Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353140 | XP_003610719.1 | 92.903 | 310 | 17 | 3 | 1 | 308 | 1 | 307 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353140 | sp|A0LHG0|SURE_SYNFM | 35.955 | 267 | 134 | 9 | 13 | 278 | 2 | 232 | 3.44e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353140 | G7K2E3 | 92.903 | 310 | 17 | 3 | 1 | 308 | 1 | 307 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0388730 | Msa1353140 | 0.804037 | 2.617630e-49 | -8.615850e-47 |
| Msa0320430 | Msa1353140 | 0.812636 | 3.838047e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353140 | MtrunA17_Chr5g0394431 | 92.903 | 310 | 17 | 3 | 1 | 308 | 1 | 307 | 0.0 | 591 |
| Msa1353140 | MtrunA17_Chr1g0205501 | 70.000 | 310 | 87 | 4 | 1 | 308 | 1 | 306 | 1.11e-163 | 457 |
| Msa1353140 | MtrunA17_Chr5g0394441 | 77.711 | 166 | 34 | 2 | 145 | 308 | 23 | 187 | 9.07e-90 | 265 |
| Msa1353140 | MtrunA17_Chr2g0330031 | 35.604 | 323 | 168 | 6 | 14 | 299 | 53 | 372 | 4.32e-66 | 211 |
| Msa1353140 | MtrunA17_Chr1g0205511 | 54.762 | 84 | 33 | 3 | 209 | 288 | 1 | 83 | 3.93e-21 | 85.9 |
| Msa1353140 | MtrunA17_Chr5g0394461 | 86.486 | 37 | 5 | 0 | 12 | 48 | 17 | 53 | 5.55e-16 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353140 | AT4G14930.1 | 57.143 | 301 | 119 | 5 | 14 | 307 | 16 | 313 | 6.24e-122 | 352 |
| Msa1353140 | AT4G14930.2 | 56.475 | 278 | 110 | 6 | 14 | 283 | 16 | 290 | 2.82e-109 | 320 |
| Msa1353140 | AT1G72880.2 | 35.962 | 317 | 167 | 6 | 14 | 296 | 63 | 377 | 8.99e-62 | 201 |
| Msa1353140 | AT1G72880.1 | 35.962 | 317 | 167 | 6 | 14 | 296 | 63 | 377 | 8.99e-62 | 201 |
Find 91 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTCCTTCGCTGTTTC+TGG | 0.110041 | tig0013076:+19164 | Msa1353140:CDS |
| TCCATTGATGATGCAGATTT+AGG | 0.145081 | tig0013076:-24257 | None:intergenic |
| TTTGCAGTAAATGTTTATTA+TGG | 0.221782 | tig0013076:-24127 | None:intergenic |
| GTTGGTATTTACTTGATAAA+TGG | 0.235564 | tig0013076:+24040 | Msa1353140:three_prime_UTR |
| AGGTAGTGAGTGGCATAAAT+AGG | 0.271309 | tig0013076:+20451 | Msa1353140:intron |
| CCATTGATGATGCAGATTTA+GGG | 0.295174 | tig0013076:-24256 | None:intergenic |
| GCTGCCGACGAGAGGTGTTT+AGG | 0.296045 | tig0013076:-23775 | None:intergenic |
| AAATGTTCGCAAAAGTCATT+TGG | 0.332318 | tig0013076:-23982 | None:intergenic |
| CGCTCCTGGCTTAAGAGCTT+TGG | 0.339950 | tig0013076:+19010 | Msa1353140:CDS |
| CTCTGATTGCAATGTATTCC+TGG | 0.343354 | tig0013076:+23845 | Msa1353140:three_prime_UTR |
| ACTGCTGATTTCTCAGTATC+AGG | 0.346261 | tig0013076:-19080 | None:intergenic |
| GGTAGTGAGTGGCATAAATA+GGG | 0.354531 | tig0013076:+20452 | Msa1353140:intron |
| GCCAAACAAGTTCATATTCA+TGG | 0.356932 | tig0013076:+19137 | Msa1353140:CDS |
| CTGCCGACGAGAGGTGTTTA+GGG | 0.359627 | tig0013076:-23774 | None:intergenic |
| CCCGCTGATTGCACTTCTCT+TGG | 0.364382 | tig0013076:+19191 | Msa1353140:CDS |
| CTCGCAAATAAAAGATGTTC+AGG | 0.372141 | tig0013076:-23191 | None:intergenic |
| ACCAGTACTGAGTTTATGAT+TGG | 0.387156 | tig0013076:-21748 | None:intergenic |
| TTGTAGCCAATCCTCAAAAT+AGG | 0.388766 | tig0013076:-23746 | None:intergenic |
| TCCATGAATATGAACTTGTT+TGG | 0.390536 | tig0013076:-19138 | None:intergenic |
| TCATATGAAATGGAGATAGA+AGG | 0.392459 | tig0013076:-21430 | None:intergenic |
| AACATACCAGTCATATGAAA+TGG | 0.413011 | tig0013076:-21440 | None:intergenic |
| TGAACTTGTTTGGCAGCTAT+AGG | 0.420107 | tig0013076:-19128 | None:intergenic |
| TGGAATAACATAACAACCTA+TGG | 0.422203 | tig0013076:-24107 | None:intergenic |
| CTGTGGTGAATGGAAAATTC+TGG | 0.422490 | tig0013076:+23924 | Msa1353140:three_prime_UTR |
| GACGGAAGGAAAGAGTGATT+TGG | 0.422993 | tig0013076:-19219 | None:intergenic |
| GGTTATTCTTCTGTGGTGAA+TGG | 0.429086 | tig0013076:+23914 | Msa1353140:three_prime_UTR |
| TATTCTATGTCCAGGGTTGA+AGG | 0.439800 | tig0013076:+21679 | Msa1353140:intron |
| GGGTTACAAGCTAACGAGGC+AGG | 0.444468 | tig0013076:+23049 | Msa1353140:intron |
| ATTACTGTAACTGCTCTTGC+TGG | 0.445809 | tig0013076:+23694 | Msa1353140:CDS |
| AGGAGAGGACTTACAAGATC+AGG | 0.448150 | tig0013076:-19242 | None:intergenic |
| TCTGTATCATCATCATAATC+AGG | 0.448757 | tig0013076:-23566 | None:intergenic |
| CTATCTCCATTTCATATGAC+TGG | 0.452640 | tig0013076:+21434 | Msa1353140:CDS |
| AATGTTCGCAAAAGTCATTT+GGG | 0.459315 | tig0013076:-23981 | None:intergenic |
| TACCTTATGGTTAGCAACAT+TGG | 0.464242 | tig0013076:-21827 | None:intergenic |
| GTTTACTCAGGCACTGTAGC+TGG | 0.466587 | tig0013076:+21379 | Msa1353140:CDS |
| GGGTAAAAGTATCTTTAAGA+TGG | 0.475283 | tig0013076:+23070 | Msa1353140:CDS |
| AACCAATGTTGCTAACCATA+AGG | 0.509023 | tig0013076:+21825 | Msa1353140:CDS |
| GACGATGGAATCGACGCTCC+TGG | 0.513493 | tig0013076:+18996 | Msa1353140:CDS |
| TCCAATCATAAACTCAGTAC+TGG | 0.516828 | tig0013076:+21747 | Msa1353140:CDS |
| TTATGGTTAGCAACATTGGT+TGG | 0.519228 | tig0013076:-21823 | None:intergenic |
