AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1357330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357330 MtrunA17_Chr4g0057151 100.000 61 0 0 1 61 1 61 4.56e-38 125
Msa1357330 MtrunA17_Chr8g0351041 87.500 64 8 0 1 64 1 64 7.17e-35 115
Msa1357330 MtrunA17_Chr8g0351031 87.500 64 8 0 1 64 1 64 1.60e-34 116
Msa1357330 MtrunA17_Chr7g0246431 90.000 60 6 0 1 60 1 60 9.93e-34 114
Msa1357330 MtrunA17_Chr4g0061671 73.846 65 17 0 1 65 1 65 4.43e-30 103
Msa1357330 MtrunA17_Chr7g0246381 75.806 62 15 0 1 62 1 62 6.12e-30 100
Msa1357330 MtrunA17_Chr3g0122251 76.923 65 15 0 1 65 1 65 6.21e-30 105
Msa1357330 MtrunA17_Chr7g0220111 75.385 65 16 0 1 65 1 65 6.98e-30 105
Msa1357330 MtrunA17_Chr6g0455511 75.385 65 16 0 1 65 1 65 1.63e-29 104
Msa1357330 MtrunA17_Chr5g0420091 72.308 65 18 0 1 65 1 65 1.94e-29 103
Msa1357330 MtrunA17_Chr1g0173161 78.333 60 13 0 1 60 1 60 7.45e-29 97.8
Msa1357330 MtrunA17_Chr4g0061691 73.846 65 17 0 1 65 1 65 7.66e-29 102
Msa1357330 MtrunA17_Chr3g0097101 75.410 61 15 0 1 61 16 76 1.37e-28 101
Msa1357330 MtrunA17_Chr8g0351051 79.661 59 12 0 1 59 1 59 1.53e-28 101
Msa1357330 MtrunA17_Chr8g0377561 77.586 58 13 0 1 58 1 58 2.02e-28 97.4
Msa1357330 MtrunA17_Chr8g0380021 71.642 67 16 1 3 66 19 85 2.17e-28 101
Msa1357330 MtrunA17_Chr3g0077501 75.410 61 15 0 1 61 1 61 2.36e-28 100
Msa1357330 MtrunA17_Chr2g0308251 75.410 61 15 0 1 61 1 61 2.76e-28 96.7
Msa1357330 MtrunA17_Chr8g0366231 72.308 65 18 0 1 65 1 65 7.55e-28 99.8
Msa1357330 MtrunA17_Chr2g0284911 76.271 59 14 0 3 61 18 76 1.04e-27 99.8
Msa1357330 MtrunA17_Chr2g0279821 73.770 61 16 0 1 61 1 61 3.36e-27 98.2
Msa1357330 MtrunA17_Chr6g0474371 67.692 65 21 0 1 65 1 65 1.01e-26 95.5
Msa1357330 MtrunA17_Chr5g0427921 66.667 60 20 0 1 60 1 60 1.25e-26 91.7
Msa1357330 MtrunA17_Chr4g0020221 75.000 60 15 0 1 60 1 60 2.57e-26 96.3
Msa1357330 MtrunA17_Chr3g0142191 69.355 62 19 0 1 62 1 62 3.86e-26 95.1
Msa1357330 MtrunA17_Chr7g0220121 68.750 64 20 0 1 64 1 64 6.93e-26 95.1
Msa1357330 MtrunA17_Chr5g0420081 67.692 65 21 0 1 65 1 65 1.22e-25 94.0
Msa1357330 MtrunA17_Chr1g0204111 72.131 61 17 0 1 61 17 77 1.35e-25 94.4
Msa1357330 MtrunA17_Chr5g0412271 66.667 69 20 1 1 66 1 69 6.15e-25 92.0
Msa1357330 MtrunA17_Chr5g0412461 66.667 69 20 1 1 66 1 69 6.49e-25 92.0
Msa1357330 MtrunA17_Chr4g0018421 62.500 64 24 0 1 64 1 64 8.30e-25 90.9
Msa1357330 MtrunA17_Chr3g0125241 64.516 62 22 0 1 62 26 87 1.75e-24 90.1
Msa1357330 MtrunA17_Chr5g0427401 65.574 61 21 0 1 61 1 61 3.58e-24 89.7
Msa1357330 MtrunA17_Chr4g0049541 67.213 61 20 0 1 61 1 61 1.52e-23 88.2
Msa1357330 MtrunA17_Chr5g0411691 62.295 61 23 0 1 61 1 61 5.93e-23 87.0
Msa1357330 MtrunA17_Chr4g0049901 67.213 61 20 0 1 61 27 87 7.03e-23 86.7
Msa1357330 MtrunA17_Chr1g0166611 83.333 48 8 0 13 60 17 64 8.00e-23 84.0
Msa1357330 MtrunA17_Chr5g0425191 65.517 58 20 0 1 58 1 58 2.12e-22 82.0
Msa1357330 MtrunA17_Chr1g0159661 58.065 62 26 0 1 62 1 62 3.16e-22 84.0
Msa1357330 MtrunA17_Chr3g0134451 63.077 65 24 0 1 65 1 65 3.34e-22 86.3
Msa1357330 MtrunA17_Chr4g0044071 63.793 58 21 0 1 58 1 58 4.02e-22 81.6
Msa1357330 MtrunA17_Chr5g0404951 64.912 57 20 0 1 57 1 57 2.30e-21 82.8
Msa1357330 MtrunA17_Chr1g0164791 61.290 62 24 0 1 62 1 62 9.22e-20 78.6
Msa1357330 MtrunA17_Chr1g0208561 57.627 59 25 0 3 61 10 68 4.29e-18 73.9
Msa1357330 MtrunA17_Chr3g0089141 57.627 59 25 0 3 61 10 68 4.87e-18 73.9
Msa1357330 MtrunA17_Chr2g0325971 61.818 55 21 0 3 57 10 64 2.58e-17 72.0
Msa1357330 MtrunA17_Chr1g0208581 63.636 55 20 0 3 57 10 64 4.24e-17 71.6
Msa1357330 MtrunA17_Chr3g0099411 61.818 55 21 0 3 57 10 64 4.70e-17 71.2
Msa1357330 MtrunA17_Chr8g0379021 53.333 60 28 0 3 62 13 72 5.36e-17 70.1
Msa1357330 MtrunA17_Chr1g0149391 57.627 59 25 0 3 61 10 68 6.12e-17 71.2
Msa1357330 MtrunA17_Chr1g0206721 57.627 59 25 0 3 61 10 68 6.80e-17 71.2
Msa1357330 MtrunA17_Chr8g0355091 57.627 59 25 0 3 61 10 68 8.48e-17 70.9
Msa1357330 MtrunA17_Chr1g0206701 57.627 59 25 0 3 61 10 68 8.57e-17 70.9
Msa1357330 MtrunA17_Chr2g0333981 53.226 62 29 0 1 62 11 72 8.61e-17 69.7
Msa1357330 MtrunA17_Chr2g0292791 63.636 55 20 0 3 57 10 64 1.26e-16 70.5
Msa1357330 MtrunA17_Chr3g0099421 63.636 55 20 0 3 57 35 89 2.45e-16 70.1
Msa1357330 MtrunA17_Chr2g0300421 54.237 59 27 0 3 61 10 68 2.55e-16 68.6
Msa1357330 MtrunA17_Chr5g0419601 57.627 59 25 0 3 61 10 68 3.31e-16 69.3
Msa1357330 MtrunA17_Chr1g0187361 61.818 55 21 0 3 57 10 64 3.45e-16 69.3
Msa1357330 MtrunA17_Chr1g0188671 61.818 55 21 0 3 57 48 102 4.10e-16 69.7
Msa1357330 MtrunA17_Chr3g0111841 57.407 54 23 0 8 61 2 55 5.50e-16 65.1
Msa1357330 MtrunA17_Chr2g0317481 60.000 55 22 0 3 57 10 64 6.07e-16 68.6
Msa1357330 MtrunA17_Chr2g0317451 60.000 55 22 0 3 57 10 64 7.33e-16 68.6
Msa1357330 MtrunA17_Chr8g0376821 54.386 57 26 0 1 57 1 57 7.60e-16 67.4
Msa1357330 MtrunA17_Chr4g0018951 72.093 43 12 0 15 57 25 67 1.17e-15 66.6
Msa1357330 MtrunA17_Chr5g0417661 52.830 53 25 0 1 53 56 108 1.29e-15 65.5
