AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1359780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359780 MtrunA17_Chr3g0132951 99.413 511 3 0 1 511 1 511 0.0 1057
Msa1359780 MtrunA17_Chr5g0412251 70.020 497 142 2 15 511 8 497 0.0 723
Msa1359780 MtrunA17_Chr2g0284071 37.945 477 267 13 54 509 165 633 3.27e-96 305
Msa1359780 MtrunA17_Chr4g0043911 37.307 453 249 11 67 511 118 543 3.36e-96 302
Msa1359780 MtrunA17_Chr3g0123521 36.429 420 235 8 84 494 130 526 5.25e-94 296
Msa1359780 MtrunA17_Chr1g0160781 36.645 453 252 11 67 511 117 542 3.78e-93 294
Msa1359780 MtrunA17_Chr3g0077321 37.528 453 231 12 76 511 123 540 7.34e-91 288
Msa1359780 MtrunA17_Chr3g0132371 35.335 433 235 6 75 500 116 510 2.28e-89 284
Msa1359780 MtrunA17_Chr5g0424241 39.810 422 217 10 102 511 159 555 9.64e-89 283
Msa1359780 MtrunA17_Chr5g0426591 34.642 433 241 7 75 500 86 483 5.18e-85 272
Msa1359780 MtrunA17_Chr4g0042711 36.744 430 224 8 94 511 91 484 8.32e-85 271
Msa1359780 MtrunA17_Chr5g0448581 36.229 472 246 14 23 485 44 469 3.63e-83 268
Msa1359780 MtrunA17_Chr2g0307971 34.267 464 243 11 74 511 76 503 8.25e-82 263
Msa1359780 MtrunA17_Chr4g0061781 34.534 472 240 10 74 511 68 504 2.34e-81 262
Msa1359780 MtrunA17_Chr5g0417871 36.156 437 228 10 90 511 72 472 3.94e-81 261
Msa1359780 MtrunA17_Chr6g0455571 35.321 436 232 10 88 511 106 503 2.17e-80 259
Msa1359780 MtrunA17_Chr1g0204121 35.982 453 247 13 66 511 54 470 1.80e-78 254
Msa1359780 MtrunA17_Chr4g0056061 36.342 421 228 11 94 510 101 485 2.79e-77 252
Msa1359780 MtrunA17_Chr5g0399311 37.441 422 224 12 93 510 116 501 3.75e-77 251
Msa1359780 MtrunA17_Chr4g0075311 34.868 456 265 11 71 509 144 584 1.85e-76 251
Msa1359780 MtrunA17_Chr3g0143821 34.100 478 264 13 33 495 31 472 2.01e-75 248
Msa1359780 MtrunA17_Chr3g0129981 33.737 495 268 11 17 500 38 483 6.52e-75 245
Msa1359780 MtrunA17_Chr1g0204141 34.565 460 247 15 66 511 54 473 5.90e-73 240
Msa1359780 MtrunA17_Chr4g0070551 34.066 455 245 12 72 511 199 613 1.34e-72 242
Msa1359780 MtrunA17_Chr4g0008451 32.420 438 249 9 75 504 206 604 4.43e-69 233
Msa1359780 MtrunA17_Chr5g0436321 33.333 426 230 11 100 511 161 546 8.80e-66 222
Msa1359780 MtrunA17_Chr4g0010511 33.484 442 241 10 83 511 211 612 4.18e-63 216
Msa1359780 MtrunA17_Chr3g0087291 32.609 460 241 9 73 511 141 552 1.89e-62 213
Msa1359780 MtrunA17_Chr4g0003561 30.711 394 216 11 72 457 45 389 1.74e-48 173
Msa1359780 MtrunA17_Chr1g0146501 29.305 331 188 10 98 415 88 385 3.73e-32 130
Msa1359780 MtrunA17_Chr3g0127811 29.448 326 185 10 98 417 61 347 5.85e-30 122
Msa1359780 MtrunA17_Chr7g0220381 28.319 339 195 7 94 418 92 396 2.19e-29 122
Msa1359780 MtrunA17_Chr2g0298881 25.333 375 210 10 82 452 17 325 6.97e-24 103
Msa1359780 MtrunA17_Chr4g0002361 25.064 391 221 14 67 452 55 378 6.74e-23 100
Msa1359780 MtrunA17_Chr7g0240241 41.600 125 63 3 292 410 3 123 9.37e-21 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359780 AT4G24530.1 73.973 511 133 0 1 511 2 512 0.0 803
Msa1359780 AT5G65470.1 72.805 467 123 2 47 511 34 498 0.0 716
Msa1359780 AT3G26370.1 35.664 429 234 8 80 494 134 534 1.72e-94 298
Msa1359780 AT1G35510.1 37.719 456 243 10 67 511 127 552 3.17e-93 295
Msa1359780 AT2G01480.1 36.484 455 250 13 67 511 122 547 1.03e-91 291
Msa1359780 AT1G29200.4 39.052 443 247 9 84 509 50 486 5.97e-90 284
Msa1359780 AT1G29200.1 39.052 443 247 9 84 509 50 486 5.97e-90 284
Msa1359780 AT1G38065.2 38.407 427 220 10 100 511 26 424 3.42e-89 281
Msa1359780 AT1G38065.1 38.407 427 220 10 100 511 36 434 4.30e-89 281
Msa1359780 AT1G29200.2 39.052 443 247 9 84 509 166 602 1.56e-88 284
Msa1359780 AT1G38131.1 38.407 427 220 10 100 511 155 553 1.00e-87 281
Msa1359780 AT1G14970.2 36.629 445 238 12 80 511 15 428 1.09e-87 276
Msa1359780 AT1G14970.1 35.518 473 259 14 53 511 108 548 3.78e-87 279
Msa1359780 AT1G14970.3 36.407 423 229 9 100 511 9 402 1.98e-85 270
Msa1359780 AT1G29200.3 38.889 414 234 8 109 509 5 412 5.74e-85 269
Msa1359780 AT1G62330.1 36.937 444 257 11 83 509 205 642 1.69e-84 274
Msa1359780 AT2G01480.2 36.364 429 237 11 67 487 122 522 3.71e-84 270
Msa1359780 AT3G02250.1 34.409 465 242 11 75 511 65 494 1.29e-83 268
Msa1359780 AT4G38390.1 39.221 385 197 9 103 485 126 475 3.63e-83 268
Msa1359780 AT5G15740.1 33.763 465 245 11 75 511 65 494 2.56e-82 265
Msa1359780 AT1G20550.1 37.355 431 224 11 87 510 94 485 2.66e-81 264
Msa1359780 AT1G22460.1 33.718 433 242 6 75 500 135 529 1.50e-80 262
Msa1359780 AT1G11990.2 35.792 461 266 11 74 509 148 603 7.33e-80 261
Msa1359780 AT1G11990.1 36.018 447 247 10 74 509 163 581 9.24e-80 260
Msa1359780 AT1G76270.1 38.035 397 203 9 103 495 109 466 1.07e-79 259
Msa1359780 AT5G64600.1 36.591 440 224 10 73 500 90 486 3.68e-79 257
Msa1359780 AT2G03280.1 37.412 425 217 10 100 511 88 476 8.90e-79 254
Msa1359780 AT1G14020.1 37.028 424 219 9 100 511 91 478 1.00e-78 255