| ATCACGCTAGTTAAGAATCA+AGG | 0.519247 | tig0013076:+23893 | Msa1353140:three_prime_UTR |
| AAGAGTCTCCCCTGAAAAGT+AGG | 0.521594 | tig0013076:+24148 | Msa1353140:three_prime_UTR |
| AAAGTATCTTTAAGATGGGA+TGG | 0.524804 | tig0013076:+23075 | Msa1353140:CDS |
| TACAGATCACAAATCTTTGA+AGG | 0.525967 | tig0013076:+23583 | Msa1353140:CDS |
| TTCCCTTTCAGTGTTTACTC+AGG | 0.528508 | tig0013076:+21367 | Msa1353140:intron |
| TATCATCATCATAATCAGGT+AGG | 0.530713 | tig0013076:-23562 | None:intergenic |
| CACAATGTCTATAGATCCAT+AGG | 0.532565 | tig0013076:+24091 | Msa1353140:three_prime_UTR |
| ATGCAAGTGCAATTATTGCC+AGG | 0.533282 | tig0013076:-23863 | None:intergenic |
| GGTAAAAGTATCTTTAAGAT+GGG | 0.542844 | tig0013076:+23071 | Msa1353140:CDS |
| CACTGTAGCTGGAGCTCGAG+AGG | 0.542909 | tig0013076:+21390 | Msa1353140:CDS |
| AGAAGGGATATTGTTGAAGA+AGG | 0.544062 | tig0013076:-21413 | None:intergenic |
| GACACCAAAGCTCTTAAGCC+AGG | 0.545144 | tig0013076:-19014 | None:intergenic |
| TCCAAGAGAAGTGCAATCAG+CGG | 0.552211 | tig0013076:-19192 | None:intergenic |
| CATATGAAATGGAGATAGAA+GGG | 0.554398 | tig0013076:-21429 | None:intergenic |
| CCAAGAGAAGTGCAATCAGC+GGG | 0.556534 | tig0013076:-19191 | None:intergenic |
| AATGTTGATGCGATGGAAGA+GGG | 0.561341 | tig0013076:+18930 | Msa1353140:exon |
| AGAAACAGCGAAGGAAGAAA+CGG | 0.565756 | tig0013076:-19162 | None:intergenic |
| GATCACAAATCTTTGAAGGC+GGG | 0.566869 | tig0013076:+23587 | Msa1353140:CDS |
| GAATCAAGGTTATTCTTCTG+TGG | 0.569175 | tig0013076:+23907 | Msa1353140:three_prime_UTR |
| AATGCAAACTTGTGCAGCAA+GGG | 0.572061 | tig0013076:-21725 | None:intergenic |
| ATAAAGAAACAAAGCTACCC+TGG | 0.585747 | tig0013076:+21775 | Msa1353140:CDS |
| ACTTGATAAATGGTGAATTG+TGG | 0.588929 | tig0013076:+24050 | Msa1353140:three_prime_UTR |
| GAATGTTGATGCGATGGAAG+AGG | 0.589743 | tig0013076:+18929 | Msa1353140:exon |
| AACATTAACAATAAGAGAGG+AGG | 0.591884 | tig0013076:+18954 | Msa1353140:CDS |
| TTATTTGAACAGGTAGTGAG+TGG | 0.594935 | tig0013076:+20441 | Msa1353140:intron |
| ATCATCATCATAATCAGGTA+GGG | 0.598459 | tig0013076:-23561 | None:intergenic |
| GGTTACAAGCTAACGAGGCA+GGG | 0.604854 | tig0013076:+23050 | Msa1353140:CDS |
| GGTAACATTAACAATAAGAG+AGG | 0.605178 | tig0013076:+18951 | Msa1353140:CDS |
| GGAGAGGACTTACAAGATCA+GGG | 0.606857 | tig0013076:-19241 | None:intergenic |
| CAGTTGGTCACAGCATCACA+TGG | 0.611704 | tig0013076:+19099 | Msa1353140:CDS |
| GAATGCAAACTTGTGCAGCA+AGG | 0.611800 | tig0013076:-21726 | None:intergenic |
| GGTGTTGAATGTTGATGCGA+TGG | 0.615515 | tig0013076:+18923 | Msa1353140:exon |
| ATTATAAAGCTGCCGACGAG+AGG | 0.616494 | tig0013076:-23783 | None:intergenic |
| TGAAGGAAAGAGTAATCCAC+AGG | 0.618509 | tig0013076:+21696 | Msa1353140:CDS |
| GGGAGTACCAGAAACAGCGA+AGG | 0.623127 | tig0013076:-19171 | None:intergenic |
| TCTCCCCTGAAAAGTAGGAG+TGG | 0.634647 | tig0013076:+24153 | Msa1353140:three_prime_UTR |
| GATACTGAGAAATCAGCAGT+TGG | 0.641119 | tig0013076:+19083 | Msa1353140:CDS |
| CAAGTCACCTCTGAGACAGA+AGG | 0.641811 | tig0013076:+23101 | Msa1353140:CDS |
| TCTTCGTCCTTCTGTCTCAG+AGG | 0.641863 | tig0013076:-23108 | None:intergenic |
| CTTACAAGATCAGGGACGGA+AGG | 0.642273 | tig0013076:-19233 | None:intergenic |
| GCAGCAAGGGCAAAGTCCTG+TGG | 0.646391 | tig0013076:-21712 | None:intergenic |
| AGGACTTACAAGATCAGGGA+CGG | 0.647716 | tig0013076:-19237 | None:intergenic |
| GGTGAATGGAAAATTCTGGC+AGG | 0.654231 | tig0013076:+23928 | Msa1353140:three_prime_UTR |
| TATCCCTAAACACCTCTCGT+CGG | 0.656627 | tig0013076:+23771 | Msa1353140:CDS |
| GTATCTTTAAGATGGGATGG+AGG | 0.656769 | tig0013076:+23078 | Msa1353140:CDS |
| ATAAATAGGGGTAGCAACTG+CGG | 0.656882 | tig0013076:+20465 | Msa1353140:CDS |
| AGATCACAAATCTTTGAAGG+CGG | 0.659879 | tig0013076:+23586 | Msa1353140:CDS |
| GTAGTGAGTGGCATAAATAG+GGG | 0.660329 | tig0013076:+20453 | Msa1353140:CDS |
| TCTTGCTGGTCTCTCTCATG+CGG | 0.662540 | tig0013076:+23708 | Msa1353140:CDS |
| ATTCTGATAACAAACGACGA+TGG | 0.666629 | tig0013076:+18981 | Msa1353140:CDS |
| AAAAGGGTTACAAGCTAACG+AGG | 0.689847 | tig0013076:+23045 | Msa1353140:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAGTTAATTCATAAA+CGG | + | tig0013076:20034-20053 | Msa1353140:intron | 10.0% |
| !!! | AAATTTTTTATTGTTACTTT+AGG | + | tig0013076:22132-22151 | Msa1353140:intron | 10.0% |
| !!! | ACTTCTAAGTTAATAAATTT+TGG | + | tig0013076:20195-20214 | Msa1353140:intron | 15.0% |
| !!! | CTTCTAAGTTAATAAATTTT+GGG | + | tig0013076:20196-20215 | Msa1353140:intron | 15.0% |
| !! | AAATAAGTCAAAACAATTTA+CGG | - | tig0013076:20645-20664 | None:intergenic | 15.0% |
| !!! | AATTCTTTACTTATATTTTG+TGG | + | tig0013076:20699-20718 | Msa1353140:intron | 15.0% |
| !!! | TTTTTGTTCCATTAAAAATA+TGG | + | tig0013076:21026-21045 | Msa1353140:intron | 15.0% |
| !!! | AATGATTACCATATTTTTAA+TGG | - | tig0013076:21037-21056 | None:intergenic | 15.0% |