Msa1357330 MtrunA17_Chr1g0169761 54.386 57 26 0 1 57 1 57 1.35e-15 66.6
Msa1357330 MtrunA17_Chr1g0175611 54.386 57 26 0 1 57 1 57 1.37e-15 66.6
Msa1357330 MtrunA17_Chr1g0180591 52.632 57 27 0 1 57 1 57 1.50e-15 66.6
Msa1357330 MtrunA17_Chr8g0357771 52.459 61 29 0 1 61 1 61 1.57e-15 66.6
Msa1357330 MtrunA17_Chr5g0422421 60.000 55 22 0 3 57 10 64 1.67e-15 67.4
Msa1357330 MtrunA17_Chr5g0422941 60.000 55 22 0 3 57 10 64 2.54e-15 67.0
Msa1357330 MtrunA17_Chr1g0206991 56.364 55 24 0 3 57 10 64 3.78e-15 65.5
Msa1357330 MtrunA17_Chr4g0060841 56.604 53 23 0 1 53 1 53 3.78e-15 67.4
Msa1357330 MtrunA17_Chr1g0175601 54.386 57 26 0 1 57 1 57 4.03e-15 65.5
Msa1357330 MtrunA17_Chr4g0052081 47.541 61 32 0 1 61 1 61 1.23e-14 64.3
Msa1357330 MtrunA17_Chr4g0074101 50.877 57 28 0 1 57 1 57 1.35e-14 64.3
Msa1357330 MtrunA17_Chr4g0052061 45.902 61 33 0 1 61 1 61 2.27e-14 63.2
Msa1357330 MtrunA17_Chr1g0187351 61.702 47 18 0 11 57 1 47 4.34e-14 60.1
Msa1357330 MtrunA17_Chr3g0089151 52.727 55 26 0 3 57 10 64 6.98e-14 61.2
Msa1357330 MtrunA17_Chr2g0300441 50.877 57 28 0 5 61 12 68 2.04e-13 62.0
Msa1357330 MtrunA17_Chr3g0119901 50.909 55 27 0 3 57 10 64 5.08e-13 60.5
Msa1357330 MtrunA17_Chr1g0206691 61.702 47 18 0 11 57 1 47 6.11e-13 60.5
Msa1357330 MtrunA17_Chr8g0356071 45.902 61 33 0 1 61 1 61 7.94e-13 59.3
Msa1357330 MtrunA17_Chr3g0085241 50.909 55 27 0 3 57 42 96 1.31e-12 59.7
Msa1357330 MtrunA17_Chr4g0071601 56.250 48 21 0 15 62 25 72 3.11e-12 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357330 AT4G11880.2 86.154 65 9 0 1 65 1 65 9.41e-35 116
Msa1357330 AT4G11880.3 86.154 65 9 0 1 65 1 65 9.41e-35 116
Msa1357330 AT4G11880.4 86.154 65 9 0 1 65 1 65 1.36e-34 117
Msa1357330 AT4G11880.1 86.154 65 9 0 1 65 1 65 1.36e-34 117
Msa1357330 AT2G45660.2 85.246 61 9 0 1 61 1 61 3.76e-33 111
Msa1357330 AT2G45660.1 85.246 61 9 0 1 61 1 61 1.92e-32 111
Msa1357330 AT4G22950.2 85.246 61 9 0 1 61 1 61 2.15e-32 109
Msa1357330 AT4G22950.3 85.246 61 9 0 1 61 1 61 7.45e-32 109
Msa1357330 AT4G22950.1 85.246 61 9 0 1 61 1 61 7.45e-32 109
Msa1357330 AT1G24260.2 77.778 63 14 0 1 63 1 63 6.91e-30 105
Msa1357330 AT5G62165.14 76.667 60 14 0 1 60 1 60 1.28e-29 100
Msa1357330 AT5G62165.6 75.410 61 15 0 1 61 1 61 1.42e-29 102
Msa1357330 AT5G62165.9 75.410 61 15 0 1 61 1 61 1.42e-29 102
Msa1357330 AT5G62165.7 75.410 61 15 0 1 61 1 61 1.42e-29 102
Msa1357330 AT5G62165.8 75.410 61 15 0 1 61 1 61 1.42e-29 102
Msa1357330 AT5G62165.13 75.410 61 15 0 1 61 1 61 1.42e-29 102
Msa1357330 AT5G62165.17 75.410 61 15 0 1 61 1 61 1.53e-29 102
Msa1357330 AT5G62165.12 75.410 61 15 0 1 61 1 61 1.53e-29 102
Msa1357330 AT5G62165.11 75.410 61 15 0 1 61 1 61 1.53e-29 102
Msa1357330 AT5G15800.1 75.385 65 16 0 1 65 1 65 1.61e-29 104
Msa1357330 AT2G03710.3 75.806 62 15 0 1 62 1 62 1.76e-29 102
Msa1357330 AT5G15800.2 75.385 65 16 0 1 65 1 65 2.59e-29 104
Msa1357330 AT2G45650.1 72.464 69 16 1 1 66 1 69 5.90e-29 103
Msa1357330 AT3G02310.2 73.846 65 17 0 1 65 1 65 6.15e-29 102
Msa1357330 AT5G62165.10 75.410 61 15 0 1 61 1 61 6.79e-29 101
Msa1357330 AT5G62165.4 75.410 61 15 0 1 61 1 61 6.79e-29 101
Msa1357330 AT4G09960.2 69.565 69 18 1 1 66 1 69 7.23e-29 102
Msa1357330 AT2G03710.2 75.806 62 15 0 1 62 1 62 8.27e-29 102
Msa1357330 AT5G62165.3 75.410 61 15 0 1 61 1 61 8.60e-29 101
Msa1357330 AT5G62165.1 75.410 61 15 0 1 61 1 61 8.60e-29 101
Msa1357330 AT5G62165.2 75.410 61 15 0 1 61 1 61 8.60e-29 101
Msa1357330 AT2G03710.1 75.806 62 15 0 1 62 1 62 9.00e-29 102
Msa1357330 AT4G09960.1 69.565 69 18 1 1 66 1 69 9.19e-29 102
Msa1357330 AT4G09960.6 69.565 69 18 1 1 66 2 70 9.49e-29 102
Msa1357330 AT4G09960.5 69.565 69 18 1 1 66 11 79 1.12e-28 102
Msa1357330 AT4G09960.3 69.565 69 18 1 1 66 27 95 2.36e-28 101
Msa1357330 AT4G18960.1 77.966 59 13 0 3 61 19 77 3.89e-28 101
Msa1357330 AT5G60910.1 72.308 65 18 0 1 65 1 65 4.01e-28 100
Msa1357330 AT1G69120.2 72.308 65 18 0 1 65 1 65 4.72e-28 100
Msa1357330 AT4G09960.4 69.565 69 18 1 1 66 96 164 6.76e-28 102
Msa1357330 AT2G42830.1 74.576 59 15 0 3 61 18 76 7.44e-28 100
Msa1357330 AT2G42830.2 74.576 59 15 0 3 61 18 76 7.59e-28 100
Msa1357330 AT3G58780.1 74.576 59 15 0 3 61 18 76 8.54e-28 100
Msa1357330 AT3G58780.5 74.576 59 15 0 3 61 24 82 9.84e-28 100
Msa1357330 AT1G69120.1 72.308 65 18 0 1 65 1 65 1.02e-27 100
Msa1357330 AT3G58780.4 74.576 59 15 0 3 61 18 76 1.35e-27 100
Msa1357330 AT3G58780.3 74.576 59 15 0 3 61 18 76 1.48e-27 100
Msa1357330 AT1G24260.3 77.778 63 14 0 1 63 1 63 1.57e-27 99.4
Msa1357330 AT3G58780.2 74.138 58 15 0 3 60 18 75 2.65e-27 98.6
Msa1357330 AT3G57230.2 72.131 61 17 0 1 61 1 61 4.06e-27 95.9
Msa1357330 AT1G26310.1 72.308 65 18 0 1 65 1 65 5.61e-27 98.2
Msa1357330 AT3G02310.1 73.846 65 17 0 1 65 1 65 9.16e-27 97.4
Msa1357330 AT1G24260.1 77.778 63 14 0 1 63 1 63 9.16e-27 97.4
Msa1357330 AT3G30260.1 69.231 65 20 0 1 65 1 65 1.44e-26 97.1
Msa1357330 AT3G57230.1 72.131 61 17 0 1 61 1 61 2.24e-26 96.3