Msa1359780 AT1G04910.1 34.211 456 253 13 65 511 53 470 9.76e-76 248
Msa1359780 AT4G16650.2 36.865 453 239 14 47 494 72 482 1.20e-73 243
Msa1359780 AT4G16650.1 36.865 453 239 14 47 494 72 482 1.20e-73 243
Msa1359780 AT2G37980.1 33.628 452 245 12 75 511 200 611 2.93e-73 244
Msa1359780 AT2G03280.2 35.177 452 217 11 100 511 88 503 6.02e-73 240
Msa1359780 AT5G35570.1 32.203 472 269 10 53 511 203 636 9.97e-71 238
Msa1359780 AT3G54100.1 31.486 451 256 10 75 511 196 607 6.83e-69 233
Msa1359780 AT2G44500.1 34.298 449 253 7 71 511 143 557 2.21e-68 230
Msa1359780 AT5G01100.1 31.347 453 256 10 75 511 191 604 3.63e-67 228
Msa1359780 AT3G07900.1 30.905 453 257 8 74 511 157 568 6.02e-63 216
Msa1359780 AT5G63390.1 32.009 453 262 8 69 511 128 544 5.34e-62 213
Msa1359780 AT3G26370.2 37.828 267 129 5 80 337 134 372 1.05e-59 202
Msa1359780 AT1G52630.1 28.404 426 248 14 73 491 45 420 7.99e-49 174
Msa1359780 AT2G44500.2 32.770 296 160 5 71 361 143 404 4.41e-39 147
Msa1359780 AT1G52630.2 27.513 378 219 13 119 491 5 332 1.29e-38 144
Msa1359780 AT3G03810.2 29.067 375 206 13 74 427 61 396 3.04e-35 140
Msa1359780 AT3G03810.1 29.067 375 206 13 74 427 61 396 3.04e-35 140
Msa1359780 AT3G30300.2 29.129 333 198 8 97 420 97 400 4.79e-31 127
Msa1359780 AT3G30300.1 29.129 333 198 8 97 420 97 400 4.79e-31 127
Msa1359780 AT3G21190.1 25.490 357 197 9 100 452 90 381 3.83e-21 96.3
Msa1359780 AT1G51630.1 24.930 357 199 9 100 452 91 382 4.77e-21 95.9

Find 101 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCATTCAGCTTGTGATTT+TGG 0.068002 tig0016736:-904 Msa1359780:CDS
TTGCACTCACAAGGTGATTT+TGG 0.172599 tig0016736:+3957 None:intergenic
GTTCCACACGTTAAGGAATT+AGG 0.206831 tig0016736:-1734 Msa1359780:CDS
TCCCAATCTCTTCCAACCTT+TGG 0.221205 tig0016736:-4406 Msa1359780:CDS
GGATTGCTCCTAGCTGCTTT+GGG 0.249772 tig0016736:-748 Msa1359780:CDS
TCAACTCTTCATCATTGAAT+TGG 0.253038 tig0016736:+809 None:intergenic
GAAGAGATTGGGAATGAAAA+AGG 0.269105 tig0016736:+4416 None:intergenic
CCCAATCTCTTCCAACCTTT+GGG 0.276481 tig0016736:-4405 Msa1359780:CDS
TTGCTGTTTCCCAAGCTTAT+CGG 0.280991 tig0016736:+1634 None:intergenic
CATCTTCATTTCGGCTTCTC+CGG 0.300796 tig0016736:-356 Msa1359780:CDS
TGGATTGCTCCTAGCTGCTT+TGG 0.317788 tig0016736:-749 Msa1359780:CDS
CTAAATACCGGCAGGTGATT+TGG 0.320489 tig0016736:-852 Msa1359780:CDS
CAACTCTTCATCATTGAATT+GGG 0.327093 tig0016736:+810 None:intergenic
GAGACAATGGCCAAAGTTAA+TGG 0.337935 tig0016736:-430 Msa1359780:CDS
GCACAGCGACATCTTCATTT+CGG 0.365352 tig0016736:-365 Msa1359780:CDS
AGGAGCAATCCAATCTCTTC+GGG 0.388321 tig0016736:+760 None:intergenic
AGCTTCCTGGTGAGTACTCT+TGG 0.391715 tig0016736:-3146 Msa1359780:CDS
GAACTTTGTTCCACACGTTA+AGG 0.393106 tig0016736:-1741 Msa1359780:CDS
CGGTACAAGGTTTCCATCCT+TGG 0.393966 tig0016736:+3985 None:intergenic
ACCAAAATCACAAGCTGAAT+GGG 0.400153 tig0016736:+903 None:intergenic
TGATGAAGAGTTGAGAAATC+AGG 0.404730 tig0016736:-800 Msa1359780:CDS
GTATACAGAAAATGTATTGC+CGG 0.409053 tig0016736:-3046 Msa1359780:CDS
CGATGCCTTTCCATTAACTT+TGG 0.411811 tig0016736:+420 None:intergenic
CACCAAAATCACAAGCTGAA+TGG 0.427593 tig0016736:+902 None:intergenic
ACCCAAAGGTTGGAAGAGAT+TGG 0.429198 tig0016736:+4404 None:intergenic
AGCGCTGCCCGAAAAGTCTC+GGG 0.432285 tig0016736:-3836 Msa1359780:CDS
TACCTTGAATCTTGCCAGAC+AGG 0.439319 tig0016736:+3324 None:intergenic
TTCACATACCTCTGAAGAAC+CGG 0.439622 tig0016736:+3027 None:intergenic
ATCTTCATTTCGGCTTCTCC+GGG 0.439681 tig0016736:-355 Msa1359780:CDS
GGAGTTACGGAGAAGATAGA+AGG 0.440993 tig0016736:+4372 None:intergenic
TAGGAGCAATCCAATCTCTT+CGG 0.441117 tig0016736:+759 None:intergenic
CCAAGCTTATCGGCTTCCTC+TGG 0.444477 tig0016736:+1644 None:intergenic
CATCCAGCGTCTCCGTTGTA+AGG 0.448928 tig0016736:-1780 Msa1359780:CDS
CCACTGACTCCCGAAGAGAT+TGG 0.458973 tig0016736:-769 Msa1359780:CDS
AATGTGACGTGTCTAGGTTT+AGG 0.460189 tig0016736:+4246 None:intergenic
CTCCCTTGGCTTACCAAGGA+TGG 0.461393 tig0016736:-3998 Msa1359780:CDS
TCTATAGTGAAAGAGCTTCC+TGG 0.462447 tig0016736:-3159 Msa1359780:CDS
ATCCTGTCTGGCAAGATTCA+AGG 0.465671 tig0016736:-3326 Msa1359780:intron
AATAGTCATTTGATTCTGCT+TGG 0.470389 tig0016736:+1669 None:intergenic
GGGAAAGAGAATGACGAAAA+CGG 0.471070 tig0016736:+4437 None:intergenic
CAATCTGCGGTAGCATGAAC+TGG 0.471934 tig0016736:+3069 None:intergenic
CCAGAGGAAGCCGATAAGCT+TGG 0.472576 tig0016736:-1644 Msa1359780:CDS
AGGTTTATGGTGGAAAAGCT+AGG 0.473316 tig0016736:-513 Msa1359780:CDS
CCCAAAGGTTGGAAGAGATT+GGG 0.478014 tig0016736:+4405 None:intergenic
CAGCGCTGCCCGAAAAGTCT+CGG 0.480836 tig0016736:-3837 Msa1359780:CDS
CAGAGGAAGCCGATAAGCTT+GGG 0.483277 tig0016736:-1643 Msa1359780:CDS
ATACCGGCAGGTGATTTGGC+AGG 0.495911 tig0016736:-848 Msa1359780:CDS
GGATTGAACCAGCAGAAGAT+GGG 0.496714 tig0016736:-3787 Msa1359780:CDS
TCTCATCGCTTGACATTCAA+CGG 0.499133 tig0016736:-1815 Msa1359780:CDS
