AlfalfaGEDB | Msa1363680

M. sativa cultivar zhongmu-4 / Msa1363680

KEGG: -
GO: -
PFAM: PF18345.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363680	AES63110.2	95.669	254	11	0	19	272	5	258	5.54e-165	467

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363680	sp\|Q7F8R0\|C3H14_ORYSJ	55.212	259	101	4	19	269	45	296	2.25e-89	270

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363680	G7ICA7	95.669	254	11	0	19	272	5	258	2.65e-165	467

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1363680	TF	C3H

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1363680	Msa1370940	0.919861	2.650285e-87	-8.615850e-47
Msa1363680	Msa1396540	0.971157	1.006001e-132	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363680	MtrunA17_Chr1g0213721	95.669	254	11	0	19	272	5	258	1.03e-168	466
Msa1363680	MtrunA17_Chr7g0258611	57.955	264	90	8	19	269	46	301	1.74e-94	280
Msa1363680	MtrunA17_Chr1g0175201	57.364	258	98	6	20	272	43	293	7.18e-94	278

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363680	AT3G12130.1	41.603	262	83	6	19	272	48	247	1.56e-51	169
Msa1363680	AT5G06770.6	43.750	208	102	5	75	272	15	217	2.96e-47	157
Msa1363680	AT5G06770.1	43.750	208	102	5	75	272	37	239	5.04e-47	157
Msa1363680	AT5G06770.3	43.500	200	98	5	83	272	18	212	4.60e-44	149
Msa1363680	AT5G06770.2	43.500	200	98	5	83	272	18	212	4.60e-44	149
Msa1363680	AT5G06770.4	43.500	200	98	5	83	272	18	212	4.60e-44	149
Msa1363680	AT3G12130.2	51.634	153	63	2	128	272	26	175	3.01e-43	145
Msa1363680	AT5G06770.5	51.449	138	66	1	135	272	31	167	6.26e-43	144

Showing 1 to 8 of 8 entries

Previous1Next

Find 262 sgRNAs with CRISPR-Local

Find 547 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTGTCTGCCTTGGC+TGG	0.403487	tig0018045:+78271	None:intergenic
AAACAAATAGGTAGGTAAAA+TGG	0.316135	tig0018045:-79263	Msa1363680:intron
AAACCAAGCATTGCCATTGA+AGG	0.537045	tig0018045:+82960	None:intergenic
AAAGATCAATGTAATTGAGG+GGG	0.632417	tig0018045:-75565	Msa1363680:three_prime_UTR
AAAGTTGCAACCCTCTTGTT+AGG	0.375421	tig0018045:-79163	Msa1363680:intron
AAATACAACAGAGTAACAAA+TGG	0.571455	tig0018045:+76719	None:intergenic
AAATAGGTAGGTAAAATGGA+AGG	0.631160	tig0018045:-79259	Msa1363680:intron
AAATGAGAATTACAGAGAAG+AGG	0.581301	tig0018045:-79236	Msa1363680:three_prime_UTR
AAATGGCATCCCTCGCCAAA+TGG	0.473103	tig0018045:+81474	None:intergenic
AACAAGTTCAATACAGCTGA+AGG	0.604829	tig0018045:-81300	Msa1363680:CDS

Showing 1 to 10 of 262 entries

Previous1 2 3 4 5…27Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAATGTTAGTGCAACAGAAA+TGG	-	tig0018045:75832-75851	Msa1363680:three_prime_UTR	30.0%
ATTCATAACGTACTTTGTTC+AGG	-	tig0018045:76053-76072	Msa1363680:three_prime_UTR	30.0%
ACAAGACAAGATAATTCATG+TGG	+	tig0018045:76235-76254	None:intergenic	30.0%
GTGTAGTGAATGATGATATT+AGG	-	tig0018045:76353-76372	Msa1363680:three_prime_UTR	30.0%
TTTGAGCTGAAATAAACCAT+TGG	-	tig0018045:76405-76424	Msa1363680:three_prime_UTR	30.0%
ATTCAGCATCAACATAAGAT+GGG	+	tig0018045:76450-76469	None:intergenic	30.0%
ATCTTTAACCTTTCTTTGCT+AGG	-	tig0018045:76490-76509	Msa1363680:three_prime_UTR	30.0%
ACATTTGGATTTCTACCAAT+TGG	+	tig0018045:77227-77246	None:intergenic	30.0%
AGAGCTATCATTGGAAAAAA+TGG	-	tig0018045:77536-77555	Msa1363680:intron	30.0%
AAGCAAATCTATCACATAAC+AGG	-	tig0018045:77569-77588	Msa1363680:intron	30.0%