Msa1357330 AT3G57230.4 72.131 61 17 0 1 61 1 61 2.24e-26 96.3
Msa1357330 AT3G57390.3 72.881 59 16 0 1 59 1 59 3.51e-26 95.5
Msa1357330 AT3G61120.1 76.271 59 14 0 1 59 1 59 4.05e-26 95.9
Msa1357330 AT3G57390.1 72.881 59 16 0 1 59 1 59 6.05e-26 95.5
Msa1357330 AT5G13790.1 75.000 60 15 0 1 60 1 60 1.52e-25 94.7
Msa1357330 AT2G14210.1 66.667 63 21 0 1 63 1 63 1.53e-25 94.0
Msa1357330 AT5G51870.2 71.667 60 17 0 1 60 1 60 1.56e-25 92.4
Msa1357330 AT5G13790.2 75.000 60 15 0 1 60 1 60 1.65e-25 94.7
Msa1357330 AT2G14210.2 66.667 63 21 0 1 63 1 63 1.90e-25 94.0
Msa1357330 AT5G51870.5 71.667 60 17 0 1 60 24 83 3.48e-25 92.0
Msa1357330 AT5G51870.1 71.667 60 17 0 1 60 1 60 4.00e-25 92.4
Msa1357330 AT5G51860.2 68.852 61 19 0 1 61 1 61 5.16e-25 92.0
Msa1357330 AT3G54340.1 63.077 65 24 0 1 65 1 65 5.56e-25 92.4
Msa1357330 AT5G51870.4 71.667 60 17 0 1 60 1 60 6.20e-25 92.0
Msa1357330 AT5G51860.1 68.852 61 19 0 1 61 1 61 6.56e-25 91.7
Msa1357330 AT5G51870.3 71.667 60 17 0 1 60 11 70 8.03e-25 92.0
Msa1357330 AT4G37940.3 67.213 61 20 0 1 61 1 61 9.81e-25 90.5
Msa1357330 AT2G22540.3 66.667 69 20 1 1 66 1 69 1.05e-24 92.0
Msa1357330 AT2G22540.1 66.667 69 20 1 1 66 1 69 1.05e-24 92.0
Msa1357330 AT4G37940.4 67.213 61 20 0 1 61 1 61 1.20e-24 91.3
Msa1357330 AT4G37940.1 67.213 61 20 0 1 61 1 61 1.47e-24 91.3
Msa1357330 AT5G10140.2 67.692 65 21 0 1 65 1 65 1.88e-24 89.4
Msa1357330 AT1G71692.1 62.500 64 24 0 1 64 1 64 2.19e-24 90.5
Msa1357330 AT5G10140.4 67.692 65 21 0 1 65 1 65 2.22e-24 89.7
Msa1357330 AT5G10140.1 67.692 65 21 0 1 65 1 65 2.54e-24 90.1
Msa1357330 AT5G10140.3 67.692 65 21 0 1 65 1 65 3.51e-24 89.4
Msa1357330 AT4G24540.1 70.000 60 18 0 1 60 1 60 2.09e-23 88.2
Msa1357330 AT5G65070.4 61.538 65 25 0 1 65 1 65 3.04e-23 85.9
Msa1357330 AT5G20240.2 62.295 61 23 0 1 61 1 61 5.61e-23 85.5
Msa1357330 AT5G65070.1 61.538 65 25 0 1 65 1 65 9.27e-23 85.9
Msa1357330 AT5G65070.5 61.538 65 25 0 1 65 1 65 1.43e-22 85.9
Msa1357330 AT5G65070.2 61.538 65 25 0 1 65 1 65 2.01e-22 85.9
Msa1357330 AT2G22630.1 63.934 61 22 0 1 61 1 61 2.57e-22 85.5
Msa1357330 AT2G22630.2 63.934 61 22 0 1 61 1 61 2.57e-22 85.5
Msa1357330 AT2G22540.2 62.121 66 23 1 1 66 1 64 6.07e-22 84.7
Msa1357330 AT5G23260.3 64.516 62 22 0 1 62 1 62 2.66e-21 83.2
Msa1357330 AT5G65070.3 64.407 59 21 0 1 59 1 59 3.30e-21 82.8
Msa1357330 AT5G23260.2 64.516 62 22 0 1 62 1 62 8.41e-21 82.0
Msa1357330 AT5G23260.1 64.516 62 22 0 1 62 17 78 2.53e-20 80.9
Msa1357330 AT5G65050.2 55.385 65 29 0 1 65 1 65 2.77e-20 79.0
Msa1357330 AT5G23260.4 64.516 62 22 0 1 62 17 78 2.95e-20 80.9
Msa1357330 AT5G65080.3 58.462 65 27 0 1 65 8 72 2.99e-20 79.3
Msa1357330 AT5G65050.1 55.385 65 29 0 1 65 1 65 3.25e-20 79.0
Msa1357330 AT5G65050.5 55.385 65 29 0 1 65 1 65 3.90e-20 79.0
Msa1357330 AT5G65050.3 55.385 65 29 0 1 65 1 65 4.87e-20 79.0
Msa1357330 AT1G22130.1 60.938 64 25 0 1 64 1 64 1.10e-19 80.1
Msa1357330 AT1G77980.1 59.375 64 26 0 1 64 1 64 2.35e-19 79.3
Msa1357330 AT5G20240.1 62.295 61 23 0 1 61 1 61 4.14e-19 76.6
Msa1357330 AT5G65060.2 52.308 65 31 0 1 65 1 65 7.40e-19 75.5
Msa1357330 AT5G65080.2 61.017 59 23 0 1 59 8 66 7.88e-19 75.9
Msa1357330 AT5G65060.3 52.308 65 31 0 1 65 1 65 9.26e-19 75.5
Msa1357330 AT5G65060.1 52.308 65 31 0 1 65 1 65 9.56e-19 75.5
Msa1357330 AT1G77950.3 53.125 64 30 0 1 64 1 64 3.72e-18 75.1
Msa1357330 AT1G77950.2 53.125 64 30 0 1 64 1 64 3.72e-18 75.1
Msa1357330 AT1G77950.1 53.125 64 30 0 1 64 1 64 3.72e-18 75.1
Msa1357330 AT1G77950.4 53.125 64 30 0 1 64 1 64 3.72e-18 75.1
Msa1357330 AT1G31140.1 53.226 62 29 0 1 62 1 62 6.97e-18 73.6
Msa1357330 AT1G31140.2 53.226 62 29 0 1 62 1 62 7.05e-18 73.6
Msa1357330 AT4G37435.1 52.308 65 31 0 1 65 1 65 1.02e-17 72.8
Msa1357330 AT1G01530.1 61.818 55 21 0 3 57 8 62 1.84e-17 73.2
Msa1357330 AT4G36590.1 59.677 62 25 0 3 64 8 69 1.24e-16 70.9
Msa1357330 AT1G77080.12 59.375 64 26 0 1 64 1 64 1.41e-16 68.9
Msa1357330 AT1G77080.11 58.462 65 27 0 1 65 1 65 2.38e-16 68.9
Msa1357330 AT1G77080.5 58.462 65 27 0 1 65 1 65 2.48e-16 68.9
Msa1357330 AT1G77080.2 59.375 64 26 0 1 64 1 64 3.12e-16 68.9
Msa1357330 AT1G77080.4 58.462 65 27 0 1 65 1 65 3.83e-16 68.9
Msa1357330 AT1G18750.3 53.226 62 29 0 1 62 1 62 5.90e-16 70.1
Msa1357330 AT1G18750.1 53.226 62 29 0 1 62 1 62 6.25e-16 70.1
Msa1357330 AT1G18750.4 53.226 62 29 0 1 62 1 62 6.31e-16 70.1
Msa1357330 AT1G77080.8 58.462 65 27 0 1 65 1 65 8.41e-16 68.6
Msa1357330 AT1G72350.1 54.098 61 28 0 3 63 44 104 2.54e-15 67.0
Msa1357330 AT2G03060.2 56.604 53 23 0 1 53 1 53 2.71e-15 68.2
Msa1357330 AT2G24840.1 55.932 59 26 0 3 61 64 122 4.13e-15 67.0
Msa1357330 AT3G66656.1 52.632 57 27 0 1 57 1 57 5.49e-15 65.5
Msa1357330 AT5G60440.1 60.000 55 22 0 3 57 8 62 6.09e-15 67.0
Msa1357330 AT1G65360.1 54.545 55 25 0 3 57 8 62 1.11e-14 65.5
Msa1357330 AT2G34440.1 47.541 61 32 0 1 61 1 61 1.25e-14 64.3
Msa1357330 AT3G04100.1 47.368 57 30 0 5 61 17 73 7.58e-14 63.2
Msa1357330 AT2G03060.3 56.604 53 23 0 1 53 1 53 1.36e-13 63.5