AGGATTGAACCAGCAGAAGA+TGG 0.499974 tig0016736:-3788 Msa1359780:CDS
TTATGGTGGAAAAGCTAGGT+TGG 0.500381 tig0016736:-509 Msa1359780:CDS
AACCAATCTGTGGTCTCCCT+TGG 0.504923 tig0016736:-4012 Msa1359780:CDS
TGTAGCAATGTGACGTGTCT+AGG 0.506331 tig0016736:+4240 None:intergenic
TAGACACGTCACATTGCTAC+AGG 0.507958 tig0016736:-4238 Msa1359780:CDS
GGGCAATATGCACAATGCTC+TGG 0.515544 tig0016736:-335 Msa1359780:intron
AGCTTGGGAAACAGCAAAGC+GGG 0.516102 tig0016736:-1628 Msa1359780:CDS
GATTGCTCCTAGCTGCTTTG+GGG 0.517479 tig0016736:-747 Msa1359780:CDS
AGCTGGGCAATAAACCTTGT+GGG 0.537721 tig0016736:+693 None:intergenic
TGCTCTAGCTAAATACCGGC+AGG 0.538557 tig0016736:-860 Msa1359780:CDS
AACTTGCTCTAGCTAAATAC+CGG 0.541940 tig0016736:-864 Msa1359780:CDS
GATGAAGAGTTGAGAAATCA+GGG 0.542902 tig0016736:-799 Msa1359780:CDS
TTCCCTGCCAAATCACCTGC+CGG 0.544202 tig0016736:+845 None:intergenic
TTTCCATCCTTGGTAAGCCA+AGG 0.550395 tig0016736:+3995 None:intergenic
CCAATCTCTTCGGGAGTCAG+TGG 0.550645 tig0016736:+769 None:intergenic
AGCCAAGGGAGACCACAGAT+TGG 0.555485 tig0016736:+4010 None:intergenic
TGGTCTCCCTTGGCTTACCA+AGG 0.559168 tig0016736:-4002 Msa1359780:CDS
AGAGCATTGTGCATATTGCC+CGG 0.559884 tig0016736:+337 None:intergenic
GTGAAGCACGACCCAAAGGT+TGG 0.560984 tig0016736:+4394 None:intergenic
CAGGATTCACTTCAAAATGC+GGG 0.561562 tig0016736:+3343 None:intergenic
GTGCTCCAAGAGTACTCACC+AGG 0.562409 tig0016736:+3141 None:intergenic
CAGTTCATGCTACCGCAGAT+TGG 0.569656 tig0016736:-3068 Msa1359780:CDS
TGACCTTACAACGGAGACGC+TGG 0.575199 tig0016736:+1777 None:intergenic
TTCCATCCTTGGTAAGCCAA+GGG 0.578859 tig0016736:+3996 None:intergenic
GCTGGTTCAATCCTCCATCA+AGG 0.585087 tig0016736:+3797 None:intergenic
ATGTATTGCCGGTTCTTCAG+AGG 0.591620 tig0016736:-3035 Msa1359780:intron
TCTAGTCTCTGCAGAGACAA+TGG 0.592187 tig0016736:-443 Msa1359780:CDS
TCATTGTGACAATTCTGAAG+CGG 0.592462 tig0016736:+4514 None:intergenic
GAAGGTGAAGCACGACCCAA+AGG 0.595361 tig0016736:+4390 None:intergenic
CGGAGACGCTGGATGTCTGA+TGG 0.599897 tig0016736:+1788 None:intergenic
ACAAGAGAGTACTATGCCAC+AGG 0.599956 tig0016736:-3120 Msa1359780:CDS
GATTGAACCAGCAGAAGATG+GGG 0.605571 tig0016736:-3786 Msa1359780:CDS
TCTCCTAATTCCTTAACGTG+TGG 0.606004 tig0016736:+1731 None:intergenic
AATGTCAAGCGATGAGAGAA+CGG 0.606541 tig0016736:+1821 None:intergenic
TGTTGAACCCCAAAGCAGCT+AGG 0.608877 tig0016736:+740 None:intergenic
TACCGGCAGGTGATTTGGCA+GGG 0.608982 tig0016736:-847 Msa1359780:CDS
GCGATGAGAGAACGGTGCAA+TGG 0.614616 tig0016736:+1829 None:intergenic
TGTAGCGAAGACGCTGAACA+AGG 0.614908 tig0016736:+1705 None:intergenic
ACTTTATCTTGCTTCCCACA+AGG 0.615688 tig0016736:-707 Msa1359780:intron
CAATCTCTTCGGGAGTCAGT+GGG 0.624514 tig0016736:+770 None:intergenic
AATGGCCAAAGTTAATGGAA+AGG 0.628911 tig0016736:-425 Msa1359780:CDS
TTGAAGTACAAACCAATCTG+TGG 0.642304 tig0016736:-4022 Msa1359780:CDS
ACAGGATTCACTTCAAAATG+CGG 0.644514 tig0016736:+3342 None:intergenic
TCTAGTAGCTCTAATGCCTG+TGG 0.656159 tig0016736:+3104 None:intergenic
TCACTATAGATACTTCGTCA+CGG 0.662049 tig0016736:+3172 None:intergenic
ATCAAATGACTATTTGCCAG+AGG 0.666329 tig0016736:-1660 Msa1359780:CDS
AGACACGTCACATTGCTACA+GGG 0.677204 tig0016736:-4237 Msa1359780:CDS
GCGCTGCCCGAAAAGTCTCG+GGG 0.696935 tig0016736:-3835 Msa1359780:CDS
CTTCAAAGTTGACCTTACAA+CGG 0.697428 tig0016736:+1768 None:intergenic
ATTGAACCAGCAGAAGATGG+GGG 0.706327 tig0016736:-3785 Msa1359780:intron
ATGAAGAGTTGAGAAATCAG+GGG 0.726296 tig0016736:-798 Msa1359780:CDS
AAGCTTGGGAAACAGCAAAG+CGG 0.733658 tig0016736:-1629 Msa1359780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTCTATTAAAATTC+AGG - tig0016736:653-672 Msa1359780:intron 10.0%
!! AACAAAAATTGAAAAATTAT+TGG + tig0016736:3201-3220 None:intergenic 10.0%
!!! TAAATTGTCATTTATATAAT+TGG + tig0016736:3580-3599 None:intergenic 10.0%
!! TTTAGATAAAATAGAGTATA+AGG + tig0016736:977-996 None:intergenic 15.0%
!!! ATCTTTTAAATAGAAAATGT+GGG + tig0016736:1157-1176 None:intergenic 15.0%
!!! TATCTTTTAAATAGAAAATG+TGG + tig0016736:1158-1177 None:intergenic 15.0%
!! ATAAAAAATTGAAGACATAA+AGG + tig0016736:1295-1314 None:intergenic 15.0%
!!! TATTTTCAGTTATTTTCTAT+AGG + tig0016736:1944-1963 None:intergenic 15.0%
!!! TATTATTTATATAGCTTGTT+TGG + tig0016736:2024-2043 None:intergenic 15.0%
!! TCTAAGAAAGAAAAATTATT+TGG - tig0016736:2263-2282 Msa1359780:intron 15.0%
!! TAAAATTCTAAATATGCTTA+CGG - tig0016736:2610-2629 Msa1359780:intron 15.0%
!!! ATGTTTTTTTCAGAAAATTA+AGG - tig0016736:3599-3618 Msa1359780:intron 15.0%
!!! TAAATGAGATTGTTTTGAAA+GGG - tig0016736:810-829 Msa1359780:CDS 20.0%
!! AAAGGTAATTAATACTTCAT+TGG + tig0016736:940-959 None:intergenic 20.0%
!! TGATTAGAATATGTCTTTAA+AGG + tig0016736:1116-1135 None:intergenic 20.0%
!!! TAAAATTTTGAATGTAACGT+TGG - tig0016736:1198-1217 Msa1359780:intron 20.0%
!! AAATAACAACTCAGTATAAA+TGG + tig0016736:1323-1342 None:intergenic 20.0%
!!! TCAACACATTTTCTATATAA+TGG + tig0016736:1629-1648 None:intergenic 20.0%