| !!! | TAAATAGAACAATTTTTAAC+AGG | - | tig0013076:21174-21193 | None:intergenic | 15.0% |
| !! | AAATAGTATAAATCATAAGA+GGG | - | tig0013076:21273-21292 | None:intergenic | 15.0% |
| !! | AAAATAGTATAAATCATAAG+AGG | - | tig0013076:21274-21293 | None:intergenic | 15.0% |
| !!! | TACTATTTTTATTTTTGCTA+AGG | + | tig0013076:21285-21304 | Msa1353140:intron | 15.0% |
| !!! | AGAATATAATCAATTTTCTT+AGG | - | tig0013076:22225-22244 | None:intergenic | 15.0% |
| !! | ATATTAAATGAAAATACAGA+AGG | - | tig0013076:22902-22921 | None:intergenic | 15.0% |
| !! | AGAATTGTTTAGTCAAAAAT+TGG | + | tig0013076:18890-18909 | Msa1353140:five_prime_UTR | 20.0% |
| !! | GAATTGTTTAGTCAAAAATT+GGG | + | tig0013076:18891-18910 | Msa1353140:five_prime_UTR | 20.0% |
| !! | AATAAGCTATTTATTGAAAC+AGG | + | tig0013076:20090-20109 | Msa1353140:intron | 20.0% |
| !! | CGAAGAAATGAATAAAATAA+TGG | + | tig0013076:20141-20160 | Msa1353140:intron | 20.0% |
| !!! | AAAGAACTTTTTTGTAATTG+AGG | - | tig0013076:20224-20243 | None:intergenic | 20.0% |
| !!! | CAAAAAAAAGATTTAAGGTT+AGG | - | tig0013076:21012-21031 | None:intergenic | 20.0% |
| !! | TGGAACAAAAAAAAGATTTA+AGG | - | tig0013076:21017-21036 | None:intergenic | 20.0% |
| !!! | GCAATGTAAATTATTTCTTT+GGG | - | tig0013076:21090-21109 | None:intergenic | 20.0% |
| !!! | AGCAATGTAAATTATTTCTT+TGG | - | tig0013076:21091-21110 | None:intergenic | 20.0% |
| !! | CTATTTATTTCAAATGACAA+AGG | + | tig0013076:21187-21206 | Msa1353140:intron | 20.0% |
| !! | AAAGTTCAACTTAACAAATA+TGG | - | tig0013076:21505-21524 | None:intergenic | 20.0% |
| !! | ACAATTATAAGCTGATTAAT+TGG | - | tig0013076:21533-21552 | None:intergenic | 20.0% |
| !! | ACTTATTACAATATACCTTA+TGG | - | tig0013076:21843-21862 | None:intergenic | 20.0% |
| !! | AATAAGCATAATACATGATA+AGG | + | tig0013076:22053-22072 | Msa1353140:intron | 20.0% |
| !! | GATTTATTCATAATATATGC+TGG | + | tig0013076:22077-22096 | Msa1353140:intron | 20.0% |
| !! | AAGATTTATATGACAATTTC+TGG | - | tig0013076:22273-22292 | None:intergenic | 20.0% |
| !! | AAATGTAAACTTCAATATGT+AGG | - | tig0013076:22925-22944 | None:intergenic | 20.0% |
| !! | AAGTTTACATTTGTATTCAA+AGG | + | tig0013076:22933-22952 | Msa1353140:intron | 20.0% |
| !! | ATCTTCTGTAACTAATTTAT+TGG | + | tig0013076:23003-23022 | Msa1353140:intron | 20.0% |
| !! | AACTACATTATTATTCATTG+CGG | - | tig0013076:23503-23522 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTCAAACTTTTGT+AGG | + | tig0013076:23529-23548 | Msa1353140:intron | 20.0% |
| !!! | TTTGTAACATTTTTTTCAGT+TGG | + | tig0013076:24022-24041 | Msa1353140:three_prime_UTR | 20.0% |
| !! | TTTGCAGTAAATGTTTATTA+TGG | - | tig0013076:24130-24149 | None:intergenic | 20.0% |
| !!! | AAGTATTGTCATTTTGTGTT+TGG | + | tig0013076:18813-18832 | Msa1353140:five_prime_UTR | 25.0% |
| ! | AATTAATTGAACAATCACAG+TGG | + | tig0013076:19399-19418 | Msa1353140:intron | 25.0% |
| ! | TCAAATAAACTAATCCAATG+AGG | - | tig0013076:19608-19627 | None:intergenic | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | - | tig0013076:19797-19816 | None:intergenic | 25.0% |
| !!! | TTGTTTTCATAAGTGTCATT+TGG | - | tig0013076:19897-19916 | None:intergenic | 25.0% |
| !! | TTTTATTCATTTCTTCGCTA+TGG | - | tig0013076:20138-20157 | None:intergenic | 25.0% |
| ! | AATAAAATAATGGCCTAGTT+TGG | + | tig0013076:20151-20170 | Msa1353140:intron | 25.0% |
| ! | ATCAGAATAAACTTCATAAC+AGG | - | tig0013076:20381-20400 | None:intergenic | 25.0% |
| ! | TACCTGTTCAAATAAATACA+AGG | - | tig0013076:20436-20455 | None:intergenic | 25.0% |
| ! | AAAGTCTAAAGGTGATAAAA+TGG | - | tig0013076:20510-20529 | None:intergenic | 25.0% |
| !! | TTTTATCACCTTTAGACTTT+AGG | + | tig0013076:20510-20529 | Msa1353140:intron | 25.0% |
| ! | TTTATCACCTTTAGACTTTA+GGG | + | tig0013076:20511-20530 | Msa1353140:intron | 25.0% |
| ! | ACACTAACAAACAATATAAG+TGG | - | tig0013076:20581-20600 | None:intergenic | 25.0% |
| ! | GTTTACAAAACTACAAATGT+AGG | - | tig0013076:20607-20626 | None:intergenic | 25.0% |
| !! | CATTAGCTTAATTAAGTGTT+TGG | - | tig0013076:20818-20837 | None:intergenic | 25.0% |
| !! | CCATACATAGAATTTTCAAA+TGG | - | tig0013076:20940-20959 | None:intergenic | 25.0% |
| ! | CCATTTGAAAATTCTATGTA+TGG | + | tig0013076:20937-20956 | Msa1353140:intron | 25.0% |
| ! | TGAAAAGCTATTGCTATAAA+AGG | - | tig0013076:21634-21653 | None:intergenic | 25.0% |
| ! | TATTCAAAAAACATCTTCCA+GGG | - | tig0013076:21795-21814 | None:intergenic | 25.0% |
| ! | ATATTCAAAAAACATCTTCC+AGG | - | tig0013076:21796-21815 | None:intergenic | 25.0% |
| ! | AACATAAATTAATGCTGTGA+TGG | + | tig0013076:22030-22049 | Msa1353140:intron | 25.0% |
| !! | AATTTGACAGGCATTATTTT+AGG | + | tig0013076:22156-22175 | Msa1353140:intron | 25.0% |
| ! | TTGTGTGTTATGATAATTTG+TGG | + | tig0013076:22438-22457 | Msa1353140:intron | 25.0% |
| !! | TGTGTGTTATGATAATTTGT+GGG | + | tig0013076:22439-22458 | Msa1353140:intron | 25.0% |
