACCCTTTATCCCAGATTCTCCTAGGTGGCTGGCAAAGATGGGTCGCTTGAAGGAGAGTGATTCTTCTTTACAGCGCCTTAGAGGGAAGAATGCTGATGTTTATAAAGAGGCCAATGAAATCAGAGATTATACAGAAGCCCTTCAGCAACAAACAGAAGCTAGCATTATTGGCTTATTTCAATTGCAATATTTGAAGTCACTTACAGTAGGACTCGGCTTGATGATACTACAACAGTTTGGAGGGATTAACGGCATTGTTTTCTACGCGAATTCTATATTTATATCAGCTGGGTTATCGGAGAGTTTTGGAACTATAGCAATGGTTGCTGTTAAGATTCCAATGACAACTTTAGGAGTATTTTTGATGGATAAATCTGGAAGACGACCACTTTTACTGTTGTCTGCAGTGGGAACTTGTTTAGGATGCTTCCTCGCAGCCCTATCATTCTTCTTGCAGGACATACATAAATGGAAGGAAGTCAGTCCTATTTTGGCGCTTGTTGGTGTACTGGTATATGTTGGATCTTACTCGCTAGGCATGGGAGCAATTCCCTGGGTTATAATGTCTGAGATATTTCCTATTAACGTTAAGGGTTCTGCTGGAAGCTTAGTAACCTTGGTTAACTGGTTGTGTTCTTGGATTATATCATATGCTTTTAACTTTCTCATGACTTGGAGTTCAACAGGAACTTTCTTTGGATTCGCTGCCATATGTGGCTTCACTGTTTTATTCGTAGCAAAACTGGTTCCTGAGACCAAGGGGCGTACCCTAGAAGAAATTCAAGCTTCCTTGAATTCAAATTCAATGAAGAAATGA
Protein sequence

>Msa1352560

MDSKRIIESSSASPLLFRGNVESQSQRYDSSSDDVASNHQQHKQKITPSPPTLTLTTLVAVFGSYVFGTAIGYSSPTQARIMIDLNLTVAQFSIFGSILTIGAMIGAIVSGTIADYAGRRLAMGFSQLFCISGWLAITIAKDAWWLYIGRLLVGCGIGLLSYVVPVYIAEITPKNLRGGFTAVHQLMICCGMSLTYLIGAFVNWRILAIIGIVPCLVQLLSLPFIPDSPRWLAKMGRLKESDSSLQRLRGKNADVYKEANEIRDYTEALQQQTEASIIGLFQLQYLKSLTVGLGLMILQQFGGINGIVFYANSIFISAGLSESFGTIAMVAVKIPMTTLGVFLMDKSGRRPLLLLSAVGTCLGCFLAALSFFLQDIHKWKEVSPILALVGVLVYVGSYSLGMGAIPWVIMSEIFPINVKGSAGSLVTLVNWLCSWIISYAFNFLMTWSSTGTFFGFAAICGFTVLFVAKLVPETKGRTLEEIQASLNSNSMKK*