!!! ATTTCCATGATATAATTTGT+AGG - tig0016736:1682-1701 Msa1359780:CDS 20.0%
!! AAAACCTACAAATTATATCA+TGG + tig0016736:1689-1708 None:intergenic 20.0%
!! TAATCCATTGGAAAAAAATA+AGG - tig0016736:1782-1801 Msa1359780:CDS 20.0%
!! ACAGTTTAAGAAAAAATTCT+GGG - tig0016736:1807-1826 Msa1359780:CDS 20.0%
!! TTAGATTGAAAAATATGGAT+GGG + tig0016736:2112-2131 None:intergenic 20.0%
!! AGTTGTTAGATTGAAAAATA+TGG + tig0016736:2117-2136 None:intergenic 20.0%
!! TGATAACAAACAAAGAAAAT+AGG + tig0016736:2194-2213 None:intergenic 20.0%
!!! TATGTGCAATTTTTTGTTTT+AGG - tig0016736:2351-2370 Msa1359780:intron 20.0%
!! TGTGATATTTATAAGAATGA+AGG + tig0016736:2566-2585 None:intergenic 20.0%
!! ATTTATATAATTGGATCACA+AGG + tig0016736:3571-3590 None:intergenic 20.0%
!!! ATTCTATGTTTTTAGGTTTA+TGG - tig0016736:4042-4061 Msa1359780:intron 20.0%
!! CAATTTTTCACGATTAATTG+AGG + tig0016736:235-254 None:intergenic 25.0%
! TTTATGAATCACCTAATTGT+TGG - tig0016736:262-281 Msa1359780:intron 25.0%
!! GATTTTTGATACCAACAATT+AGG + tig0016736:276-295 None:intergenic 25.0%
! ATTAAAATGACACATACGAT+CGG + tig0016736:444-463 None:intergenic 25.0%
!!! TATATTCAAGTTTTCCTTGA+TGG - tig0016736:757-776 Msa1359780:CDS 25.0%
!!! GTAAATGAGATTGTTTTGAA+AGG - tig0016736:809-828 Msa1359780:CDS 25.0%
! TAATTTCATTGCAGAAATGA+AGG - tig0016736:835-854 Msa1359780:CDS 25.0%
! AATTTCATTGCAGAAATGAA+GGG - tig0016736:836-855 Msa1359780:CDS 25.0%
! GATTATGAGACAATAATTGA+TGG + tig0016736:1767-1786 None:intergenic 25.0%
! ATTATTGTCTCATAATCCAT+TGG - tig0016736:1770-1789 Msa1359780:CDS 25.0%
! GACAGTTTAAGAAAAAATTC+TGG - tig0016736:1806-1825 Msa1359780:CDS 25.0%
! GGGAAAAAAATTACAGTTTA+AGG - tig0016736:1909-1928 Msa1359780:intron 25.0%
! GTTAGATTGAAAAATATGGA+TGG + tig0016736:2113-2132 None:intergenic 25.0%
! CTATTTGAGTCAATAAACTA+TGG + tig0016736:2221-2240 None:intergenic 25.0%
!! ATTTTTCTTTCTTAGATCCT+AGG + tig0016736:2259-2278 None:intergenic 25.0%
!!! AAAATTATTTGGTTCTTCCA+AGG - tig0016736:2274-2293 Msa1359780:intron 25.0%
! ACTATGTAAATTCCAACATT+GGG + tig0016736:2325-2344 None:intergenic 25.0%
! AACTATGTAAATTCCAACAT+TGG + tig0016736:2326-2345 None:intergenic 25.0%
!!! TGTTTTAATAACTCCACATA+TGG - tig0016736:2494-2513 Msa1359780:intron 25.0%
! CGTAAATAATGCATATCTAA+AGG + tig0016736:2661-2680 None:intergenic 25.0%
! AATCTACAACATTTGAAAAC+AGG + tig0016736:2690-2709 None:intergenic 25.0%
!! CTTGTCTTTCTAATTTTACT+TGG - tig0016736:3044-3063 Msa1359780:CDS 25.0%
! TGTGATTACAGTATTATAAG+CGG - tig0016736:3085-3104 Msa1359780:CDS 25.0%
!!! GTCTGTTTTAAATACCTTTT+AGG - tig0016736:3330-3349 Msa1359780:CDS 25.0%
!! ATGTGTTTAAAATTTGAACG+AGG - tig0016736:3421-3440 Msa1359780:intron 25.0%
! TTTCTATTAACTGCAGTTTA+AGG - tig0016736:3520-3539 Msa1359780:intron 25.0%
!!! TGGATTGATTCTATGTTTTT+AGG - tig0016736:4035-4054 Msa1359780:intron 25.0%
!! CTTTTCTTATCTTCCATAAA+AGG + tig0016736:4105-4124 None:intergenic 25.0%
!! TGGTTTAAACGGTAAATTTT+GGG + tig0016736:4360-4379 None:intergenic 25.0%
!! TTGGTTTAAACGGTAAATTT+TGG + tig0016736:4361-4380 None:intergenic 25.0%
!! CAAAAGATGTTTGGTTTAAA+CGG + tig0016736:4371-4390 None:intergenic 25.0%
AAGAGATTGGGAATGAAAAA+GGG + tig0016736:154-173 None:intergenic 30.0%
AAATGGAAAATGAGGAGTTA+CGG + tig0016736:212-231 None:intergenic 30.0%
AATTGAGGAAATGGAAAATG+AGG + tig0016736:220-239 None:intergenic 30.0%
TTCACGATTAATTGAGGAAA+TGG + tig0016736:229-248 None:intergenic 30.0%
CAAAAATCGATTGTGATTTC+AGG - tig0016736:288-307 Msa1359780:intron 30.0%
AATGCTTCCAATACAATTGA+CGG - tig0016736:469-488 Msa1359780:CDS 30.0%
ACATGACACTTAATATGAGA+CGG + tig0016736:883-902 None:intergenic 30.0%
CTCATATTAAGTGTCATGTT+TGG - tig0016736:884-903 Msa1359780:CDS 30.0%
AAGGATATATCAGTGGAAAA+AGG + tig0016736:958-977 None:intergenic 30.0%
AGAGTATAAGGATATATCAG+TGG + tig0016736:965-984 None:intergenic 30.0%
ATTCAAGGTATATCTAGTGT+GGG - tig0016736:1257-1276 Msa1359780:intron 30.0%
! ATTTTCTGTATACCAATCTG+CGG + tig0016736:1515-1534 None:intergenic 30.0%
GTATACAGAAAATGTATTGC+CGG - tig0016736:1522-1541 Msa1359780:intron 30.0%
AAAACCTAAATGCATTTCAG+GGG + tig0016736:1605-1624 None:intergenic 30.0%
CAAAACCTAAATGCATTTCA+GGG + tig0016736:1606-1625 None:intergenic 30.0%
ATCATGGAAATCCATTGTAA+GGG + tig0016736:1673-1692 None:intergenic 30.0%
TATCATGGAAATCCATTGTA+AGG + tig0016736:1674-1693 None:intergenic 30.0%
!!! GTCTCCTTATTTTTTTCCAA+TGG + tig0016736:1789-1808 None:intergenic 30.0%
GTTTAAGAAAAAATTCTGGG+TGG - tig0016736:1810-1829 Msa1359780:CDS 30.0%
!! AAAAACAACACTGACTTGAT+TGG + tig0016736:1888-1907 None:intergenic 30.0%
!!! ATCAAGTCAGTGTTGTTTTT+TGG - tig0016736:1888-1907 Msa1359780:intron 30.0%
!!! TCAAGTCAGTGTTGTTTTTT+GGG - tig0016736:1889-1908 Msa1359780:intron 30.0%
!! TATTGACTCAAATAGTTGTC+AGG - tig0016736:2226-2245 Msa1359780:intron 30.0%
! ATTGACTCAAATAGTTGTCA+GGG - tig0016736:2227-2246 Msa1359780:intron 30.0%