| ! | TACTCAAATAAACAAACACA+CGG | - | tig0013076:22563-22582 | None:intergenic | 25.0% |
| ! | TTGTTTATTTGAGTATGTGT+TGG | + | tig0013076:22568-22587 | Msa1353140:intron | 25.0% |
| !! | ATAGCAAATTTTTATCCTTG+TGG | + | tig0013076:22602-22621 | Msa1353140:intron | 25.0% |
| ! | GTATATATTGTCATGATATC+AGG | - | tig0013076:22681-22700 | None:intergenic | 25.0% |
| ! | TTATGCAACATTTCAATGAA+GGG | - | tig0013076:22787-22806 | None:intergenic | 25.0% |
| ! | ATTATGCAACATTTCAATGA+AGG | - | tig0013076:22788-22807 | None:intergenic | 25.0% |
| ! | TTCATTGAAATGTTGCATAA+TGG | + | tig0013076:22787-22806 | Msa1353140:intron | 25.0% |
| ! | TCATTGAAATGTTGCATAAT+GGG | + | tig0013076:22788-22807 | Msa1353140:intron | 25.0% |
| !!! | GGTAAAAGTATCTTTAAGAT+GGG | + | tig0013076:23071-23090 | Msa1353140:CDS | 25.0% |
| ! | AGCATATTGTCTAATACTTT+CGG | + | tig0013076:23276-23295 | Msa1353140:intron | 25.0% |
| !!! | TTTAGTTCTTCCATATAACT+TGG | - | tig0013076:23434-23453 | None:intergenic | 25.0% |
| ! | GAAGAACTAAAAAACTTACT+TGG | + | tig0013076:23443-23462 | Msa1353140:intron | 25.0% |
| ! | AACTAAAAAACTTACTTGGA+TGG | + | tig0013076:23447-23466 | Msa1353140:intron | 25.0% |
| ! | GTTGGTATTTACTTGATAAA+TGG | + | tig0013076:24040-24059 | Msa1353140:three_prime_UTR | 25.0% |
| GGTAACATTAACAATAAGAG+AGG | + | tig0013076:18951-18970 | Msa1353140:CDS | 30.0% | |
| AACATTAACAATAAGAGAGG+AGG | + | tig0013076:18954-18973 | Msa1353140:CDS | 30.0% | |
| ! | TCCATGAATATGAACTTGTT+TGG | - | tig0013076:19141-19160 | None:intergenic | 30.0% |
| ! | AAATAAGCAGAAGTGTGTAT+GGG | - | tig0013076:19309-19328 | None:intergenic | 30.0% |
| ! | AAAATAAGCAGAAGTGTGTA+TGG | - | tig0013076:19310-19329 | None:intergenic | 30.0% |
| TGATTGCTACAATGTAATTG+GGG | - | tig0013076:19505-19524 | None:intergenic | 30.0% | |
| CTGATTGCTACAATGTAATT+GGG | - | tig0013076:19506-19525 | None:intergenic | 30.0% | |
| ACTGATTGCTACAATGTAAT+TGG | - | tig0013076:19507-19526 | None:intergenic | 30.0% | |
| ! | TAAGTCATTTCTAGAGAACA+CGG | - | tig0013076:19580-19599 | None:intergenic | 30.0% |
| ! | TGTTCTCTAGAAATGACTTA+TGG | + | tig0013076:19580-19599 | Msa1353140:intron | 30.0% |
| ! | GTTCTCTAGAAATGACTTAT+GGG | + | tig0013076:19581-19600 | Msa1353140:intron | 30.0% |
| ! | TTCTCTAGAAATGACTTATG+GGG | + | tig0013076:19582-19601 | Msa1353140:intron | 30.0% |
| AAAAATAAGCCAATCCAAAC+AGG | + | tig0013076:19871-19890 | Msa1353140:intron | 30.0% | |
| !! | CTTATTTTCATAAGCTCTCT+AGG | + | tig0013076:19946-19965 | Msa1353140:intron | 30.0% |
| ! | GGTGTTGTCAAATACTATTA+GGG | - | tig0013076:20117-20136 | None:intergenic | 30.0% |
| !! | TGGTGTTGTCAAATACTATT+AGG | - | tig0013076:20118-20137 | None:intergenic | 30.0% |
| TGCCTTGTATTTATTTGAAC+AGG | + | tig0013076:20431-20450 | Msa1353140:intron | 30.0% | |
| ! | TAAGCGTTTGAGAATTTTTC+AGG | - | tig0013076:20780-20799 | None:intergenic | 30.0% |
| ! | CATCAACATTTTTACTCTGA+GGG | - | tig0013076:20895-20914 | None:intergenic | 30.0% |
| ! | TCATCAACATTTTTACTCTG+AGG | - | tig0013076:20896-20915 | None:intergenic | 30.0% |
| ACTAATTACACAAACAGTGA+CGG | - | tig0013076:21345-21364 | None:intergenic | 30.0% | |
| CATATGAAATGGAGATAGAA+GGG | - | tig0013076:21432-21451 | None:intergenic | 30.0% | |
| TCATATGAAATGGAGATAGA+AGG | - | tig0013076:21433-21452 | None:intergenic | 30.0% | |
| AACATACCAGTCATATGAAA+TGG | - | tig0013076:21443-21462 | None:intergenic | 30.0% | |
| AATGAATGTCTCGAGTATTA+TGG | + | tig0013076:21565-21584 | Msa1353140:intron | 30.0% | |
| TATCATGTTTGACCATTTGA+AGG | + | tig0013076:21655-21674 | Msa1353140:intron | 30.0% | |
| TATGTTAAGCGATCAAAACA+CGG | - | tig0013076:22011-22030 | None:intergenic | 30.0% | |
| ! | GTTACTTTAGGTAATTTGAC+AGG | + | tig0013076:22144-22163 | Msa1353140:intron | 30.0% |
| ! | AGGACTATAGCTCTATTAAT+AGG | + | tig0013076:22176-22195 | Msa1353140:intron | 30.0% |
| AACTTACGCACAATAAAACT+TGG | - | tig0013076:22250-22269 | None:intergenic | 30.0% | |
| TAGTTAACTCCTTATGAAAG+GGG | - | tig0013076:22363-22382 | None:intergenic | 30.0% | |
| CTAGTTAACTCCTTATGAAA+GGG | - | tig0013076:22364-22383 | None:intergenic | 30.0% | |
| TCTAGTTAACTCCTTATGAA+AGG | - | tig0013076:22365-22384 | None:intergenic | 30.0% | |
| ACTCAAATAAACAAACACAC+GGG | - | tig0013076:22562-22581 | None:intergenic | 30.0% | |
| !! | AAAATTTGCTATTCAACCAG+TGG | - | tig0013076:22594-22613 | None:intergenic | 30.0% |
| CCAAAACAATAAATTCCACA+AGG | - | tig0013076:22620-22639 | None:intergenic | 30.0% | |
| ! | CCTTGTGGAATTTATTGTTT+TGG | + | tig0013076:22617-22636 | Msa1353140:intron | 30.0% |
| CTTTCCACTAATTTACAATG+CGG | - | tig0013076:22706-22725 | None:intergenic | 30.0% | |
| GCATTGTAAATTAGTGGAAA+GGG | + | tig0013076:22705-22724 | Msa1353140:intron | 30.0% | |
| TATGCAACATTTCAATGAAG+GGG | - | tig0013076:22786-22805 | None:intergenic | 30.0% | |