Showing 1 to 10 of 547 entries

Previous1 2 3 4 5…55Next

Chromosome	Type	Strat	End	Strand	Name
tig0018045	gene	75505	83119	75505	ID=Msa1363680;Name=Msa1363680
tig0018045	mRNA	75505	83119	75505	ID=Msa1363680-mRNA-1;Parent=Msa1363680;Name=Msa1363680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=103\|1\|1\|1\|0.4\|0.16\|6\|2415\|272
tig0018045	exon	75505	76875	75505	ID=Msa1363680-mRNA-1:exon:13638;Parent=Msa1363680-mRNA-1
tig0018045	exon	78205	78761	78205	ID=Msa1363680-mRNA-1:exon:13637;Parent=Msa1363680-mRNA-1
tig0018045	exon	78861	79093	78861	ID=Msa1363680-mRNA-1:exon:13636;Parent=Msa1363680-mRNA-1
tig0018045	exon	79164	79275	79164	ID=Msa1363680-mRNA-1:exon:13635;Parent=Msa1363680-mRNA-1
tig0018045	exon	80602	81509	80602	ID=Msa1363680-mRNA-1:exon:13634;Parent=Msa1363680-mRNA-1
tig0018045	exon	82964	83119	82964	ID=Msa1363680-mRNA-1:exon:13633;Parent=Msa1363680-mRNA-1
tig0018045	five_prime_UTR	83017	83119	83017	ID=Msa1363680-mRNA-1:five_prime_utr;Parent=Msa1363680-mRNA-1
tig0018045	CDS	82964	83016	82964	ID=Msa1363680-mRNA-1:cds;Parent=Msa1363680-mRNA-1
tig0018045	CDS	80744	81509	80744	ID=Msa1363680-mRNA-1:cds;Parent=Msa1363680-mRNA-1
tig0018045	three_prime_UTR	80602	80743	80602	ID=Msa1363680-mRNA-1:three_prime_utr;Parent=Msa1363680-mRNA-1
tig0018045	three_prime_UTR	79164	79275	79164	ID=Msa1363680-mRNA-1:three_prime_utr;Parent=Msa1363680-mRNA-1
tig0018045	three_prime_UTR	78861	79093	78861	ID=Msa1363680-mRNA-1:three_prime_utr;Parent=Msa1363680-mRNA-1
tig0018045	three_prime_UTR	78205	78761	78205	ID=Msa1363680-mRNA-1:three_prime_utr;Parent=Msa1363680-mRNA-1
tig0018045	three_prime_UTR	75505	76875	75505	ID=Msa1363680-mRNA-1:three_prime_utr;Parent=Msa1363680-mRNA-1

Gene Sequence

>Msa1363680

ATGGATCGTCATCATCATCGCAAGAGGGGAACCACCTTCAATGGCAATGCTTGCACCTCTGGATGTCCATTTGGCGAGGGATGCCATTTCCTGCATTATGTTCCTGGGGGCTTTAAAGCTGTCTCTCAGATGATCAATGTCGGTAGCAGTCCTGCTATTCCACCAATTGGTAGAAATCCAAATGTTCCACCATCCTTCCCAGACGGTTCTTCTCCACCAGTTGCTAAGACCCGGTTGTGCAACAAGTTCAATACAGCTGAAGGTCGCAAATTTGGGGATAAATGTCACTTTGCCCATGGTGAGTGGGAGCGTGGCAGGCCCACGGTCCCTGCATATGAAGATACTCGCGCCATGGGACAAATGCAAAGCAGCAGTGTTGATGGGAGAATTGAGCCCCCACCTCCAGCTCATGGAGCTGCTGCCGGTTTTGGAGTGTCGGCCACTGCAAAAGTTAATATTAATGCTACCCTTGCTAGAGCTATCATTGGAAAAAATGGTGTTAACTCCAAGCAAATCTATCACATAACAGGTGCTAAACTTTCCATTAGGGAACATGACTCAGATCCTAACCTTAGAAATATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTCCATGACCTTATTCTAAATGTGAGTTCGGTCTCTGGACCTCCAGGAAAAAACATTACTTCACAGACTTCTGCCCCTGCAAACAACTTCAAGACCAAGCTGTGTGAAAACTTTACCAAAGGATCCTGCACTTTTGGGGAAAGGTGCCACTTCGCGCATGGAACAGATGAATTATGCAAGCCTGGAATGTGA

Protein sequence

>Msa1363680

MDRHHHRKRGTTFNGNACTSGCPFGEGCHFLHYVPGGFKAVSQMINVGSSPAIPPIGRNPNVPPSFPDGSSPPVAKTRLCNKFNTAEGRKFGDKCHFAHGEWERGRPTVPAYEDTRAMGQMQSSSVDGRIEPPPPAHGAAAGFGVSATAKVNINATLARAIIGKNGVNSKQIYHITGAKLSIREHDSDPNLRNIELEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPANNFKTKLCENFTKGSCTFGERCHFAHGTDELCKPGM*