! TTTTCTCGTTGATACAGTTA+TGG - tig0016736:2708-2727 Msa1359780:intron 30.0%
AATAGTCATTTGATTCTGCT+TGG + tig0016736:2902-2921 None:intergenic 30.0%
TGCCAGGATTCAAAAAATTA+TGG - tig0016736:3017-3036 Msa1359780:intron 30.0%
GCCAGGATTCAAAAAATTAT+GGG - tig0016736:3018-3037 Msa1359780:intron 30.0%
!!! ACCCATAATTTTTTGAATCC+TGG + tig0016736:3022-3041 None:intergenic 30.0%
!! TAAGCGGAATATAGTTTGTT+AGG - tig0016736:3101-3120 Msa1359780:CDS 30.0%
TATAACCAGAACTCTACAAT+AGG + tig0016736:3456-3475 None:intergenic 30.0%
TTAAGGCTCCTGTTAATTAA+TGG - tig0016736:3616-3635 Msa1359780:intron 30.0%
CAACTCTTCATCATTGAATT+GGG + tig0016736:3761-3780 None:intergenic 30.0%
TCAACTCTTCATCATTGAAT+TGG + tig0016736:3762-3781 None:intergenic 30.0%
!! GTTTACTTTTGAACTTAGTC+TGG - tig0016736:4015-4034 Msa1359780:CDS 30.0%
!!! CTATGTTTTTAGGTTTATGG+TGG - tig0016736:4045-4064 Msa1359780:intron 30.0%
!! AAGCACGTTATTTCCTTTTA+TGG - tig0016736:4089-4108 Msa1359780:intron 30.0%
! GGTTTAAACGGTAAATTTTG+GGG + tig0016736:4359-4378 None:intergenic 30.0%
! CTATTTCAGAATAAGAGCAT+AGG - tig0016736:4463-4482 Msa1359780:CDS 30.0%
! TCATTGTGACAATTCTGAAG+CGG + tig0016736:57-76 None:intergenic 35.0%
!! ATTTTTGAGAGTGGTTGAGT+TGG + tig0016736:99-118 None:intergenic 35.0%
!! CAAAAGCTGATTTTTGAGAG+TGG + tig0016736:108-127 None:intergenic 35.0%
GAAGAGATTGGGAATGAAAA+AGG + tig0016736:155-174 None:intergenic 35.0%
ATCGATTGTGATTTCAGGAA+TGG - tig0016736:293-312 Msa1359780:intron 35.0%
AGTGTAATGTACTCACAGTT+CGG + tig0016736:369-388 None:intergenic 35.0%
TTGTACACCGTCAATTGTAT+TGG + tig0016736:479-498 None:intergenic 35.0%
TTGAAGTACAAACCAATCTG+TGG - tig0016736:546-565 Msa1359780:intron 35.0%
TGAGTGCAAATCTGCATAAT+TGG - tig0016736:625-644 Msa1359780:intron 35.0%
!!! AGGACTGTTTTGTTTGTCAT+TGG - tig0016736:673-692 Msa1359780:intron 35.0%
! AATATAACCCCGAGACTTTT+CGG + tig0016736:743-762 None:intergenic 35.0%
!! ATTCAAGTTTTCCTTGATGG+AGG - tig0016736:760-779 Msa1359780:CDS 35.0%
ATGACACTTAATATGAGACG+GGG + tig0016736:881-900 None:intergenic 35.0%
CATGACACTTAATATGAGAC+GGG + tig0016736:882-901 None:intergenic 35.0%
ACAGGATTCACTTCAAAATG+CGG + tig0016736:1229-1248 None:intergenic 35.0%
!!! ATTTTGAAGTGAATCCTGTC+TGG - tig0016736:1230-1249 Msa1359780:intron 35.0%
GATTCAAGGTATATCTAGTG+TGG - tig0016736:1256-1275 Msa1359780:intron 35.0%
AACAACTCAGTATAAATGGC+TGG + tig0016736:1319-1338 None:intergenic 35.0%
TCACTATAGATACTTCGTCA+CGG + tig0016736:1399-1418 None:intergenic 35.0%
AAACCTAAATGCATTTCAGG+GGG + tig0016736:1604-1623 None:intergenic 35.0%
GCAAAACCTAAATGCATTTC+AGG + tig0016736:1607-1626 None:intergenic 35.0%
ATCTATTAAGACGATGCACT+AGG - tig0016736:1842-1861 Msa1359780:CDS 35.0%
! ACAAAGGTATAATACTGTGC+TGG + tig0016736:2053-2072 None:intergenic 35.0%
TTGACTCAAATAGTTGTCAG+GGG - tig0016736:2228-2247 Msa1359780:intron 35.0%
AAAACTTCCCACATAATCCT+TGG + tig0016736:2294-2313 None:intergenic 35.0%
TACAGCACTACATTAGAACT+AGG + tig0016736:2389-2408 None:intergenic 35.0%
ATCTAAAGGAAGACACTAAG+TGG + tig0016736:2647-2666 None:intergenic 35.0%
CTTCAAAGTTGACCTTACAA+CGG + tig0016736:2803-2822 None:intergenic 35.0%
ATCAAATGACTATTTGCCAG+AGG - tig0016736:2908-2927 Msa1359780:intron 35.0%
!!! CTTTTATGTAGAAGCATCAG+TGG + tig0016736:3301-3320 None:intergenic 35.0%
CACTGATGCTTCTACATAAA+AGG - tig0016736:3299-3318 Msa1359780:intron 35.0%
AAGCTGTAGTTACACCTAAA+AGG + tig0016736:3347-3366 None:intergenic 35.0%
GTCAGTGACCATTAATTAAC+AGG + tig0016736:3627-3646 None:intergenic 35.0%
ACCAAAATCACAAGCTGAAT+GGG + tig0016736:3668-3687 None:intergenic 35.0%
!! ATTCAGCTTGTGATTTTGGT+GGG - tig0016736:3668-3687 Msa1359780:intron 35.0%
! AACTTGCTCTAGCTAAATAC+CGG - tig0016736:3704-3723 Msa1359780:intron 35.0%
TGATGAAGAGTTGAGAAATC+AGG - tig0016736:3768-3787 Msa1359780:intron 35.0%
GATGAAGAGTTGAGAAATCA+GGG - tig0016736:3769-3788 Msa1359780:intron 35.0%
ATGAAGAGTTGAGAAATCAG+GGG - tig0016736:3770-3789 Msa1359780:intron 35.0%
AATATATCCTGTCATGAGCT+GGG + tig0016736:3894-3913 None:intergenic 35.0%
AATGGCCAAAGTTAATGGAA+AGG - tig0016736:4143-4162 Msa1359780:intron 35.0%
CTGAAGATGCAAAAGATGTT+TGG + tig0016736:4380-4399 None:intergenic 35.0%
! CAAACATCTTTTGCATCTTC+AGG - tig0016736:4378-4397 Msa1359780:intron 35.0%
!! TGCTCTTATTCTGAAATAGC+TGG + tig0016736:4462-4481 None:intergenic 35.0%
GGGACAGATAAGATTAAGAA+AGG - tig0016736:4534-4553 Msa1359780:five_prime_UTR 35.0%
GGGAAAGAGAATGACGAAAA+CGG + tig0016736:134-153 None:intergenic 40.0%
AATGTGACGTGTCTAGGTTT+AGG + tig0016736:325-344 None:intergenic 40.0%
! TTGCACTCACAAGGTGATTT+TGG + tig0016736:614-633 None:intergenic 40.0%
TATGCAGATTTGCACTCACA+AGG + tig0016736:623-642 None:intergenic 40.0%
CAGCGCTGCAATAATCAAAA+GGG + tig0016736:719-738 None:intergenic 40.0%
! ATATAACCCCGAGACTTTTC+GGG + tig0016736:742-761 None:intergenic 40.0%
CAGGATTCACTTCAAAATGC+GGG + tig0016736:1228-1247 None:intergenic 40.0%