| ! | ACAGCATCTTTTTGTAACAA+GGG | - | tig0013076:22817-22836 | None:intergenic | 30.0% |
| ! | AACAGCATCTTTTTGTAACA+AGG | - | tig0013076:22818-22837 | None:intergenic | 30.0% |
| !! | GGGTAAAAGTATCTTTAAGA+TGG | + | tig0013076:23070-23089 | Msa1353140:CDS | 30.0% |
| !! | AAAGTATCTTTAAGATGGGA+TGG | + | tig0013076:23075-23094 | Msa1353140:CDS | 30.0% |
| !!! | GTTTTTAGGTGTATCTGTAT+TGG | - | tig0013076:23150-23169 | None:intergenic | 30.0% |
| ACAGATACACCTAAAAACTT+TGG | + | tig0013076:23152-23171 | Msa1353140:CDS | 30.0% | |
| ! | GATGATGTACCAAAGTTTTT+AGG | - | tig0013076:23164-23183 | None:intergenic | 30.0% |
| TAGTCAAGCACAATATTAAG+CGG | - | tig0013076:23333-23352 | None:intergenic | 30.0% | |
| GAAATAGATGCCAAGTTATA+TGG | + | tig0013076:23421-23440 | Msa1353140:intron | 30.0% | |
| TTATTATTCATTGCGGAAAG+AGG | - | tig0013076:23496-23515 | None:intergenic | 30.0% | |
| ! | TTCAAACTTTTGTAGGTAAG+AGG | + | tig0013076:23536-23555 | Msa1353140:intron | 30.0% |
| ATCATCATCATAATCAGGTA+GGG | - | tig0013076:23564-23583 | None:intergenic | 30.0% | |
| TATCATCATCATAATCAGGT+AGG | - | tig0013076:23565-23584 | None:intergenic | 30.0% | |
| TCTGTATCATCATCATAATC+AGG | - | tig0013076:23569-23588 | None:intergenic | 30.0% | |
| TACAGATCACAAATCTTTGA+AGG | + | tig0013076:23583-23602 | Msa1353140:CDS | 30.0% | |
| AATGTTCGCAAAAGTCATTT+GGG | - | tig0013076:23984-24003 | None:intergenic | 30.0% | |
| AAATGTTCGCAAAAGTCATT+TGG | - | tig0013076:23985-24004 | None:intergenic | 30.0% | |
| ACTTGATAAATGGTGAATTG+TGG | + | tig0013076:24050-24069 | Msa1353140:three_prime_UTR | 30.0% | |
| TGGAATAACATAACAACCTA+TGG | - | tig0013076:24110-24129 | None:intergenic | 30.0% | |
| !!! | AAGTAGGAGTGGAAATTTTT+TGG | + | tig0013076:24164-24183 | Msa1353140:three_prime_UTR | 30.0% |
| !!! | AGTAGGAGTGGAAATTTTTT+GGG | + | tig0013076:24165-24184 | Msa1353140:three_prime_UTR | 30.0% |
| TCTGAAAAATGAGTGTGAAA+TGG | - | tig0013076:24229-24248 | None:intergenic | 30.0% | |
| ATTCTGATAACAAACGACGA+TGG | + | tig0013076:18981-19000 | Msa1353140:CDS | 35.0% | |
| GCCAAACAAGTTCATATTCA+TGG | + | tig0013076:19137-19156 | Msa1353140:CDS | 35.0% | |
| GATTGCTACAATGTAATTGG+GGG | - | tig0013076:19504-19523 | None:intergenic | 35.0% | |
| TTTAGACAAACTGCCACATT+GGG | + | tig0013076:19543-19562 | Msa1353140:intron | 35.0% | |
| TTGCATAAGTCAATCCAAAC+AGG | - | tig0013076:19711-19730 | None:intergenic | 35.0% | |
| GTTAGAAGCTAATCCAAACT+AGG | - | tig0013076:20167-20186 | None:intergenic | 35.0% | |
| !! | GTTTGGATTAGCTTCTAACT+TGG | + | tig0013076:20168-20187 | Msa1353140:intron | 35.0% |
| TTATTTGAACAGGTAGTGAG+TGG | + | tig0013076:20441-20460 | Msa1353140:intron | 35.0% | |
| AAACACTCCCTAAAGTCTAA+AGG | - | tig0013076:20521-20540 | None:intergenic | 35.0% | |
| !!! | CGTTTGAGAATTTTTCAGGA+CGG | - | tig0013076:20776-20795 | None:intergenic | 35.0% |
| !! | AACATTTTTACTCTGAGGGA+AGG | - | tig0013076:20891-20910 | None:intergenic | 35.0% |
| !! | GTTGATGATCATGTCAAAGT+TGG | + | tig0013076:20908-20927 | Msa1353140:intron | 35.0% |
| AGAAGGGATATTGTTGAAGA+AGG | - | tig0013076:21416-21435 | None:intergenic | 35.0% | |
| CTATCTCCATTTCATATGAC+TGG | + | tig0013076:21434-21453 | Msa1353140:CDS | 35.0% | |
| GACATAGAATAGCCTTCAAA+TGG | - | tig0013076:21670-21689 | None:intergenic | 35.0% | |
| TCCAATCATAAACTCAGTAC+TGG | + | tig0013076:21747-21766 | Msa1353140:CDS | 35.0% | |
| ! | ACCAGTACTGAGTTTATGAT+TGG | - | tig0013076:21751-21770 | None:intergenic | 35.0% |
| ATAAAGAAACAAAGCTACCC+TGG | + | tig0013076:21775-21794 | Msa1353140:CDS | 35.0% | |
| TTATGGTTAGCAACATTGGT+TGG | - | tig0013076:21826-21845 | None:intergenic | 35.0% | |
| AACCAATGTTGCTAACCATA+AGG | + | tig0013076:21825-21844 | Msa1353140:CDS | 35.0% | |
| TACCTTATGGTTAGCAACAT+TGG | - | tig0013076:21830-21849 | None:intergenic | 35.0% | |
| !! | GGTTCTAAGATGATTCTCTT+AGG | + | tig0013076:22098-22117 | Msa1353140:intron | 35.0% |
| TTAGGCTTGTCTCTAATACA+TGG | - | tig0013076:22207-22226 | None:intergenic | 35.0% | |
| TAACTACCGTGATTTCATAG+AGG | - | tig0013076:22321-22340 | None:intergenic | 35.0% | |
| CGGTAGTTATATCCAAAGAA+TGG | + | tig0013076:22332-22351 | Msa1353140:intron | 35.0% | |
| CTCAAATAAACAAACACACG+GGG | - | tig0013076:22561-22580 | None:intergenic | 35.0% | |
| ACTACCGCATTGTAAATTAG+TGG | + | tig0013076:22699-22718 | Msa1353140:intron | 35.0% | |
| CGCATTGTAAATTAGTGGAA+AGG | + | tig0013076:22704-22723 | Msa1353140:intron | 35.0% | |
| ATGCAACATTTCAATGAAGG+GGG | - | tig0013076:22785-22804 | None:intergenic | 35.0% | |
| ! | TTGAAATGTTGCATAATGGG+CGG | + | tig0013076:22791-22810 | Msa1353140:intron | 35.0% |
| CTCGCAAATAAAAGATGTTC+AGG | - | tig0013076:23194-23213 | None:intergenic | 35.0% | |
| !! | ACATCTTTTATTTGCGAGAG+AGG | + | tig0013076:23196-23215 | Msa1353140:CDS | 35.0% |
| ! | AGATCACAAATCTTTGAAGG+CGG | + | tig0013076:23586-23605 | Msa1353140:CDS | 35.0% |