Msa1357330 AT2G03060.7 56.604 53 23 0 1 53 1 53 1.36e-13 63.5
Msa1357330 AT2G03060.1 56.604 53 23 0 1 53 1 53 1.36e-13 63.5
Msa1357330 AT1G29962.1 49.153 59 30 0 3 61 9 67 1.50e-13 62.0
Msa1357330 AT1G28460.1 52.632 57 27 0 5 61 11 67 1.82e-13 61.6
Msa1357330 AT1G69540.2 50.943 53 26 0 1 53 1 53 2.75e-12 59.7
Msa1357330 AT1G69540.1 50.943 53 26 0 1 53 1 53 4.08e-12 59.3
Msa1357330 AT1G47760.1 47.368 57 30 0 1 57 1 57 1.24e-11 56.6
Msa1357330 AT2G26320.1 47.541 61 32 0 1 61 17 77 1.45e-11 55.1
Msa1357330 AT1G28450.1 45.763 59 32 0 3 61 9 67 2.79e-11 55.8

Find 25 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTTATTATTCATCAAAA+TGG 0.252811 tig0016062:+68157 Msa1357330:exon
CTGACAAATAATTAATATTC+TGG 0.288192 tig0016062:-67986 None:intergenic
AAGAAATGGACTGCTTAAAA+AGG 0.324915 tig0016062:+68247 Msa1357330:CDS
CAGAATATTAATTATTTGTC+AGG 0.350759 tig0016062:+67987 Msa1357330:five_prime_UTR
AAGATAATACCTTGACATCT+AGG 0.389908 tig0016062:+67807 None:intergenic
ACTTTCTCAAAGAGAAGAAA+TGG 0.422858 tig0016062:+68233 Msa1357330:CDS
AAATTAAACATACCTTGAAC+TGG 0.446342 tig0016062:-68348 None:intergenic
CGAGATATGAACTCTCTTTG+AGG 0.457521 tig0016062:-68130 None:intergenic
TCTATGAGTTCTCCAGTTCA+AGG 0.460917 tig0016062:+68336 Msa1357330:CDS
GGTAGGTTACATAGGGTGGA+TGG 0.469866 tig0016062:+67828 Msa1357330:five_prime_UTR
ACTCACTGCAATCAATCAAC+TGG 0.471886 tig0016062:+67854 Msa1357330:five_prime_UTR
CTCATCGTCTTCTCTACCAC+TGG 0.481417 tig0016062:+68308 Msa1357330:CDS
GTAGGTTACATAGGGTGGAT+GGG 0.503921 tig0016062:+67829 Msa1357330:five_prime_UTR
GAGATATGAACTCTCTTTGA+GGG 0.517551 tig0016062:-68129 None:intergenic
AATATTCTGGAAGAAAAGAA+TGG 0.523738 tig0016062:-67973 None:intergenic
GACATCTAGGTAGGTTACAT+AGG 0.523759 tig0016062:+67820 Msa1357330:five_prime_UTR
TAGGTTACATAGGGTGGATG+GGG 0.548295 tig0016062:+67830 Msa1357330:five_prime_UTR
ACATCTAGGTAGGTTACATA+GGG 0.570043 tig0016062:+67821 Msa1357330:five_prime_UTR
TCTAGGTAGGTTACATAGGG+TGG 0.600786 tig0016062:+67824 Msa1357330:five_prime_UTR
TAATACCTTGACATCTAGGT+AGG 0.603612 tig0016062:+67811 None:intergenic
ACAAAGCACTGAAAGTTCAA+AGG 0.613392 tig0016062:-68270 None:intergenic
TTATTCATCAAAATGGTGAG+AGG 0.636658 tig0016062:+68164 Msa1357330:exon
TCATCGTCTTCTCTACCACT+GGG 0.652904 tig0016062:+68309 Msa1357330:CDS
AGATATGAACTCTCTTTGAG+GGG 0.683636 tig0016062:-68128 None:intergenic
GAACTCATAGAGTTTCCCAG+TGG 0.782754 tig0016062:-68324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTAATTTAAATT+TGG + tig0016062:70658-70677 Msa1357330:intron 0.0%
!! AAATAAAAATAAAACTGATT+TGG + tig0016062:68621-68640 Msa1357330:intron 10.0%
!! CAATTATAATATAAGTATAT+GGG - tig0016062:69342-69361 None:intergenic 10.0%
!! TCAATTATAATATAAGTATA+TGG - tig0016062:69343-69362 None:intergenic 10.0%
!! CAAAATTATATATAATTTAC+CGG - tig0016062:69956-69975 None:intergenic 10.0%
!! ATATATAATAAAAAAGATCA+AGG + tig0016062:71459-71478 Msa1357330:intron 10.0%
!!! CTATATTTTTTTTTTTTTTG+AGG - tig0016062:71638-71657 None:intergenic 10.0%
!! TTTGTTAAATACTATAAAAT+CGG - tig0016062:71679-71698 None:intergenic 10.0%
!!! AATTATAATATTTTGGAAAG+AGG - tig0016062:69369-69388 None:intergenic 15.0%
!! AAAAAATAGTAGATTGTAAT+TGG + tig0016062:70681-70700 Msa1357330:intron 15.0%
!! AAAAATAGTAGATTGTAATT+GGG + tig0016062:70682-70701 Msa1357330:intron 15.0%
!!! TATATTTTAATATAGTCTTC+AGG - tig0016062:71026-71045 None:intergenic 15.0%
!!! TCAAATTTTAGATATTAGTT+AGG - tig0016062:72429-72448 None:intergenic 15.0%
!! TAATATATTACAAAAGTTGA+GGG - tig0016062:72660-72679 None:intergenic 15.0%
!! ATAATATATTACAAAAGTTG+AGG - tig0016062:72661-72680 None:intergenic 15.0%
!! CTGACAAATAATTAATATTC+TGG - tig0016062:67989-68008 None:intergenic 20.0%
!! CAGAATATTAATTATTTGTC+AGG + tig0016062:67987-68006 Msa1357330:five_prime_UTR 20.0%
!! AAGAGTGAATAATTAACATA+AGG + tig0016062:68703-68722 Msa1357330:intron 20.0%
!! AGAGTGAATAATTAACATAA+GGG + tig0016062:68704-68723 Msa1357330:intron 20.0%
!! TAATTAACATAAGGGTTTAA+TGG + tig0016062:68712-68731 Msa1357330:intron 20.0%
!! GATTAAATATCTTGCTAATT+AGG + tig0016062:68805-68824 Msa1357330:intron 20.0%
!!! CTTTTCCTATTTTTAATTTG+TGG + tig0016062:68897-68916 Msa1357330:intron 20.0%
!! TGAATCCACAAATTAAAAAT+AGG - tig0016062:68905-68924 None:intergenic 20.0%
!! TTGTATCATATTCTAAACTT+TGG - tig0016062:68938-68957 None:intergenic 20.0%
!!! TTGAATCAAACTTTTAGTAT+AGG + tig0016062:68992-69011 Msa1357330:intron 20.0%
!! TAATATAAGTATATGGGTTT+AGG - tig0016062:69336-69355 None:intergenic 20.0%
!!! GGTTGTCAATTATAATATTT+TGG - tig0016062:69376-69395 None:intergenic 20.0%
!! TATTATAATTGACAACCAAT+TGG + tig0016062:69379-69398 Msa1357330:intron 20.0%
!! ATTATAATTGACAACCAATT+GGG + tig0016062:69380-69399 Msa1357330:intron 20.0%
!! AAAATAGTACTAGTAATATC+TGG - tig0016062:69449-69468 None:intergenic 20.0%
!! AAAATCTATTTAAACCAACA+AGG - tig0016062:69561-69580 None:intergenic 20.0%
!! TTGAAGTAATATCAAAATCT+TGG + tig0016062:69732-69751 Msa1357330:intron 20.0%