TCTATAGTGAAAGAGCTTCC+TGG - tig0016736:1409-1428 Msa1359780:intron 40.0%
! TTCACATACCTCTGAAGAAC+CGG + tig0016736:1544-1563 None:intergenic 40.0%
ACTTAACCTCAAATTCTGCC+AGG - tig0016736:1566-1585 Msa1359780:intron 40.0%
TTTCCCCCTGAAATGCATTT+AGG - tig0016736:1598-1617 Msa1359780:CDS 40.0%
TTTGCAACTAGCCCTTACAA+TGG - tig0016736:1659-1678 Msa1359780:CDS 40.0%
CTCTTAGTGAACTTCCAAGT+AGG - tig0016736:2145-2164 Msa1359780:intron 40.0%
TGGTTCTTCCAAGGATTATG+TGG - tig0016736:2283-2302 Msa1359780:intron 40.0%
GGTTCTTCCAAGGATTATGT+GGG - tig0016736:2284-2303 Msa1359780:intron 40.0%
! TTTTCTCACAGTCCCAATGT+TGG - tig0016736:2310-2329 Msa1359780:intron 40.0%
TGCCTTCCATTGCAGTATTT+AGG - tig0016736:2412-2431 Msa1359780:intron 40.0%
GCCTTCCATTGCAGTATTTA+GGG - tig0016736:2413-2432 Msa1359780:intron 40.0%
TCCCTAAATACTGCAATGGA+AGG + tig0016736:2417-2436 None:intergenic 40.0%
TCCATTGCAGTATTTAGGGA+AGG - tig0016736:2417-2436 Msa1359780:intron 40.0%
ACCTTCCCTAAATACTGCAA+TGG + tig0016736:2421-2440 None:intergenic 40.0%
TTGCAGTATTTAGGGAAGGT+TGG - tig0016736:2421-2440 Msa1359780:intron 40.0%
! AACAGTCTTTTGCAGATGTG+AGG + tig0016736:2478-2497 None:intergenic 40.0%
ATAAGAATGAAGGTGAGCCT+TGG + tig0016736:2556-2575 None:intergenic 40.0%
AATGTCAAGCGATGAGAGAA+CGG + tig0016736:2750-2769 None:intergenic 40.0%
TCTCATCGCTTGACATTCAA+CGG - tig0016736:2753-2772 Msa1359780:intron 40.0%
GAACTTTGTTCCACACGTTA+AGG - tig0016736:2827-2846 Msa1359780:intron 40.0%
GTTCCACACGTTAAGGAATT+AGG - tig0016736:2834-2853 Msa1359780:intron 40.0%
TCTCCTAATTCCTTAACGTG+TGG + tig0016736:2840-2859 None:intergenic 40.0%
!! TTGCTGTTTCCCAAGCTTAT+CGG + tig0016736:2937-2956 None:intergenic 40.0%
! GTCTTCATTTGCATTTTGCC+AGG - tig0016736:3001-3020 Msa1359780:intron 40.0%
TTAGGCAACAACTTGCATGT+TGG - tig0016736:3119-3138 Msa1359780:CDS 40.0%
TAGGTGTAACTACAGCTTGA+AGG - tig0016736:3349-3368 Msa1359780:CDS 40.0%
GCTAATACATTCACACACAC+AGG + tig0016736:3393-3412 None:intergenic 40.0%
ATCCTCCTATTGTAGAGTTC+TGG - tig0016736:3448-3467 Msa1359780:intron 40.0%
AACCAGAACTCTACAATAGG+AGG + tig0016736:3453-3472 None:intergenic 40.0%
CACCAAAATCACAAGCTGAA+TGG + tig0016736:3669-3688 None:intergenic 40.0%
! CATTCAGCTTGTGATTTTGG+TGG - tig0016736:3667-3686 Msa1359780:intron 40.0%
!! TTCAGCTTGTGATTTTGGTG+GGG - tig0016736:3669-3688 Msa1359780:intron 40.0%
TAGGAGCAATCCAATCTCTT+CGG + tig0016736:3812-3831 None:intergenic 40.0%
ACTTTATCTTGCTTCCCACA+AGG - tig0016736:3861-3880 Msa1359780:intron 40.0%
CAATATATCCTGTCATGAGC+TGG + tig0016736:3895-3914 None:intergenic 40.0%
! AGGTTTATGGTGGAAAAGCT+AGG - tig0016736:4055-4074 Msa1359780:intron 40.0%
! TTATGGTGGAAAAGCTAGGT+TGG - tig0016736:4059-4078 Msa1359780:intron 40.0%
GAGACAATGGCCAAAGTTAA+TGG - tig0016736:4138-4157 Msa1359780:intron 40.0%
CGATGCCTTTCCATTAACTT+TGG + tig0016736:4151-4170 None:intergenic 40.0%
TGTATTGCTGCAAGACATGT+AGG - tig0016736:4329-4348 Msa1359780:intron 40.0%
! ACATCTTTTGCATCTTCAGG+TGG - tig0016736:4381-4400 Msa1359780:CDS 40.0%
GAAGACTATCAGACCAAACA+TGG - tig0016736:4426-4445 Msa1359780:CDS 40.0%
! AGACCAAACATGGCACTTTT+GGG - tig0016736:4436-4455 Msa1359780:CDS 40.0%
! TTCAGAATAAGAGCATAGGC+TGG - tig0016736:4467-4486 Msa1359780:CDS 40.0%
! TGATGGACATAAGAACAGAC+AGG - tig0016736:4513-4532 Msa1359780:exon 40.0%
GATGGACATAAGAACAGACA+GGG - tig0016736:4514-4533 Msa1359780:exon 40.0%
TCCCAATCTCTTCCAACCTT+TGG - tig0016736:162-181 Msa1359780:CDS 45.0%
CCCAAAGGTTGGAAGAGATT+GGG + tig0016736:166-185 None:intergenic 45.0%
CCCAATCTCTTCCAACCTTT+GGG - tig0016736:163-182 Msa1359780:CDS 45.0%
ACCCAAAGGTTGGAAGAGAT+TGG + tig0016736:167-186 None:intergenic 45.0%
GGAGTTACGGAGAAGATAGA+AGG + tig0016736:199-218 None:intergenic 45.0%
TGTAGCAATGTGACGTGTCT+AGG + tig0016736:331-350 None:intergenic 45.0%
TAGACACGTCACATTGCTAC+AGG - tig0016736:330-349 Msa1359780:intron 45.0%
AGACACGTCACATTGCTACA+GGG - tig0016736:331-350 Msa1359780:intron 45.0%
TTCCATCCTTGGTAAGCCAA+GGG + tig0016736:575-594 None:intergenic 45.0%
TTTCCATCCTTGGTAAGCCA+AGG + tig0016736:576-595 None:intergenic 45.0%
!! ACAAGGTGATTTTGGAGGCA+CGG + tig0016736:606-625 None:intergenic 45.0%
! CACTCACAAGGTGATTTTGG+AGG + tig0016736:611-630 None:intergenic 45.0%
GCAGCGCTGCAATAATCAAA+AGG + tig0016736:720-739 None:intergenic 45.0%
AGGATTGAACCAGCAGAAGA+TGG - tig0016736:780-799 Msa1359780:CDS 45.0%
GGATTGAACCAGCAGAAGAT+GGG - tig0016736:781-800 Msa1359780:CDS 45.0%
GATTGAACCAGCAGAAGATG+GGG - tig0016736:782-801 Msa1359780:CDS 45.0%
ATTGAACCAGCAGAAGATGG+GGG - tig0016736:783-802 Msa1359780:CDS 45.0%
ATCCTGTCTGGCAAGATTCA+AGG - tig0016736:1242-1261 Msa1359780:intron 45.0%
TACCTTGAATCTTGCCAGAC+AGG + tig0016736:1247-1266 None:intergenic 45.0%
!! ACAAGAGAGTACTATGCCAC+AGG - tig0016736:1448-1467 Msa1359780:intron 45.0%
!! TCTAGTAGCTCTAATGCCTG+TGG + tig0016736:1467-1486 None:intergenic 45.0%
!! ATGTATTGCCGGTTCTTCAG+AGG - tig0016736:1533-1552 Msa1359780:intron 45.0%