| ! | AGATTGTCAGACCTATTTTG+AGG | + | tig0013076:23735-23754 | Msa1353140:CDS | 35.0% |
| TTGTAGCCAATCCTCAAAAT+AGG | - | tig0013076:23749-23768 | None:intergenic | 35.0% | |
| ATCACGCTAGTTAAGAATCA+AGG | + | tig0013076:23893-23912 | Msa1353140:three_prime_UTR | 35.0% | |
| GAATCAAGGTTATTCTTCTG+TGG | + | tig0013076:23907-23926 | Msa1353140:three_prime_UTR | 35.0% | |
| CACAATGTCTATAGATCCAT+AGG | + | tig0013076:24091-24110 | Msa1353140:three_prime_UTR | 35.0% | |
| !! | ATTTCCACTCCTACTTTTCA+GGG | - | tig0013076:24160-24179 | None:intergenic | 35.0% |
| !! | AATTTCCACTCCTACTTTTC+AGG | - | tig0013076:24161-24180 | None:intergenic | 35.0% |
| !!! | AGTGGAAATTTTTTGGGACT+GGG | + | tig0013076:24171-24190 | Msa1353140:three_prime_UTR | 35.0% |
| AATGTTGATGCGATGGAAGA+GGG | + | tig0013076:18930-18949 | Msa1353140:exon | 40.0% | |
| !! | ACTGCTGATTTCTCAGTATC+AGG | - | tig0013076:19083-19102 | None:intergenic | 40.0% |
| GATACTGAGAAATCAGCAGT+TGG | + | tig0013076:19083-19102 | Msa1353140:CDS | 40.0% | |
| ! | TGAACTTGTTTGGCAGCTAT+AGG | - | tig0013076:19131-19150 | None:intergenic | 40.0% |
| AGAAACAGCGAAGGAAGAAA+CGG | - | tig0013076:19165-19184 | None:intergenic | 40.0% | |
| TAGTGAAAAAGAGAGAGCAG+AGG | - | tig0013076:19265-19284 | None:intergenic | 40.0% | |
| TATCAGTGTTGTGTCTGTGT+CGG | - | tig0013076:19345-19364 | None:intergenic | 40.0% | |
| CAGACACAACACTGATAAGT+AGG | + | tig0013076:19348-19367 | Msa1353140:intron | 40.0% | |
| TGTCTATGTCAGACATGTGT+CGG | - | tig0013076:19436-19455 | None:intergenic | 40.0% | |
| GTTTAGACAAACTGCCACAT+TGG | + | tig0013076:19542-19561 | Msa1353140:intron | 40.0% | |
| AAACTGCCACATTGGGATTA+TGG | + | tig0013076:19550-19569 | Msa1353140:intron | 40.0% | |
| !! | TAAGTGTCATTTGGCCTGTT+TGG | - | tig0013076:19888-19907 | None:intergenic | 40.0% |
| AGGTAGTGAGTGGCATAAAT+AGG | + | tig0013076:20451-20470 | Msa1353140:intron | 40.0% | |
| GGTAGTGAGTGGCATAAATA+GGG | + | tig0013076:20452-20471 | Msa1353140:intron | 40.0% | |
| GTAGTGAGTGGCATAAATAG+GGG | + | tig0013076:20453-20472 | Msa1353140:CDS | 40.0% | |
| ATAAATAGGGGTAGCAACTG+CGG | + | tig0013076:20465-20484 | Msa1353140:CDS | 40.0% | |
| !!! | GAATTTTTCAGGACGGCTAA+AGG | - | tig0013076:20769-20788 | None:intergenic | 40.0% |
| TGCATGTACCTATAGAGTGA+AGG | + | tig0013076:20840-20859 | Msa1353140:intron | 40.0% | |
| ATGTACCTATAGAGTGAAGG+AGG | + | tig0013076:20843-20862 | Msa1353140:intron | 40.0% | |
| !! | AGGAAGATGGATTGTGATCT+TGG | - | tig0013076:20871-20890 | None:intergenic | 40.0% |
| TCGTTGTCTCTTCATAGCTT+AGG | - | tig0013076:21221-21240 | None:intergenic | 40.0% | |
| GAGGGTCATTTCAAATTTCG+AGG | - | tig0013076:21255-21274 | None:intergenic | 40.0% | |
| !! | GTGACGGACAAAAATTTCTG+TGG | - | tig0013076:21329-21348 | None:intergenic | 40.0% |
| TTCCCTTTCAGTGTTTACTC+AGG | + | tig0013076:21367-21386 | Msa1353140:intron | 40.0% | |
| TGCCTGAGTAAACACTGAAA+GGG | - | tig0013076:21372-21391 | None:intergenic | 40.0% | |
| TCTCGAGTATTATGGCTTAC+TGG | + | tig0013076:21573-21592 | Msa1353140:intron | 40.0% | |
| TTGAAGGCTATTCTATGTCC+AGG | + | tig0013076:21671-21690 | Msa1353140:intron | 40.0% | |
| TGAAGGCTATTCTATGTCCA+GGG | + | tig0013076:21672-21691 | Msa1353140:intron | 40.0% | |
| TATTCTATGTCCAGGGTTGA+AGG | + | tig0013076:21679-21698 | Msa1353140:intron | 40.0% | |
| ATTACTCTTTCCTTCAACCC+TGG | - | tig0013076:21692-21711 | None:intergenic | 40.0% | |
| TGAAGGAAAGAGTAATCCAC+AGG | + | tig0013076:21696-21715 | Msa1353140:CDS | 40.0% | |
| AATGCAAACTTGTGCAGCAA+GGG | - | tig0013076:21728-21747 | None:intergenic | 40.0% | |
| ! | CCATCAATCCTTTTCCTACT+CGG | - | tig0013076:21917-21936 | None:intergenic | 40.0% |
| AAAGGGGAATTGCCATTCTT+TGG | - | tig0013076:22347-22366 | None:intergenic | 40.0% | |
| ATGGCAATTCCCCTTTCATA+AGG | + | tig0013076:22351-22370 | Msa1353140:intron | 40.0% | |
| AGGAGTTAACTAGACCTATC+TGG | + | tig0013076:22371-22390 | Msa1353140:intron | 40.0% | |
| GTCTTTCGTAATCACCAGAT+AGG | - | tig0013076:22388-22407 | None:intergenic | 40.0% | |
| ! | GTTTTCTTAACCAGTGAACG+AGG | - | tig0013076:22412-22431 | None:intergenic | 40.0% |
| GGTGGTGAAAACATTTGATG+TGG | + | tig0013076:22497-22516 | Msa1353140:intron | 40.0% | |
| AACATTTGATGTGGAATCCC+AGG | + | tig0013076:22506-22525 | Msa1353140:intron | 40.0% | |
| ATAAACAAACACACGGGGAT+GGG | - | tig0013076:22556-22575 | None:intergenic | 40.0% | |
| AATAAACAAACACACGGGGA+TGG | - | tig0013076:22557-22576 | None:intergenic | 40.0% | |
| ACATTTCAATGAAGGGGGAA+AGG | - | tig0013076:22780-22799 | None:intergenic | 40.0% | |
| GTGTTGAGCTGTTGATATGT+TGG | + | tig0013076:22864-22883 | Msa1353140:intron | 40.0% | |
| TCGTCTGTGCATCTGAAAAA+GGG | + | tig0013076:23029-23048 | Msa1353140:intron | 40.0% | |
| AAAAGGGTTACAAGCTAACG+AGG | + | tig0013076:23045-23064 | Msa1353140:intron | 40.0% | |