!! TGAAGTAATATCAAAATCTT+GGG + tig0016062:69733-69752 Msa1357330:intron 20.0%
!!! TATGTCATAGACTTATTTTT+AGG + tig0016062:71500-71519 Msa1357330:intron 20.0%
!!! TATCAAACTTTTAATGATGT+TGG - tig0016062:71536-71555 None:intergenic 20.0%
!!! TTTTTTTTTGAGGTAGATAT+TGG - tig0016062:71628-71647 None:intergenic 20.0%
!!! CCTATTTTTTTAAATAGTGA+AGG - tig0016062:71847-71866 None:intergenic 20.0%
!! CCTTCACTATTTAAAAAAAT+AGG + tig0016062:71844-71863 Msa1357330:intron 20.0%
!! TATATTATTATGGATCAGTT+TGG - tig0016062:72079-72098 None:intergenic 20.0%
!! AATTAAAGCACGTATATATA+TGG + tig0016062:72451-72470 Msa1357330:intron 20.0%
!! AACTAAATAGTAACTATAAC+TGG + tig0016062:72543-72562 Msa1357330:intron 20.0%
!!! TTTTTTTTTTTTTGGAGAGT+AGG - tig0016062:72587-72606 None:intergenic 20.0%
!!! ACAAATACTCACTTTTTAAA+GGG - tig0016062:72637-72656 None:intergenic 20.0%
!! AACGACACATTTAAAAATTT+AGG - tig0016062:72691-72710 None:intergenic 20.0%
!! ATAATAGCAAAACTTTTGCT+AGG + tig0016062:67916-67935 Msa1357330:five_prime_UTR 25.0%
!! TAATAGCAAAACTTTTGCTA+GGG + tig0016062:67917-67936 Msa1357330:five_prime_UTR 25.0%
!! AATATTCTGGAAGAAAAGAA+TGG - tig0016062:67976-67995 None:intergenic 25.0%
!! TTGTTTTCCAAAATAGAAAG+TGG - tig0016062:68034-68053 None:intergenic 25.0%
! GTGCTTATTATTCATCAAAA+TGG + tig0016062:68157-68176 Msa1357330:exon 25.0%
! AAATTAAACATACCTTGAAC+TGG - tig0016062:68351-68370 None:intergenic 25.0%
!!! TAATTTTGAGAACCCTTTTA+TGG + tig0016062:68481-68500 Msa1357330:intron 25.0%
!! CAATGATCTTTTCCATAAAA+GGG - tig0016062:68496-68515 None:intergenic 25.0%
!! TCAATGATCTTTTCCATAAA+AGG - tig0016062:68497-68516 None:intergenic 25.0%
! GTTAAATATGCCAACTATAA+AGG + tig0016062:68643-68662 Msa1357330:intron 25.0%
!!! TTAATGGATTATAGCATCAA+AGG + tig0016062:68728-68747 Msa1357330:intron 25.0%
!!! TTAATGGATTATAGCATCAA+AGG + tig0016062:68728-68747 Msa1357330:intron 25.0%
! TAAATATCTTGCTAATTAGG+TGG + tig0016062:68808-68827 Msa1357330:intron 25.0%
! AAATATCTTGCTAATTAGGT+GGG + tig0016062:68809-68828 Msa1357330:intron 25.0%
! AGTTATAATTCTGCTTGAAA+AGG + tig0016062:69126-69145 Msa1357330:intron 25.0%
!! AATGCAGTTTTCTTGATTAT+AGG + tig0016062:69166-69185 Msa1357330:intron 25.0%
! CAAATGCAATACATGTATTA+TGG - tig0016062:69217-69236 None:intergenic 25.0%
! TGAATATGGGTTTAGATTTA+GGG - tig0016062:69306-69325 None:intergenic 25.0%
! TTAATCTAAAGAATCCCAAT+TGG - tig0016062:69397-69416 None:intergenic 25.0%
! AAAAAAAAACTTTAAGCGAC+GGG - tig0016062:69625-69644 None:intergenic 25.0%
! CAAAAAAAAACTTTAAGCGA+CGG - tig0016062:69626-69645 None:intergenic 25.0%
!!! TTAAAGTTTTTTTTTGGCAG+TGG + tig0016062:69630-69649 Msa1357330:intron 25.0%
! ACAAATGCATAAAATATGCA+AGG - tig0016062:69674-69693 None:intergenic 25.0%
! GAAGTAATATCAAAATCTTG+GGG + tig0016062:69734-69753 Msa1357330:intron 25.0%
! TTATGCATTGAAAATATCCT+GGG + tig0016062:69757-69776 Msa1357330:intron 25.0%
! TTGTATTTGTCAAACAATTG+TGG + tig0016062:69791-69810 Msa1357330:intron 25.0%
! TAGTAGTTACATATAAGAAC+TGG + tig0016062:69828-69847 Msa1357330:intron 25.0%
! ACAAACCCATTATAAAAGTT+CGG - tig0016062:69912-69931 None:intergenic 25.0%
! TAAACCGAATTTAATTGAAC+CGG + tig0016062:69934-69953 Msa1357330:intron 25.0%
!!! TTTACCGGTTCAATTAAATT+CGG - tig0016062:69941-69960 None:intergenic 25.0%
!! ATACATTTTGCCTTATGTAA+AGG - tig0016062:70002-70021 None:intergenic 25.0%
!!! AATAGTTCTAACATTCGATT+TGG - tig0016062:70095-70114 None:intergenic 25.0%
!! ACAAATAGTTTGTGAATTGA+AGG - tig0016062:70166-70185 None:intergenic 25.0%
!!! TTGTCCAAGTTCAATTTTTT+CGG + tig0016062:70182-70201 Msa1357330:intron 25.0%
!!! GCTATTTGTTTTTGTAACTA+GGG - tig0016062:70248-70267 None:intergenic 25.0%
!!! TGCTATTTGTTTTTGTAACT+AGG - tig0016062:70249-70268 None:intergenic 25.0%
!!! AACAAAAGAAAGGTATTTCT+AGG - tig0016062:70390-70409 None:intergenic 25.0%
!! AGAAATACCTTTCTTTTGTT+TGG + tig0016062:70390-70409 Msa1357330:intron 25.0%
!! TGTTTGGATTGACTTATTTA+CGG + tig0016062:70406-70425 Msa1357330:intron 25.0%
! CAATTGTTTGTCAAACTATT+CGG + tig0016062:70432-70451 Msa1357330:intron 25.0%
!!! ATAAGTTGTTTTCGTAAACT+TGG - tig0016062:70458-70477 None:intergenic 25.0%
!!! TAAGTTCTTTTTAGTAGTAG+AGG + tig0016062:70486-70505 Msa1357330:intron 25.0%
!! AATCATGAGTTAACTACTTT+TGG - tig0016062:70838-70857 None:intergenic 25.0%
!! GTGTGAATAAGTTGAAAATT+AGG + tig0016062:70946-70965 Msa1357330:intron 25.0%
!! ACCTATTATCTAGTAACTTT+TGG - tig0016062:71331-71350 None:intergenic 25.0%
! AAAAGTTACTAGATAATAGG+TGG + tig0016062:71330-71349 Msa1357330:intron 25.0%
! AATCGGATCTTAAATGATAT+TGG - tig0016062:71662-71681 None:intergenic 25.0%
!! AATGAGTTTTCTTAATGCAT+TGG + tig0016062:71906-71925 Msa1357330:intron 25.0%
!!! TCTTAATGCATTGGTTAAAA+AGG + tig0016062:71915-71934 Msa1357330:intron 25.0%
! TCCATAATAATATATGCTGA+TGG + tig0016062:72085-72104 Msa1357330:intron 25.0%
! CCATAATAATATATGCTGAT+GGG + tig0016062:72086-72105 Msa1357330:intron 25.0%
!!! AATCCTTTTAATTTGTAGCT+CGG + tig0016062:72126-72145 Msa1357330:intron 25.0%