GCATTTCAGGGGGAAAATGA+GGG + tig0016736:1594-1613 None:intergenic 45.0%
TGCATTTCAGGGGGAAAATG+AGG + tig0016736:1595-1614 None:intergenic 45.0%
AATATGGATGGGTGACGTGA+CGG + tig0016736:2101-2120 None:intergenic 45.0%
TAGTGAACTTCCAAGTAGGC+AGG - tig0016736:2149-2168 Msa1359780:intron 45.0%
!! ACAAAAAGTGCCTGCCTACT+TGG + tig0016736:2162-2181 None:intergenic 45.0%
AGTTGTCAGGGGATATACCT+AGG - tig0016736:2239-2258 Msa1359780:intron 45.0%
GGAAGACACTAAGTGGCTTA+TGG + tig0016736:2640-2659 None:intergenic 45.0%
AAGCTTGGGAAACAGCAAAG+CGG - tig0016736:2939-2958 Msa1359780:intron 45.0%
TAATGGTCACTGACATGTGC+AGG - tig0016736:3633-3652 Msa1359780:intron 45.0%
TCACTGACATGTGCAGGATA+TGG - tig0016736:3639-3658 Msa1359780:intron 45.0%
! GCCCATTCAGCTTGTGATTT+TGG - tig0016736:3664-3683 Msa1359780:intron 45.0%
!! TCAGCTTGTGATTTTGGTGG+GGG - tig0016736:3670-3689 Msa1359780:intron 45.0%
CTAAATACCGGCAGGTGATT+TGG - tig0016736:3716-3735 Msa1359780:intron 45.0%
AGGAGCAATCCAATCTCTTC+GGG + tig0016736:3811-3830 None:intergenic 45.0%
AGCTGGGCAATAAACCTTGT+GGG + tig0016736:3878-3897 None:intergenic 45.0%
TTTATTGCCCAGCTCATGAC+AGG - tig0016736:3884-3903 Msa1359780:intron 45.0%
TCTAGTCTCTGCAGAGACAA+TGG - tig0016736:4125-4144 Msa1359780:intron 45.0%
GCACAGCGACATCTTCATTT+CGG - tig0016736:4203-4222 Msa1359780:intron 45.0%
CATCTTCATTTCGGCTTCTC+CGG - tig0016736:4212-4231 Msa1359780:intron 45.0%
ATCTTCATTTCGGCTTCTCC+GGG - tig0016736:4213-4232 Msa1359780:intron 45.0%
!! AGAGCATTGTGCATATTGCC+CGG + tig0016736:4234-4253 None:intergenic 45.0%
! CAGACCAAACATGGCACTTT+TGG - tig0016736:4435-4454 Msa1359780:CDS 45.0%
AACCAATCTGTGGTCTCCCT+TGG - tig0016736:556-575 Msa1359780:intron 50.0%
CGGTACAAGGTTTCCATCCT+TGG + tig0016736:586-605 None:intergenic 50.0%
!! GATTTTGGAGGCACGGTACA+AGG + tig0016736:599-618 None:intergenic 50.0%
! GCTGGTTCAATCCTCCATCA+AGG + tig0016736:774-793 None:intergenic 50.0%
TACTTACCCCCATCTTCTGC+TGG + tig0016736:792-811 None:intergenic 50.0%
AGCTTCCTGGTGAGTACTCT+TGG - tig0016736:1422-1441 Msa1359780:intron 50.0%
CAATCTGCGGTAGCATGAAC+TGG + tig0016736:1502-1521 None:intergenic 50.0%
CAGTTCATGCTACCGCAGAT+TGG - tig0016736:1500-1519 Msa1359780:intron 50.0%
AGGGAACCTGGCAGAATTTG+AGG + tig0016736:1575-1594 None:intergenic 50.0%
TGTGATCAGGAGGCCATATG+TGG + tig0016736:2510-2529 None:intergenic 50.0%
CATATGGCCTCCTGATCACA+CGG - tig0016736:2510-2529 Msa1359780:intron 50.0%
TGTAGCGAAGACGCTGAACA+AGG + tig0016736:2866-2885 None:intergenic 50.0%
CAGAGGAAGCCGATAAGCTT+GGG - tig0016736:2925-2944 Msa1359780:intron 50.0%
AGCTTGGGAAACAGCAAAGC+GGG - tig0016736:2940-2959 Msa1359780:intron 50.0%
TGCTCTAGCTAAATACCGGC+AGG - tig0016736:3708-3727 Msa1359780:intron 50.0%
CAATCTCTTCGGGAGTCAGT+GGG + tig0016736:3801-3820 None:intergenic 50.0%
TGGATTGCTCCTAGCTGCTT+TGG - tig0016736:3819-3838 Msa1359780:CDS 50.0%
! GGATTGCTCCTAGCTGCTTT+GGG - tig0016736:3820-3839 Msa1359780:CDS 50.0%
! GATTGCTCCTAGCTGCTTTG+GGG - tig0016736:3821-3840 Msa1359780:CDS 50.0%
TGTTGAACCCCAAAGCAGCT+AGG + tig0016736:3831-3850 None:intergenic 50.0%
GAGCTGGGCAATAAACCTTG+TGG + tig0016736:3879-3898 None:intergenic 50.0%
GGGCAATATGCACAATGCTC+TGG - tig0016736:4233-4252 Msa1359780:CDS 50.0%
!! TGGCCCAAAAGTGCCATGTT+TGG + tig0016736:4442-4461 None:intergenic 50.0%
CTGGTCAGAATTTCAGCGTG+CGG - tig0016736:4486-4505 Msa1359780:CDS 50.0%
TTTCAGCGTGCGGTTCTTGA+TGG - tig0016736:4496-4515 Msa1359780:CDS 50.0%
GTGAAGCACGACCCAAAGGT+TGG + tig0016736:177-196 None:intergenic 55.0%
GAAGGTGAAGCACGACCCAA+AGG + tig0016736:181-200 None:intergenic 55.0%
AGCCAAGGGAGACCACAGAT+TGG + tig0016736:561-580 None:intergenic 55.0%
TGGTCTCCCTTGGCTTACCA+AGG - tig0016736:566-585 Msa1359780:intron 55.0%
CTCCCTTGGCTTACCAAGGA+TGG - tig0016736:570-589 Msa1359780:intron 55.0%
!! GTGCTCCAAGAGTACTCACC+AGG + tig0016736:1430-1449 None:intergenic 55.0%
AGGGGGAAAATGAGGGAACC+TGG + tig0016736:1587-1606 None:intergenic 55.0%
CAGGTGGCAAGTGGCAACAA+AGG + tig0016736:2069-2088 None:intergenic 55.0%
ACAGACTGACAGGTGGCAAG+TGG + tig0016736:2078-2097 None:intergenic 55.0%
GTTGCTACCGTGTGATCAGG+AGG + tig0016736:2520-2539 None:intergenic 55.0%
GGAGTTGCTACCGTGTGATC+AGG + tig0016736:2523-2542 None:intergenic 55.0%
CAACTCCATTCATCGCGCCA+AGG - tig0016736:2536-2555 Msa1359780:intron 55.0%
GCGATGAGAGAACGGTGCAA+TGG + tig0016736:2742-2761 None:intergenic 55.0%
CATCCAGCGTCTCCGTTGTA+AGG - tig0016736:2788-2807 Msa1359780:intron 55.0%
TGACCTTACAACGGAGACGC+TGG + tig0016736:2794-2813 None:intergenic 55.0%
!! CCAAGCTTATCGGCTTCCTC+TGG + tig0016736:2927-2946 None:intergenic 55.0%
CCAGAGGAAGCCGATAAGCT+TGG - tig0016736:2924-2943 Msa1359780:intron 55.0%
! ATACCGGCAGGTGATTTGGC+AGG - tig0016736:3720-3739 Msa1359780:intron 55.0%
! TACCGGCAGGTGATTTGGCA+GGG - tig0016736:3721-3740 Msa1359780:intron 55.0%
TTCCCTGCCAAATCACCTGC+CGG + tig0016736:3726-3745 None:intergenic 55.0%