| !! | GTATCTTTAAGATGGGATGG+AGG | + | tig0013076:23078-23097 | Msa1353140:CDS | 40.0% |
| !! | CTTTTATTTGCGAGAGAGGT+AGG | + | tig0013076:23200-23219 | Msa1353140:intron | 40.0% |
| ! | GATCACAAATCTTTGAAGGC+GGG | + | tig0013076:23587-23606 | Msa1353140:CDS | 40.0% |
| ATTACTGTAACTGCTCTTGC+TGG | + | tig0013076:23694-23713 | Msa1353140:CDS | 40.0% | |
| !! | GTCAGACCTATTTTGAGGAT+TGG | + | tig0013076:23740-23759 | Msa1353140:CDS | 40.0% |
| CTCTGATTGCAATGTATTCC+TGG | + | tig0013076:23845-23864 | Msa1353140:three_prime_UTR | 40.0% | |
| ATGCAAGTGCAATTATTGCC+AGG | - | tig0013076:23866-23885 | None:intergenic | 40.0% | |
| GGTTATTCTTCTGTGGTGAA+TGG | + | tig0013076:23914-23933 | Msa1353140:three_prime_UTR | 40.0% | |
| CTGTGGTGAATGGAAAATTC+TGG | + | tig0013076:23924-23943 | Msa1353140:three_prime_UTR | 40.0% | |
| !! | TTTCCACTCCTACTTTTCAG+GGG | - | tig0013076:24159-24178 | None:intergenic | 40.0% |
| !!! | GAGTGGAAATTTTTTGGGAC+TGG | + | tig0013076:24170-24189 | Msa1353140:three_prime_UTR | 40.0% |
| TCAAAAATTGGGCGTAGCGT+AGG | + | tig0013076:18902-18921 | Msa1353140:five_prime_UTR | 45.0% | |
| ! | GGTGTTGAATGTTGATGCGA+TGG | + | tig0013076:18923-18942 | Msa1353140:exon | 45.0% |
| GAATGTTGATGCGATGGAAG+AGG | + | tig0013076:18929-18948 | Msa1353140:exon | 45.0% | |
| ! | GTTTCTTCCTTCGCTGTTTC+TGG | + | tig0013076:19164-19183 | Msa1353140:CDS | 45.0% |
| ! | TCCAAGAGAAGTGCAATCAG+CGG | - | tig0013076:19195-19214 | None:intergenic | 45.0% |
| GACGGAAGGAAAGAGTGATT+TGG | - | tig0013076:19222-19241 | None:intergenic | 45.0% | |
| AGGACTTACAAGATCAGGGA+CGG | - | tig0013076:19240-19259 | None:intergenic | 45.0% | |
| GGAGAGGACTTACAAGATCA+GGG | - | tig0013076:19244-19263 | None:intergenic | 45.0% | |
| AGGAGAGGACTTACAAGATC+AGG | - | tig0013076:19245-19264 | None:intergenic | 45.0% | |
| AAAAAGAGAGAGCAGAGGAG+AGG | - | tig0013076:19260-19279 | None:intergenic | 45.0% | |
| GAACAATCACAGTGGTCTGT+TGG | + | tig0013076:19407-19426 | Msa1353140:intron | 45.0% | |
| ATGCCTTCCATCACAAGTGT+CGG | + | tig0013076:19455-19474 | Msa1353140:intron | 45.0% | |
| !! | TATAGCACCGACACTTGTGA+TGG | - | tig0013076:19465-19484 | None:intergenic | 45.0% |
| GGAATGCCATAATCCCAATG+TGG | - | tig0013076:19559-19578 | None:intergenic | 45.0% | |
| AATGACTTATGGGGCCTCAT+TGG | + | tig0013076:19591-19610 | Msa1353140:intron | 45.0% | |
| TGACATGTTCTCGAGACACT+AGG | + | tig0013076:19685-19704 | Msa1353140:intron | 45.0% | |
| GTCATTTGGCCTGTTTGGAT+TGG | - | tig0013076:19883-19902 | None:intergenic | 45.0% | |
| TGGTTCCTCCTTCACTCTAT+AGG | - | tig0013076:20851-20870 | None:intergenic | 45.0% | |
| ! | TTACTCTGAGGGAAGGAAGA+TGG | - | tig0013076:20884-20903 | None:intergenic | 45.0% |
| GTGCCTGAGTAAACACTGAA+AGG | - | tig0013076:21373-21392 | None:intergenic | 45.0% | |
| GAATGCAAACTTGTGCAGCA+AGG | - | tig0013076:21729-21748 | None:intergenic | 45.0% | |
| GAGGTTGACTAGTGACTACA+TGG | - | tig0013076:21893-21912 | None:intergenic | 45.0% | |
| !! | AATCCTTTTCCTACTCGGTG+AGG | - | tig0013076:21912-21931 | None:intergenic | 45.0% |
| CCGAGTAGGAAAAGGATTGA+TGG | + | tig0013076:21914-21933 | Msa1353140:intron | 45.0% | |
| ! | GTTTTCACCACCAAACCACT+GGG | - | tig0013076:22489-22508 | None:intergenic | 45.0% |
| ! | TGTTTTCACCACCAAACCAC+TGG | - | tig0013076:22490-22509 | None:intergenic | 45.0% |
| TAAACAAACACACGGGGATG+GGG | - | tig0013076:22555-22574 | None:intergenic | 45.0% | |
| ! | TTTGAGTATGTGTTGGCCAC+TGG | + | tig0013076:22575-22594 | Msa1353140:intron | 45.0% |
| GTCGTCTGTGCATCTGAAAA+AGG | + | tig0013076:23028-23047 | Msa1353140:intron | 45.0% | |
| GTGCTTGACTATGCTGTCAT+TGG | + | tig0013076:23342-23361 | Msa1353140:intron | 45.0% | |
| TATCCCTAAACACCTCTCGT+CGG | + | tig0013076:23771-23790 | Msa1353140:CDS | 45.0% | |
| ATTATAAAGCTGCCGACGAG+AGG | - | tig0013076:23786-23805 | None:intergenic | 45.0% | |
| GGTGAATGGAAAATTCTGGC+AGG | + | tig0013076:23928-23947 | Msa1353140:three_prime_UTR | 45.0% | |
| AAGAGTCTCCCCTGAAAAGT+AGG | + | tig0013076:24148-24167 | Msa1353140:three_prime_UTR | 45.0% | |
| GACACCAAAGCTCTTAAGCC+AGG | - | tig0013076:19017-19036 | None:intergenic | 50.0% | |
| CAGTTGGTCACAGCATCACA+TGG | + | tig0013076:19099-19118 | Msa1353140:CDS | 50.0% | |
| ! | CCAAGAGAAGTGCAATCAGC+GGG | - | tig0013076:19194-19213 | None:intergenic | 50.0% |
| CTTACAAGATCAGGGACGGA+AGG | - | tig0013076:19236-19255 | None:intergenic | 50.0% | |
| AAGGCACATCAAAGCTCAGC+TGG | - | tig0013076:20417-20436 | None:intergenic | 50.0% | |
| GGACGGCTAAAGGCTCATTT+CGG | - | tig0013076:20759-20778 | None:intergenic | 50.0% | |
| ! | GTTTACTCAGGCACTGTAGC+TGG | + | tig0013076:21379-21398 | Msa1353140:CDS | 50.0% |
| ACTAGTCAACCTCACCGAGT+AGG | + | tig0013076:21900-21919 | Msa1353140:intron | 50.0% | |
| CAACCTCACCGAGTAGGAAA+AGG | + | tig0013076:21906-21925 | Msa1353140:intron | 50.0% | |