! CTAGCTTATATTTACACTTA+CGG + tig0016062:72476-72495 Msa1357330:intron 25.0%
!!! GACAAATACTCACTTTTTAA+AGG - tig0016062:72638-72657 None:intergenic 25.0%
AAAAATAAGAAAGAGCAGAG+GGG - tig0016062:67888-67907 None:intergenic 30.0%
GAAAAATAAGAAAGAGCAGA+GGG - tig0016062:67889-67908 None:intergenic 30.0%
AGAAAAATAAGAAAGAGCAG+AGG - tig0016062:67890-67909 None:intergenic 30.0%
! TTTGGAAAACAACACAGTTT+TGG + tig0016062:68042-68061 Msa1357330:intron 30.0%
AATGAGATCTAGTTAACCAA+AGG - tig0016062:68083-68102 None:intergenic 30.0%
TTATTCATCAAAATGGTGAG+AGG + tig0016062:68164-68183 Msa1357330:exon 30.0%
ACTTTCTCAAAGAGAAGAAA+TGG + tig0016062:68233-68252 Msa1357330:CDS 30.0%
!! AAGAAATGGACTGCTTAAAA+AGG + tig0016062:68247-68266 Msa1357330:CDS 30.0%
GTATTGTGTACTTGATTACT+TGG + tig0016062:68427-68446 Msa1357330:intron 30.0%
! GATTTTCACTGATGCTATAA+AGG + tig0016062:68558-68577 Msa1357330:intron 30.0%
!!! GTAACACTAGAGTTTTAGTT+AGG - tig0016062:68681-68700 None:intergenic 30.0%
! TCAAAGGTGAGTGATTTTAA+TGG + tig0016062:68744-68763 Msa1357330:intron 30.0%
! TAATTTGTGGATTCAAGAAG+TGG + tig0016062:68910-68929 Msa1357330:intron 30.0%
!!! CTTTTTTTATGTCAAGTGTG+TGG - tig0016062:69045-69064 None:intergenic 30.0%
CACACACTTGACATAAAAAA+AGG + tig0016062:69043-69062 Msa1357330:intron 30.0%
AAAAAAGGTAAATTTCCCCT+CGG + tig0016062:69058-69077 Msa1357330:intron 30.0%
ATTATAACTCTACTCTCTAG+AGG - tig0016062:69115-69134 None:intergenic 30.0%
GTGAATATGGGTTTAGATTT+AGG - tig0016062:69307-69326 None:intergenic 30.0%
! TTTAGGTTTAGGGTGAATAT+GGG - tig0016062:69319-69338 None:intergenic 30.0%
! AGTATATGGGTTTAGGTTTA+GGG - tig0016062:69329-69348 None:intergenic 30.0%
! AAGTATATGGGTTTAGGTTT+AGG - tig0016062:69330-69349 None:intergenic 30.0%
ATATCTGGTAAATCAAGAAC+TGG - tig0016062:69434-69453 None:intergenic 30.0%
TTGGAAAAAGTTAACCTTGT+TGG + tig0016062:69544-69563 Msa1357330:intron 30.0%
AAAAAAAACTTTAAGCGACG+GGG - tig0016062:69624-69643 None:intergenic 30.0%
!!! CGTCGCTTAAAGTTTTTTTT+TGG + tig0016062:69624-69643 Msa1357330:intron 30.0%
ATGCATAAAATATGCAAGGT+CGG - tig0016062:69670-69689 None:intergenic 30.0%
TTTGATATTACTTCAAGCGA+GGG - tig0016062:69728-69747 None:intergenic 30.0%
! TTTTGATATTACTTCAAGCG+AGG - tig0016062:69729-69748 None:intergenic 30.0%
GTTATGCATTGAAAATATCC+TGG + tig0016062:69756-69775 Msa1357330:intron 30.0%
TATGCATTGAAAATATCCTG+GGG + tig0016062:69758-69777 Msa1357330:intron 30.0%
TATTTGTCAAACAATTGTGG+AGG + tig0016062:69794-69813 Msa1357330:intron 30.0%
GTTACATATAAGAACTGGTT+CGG + tig0016062:69833-69852 Msa1357330:intron 30.0%
CAAACCCATTATAAAAGTTC+GGG - tig0016062:69911-69930 None:intergenic 30.0%
!! TTCTAACATTCGATTTGGTA+GGG - tig0016062:70090-70109 None:intergenic 30.0%
TCTACCGAAAAAATTGAACT+TGG - tig0016062:70189-70208 None:intergenic 30.0%
AAATATATGCATGTGAGTCA+TGG - tig0016062:70286-70305 None:intergenic 30.0%
AGTCAATCCAAACAAAAGAA+AGG - tig0016062:70400-70419 None:intergenic 30.0%
!! ATGAGTTAACTACTTTTGGT+CGG - tig0016062:70834-70853 None:intergenic 30.0%
TCAACTTATTCACACCAAAA+GGG - tig0016062:70941-70960 None:intergenic 30.0%
TTCAACTTATTCACACCAAA+AGG - tig0016062:70942-70961 None:intergenic 30.0%
! AGCACTTTTCTCTAAACTAA+GGG - tig0016062:71194-71213 None:intergenic 30.0%
! AAGCACTTTTCTCTAAACTA+AGG - tig0016062:71195-71214 None:intergenic 30.0%
GCCAAAAGTTACTAGATAAT+AGG + tig0016062:71327-71346 Msa1357330:intron 30.0%
ATAATAGGTGGAGATTTAGT+AGG + tig0016062:71342-71361 Msa1357330:intron 30.0%
TGTGTGTATATTGATCAAAC+CGG + tig0016062:71757-71776 Msa1357330:intron 30.0%
! CAATAAATAGACTTTTCCGT+TGG - tig0016062:71783-71802 None:intergenic 30.0%
CCCATCAGCATATATTATTA+TGG - tig0016062:72089-72108 None:intergenic 30.0%
TGAAGTATGCAACAAATGAA+TGG - tig0016062:72167-72186 None:intergenic 30.0%
!! GATATACTTGTTATTGTCCA+TGG + tig0016062:72258-72277 Msa1357330:intron 30.0%
! TGTATTTTCTTGGATTCCTT+TGG - tig0016062:72354-72373 None:intergenic 30.0%
CATGTATATATCCAGTGAAA+TGG + tig0016062:72396-72415 Msa1357330:intron 30.0%
TAGGAATTAATCCATTTCAC+TGG - tig0016062:72410-72429 None:intergenic 30.0%
TATATTTACACTTACGGACA+TGG + tig0016062:72482-72501 Msa1357330:intron 30.0%
!! GACATGGCTTTATCTTATTT+AGG + tig0016062:72498-72517 Msa1357330:intron 30.0%
ACATCTAGGTAGGTTACATA+GGG + tig0016062:67821-67840 Msa1357330:five_prime_UTR 35.0%
! TTCAGCACCACTTTCTATTT+TGG + tig0016062:68024-68043 Msa1357330:intron 35.0%
AGATATGAACTCTCTTTGAG+GGG - tig0016062:68131-68150 None:intergenic 35.0%
GAGATATGAACTCTCTTTGA+GGG - tig0016062:68132-68151 None:intergenic 35.0%
!! ACAAAGCACTGAAAGTTCAA+AGG - tig0016062:68273-68292 None:intergenic 35.0%
TTCACTGATGCTATAAAGGT+AGG + tig0016062:68562-68581 Msa1357330:intron 35.0%
GAAAGAAAATTTGACACGTG+TGG - tig0016062:68859-68878 None:intergenic 35.0%
AAAAAGGTAAATTTCCCCTC+GGG + tig0016062:69059-69078 Msa1357330:intron 35.0%
AATTCTGCTTGAAAAGGCTT+TGG + tig0016062:69132-69151 Msa1357330:intron 35.0%
! GTTTAGGTTTAGGGTGAATA+TGG - tig0016062:69320-69339 None:intergenic 35.0%