CCAATCTCTTCGGGAGTCAG+TGG + tig0016736:3802-3821 None:intergenic 55.0%
!! CCACTGACTCCCGAAGAGAT+TGG - tig0016736:3799-3818 Msa1359780:CDS 55.0%
CAGCGCTGCCCGAAAAGTCT+CGG - tig0016736:731-750 Msa1359780:CDS 60.0%
AGCGCTGCCCGAAAAGTCTC+GGG - tig0016736:732-751 Msa1359780:CDS 60.0%
!! GTGACGGACAGACTGACAGG+TGG + tig0016736:2085-2104 None:intergenic 60.0%
!! GACGTGACGGACAGACTGAC+AGG + tig0016736:2088-2107 None:intergenic 60.0%
GTGAGCCTTGGCGCGATGAA+TGG + tig0016736:2544-2563 None:intergenic 60.0%
CGGAGACGCTGGATGTCTGA+TGG + tig0016736:2783-2802 None:intergenic 60.0%
GCGCTGCCCGAAAAGTCTCG+GGG - tig0016736:733-752 Msa1359780:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0016736 gene 2 4588 2 ID=Msa1359780;Name=Msa1359780
tig0016736 mRNA 2 4588 2 ID=Msa1359780-mRNA-1;Parent=Msa1359780;Name=Msa1359780-mRNA-1;_AED=0.25;_eAED=0.25;_QI=71|1|0.9|1|1|1|10|0|511
tig0016736 exon 2 190 2 ID=Msa1359780-mRNA-1:exon:11579;Parent=Msa1359780-mRNA-1
tig0016736 exon 336 533 336 ID=Msa1359780-mRNA-1:exon:11578;Parent=Msa1359780-mRNA-1
tig0016736 exon 708 935 708 ID=Msa1359780-mRNA-1:exon:11577;Parent=Msa1359780-mRNA-1
tig0016736 exon 1595 1865 1595 ID=Msa1359780-mRNA-1:exon:11576;Parent=Msa1359780-mRNA-1
tig0016736 exon 3036 3239 3036 ID=Msa1359780-mRNA-1:exon:11575;Parent=Msa1359780-mRNA-1
tig0016736 exon 3327 3415 3327 ID=Msa1359780-mRNA-1:exon:11574;Parent=Msa1359780-mRNA-1
tig0016736 exon 3786 3856 3786 ID=Msa1359780-mRNA-1:exon:11573;Parent=Msa1359780-mRNA-1
tig0016736 exon 3967 4048 3967 ID=Msa1359780-mRNA-1:exon:11572;Parent=Msa1359780-mRNA-1
tig0016736 exon 4218 4280 4218 ID=Msa1359780-mRNA-1:exon:11571;Parent=Msa1359780-mRNA-1
tig0016736 exon 4380 4588 4380 ID=Msa1359780-mRNA-1:exon:11570;Parent=Msa1359780-mRNA-1
tig0016736 five_prime_UTR 4518 4588 4518 ID=Msa1359780-mRNA-1:five_prime_utr;Parent=Msa1359780-mRNA-1
tig0016736 CDS 4380 4517 4380 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
tig0016736 CDS 4218 4280 4218 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
tig0016736 CDS 3967 4048 3967 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
tig0016736 CDS 3786 3856 3786 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
tig0016736 CDS 3327 3415 3327 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
tig0016736 CDS 3036 3239 3036 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
tig0016736 CDS 1595 1865 1595 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
tig0016736 CDS 708 935 708 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
tig0016736 CDS 336 533 336 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
tig0016736 CDS 2 190 2 ID=Msa1359780-mRNA-1:cds;Parent=Msa1359780-mRNA-1
Gene Sequence

>Msa1359780

ATGAAGCTTCATCATCAATTGAACCAACTCAACCACTCTCAAAAATCAGCTTTTGTTGCCGTTTTCGTCATTCTCTTTCCCTTTTTCATTCCCAATCTCTTCCAACCTTTGGGTCGTGCTTCACCTTCTATCTTCTCCGAATGGATTGCTCCTAAACCTAGACACGTCACATTGCTACAGGGTGCTCTACAACGCCGAACTTCTGTTGAAGTACAAACCAATCTGTGGTCTCCCTTGGCTTACCAAGGATGGAAACCTTGTACCGTGCCTCCAAAATCACCTTCGCTGCCCGAAAAGTCTCGGGGTTATATTCAAGTTTTCCTTGATGGAGGATTGAACCAGCAGAAGATGGGGATATGTGATGCTGTTGCTGTTGCTAAAATTTTGAATGTAACGTTGGTGATCCCGCATTTTGAAGTGAATCCTGTCTGGCAAGATTCAAGTTCATTTGCAGATATATTTGACGTTGATCACTTCATTGATGTTCTCCGTGACGAAGTATCTATAGTGAAAGAGCTTCCTGGTGAGTACTCTTGGAGCACAAGAGAGTACTATGCCACAGGCATTAGAGCTACTAGAATTAAAACAGCGCCAGTTCATGCTACCGCAGATTGGTATACAGAAAATGTATTGCCGGTTCTTCAGAGTTATGGTGTTGCTGCCATTGCACCGTTCTCTCATCGCTTGACATTCAACGGCTTACCATCAGACATCCAGCGTCTCCGTTGTAAGGTCAACTTTGAAGCACTGAACTTTGTTCCACACGTTAAGGAATTAGGAGATATCCTTGTTCAGCGTCTTCGCTACAATTCTAGTATCAACCAAGCAGAATCAAATGACTATTTGCCAGAGGAAGCCGATAAGCTTGGGAAACAGCAAAGCGGGAAGTTTGTTGTGTTGCATCTGCGTTTTGATAAAGATATGGCAGCCCATTCAGCTTGTGATTTTGGTGGGGGTAAAGCTGAGAAACTTGCTCTAGCTAAATACCGGCAGGTGATTTGGCAGGGAAGAGTATTGAATTCCCAATTCAATGATGAAGAGTTGAGAAATCAGGGGCGTTGCCCACTGACTCCCGAAGAGATTGGATTGCTCCTAGCTGCTTTGGGGTTCAACAACAGAACACGACTTTATCTTGCTTCCCACAAGGTTTATGGTGGAAAAGCTAGGTTGGAAACTTTAAGCACGTTATTTCCTTTTATGGAAGATAAGAAAAGTCTAGTCTCTGCAGAGACAATGGCCAAAGTTAATGGAAAGGCATCGCTATTAGCTGCTGTTGATTATTATGTGAGCATGCACAGCGACATCTTCATTTCGGCTTCTCCGGGCAATATGCACAATGCTCTGGTGGCACAGCGTGCTTATAAGAATCTGAAGACTATCAGACCAAACATGGCACTTTTGGGCCAGCTATTTCAGAATAAGAGCATAGGCTGGTCAGAATTTCAGCGTGCGGTTCTTGATGGACATAAGAACAGACAGGGACAGATAAGATTAAGAAAGGAGAAGCAATCAATTTATACATACCCTGCTCCT
Protein sequence

>Msa1359780

MKLHHQLNQLNHSQKSAFVAVFVILFPFFIPNLFQPLGRASPSIFSEWIAPKPRHVTLLQGALQRRTSVEVQTNLWSPLAYQGWKPCTVPPKSPSLPEKSRGYIQVFLDGGLNQQKMGICDAVAVAKILNVTLVIPHFEVNPVWQDSSSFADIFDVDHFIDVLRDEVSIVKELPGEYSWSTREYYATGIRATRIKTAPVHATADWYTENVLPVLQSYGVAAIAPFSHRLTFNGLPSDIQRLRCKVNFEALNFVPHVKELGDILVQRLRYNSSINQAESNDYLPEEADKLGKQQSGKFVVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVIWQGRVLNSQFNDEELRNQGRCPLTPEEIGLLLAALGFNNRTRLYLASHKVYGGKARLETLSTLFPFMEDKKSLVSAETMAKVNGKASLLAAVDYYVSMHSDIFISASPGNMHNALVAQRAYKNLKTIRPNMALLGQLFQNKSIGWSEFQRAVLDGHKNRQGQIRLRKEKQSIYTYPAP