| GCGATCAAAACACGGCTATC+TGG | - | tig0013076:22003-22022 | None:intergenic | 50.0% | |
| GCCTCGCCTCTATGAAATCA+CGG | + | tig0013076:22312-22331 | Msa1353140:intron | 50.0% | |
| ACCGTGATTTCATAGAGGCG+AGG | - | tig0013076:22316-22335 | None:intergenic | 50.0% | |
| ACGAAAGACTCCTCGTTCAC+TGG | + | tig0013076:22399-22418 | Msa1353140:intron | 50.0% | |
| GATGTTGCAACCCAGTGGTT+TGG | + | tig0013076:22476-22495 | Msa1353140:intron | 50.0% | |
| GTGGAAAGGGTGACTACTTC+TGG | + | tig0013076:22718-22737 | Msa1353140:intron | 50.0% | |
| TGCACACTCTACAAGCAGAG+AGG | - | tig0013076:22750-22769 | None:intergenic | 50.0% | |
| GGTTACAAGCTAACGAGGCA+GGG | + | tig0013076:23050-23069 | Msa1353140:CDS | 50.0% | |
| !! | CAAGTCACCTCTGAGACAGA+AGG | + | tig0013076:23101-23120 | Msa1353140:CDS | 50.0% |
| TCTTCGTCCTTCTGTCTCAG+AGG | - | tig0013076:23111-23130 | None:intergenic | 50.0% | |
| ! | TCTTGCTGGTCTCTCTCATG+CGG | + | tig0013076:23708-23727 | Msa1353140:CDS | 50.0% |
| TCTCCCCTGAAAAGTAGGAG+TGG | + | tig0013076:24153-24172 | Msa1353140:three_prime_UTR | 50.0% | |
| CGCTCCTGGCTTAAGAGCTT+TGG | + | tig0013076:19010-19029 | Msa1353140:CDS | 55.0% | |
| !! | GGGAGTACCAGAAACAGCGA+AGG | - | tig0013076:19174-19193 | None:intergenic | 55.0% |
| ! | CCCGCTGATTGCACTTCTCT+TGG | + | tig0013076:19191-19210 | Msa1353140:CDS | 55.0% |
| ! | GCACCGACACTTGTGATGGA+AGG | - | tig0013076:19461-19480 | None:intergenic | 55.0% |
| CTCGAGACACTAGGCCTGTT+TGG | + | tig0013076:19694-19713 | Msa1353140:intron | 55.0% | |
| TCCTCGATGTTGCAACCCAG+TGG | + | tig0013076:22471-22490 | Msa1353140:intron | 55.0% | |
| ACCACTGGGTTGCAACATCG+AGG | - | tig0013076:22475-22494 | None:intergenic | 55.0% | |
| ! | GTTGCAACCCAGTGGTTTGG+TGG | + | tig0013076:22479-22498 | Msa1353140:intron | 55.0% |
| TGGAATCCCAGGTTCGAACC+AGG | + | tig0013076:22517-22536 | Msa1353140:intron | 55.0% | |
| GGAATCCCAGGTTCGAACCA+GGG | + | tig0013076:22518-22537 | Msa1353140:intron | 55.0% | |
| ATGGGGAAATGTGGTGACCC+TGG | - | tig0013076:22538-22557 | None:intergenic | 55.0% | |
| GGGTTACAAGCTAACGAGGC+AGG | + | tig0013076:23049-23068 | Msa1353140:intron | 55.0% | |
| CATTGCGGAAAGAGGATGCG+AGG | - | tig0013076:23488-23507 | None:intergenic | 55.0% | |
| !! | CTGCCGACGAGAGGTGTTTA+GGG | - | tig0013076:23777-23796 | None:intergenic | 55.0% |
| GACGATGGAATCGACGCTCC+TGG | + | tig0013076:18996-19015 | Msa1353140:CDS | 60.0% | |
| CACTGTAGCTGGAGCTCGAG+AGG | + | tig0013076:21390-21409 | Msa1353140:CDS | 60.0% | |
| GCAGCAAGGGCAAAGTCCTG+TGG | - | tig0013076:21715-21734 | None:intergenic | 60.0% | |
| ! | GGTGACCCTGGTTCGAACCT+GGG | - | tig0013076:22526-22545 | None:intergenic | 60.0% |
| ! | TGGTGACCCTGGTTCGAACC+TGG | - | tig0013076:22527-22546 | None:intergenic | 60.0% |
| CACACGGGGATGGGGAAATG+TGG | - | tig0013076:22547-22566 | None:intergenic | 60.0% | |
| !! | GCTGCCGACGAGAGGTGTTT+AGG | - | tig0013076:23778-23797 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013076 | gene | 18794 | 24274 | 18794 | ID=Msa1353140;Name=Msa1353140 |
| tig0013076 | mRNA | 18794 | 24274 | 18794 | ID=Msa1353140-mRNA-1;Parent=Msa1353140;Name=Msa1353140-mRNA-1;_AED=0.20;_eAED=0.20;_QI=148|1|1|1|0.66|0.71|7|470|308 |
| tig0013076 | exon | 18794 | 19250 | 18794 | ID=Msa1353140-mRNA-1:exon:8523;Parent=Msa1353140-mRNA-1 |
| tig0013076 | exon | 20453 | 20496 | 20453 | ID=Msa1353140-mRNA-1:exon:8524;Parent=Msa1353140-mRNA-1 |
| tig0013076 | exon | 21378 | 21455 | 21378 | ID=Msa1353140-mRNA-1:exon:8525;Parent=Msa1353140-mRNA-1 |
| tig0013076 | exon | 21693 | 21846 | 21693 | ID=Msa1353140-mRNA-1:exon:8526;Parent=Msa1353140-mRNA-1 |
| tig0013076 | exon | 23050 | 23217 | 23050 | ID=Msa1353140-mRNA-1:exon:8527;Parent=Msa1353140-mRNA-1 |
| tig0013076 | exon | 23551 | 23613 | 23551 | ID=Msa1353140-mRNA-1:exon:8528;Parent=Msa1353140-mRNA-1 |
| tig0013076 | exon | 23694 | 24274 | 23694 | ID=Msa1353140-mRNA-1:exon:8529;Parent=Msa1353140-mRNA-1 |
| tig0013076 | five_prime_UTR | 18794 | 18941 | 18794 | ID=Msa1353140-mRNA-1:five_prime_utr;Parent=Msa1353140-mRNA-1 |
| tig0013076 | CDS | 18942 | 19250 | 18942 | ID=Msa1353140-mRNA-1:cds;Parent=Msa1353140-mRNA-1 |
| tig0013076 | CDS | 20453 | 20496 | 20453 | ID=Msa1353140-mRNA-1:cds;Parent=Msa1353140-mRNA-1 |
| tig0013076 | CDS | 21378 | 21455 | 21378 | ID=Msa1353140-mRNA-1:cds;Parent=Msa1353140-mRNA-1 |
| tig0013076 | CDS | 21693 | 21846 | 21693 | ID=Msa1353140-mRNA-1:cds;Parent=Msa1353140-mRNA-1 |
| tig0013076 | CDS | 23050 | 23217 | 23050 | ID=Msa1353140-mRNA-1:cds;Parent=Msa1353140-mRNA-1 |
| tig0013076 | CDS | 23551 | 23613 | 23551 | ID=Msa1353140-mRNA-1:cds;Parent=Msa1353140-mRNA-1 |
| tig0013076 | CDS | 23694 | 23804 | 23694 | ID=Msa1353140-mRNA-1:cds;Parent=Msa1353140-mRNA-1 |
| tig0013076 | three_prime_UTR | 23805 | 24274 | 23805 | ID=Msa1353140-mRNA-1:three_prime_utr;Parent=Msa1353140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