! AAGCATTGTTTCTCTTTCCT+CGG + tig0016062:69506-69525 Msa1357330:intron 35.0%
!! CAAGGTTAACTTTTTCCAAC+AGG - tig0016062:69543-69562 None:intergenic 35.0%
AAAAAAACTTTAAGCGACGG+GGG - tig0016062:69623-69642 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+GGG - tig0016062:69669-69688 None:intergenic 35.0%
TTGATATTACTTCAAGCGAG+GGG - tig0016062:69727-69746 None:intergenic 35.0%
ATACAAAAAGAAAAGTCCCC+AGG - tig0016062:69777-69796 None:intergenic 35.0%
!! ATATAAGAACTGGTTCGGTT+CGG + tig0016062:69838-69857 Msa1357330:intron 35.0%
!!! CGGGTCAGTTTTTTTAATTG+TGG - tig0016062:69892-69911 None:intergenic 35.0%
! ACTGACCCGAACTTTTATAA+TGG + tig0016062:69903-69922 Msa1357330:intron 35.0%
! CTGACCCGAACTTTTATAAT+GGG + tig0016062:69904-69923 Msa1357330:intron 35.0%
!! ATGTAAAGGTAGTTCTGGTT+CGG - tig0016062:69988-70007 None:intergenic 35.0%
ACCAGAACTACCTTTACATA+AGG + tig0016062:69989-70008 Msa1357330:intron 35.0%
!! GTTCTAACATTCGATTTGGT+AGG - tig0016062:70091-70110 None:intergenic 35.0%
ATGTCAATGCACGTTCAATT+AGG + tig0016062:70342-70361 Msa1357330:intron 35.0%
GATAACTTTGTCTAGAGGAA+AGG + tig0016062:70807-70826 Msa1357330:intron 35.0%
! TTTTGTCAATTCACCCCTTT+TGG + tig0016062:70924-70943 Msa1357330:intron 35.0%
CAACTTATTCACACCAAAAG+GGG - tig0016062:70940-70959 None:intergenic 35.0%
AAAATTAGGTGTTTGAACCC+TGG + tig0016062:70960-70979 Msa1357330:intron 35.0%
AGGGAACACGTGATATATAT+CGG - tig0016062:71175-71194 None:intergenic 35.0%
GCAGTTAAATTGAGACTTTG+TGG + tig0016062:71264-71283 Msa1357330:intron 35.0%
TTTAATGATGTTGGACTCGT+CGG - tig0016062:71527-71546 None:intergenic 35.0%
!!! ATGCTGATGGGTTTTTTGAA+AGG + tig0016062:72098-72117 Msa1357330:intron 35.0%
!!! TGCTGATGGGTTTTTTGAAA+GGG + tig0016062:72099-72118 Msa1357330:intron 35.0%
CATCCGAGCTACAAATTAAA+AGG - tig0016062:72132-72151 None:intergenic 35.0%
!!! CTTTTAATTTGTAGCTCGGA+TGG + tig0016062:72130-72149 Msa1357330:intron 35.0%
!! ATACTTGTTATTGTCCATGG+TGG + tig0016062:72261-72280 Msa1357330:intron 35.0%
AGGAATCCAAGAAAATACAC+AGG + tig0016062:72355-72374 Msa1357330:intron 35.0%
! AGCTAACCTGTGTATTTTCT+TGG - tig0016062:72364-72383 None:intergenic 35.0%
GACATCTAGGTAGGTTACAT+AGG + tig0016062:67820-67839 Msa1357330:five_prime_UTR 40.0%
ACTCACTGCAATCAATCAAC+TGG + tig0016062:67854-67873 Msa1357330:five_prime_UTR 40.0%
ACCAAAGGTTAGAACACAAG+TGG - tig0016062:68068-68087 None:intergenic 40.0%
CGAGATATGAACTCTCTTTG+AGG - tig0016062:68133-68152 None:intergenic 40.0%
TCTATGAGTTCTCCAGTTCA+AGG + tig0016062:68336-68355 Msa1357330:CDS 40.0%
ATGCAGCAGACCTTTATAGT+TGG - tig0016062:68656-68675 None:intergenic 40.0%
! TTGCTAATTAGGTGGGTTTG+AGG + tig0016062:68816-68835 Msa1357330:intron 40.0%
ATGACAAATTTGAACCCGAG+GGG - tig0016062:69076-69095 None:intergenic 40.0%
CATGACAAATTTGAACCCGA+GGG - tig0016062:69077-69096 None:intergenic 40.0%
!!! AGTTTTTTTTTGGCAGTGGC+CGG + tig0016062:69634-69653 Msa1357330:intron 40.0%
GCATAAAATATGCAAGGTCG+GGG - tig0016062:69668-69687 None:intergenic 40.0%
TGATATTACTTCAAGCGAGG+GGG - tig0016062:69726-69745 None:intergenic 40.0%
GCCTTATGTAAAGGTAGTTC+TGG - tig0016062:69993-70012 None:intergenic 40.0%
!! CTTTTTAGTAGTAGAGGCAG+TGG + tig0016062:70492-70511 Msa1357330:intron 40.0%
CCTCTAGACAAAGTTATCGT+AGG - tig0016062:70805-70824 None:intergenic 40.0%
CCTACGATAACTTTGTCTAG+AGG + tig0016062:70802-70821 Msa1357330:intron 40.0%
ATTACGTTATGCAAGTGCCA+GGG - tig0016062:70980-70999 None:intergenic 40.0%
! GTGGAGATTTAGTAGGTTGA+GGG + tig0016062:71349-71368 Msa1357330:intron 40.0%
! TGGAGATTTAGTAGGTTGAG+GGG + tig0016062:71350-71369 Msa1357330:intron 40.0%
ATATTGATCAAACCGGCCAA+CGG + tig0016062:71764-71783 Msa1357330:intron 40.0%
! AAATAGACTTTTCCGTTGGC+CGG - tig0016062:71779-71798 None:intergenic 40.0%
CTTCAGTATAAGCGAAACAG+TGG + tig0016062:72289-72308 Msa1357330:intron 40.0%
AAACAGTGGAACGCTATCAA+GGG + tig0016062:72303-72322 Msa1357330:intron 40.0%
ACGCTATCAAGGGAAAGTTA+AGG + tig0016062:72313-72332 Msa1357330:intron 40.0%
TCAAGGGAAAGTTAAGGAAC+TGG + tig0016062:72319-72338 Msa1357330:intron 40.0%
TCTAGGTAGGTTACATAGGG+TGG + tig0016062:67824-67843 Msa1357330:five_prime_UTR 45.0%
GTAGGTTACATAGGGTGGAT+GGG + tig0016062:67829-67848 Msa1357330:five_prime_UTR 45.0%
TAGGTTACATAGGGTGGATG+GGG + tig0016062:67830-67849 Msa1357330:five_prime_UTR 45.0%
GCCACTTGTGTTCTAACCTT+TGG + tig0016062:68064-68083 Msa1357330:intron 45.0%
TCATCGTCTTCTCTACCACT+GGG + tig0016062:68309-68328 Msa1357330:CDS 45.0%
GAACTCATAGAGTTTCCCAG+TGG - tig0016062:68327-68346 None:intergenic 45.0%
CCATGACAAATTTGAACCCG+AGG - tig0016062:69078-69097 None:intergenic 45.0%
CCTCGGGTTCAAATTTGTCA+TGG + tig0016062:69075-69094 Msa1357330:intron 45.0%
!!! GTTTTTTTTTGGCAGTGGCC+GGG + tig0016062:69635-69654 Msa1357330:intron 45.0%
!!! TTTTTTTTTGGCAGTGGCCG+GGG + tig0016062:69636-69655 Msa1357330:intron 45.0%
TCTTGTGAGCTTAGCTCAGT+TGG - tig0016062:69702-69721 None:intergenic 45.0%
CATTACGTTATGCAAGTGCC+AGG - tig0016062:70981-71000 None:intergenic 45.0%
ATGCTGCACATGAAAAAGCG+TGG + tig0016062:71235-71254 Msa1357330:intron 45.0%
! TGCTGCACATGAAAAAGCGT+GGG + tig0016062:71236-71255 Msa1357330:intron 45.0%
GAGACTTTGTGGTGCAAACA+TGG + tig0016062:71275-71294 Msa1357330:intron 45.0%
TGGTGCATCACTTACACTTG+AGG + tig0016062:71295-71314 Msa1357330:intron 45.0%
GGTGCATCACTTACACTTGA+GGG + tig0016062:71296-71315 Msa1357330:intron 45.0%
GTGCATCACTTACACTTGAG+GGG + tig0016062:71297-71316 Msa1357330:intron 45.0%
TGCATCACTTACACTTGAGG+GGG + tig0016062:71298-71317 Msa1357330:intron 45.0%
GGTGGAGATTTAGTAGGTTG+AGG + tig0016062:71348-71367 Msa1357330:intron 45.0%
! GGAGATTTAGTAGGTTGAGG+GGG + tig0016062:71351-71370 Msa1357330:intron 45.0%
ATCCAACCACCTCTACTCAT+GGG - tig0016062:71410-71429 None:intergenic 45.0%
! ATACTGAAGCATCTCCACCA+TGG - tig0016062:72278-72297 None:intergenic 45.0%
GAAACAGTGGAACGCTATCA+AGG + tig0016062:72302-72321 Msa1357330:intron 45.0%
TTAGCCGTACATGCACAAGA+GGG - tig0016062:72525-72544 None:intergenic 45.0%
!!! ATAGATTTTTTTTTTTTTTT+TGG + tig0016062:69572-69591 Msa1357330:intron 5.0%
!!! TAGATTTTTTTTTTTTTTTT+GGG + tig0016062:69573-69592 Msa1357330:intron 5.0%
!! TTTAAAAAAAATTATAGTTT+AGG + tig0016062:70742-70761 Msa1357330:intron 5.0%
!! AAAAAATATATTAAAATGTT+AGG - tig0016062:70906-70925 None:intergenic 5.0%
!! AATATTTGAAAATTATAATA+TGG - tig0016062:71086-71105 None:intergenic 5.0%
!!! TTTTTATTATATATCAAAAT+TGG - tig0016062:71453-71472 None:intergenic 5.0%
!! AAAAAATAAAAATTTAACAT+TGG - tig0016062:72007-72026 None:intergenic 5.0%
!!! TAGTTTTTTTTTTTTTTTTT+TGG - tig0016062:72595-72614 None:intergenic 5.0%
GGTAGGTTACATAGGGTGGA+TGG + tig0016062:67828-67847 Msa1357330:five_prime_UTR 50.0%
CTCATCGTCTTCTCTACCAC+TGG + tig0016062:68308-68327 Msa1357330:CDS 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - tig0016062:69698-69717 None:intergenic 50.0%
GATCCAACCACCTCTACTCA+TGG - tig0016062:71411-71430 None:intergenic 50.0%
AGAGGTGGTTGGATCGAGTT+AGG + tig0016062:71416-71435 Msa1357330:intron 50.0%
AGGACCCTCTTGTGCATGTA+CGG + tig0016062:72518-72537 Msa1357330:intron 50.0%
GTTAGCCGTACATGCACAAG+AGG - tig0016062:72526-72545 None:intergenic 50.0%
AACAGGTTATGCTCGTGCCG+AGG - tig0016062:69526-69545 None:intergenic 55.0%
TCGGCACGAGCATAACCTGT+TGG + tig0016062:69525-69544 Msa1357330:intron 55.0%
GTTGCCAGGAACCTGGTTCA+GGG + tig0016062:70516-70535 Msa1357330:intron 55.0%
TTGCCAGGAACCTGGTTCAG+GGG + tig0016062:70517-70536 Msa1357330:intron 55.0%
AAGTGTGAACCCCCTGAACC+AGG - tig0016062:70530-70549 None:intergenic 55.0%
CAACCACCTCTACTCATGGG+CGG - tig0016062:71407-71426 None:intergenic 55.0%
! GAACTGGCTCTCAGCACCAA+AGG + tig0016062:72335-72354 Msa1357330:intron 55.0%
CAAGGTCGGGGTTCAAACCC+CGG - tig0016062:69656-69675 None:intergenic 60.0%
CGTTGCCAGGAACCTGGTTC+AGG + tig0016062:70515-70534 Msa1357330:intron 60.0%
TGCCAGGAACCTGGTTCAGG+GGG + tig0016062:70518-70537 Msa1357330:intron 60.0%
AACCCCCTGAACCAGGTTCC+TGG - tig0016062:70523-70542 None:intergenic 60.0%
CGCCCATGAGTAGAGGTGGT+TGG + tig0016062:71405-71424 Msa1357330:intron 60.0%
GTAGAGGCAGTGGCGTTGCC+AGG + tig0016062:70502-70521 Msa1357330:intron 65.0%
CAGTGGCGTTGCCAGGAACC+TGG + tig0016062:70509-70528 Msa1357330:intron 65.0%
AGGGGGTTCAGCTGAACCCC+CGG + tig0016062:71368-71387 Msa1357330:intron 65.0%
GTGCCTCCGCCCATGAGTAG+AGG + tig0016062:71398-71417 Msa1357330:intron 65.0%
CCACCTCTACTCATGGGCGG+AGG - tig0016062:71404-71423 None:intergenic 65.0%
CCTCCGCCCATGAGTAGAGG+TGG + tig0016062:71401-71420 Msa1357330:intron 65.0%
! CGGAGGCACATGTGTGCCGG+GGG - tig0016062:71387-71406 None:intergenic 70.0%
! GCGGAGGCACATGTGTGCCG+GGG - tig0016062:71388-71407 None:intergenic 70.0%
! GGCGGAGGCACATGTGTGCC+GGG - tig0016062:71389-71408 None:intergenic 70.0%
! GGGCGGAGGCACATGTGTGC+CGG - tig0016062:71390-71409 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0016062 gene 67820 72731 67820 ID=Msa1357330;Name=Msa1357330
tig0016062 mRNA 67820 72731 67820 ID=Msa1357330-mRNA-1;Parent=Msa1357330;Name=Msa1357330-mRNA-1;_AED=0.16;_eAED=0.16;_QI=270|0.5|0.66|0.66|0|0|3|0|66
tig0016062 exon 67820 68008 67820 ID=Msa1357330-mRNA-1:exon:10317;Parent=Msa1357330-mRNA-1
tig0016062 exon 68095 68357 68095 ID=Msa1357330-mRNA-1:exon:10318;Parent=Msa1357330-mRNA-1
tig0016062 exon 72716 72731 72716 ID=Msa1357330-mRNA-1:exon:10319;Parent=Msa1357330-mRNA-1
tig0016062 five_prime_UTR 67820 68008 67820 ID=Msa1357330-mRNA-1:five_prime_utr;Parent=Msa1357330-mRNA-1
tig0016062 five_prime_UTR 68095 68175 68095 ID=Msa1357330-mRNA-1:five_prime_utr;Parent=Msa1357330-mRNA-1
tig0016062 CDS 68176 68357 68176 ID=Msa1357330-mRNA-1:cds;Parent=Msa1357330-mRNA-1
tig0016062 CDS 72716 72731 72716 ID=Msa1357330-mRNA-1:cds;Parent=Msa1357330-mRNA-1
Gene Sequence

>Msa1357330

ATGGTGAGAGGAAAAACTCAAATGAAACGCATCGAAAATGAGTCAAACAGACAAGTAACTTTCTCAAAGAGAAGAAATGGACTGCTTAAAAAGGCCTTTGAACTTTCAGTGCTTTGTGATGCTGAAGTAGCACTCATCGTCTTCTCTACCACTGGGAAACTCTATGAGTTCTCCAGTTCAAGTTCTCTTGAAAAACAT
Protein sequence

>Msa1357330

MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSSSSLEKH