Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371050 | XP_003592835.2 | 98.537 | 410 | 4 | 1 | 1 | 410 | 1 | 408 | 0.0 | 824 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371050 | sp|Q9C5H6|CSTR3_ARATH | 82.222 | 405 | 67 | 2 | 7 | 409 | 3 | 404 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371050 | G7IB00 | 98.537 | 410 | 4 | 1 | 1 | 410 | 1 | 408 | 0.0 | 824 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1371050 | Msa1414940 | 0.805586 | 1.242529e-49 | -8.615850e-47 |
| Msa1123890 | Msa1371050 | 0.810958 | 8.897128e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371050 | MtrunA17_Chr1g0213541 | 98.537 | 410 | 4 | 1 | 1 | 410 | 1 | 408 | 0.0 | 824 |
| Msa1371050 | MtrunA17_Chr7g0275441 | 28.657 | 335 | 217 | 7 | 58 | 380 | 12 | 336 | 6.18e-42 | 150 |
| Msa1371050 | MtrunA17_Chr5g0448741 | 31.525 | 295 | 192 | 4 | 58 | 352 | 62 | 346 | 5.95e-38 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371050 | AT3G59360.1 | 82.222 | 405 | 67 | 2 | 7 | 409 | 3 | 404 | 0.0 | 684 |
| Msa1371050 | AT3G59360.2 | 82.222 | 405 | 67 | 2 | 7 | 409 | 3 | 404 | 0.0 | 684 |
| Msa1371050 | AT2G43240.1 | 80.788 | 406 | 72 | 3 | 7 | 409 | 3 | 405 | 0.0 | 671 |
| Msa1371050 | AT2G43240.2 | 76.847 | 406 | 69 | 4 | 7 | 409 | 3 | 386 | 0.0 | 626 |
| Msa1371050 | AT5G41760.1 | 30.323 | 310 | 205 | 4 | 58 | 363 | 15 | 317 | 3.44e-42 | 152 |
| Msa1371050 | AT5G41760.2 | 30.323 | 310 | 205 | 4 | 58 | 363 | 15 | 317 | 3.44e-42 | 152 |
Find 113 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACAATGAACTTTCTTAT+TGG | 0.163113 | tig0019144:-140130 | Msa1371050:CDS |
| GCAGAAAGTATTTCTTTAAA+AGG | 0.212098 | tig0019144:-138982 | Msa1371050:three_prime_UTR |
| ATAAAGGCAGGCATGAATTA+TGG | 0.240762 | tig0019144:-138955 | Msa1371050:three_prime_UTR |
| AATGGATTCGTATGAGCTTT+TGG | 0.245059 | tig0019144:-138869 | Msa1371050:three_prime_UTR |
| AACAGTTGCCACAATCTTTA+CGG | 0.298548 | tig0019144:-140185 | Msa1371050:CDS |
| CCAGGAAAACAAAGATAATA+AGG | 0.301807 | tig0019144:+138786 | None:intergenic |
| TGTGAGGAAAAGAAAGAAAA+AGG | 0.302701 | tig0019144:+143749 | None:intergenic |
| TTGCAGAACTTATTCTTGTA+TGG | 0.304604 | tig0019144:-140994 | Msa1371050:intron |
| TTTCGTCTTTATGACAATAA+TGG | 0.308546 | tig0019144:-138671 | Msa1371050:three_prime_UTR |
| ATAGCATCTGCAGTACTATT+TGG | 0.316407 | tig0019144:-140160 | Msa1371050:CDS |
| CAGTGTCTGTCATTCAAAAT+TGG | 0.328810 | tig0019144:-143205 | Msa1371050:CDS |
| TTTCTTTCTCTTGTCTTGTC+TGG | 0.344370 | tig0019144:-143576 | Msa1371050:five_prime_UTR |
| ATTGAATTTGCCATCGACTT+TGG | 0.372049 | tig0019144:+143032 | None:intergenic |
| GCTCTTGCTCTCTTGCTCAT+TGG | 0.372366 | tig0019144:-141858 | Msa1371050:CDS |
| GAAGATTATTCATTCCAGTT+TGG | 0.382351 | tig0019144:-143870 | Msa1371050:five_prime_UTR |
| CCCGAGGGAACTACAGCTTT+AGG | 0.385032 | tig0019144:-141807 | Msa1371050:CDS |
| TGCAAATACCAACGAGTAAT+GGG | 0.385280 | tig0019144:-143239 | Msa1371050:CDS |
| TATTGTTATGCTTCTTCTCC+AGG | 0.385601 | tig0019144:-142956 | Msa1371050:CDS |
| CTCAAATCTGAATTGAGTTC+CGG | 0.395191 | tig0019144:-143473 | Msa1371050:five_prime_UTR |
| TGCAGATCGAGTTCATTAAT+AGG | 0.401141 | tig0019144:-143273 | Msa1371050:intron |
| GGTGGTGATTGTATGCTTGT+TGG | 0.402559 | tig0019144:-143081 | Msa1371050:CDS |
| CTTAACATCTTCACAGTAGC+AGG | 0.405425 | tig0019144:+142418 | None:intergenic |
| TTTCATTTCTCGCACCTCAT+TGG | 0.405503 | tig0019144:-143822 | Msa1371050:five_prime_UTR |
| TAAAGGCAGGCATGAATTAT+GGG | 0.405732 | tig0019144:-138954 | Msa1371050:three_prime_UTR |
| GAAGATGTTAAGCAATTTGA+AGG | 0.419020 | tig0019144:-142407 | Msa1371050:intron |
| AGGCTAGGAATCAAAAGGTT+GGG | 0.422597 | tig0019144:-142936 | Msa1371050:CDS |
| AACTTATTCTTGTATGGGTA+TGG | 0.424681 | tig0019144:-140988 | Msa1371050:CDS |
| GCTCCAGTTGGACTCGATCT+AGG | 0.431354 | tig0019144:-143418 | Msa1371050:intron |
| CTACCTAGATCGAGTCCAAC+TGG | 0.432356 | tig0019144:+143415 | None:intergenic |
| ATCTAATCTATACATACATT+TGG | 0.432686 | tig0019144:+143894 | None:intergenic |
| GATATATGCTTGTATCATAC+TGG | 0.434298 | tig0019144:+141568 | None:intergenic |
| ACAGTTGCCACAATCTTTAC+GGG | 0.435413 | tig0019144:-140184 | Msa1371050:CDS |
| ATCGTGTCCCACTCGATGAC+TGG | 0.436358 | tig0019144:+139409 | None:intergenic |
| TCTTTCTTCTTCAAATATGC+AGG | 0.440976 | tig0019144:-140359 | Msa1371050:intron |
| TTAGGTCTTCCTGTCACAAT+GGG | 0.441568 | tig0019144:-141789 | Msa1371050:CDS |
| AAAGTGGAGTCAAACCAAAC+TGG | 0.443127 | tig0019144:+143856 | None:intergenic |
| ACGTGTTCTTAACATCTTGT+TGG | 0.444072 | tig0019144:-143106 | Msa1371050:CDS |
| TTAAAAGGTTTCATAAAGGC+AGG | 0.455352 | tig0019144:-138967 | Msa1371050:three_prime_UTR |
| TTCTTTAAAAGGTTTCATAA+AGG | 0.458537 | tig0019144:-138971 | Msa1371050:three_prime_UTR |
| TTTATAGCATACAGAAATGC+TGG | 0.460893 | tig0019144:+142747 | None:intergenic |
| ATAACACAATATAGATAGAA+TGG | 0.462984 | tig0019144:+138746 | None:intergenic |
| AGCAGCTTTGATATCCTTGA+AGG | 0.463788 | tig0019144:-140440 | Msa1371050:CDS |
| TGAAATGAAACAAAGTAAAG+TGG | 0.467559 | tig0019144:+143840 | None:intergenic |
| TTCAAGGATATCAAAGCTGC+TGG | 0.472728 | tig0019144:+140442 | None:intergenic |
| TTGGTGATATCTCATAGCTA+TGG | 0.474375 | tig0019144:-139070 | Msa1371050:three_prime_UTR |
| AAATTACAGTAGGTTGATCT+AGG | 0.474404 | tig0019144:+139364 | None:intergenic |
| CTTAACATCTTGTTGGTTGG+TGG | 0.476254 | tig0019144:-143099 | Msa1371050:CDS |
| ACCTAAAGCTGTAGTTCCCT+CGG | 0.477389 | tig0019144:+141806 | None:intergenic |
| GCAGGTCACTGTTCCATCGA+TGG | 0.478459 | tig0019144:-141622 | Msa1371050:intron |
| TGCAGAACTTATTCTTGTAT+GGG | 0.479020 | tig0019144:-140993 | Msa1371050:intron |
| ATGCAAATACCAACGAGTAA+TGG | 0.480513 | tig0019144:-143240 | Msa1371050:CDS |
| TTGGACATATAGACTAGAAT+AGG | 0.480549 | tig0019144:+143051 | None:intergenic |
| CTCTATTTCTACATTCATGC+AGG | 0.493339 | tig0019144:-142899 | Msa1371050:intron |
| ACTGGAACTGCATGATGTTC+AGG | 0.496160 | tig0019144:-139898 | Msa1371050:CDS |
| ATTGACGGTTGTTTGTGATC+TGG | 0.503499 | tig0019144:+143441 | None:intergenic |
| TACAGTAGGTTGATCTAGGT+GGG | 0.508440 | tig0019144:+139368 | None:intergenic |
| TTGTGTTAATTTCAGGTCAA+AGG | 0.508664 | tig0019144:-139567 | Msa1371050:intron |
| GAGTCCAACTGGAGCATTGA+CGG | 0.512735 | tig0019144:+143426 | None:intergenic |
| CTTTGGTTCAATCTAATCAA+CGG | 0.514358 | tig0019144:+143516 | None:intergenic |
| CTATCTCAAGTTTGTCATGC+AGG | 0.515777 | tig0019144:-142721 | Msa1371050:intron |
| TCTCCAGGCTAGGAATCAAA+AGG | 0.520205 | tig0019144:-142941 | Msa1371050:CDS |
| TTGATCTAGGTGGGGAGAAG+TGG | 0.522193 | tig0019144:+139377 | None:intergenic |
| AGATATGCACCCATTGTGAC+AGG | 0.522971 | tig0019144:+141780 | None:intergenic |
| TGATACAAGCATATATCTGC+AGG | 0.523762 | tig0019144:-141562 | Msa1371050:intron |
| TTATGCTTCTTCTCCAGGCT+AGG | 0.529554 | tig0019144:-142951 | Msa1371050:CDS |
| TAACACAATATAGATAGAAT+GGG | 0.530010 | tig0019144:+138747 | None:intergenic |
| TCTTCAGCAACGGAAAGCAT+TGG | 0.531150 | tig0019144:+138910 | None:intergenic |
| TTTAGGTCTTCCTGTCACAA+TGG | 0.533195 | tig0019144:-141790 | Msa1371050:CDS |
| AATGTAGAAATAGAGAGAAG+AGG | 0.533587 | tig0019144:+142907 | None:intergenic |
| CAGGCTAGGAATCAAAAGGT+TGG | 0.538438 | tig0019144:-142937 | Msa1371050:CDS |
| TGCATATTTGAAGAAGAAAG+AGG | 0.539452 | tig0019144:+140361 | None:intergenic |
| GTTCTTAACATCTTGTTGGT+TGG | 0.543154 | tig0019144:-143102 | Msa1371050:CDS |
| CGTATTCATCTCAATGCACC+AGG | 0.543335 | tig0019144:-140098 | Msa1371050:intron |
| GAATTATGGGCATCGTGAGC+TGG | 0.544786 | tig0019144:-138941 | Msa1371050:three_prime_UTR |
| GGCTAGGAATCAAAAGGTTG+GGG | 0.547534 | tig0019144:-142935 | Msa1371050:CDS |
| CCTAAAGCTGTAGTTCCCTC+GGG | 0.555774 | tig0019144:+141807 | None:intergenic |
| TGTGATCTGGAACGAGCTGC+CGG | 0.562255 | tig0019144:+143454 | None:intergenic |
| ACATATAGACTAGAATAGGC+TGG | 0.564747 | tig0019144:+143055 | None:intergenic |
| GTTCATTAATAGGATAGGAT+AGG | 0.566731 | tig0019144:-143263 | Msa1371050:five_prime_UTR |
| TTCAGATTTGAGAGGTTCCG+AGG | 0.572149 | tig0019144:+143484 | None:intergenic |
| GTCTATATGTCCAAAGTCGA+TGG | 0.572398 | tig0019144:-143042 | Msa1371050:CDS |
| AACCAAAGAAAAGAATTCCT+CGG | 0.574999 | tig0019144:-143501 | Msa1371050:five_prime_UTR |
| TGCTATGCCCGTAAAGATTG+TGG | 0.575181 | tig0019144:+140177 | None:intergenic |
| ATCGAGTTCATTAATAGGAT+AGG | 0.579006 | tig0019144:-143268 | Msa1371050:five_prime_UTR |
| ATTGCAAACAATGCTGCACA+AGG | 0.580792 | tig0019144:-140392 | Msa1371050:CDS |
| TCTATCATCCCATTACTCGT+TGG | 0.581724 | tig0019144:+143231 | None:intergenic |
| AACAATAGCAAAGAAAACCT+TGG | 0.588310 | tig0019144:+142972 | None:intergenic |
| AGATGAACAGAATGGTGCAC+TGG | 0.588644 | tig0019144:-139916 | Msa1371050:CDS |
| GAACTCAATTCAGATTTGAG+AGG | 0.595180 | tig0019144:+143476 | None:intergenic |
| GGTTGTGAGGTAAATATACC+AGG | 0.598681 | tig0019144:+138768 | None:intergenic |
| TATAGATAGAATGGGTTGTG+AGG | 0.607540 | tig0019144:+138755 | None:intergenic |
| AGCATATTCATTATAAACAG+AGG | 0.610728 | tig0019144:+141599 | None:intergenic |
| AAAGTCAGAGATGAACAGAA+TGG | 0.611541 | tig0019144:-139924 | Msa1371050:CDS |
| TCTATCAAAATCTTCAGCAA+CGG | 0.611950 | tig0019144:+138900 | None:intergenic |
| ACAACCGTCAATGCTCCAGT+TGG | 0.612175 | tig0019144:-143430 | Msa1371050:five_prime_UTR |
| TTATAAACAGAGGCCATCGA+TGG | 0.613925 | tig0019144:+141609 | None:intergenic |
| AGCATACAGAAATGCTGGAA+CGG | 0.619165 | tig0019144:+142752 | None:intergenic |
| TTACAGTAGGTTGATCTAGG+TGG | 0.619853 | tig0019144:+139367 | None:intergenic |
| TCAAGGATATCAAAGCTGCT+GGG | 0.628835 | tig0019144:+140443 | None:intergenic |
| ATACTTGTTATGTGTTTGTG+AGG | 0.634328 | tig0019144:+143733 | None:intergenic |
| ATTGTTTGCAATCAATAACA+TGG | 0.634744 | tig0019144:+140403 | None:intergenic |
| TTTCCAGGCCAGTCATCGAG+TGG | 0.634917 | tig0019144:-139417 | Msa1371050:intron |
| GAAATGCTGGAACGGCGAGA+AGG | 0.635005 | tig0019144:+142760 | None:intergenic |
| TCTGCGGAAGTATCCCAGAA+AGG | 0.638492 | tig0019144:+139000 | None:intergenic |
| ATGATGTTCAGGAGAAGCAA+AGG | 0.641668 | tig0019144:-139887 | Msa1371050:intron |
| ACAGTAGGTTGATCTAGGTG+GGG | 0.644320 | tig0019144:+139369 | None:intergenic |
| GTTTGCAATCAATAACATGG+TGG | 0.646678 | tig0019144:+140406 | None:intergenic |
| GGCAGCTGGAGCAAATGAAG+AGG | 0.652098 | tig0019144:-139528 | Msa1371050:intron |
| TTCCAGGCCAGTCATCGAGT+GGG | 0.653249 | tig0019144:-139416 | Msa1371050:intron |
| TCAGCTACGATCTTTACCCG+AGG | 0.675784 | tig0019144:-141823 | Msa1371050:CDS |
| TATTACGACTTTAAACTGTG+CGG | 0.677500 | tig0019144:+139046 | None:intergenic |
| TTGCAAACAATGCTGCACAA+GGG | 0.705464 | tig0019144:-140391 | Msa1371050:CDS |
| TGACACGTGATGGACCAATG+AGG | 0.831468 | tig0019144:+143808 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATATTATTATTATT+TGG | + | tig0019144:138892-138911 | None:intergenic | 0.0% |
| !! | CATAAAAGAATAAAAATTAA+AGG | + | tig0019144:140352-140371 | None:intergenic | 10.0% |
| !! | TAATAATACTAATCAATATA+CGG | + | tig0019144:140860-140879 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAAAATCATAAA+TGG | - | tig0019144:141051-141070 | Msa1371050:intron | 10.0% |
| !! | TGAAGTAAAATAAAAATAAA+TGG | - | tig0019144:141455-141474 | Msa1371050:intron | 10.0% |
| !! | GAAGTAAAATAAAAATAAAT+GGG | - | tig0019144:141456-141475 | Msa1371050:intron | 10.0% |
| !!! | AAACTAAATTTTTTATTAGA+TGG | - | tig0019144:141965-141984 | Msa1371050:intron | 10.0% |
| !!! | TTATAGATTGTTTTATTTTT+CGG | - | tig0019144:143078-143097 | Msa1371050:CDS | 10.0% |
| !! | AATAAAAATTAAAGGAGAAA+AGG | + | tig0019144:140344-140363 | None:intergenic | 15.0% |
| !!! | TATATAAACCATAATTTTCT+GGG | + | tig0019144:142801-142820 | None:intergenic | 15.0% |
| !!! | ATATATAAACCATAATTTTC+TGG | + | tig0019144:142802-142821 | None:intergenic | 15.0% |
| !!! | TATAGATTGTTTTATTTTTC+GGG | - | tig0019144:143079-143098 | Msa1371050:CDS | 15.0% |
| !! | ACTTAATTCAAATAAAAAGA+AGG | + | tig0019144:143239-143258 | None:intergenic | 15.0% |
| !! | ATATATAAAAATAGATAACC+AGG | + | tig0019144:143276-143295 | None:intergenic | 15.0% |
| !! | ATCTAATCTATACATACATT+TGG | + | tig0019144:138680-138699 | None:intergenic | 20.0% |
| !!! | TAGAAGTAATCCTATTTTTA+TGG | + | tig0019144:139441-139460 | None:intergenic | 20.0% |
| !! | TTAAAAAATTAACACTGATG+GGG | + | tig0019144:139570-139589 | None:intergenic | 20.0% |
| !! | GTTAAAAAATTAACACTGAT+GGG | + | tig0019144:139571-139590 | None:intergenic | 20.0% |
| !! | AGTTAAAAAATTAACACTGA+TGG | + | tig0019144:139572-139591 | None:intergenic | 20.0% |
| !! | TAGCATAAAAGGTTATATAT+GGG | + | tig0019144:139882-139901 | None:intergenic | 20.0% |
| !!! | AGAAAATTTTGGTAAAACAA+TGG | + | tig0019144:140313-140332 | None:intergenic | 20.0% |
| !!! | AAACTTTTGAATTATTTTGC+AGG | - | tig0019144:140931-140950 | Msa1371050:intron | 20.0% |
| !!! | TTTTGGTCAACAATTTAATT+AGG | - | tig0019144:141210-141229 | Msa1371050:intron | 20.0% |
| !! | CTAACATGATTTAATTGTAA+TGG | - | tig0019144:141345-141364 | Msa1371050:intron | 20.0% |
| !!! | TTTAAGAGTTCATCTTTTAA+GGG | + | tig0019144:141670-141689 | None:intergenic | 20.0% |
| !!! | ATTTAAGAGTTCATCTTTTA+AGG | + | tig0019144:141671-141690 | None:intergenic | 20.0% |
| !! | TTAACAATGAACTTTCTTAT+TGG | - | tig0019144:142441-142460 | Msa1371050:intron | 20.0% |
| !!! | ATATAAACCATAATTTTCTG+GGG | + | tig0019144:142800-142819 | None:intergenic | 20.0% |
| !!! | AAAGGATTCGTTTTTAAATA+TGG | - | tig0019144:143022-143041 | Msa1371050:CDS | 20.0% |
| !! | CATATTAATCACAAAAACAA+GGG | + | tig0019144:143130-143149 | None:intergenic | 20.0% |
| !! | AAGGAAAAAAAAATTACAGT+AGG | + | tig0019144:143220-143239 | None:intergenic | 20.0% |
| !!! | AATTTTCGAAGAATGTTTTT+TGG | - | tig0019144:143482-143501 | Msa1371050:five_prime_UTR | 20.0% |
| !!! | TTTTAAAGAAATACTTTCTG+CGG | + | tig0019144:143590-143609 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAAGGTTTCATAA+AGG | - | tig0019144:143600-143619 | Msa1371050:five_prime_UTR | 20.0% |
| !! | TAACACAATATAGATAGAAT+GGG | + | tig0019144:143827-143846 | None:intergenic | 20.0% |
| !! | ATAACACAATATAGATAGAA+TGG | + | tig0019144:143828-143847 | None:intergenic | 20.0% |
| ! | TGAAATGAAACAAAGTAAAG+TGG | + | tig0019144:138734-138753 | None:intergenic | 25.0% |
| ! | GAAAAGAAAGAAAAAGGAAA+AGG | + | tig0019144:138819-138838 | None:intergenic | 25.0% |
| ! | TGCATATCTATCTTATTCAA+TGG | - | tig0019144:139223-139242 | Msa1371050:intron | 25.0% |
| ! | ATCATCAAAAACTGTATCAA+GGG | - | tig0019144:139405-139424 | Msa1371050:CDS | 25.0% |
| !!! | TTTTTTAACTGAGATTACCA+AGG | - | tig0019144:139582-139601 | Msa1371050:intron | 25.0% |
| ! | CTAGCATAAAAGGTTATATA+TGG | + | tig0019144:139883-139902 | None:intergenic | 25.0% |
| ! | CATTCTTATTCTAGCATAAA+AGG | + | tig0019144:139893-139912 | None:intergenic | 25.0% |
| !! | TACGGATTCTTGATTTTATA+GGG | + | tig0019144:139958-139977 | None:intergenic | 25.0% |
| !! | TTACGGATTCTTGATTTTAT+AGG | + | tig0019144:139959-139978 | None:intergenic | 25.0% |
| !! | AGGAAGTAAGAAGAAAATTT+TGG | + | tig0019144:140324-140343 | None:intergenic | 25.0% |
| !!! | TTTATGCTGTTTTCTTACAA+TGG | - | tig0019144:140366-140385 | Msa1371050:CDS | 25.0% |
| !! | AGTAATAGCACTTTTGTTAA+AGG | - | tig0019144:140486-140505 | Msa1371050:intron | 25.0% |
| ! | GGATTTCAATTTGATAAACT+CGG | + | tig0019144:140620-140639 | None:intergenic | 25.0% |
| ! | AAGCAATTAAGATTTATGTG+AGG | + | tig0019144:140641-140660 | None:intergenic | 25.0% |
| !!! | CAATTTTTCAGCTAGATTAA+AGG | + | tig0019144:140669-140688 | None:intergenic | 25.0% |
| !! | TGATTTATTCTTTTCTACAG+TGG | - | tig0019144:140687-140706 | Msa1371050:intron | 25.0% |
| !! | GATTTATTCTTTTCTACAGT+GGG | - | tig0019144:140688-140707 | Msa1371050:intron | 25.0% |
| ! | AATACTAATCAATATACGGA+AGG | + | tig0019144:140856-140875 | None:intergenic | 25.0% |
| ! | AGCATATTCATTATAAACAG+AGG | + | tig0019144:140975-140994 | None:intergenic | 25.0% |
| ! | TTATCATGTCCTTATAATGT+TGG | - | tig0019144:141143-141162 | Msa1371050:intron | 25.0% |
| !! | TTATGCCTTTTCATGTATTT+TGG | - | tig0019144:141193-141212 | Msa1371050:intron | 25.0% |
| ! | ATAAGAGAGAAATGTATCAA+TGG | - | tig0019144:141286-141305 | Msa1371050:intron | 25.0% |
| ! | TATCAATGGAAATATAACCT+TGG | - | tig0019144:141300-141319 | Msa1371050:intron | 25.0% |
| !! | CATGATTTAATTGTAATGGA+CGG | - | tig0019144:141349-141368 | Msa1371050:intron | 25.0% |
| !!! | GTTTTAGTTCATGAGTAAAA+TGG | + | tig0019144:141705-141724 | None:intergenic | 25.0% |
| !! | TTTAGTTTATATGAATCCCT+TGG | + | tig0019144:141953-141972 | None:intergenic | 25.0% |
| !! | TTTTCTATCAATAGATGACT+CGG | + | tig0019144:142005-142024 | None:intergenic | 25.0% |
| ! | ATTGTTTGCAATCAATAACA+TGG | + | tig0019144:142171-142190 | None:intergenic | 25.0% |
| !! | ATATGCGTCTACTTAATTTT+GGG | - | tig0019144:142773-142792 | Msa1371050:CDS | 25.0% |
| !! | TATAAACCATAATTTTCTGG+GGG | + | tig0019144:142799-142818 | None:intergenic | 25.0% |
| !!! | TTTCTAAGAGTTTTAGTTGT+TGG | - | tig0019144:142908-142927 | Msa1371050:CDS | 25.0% |
| ! | GCATATTAATCACAAAAACA+AGG | + | tig0019144:143131-143150 | None:intergenic | 25.0% |
| ! | TCATAAATCATTAGAAAGTG+GGG | + | tig0019144:143404-143423 | None:intergenic | 25.0% |
| ! | GTCATAAATCATTAGAAAGT+GGG | + | tig0019144:143405-143424 | None:intergenic | 25.0% |
| !!! | GCAGAAAGTATTTCTTTAAA+AGG | - | tig0019144:143589-143608 | Msa1371050:five_prime_UTR | 25.0% |
| !! | TTTTGATAGAGCATAGAAAA+TGG | - | tig0019144:143684-143703 | Msa1371050:five_prime_UTR | 25.0% |
| ! | TTTCGTCTTTATGACAATAA+TGG | - | tig0019144:143900-143919 | Msa1371050:five_prime_UTR | 25.0% |
| GAAGATTATTCATTCCAGTT+TGG | - | tig0019144:138701-138720 | Msa1371050:three_prime_UTR | 30.0% | |
| TGTGAGGAAAAGAAAGAAAA+AGG | + | tig0019144:138825-138844 | None:intergenic | 30.0% | |
| !! | ATACTTGTTATGTGTTTGTG+AGG | + | tig0019144:138841-138860 | None:intergenic | 30.0% |
| ! | CTTTGGTTCAATCTAATCAA+CGG | + | tig0019144:139058-139077 | None:intergenic | 30.0% |
| AACCAAAGAAAAGAATTCCT+CGG | - | tig0019144:139070-139089 | Msa1371050:three_prime_UTR | 30.0% | |
| ATCGAGTTCATTAATAGGAT+AGG | - | tig0019144:139303-139322 | Msa1371050:intron | 30.0% | |
| GTTCATTAATAGGATAGGAT+AGG | - | tig0019144:139308-139327 | Msa1371050:intron | 30.0% | |
| CATCATCAAAAACTGTATCA+AGG | - | tig0019144:139404-139423 | Msa1371050:CDS | 30.0% | |
| CTTATGATCGCCATAAAAAT+AGG | - | tig0019144:139428-139447 | Msa1371050:intron | 30.0% | |
| TTGGACATATAGACTAGAAT+AGG | + | tig0019144:139523-139542 | None:intergenic | 30.0% | |
| AACAATAGCAAAGAAAACCT+TGG | + | tig0019144:139602-139621 | None:intergenic | 30.0% | |
| AATGTAGAAATAGAGAGAAG+AGG | + | tig0019144:139667-139686 | None:intergenic | 30.0% | |
| TTTATAGCATACAGAAATGC+TGG | + | tig0019144:139827-139846 | None:intergenic | 30.0% | |
| ! | TTTAGAACAGCGTTGAATTA+CGG | + | tig0019144:139976-139995 | None:intergenic | 30.0% |
| TAATACTCTAACAAGCAATG+AGG | + | tig0019144:140012-140031 | None:intergenic | 30.0% | |
| ! | TCATTGCTTGTTAGAGTATT+AGG | - | tig0019144:140011-140030 | Msa1371050:intron | 30.0% |
| ACATATCATGCATCACTATA+AGG | + | tig0019144:140065-140084 | None:intergenic | 30.0% | |
| GAAGATGTTAAGCAATTTGA+AGG | - | tig0019144:140164-140183 | Msa1371050:CDS | 30.0% | |
| ! | TTTTCTTACAATGGTTCCTT+GGG | - | tig0019144:140375-140394 | Msa1371050:CDS | 30.0% |
| !!! | GAAGTTGAACCTGTTTTTAA+TGG | - | tig0019144:140432-140451 | Msa1371050:CDS | 30.0% |
| !!! | TTGAACCTGTTTTTAATGGT+TGG | - | tig0019144:140436-140455 | Msa1371050:CDS | 30.0% |
| ! | AATAGCACTTTTGTTAAAGG+TGG | - | tig0019144:140489-140508 | Msa1371050:intron | 30.0% |
| TGACCTGAATGATAGAAAAA+CGG | + | tig0019144:140525-140544 | None:intergenic | 30.0% | |
| ATAAGATCCGTCATGTATAT+AGG | - | tig0019144:140549-140568 | Msa1371050:intron | 30.0% | |
| TATAGGATAAGGGATTTAAG+AGG | - | tig0019144:140566-140585 | Msa1371050:intron | 30.0% | |
| GATATATGCTTGTATCATAC+TGG | + | tig0019144:141006-141025 | None:intergenic | 30.0% | |
| ! | TTCAAAATCATGTTTCTGCA+AGG | - | tig0019144:141112-141131 | Msa1371050:intron | 30.0% |
| ! | AATACATGAAAAGGCATAAC+TGG | + | tig0019144:141192-141211 | None:intergenic | 30.0% |
| GTTGACCAAAATACATGAAA+AGG | + | tig0019144:141201-141220 | None:intergenic | 30.0% | |
| GAAGAATCATCTTTATATCC+TGG | - | tig0019144:141422-141441 | Msa1371050:intron | 30.0% | |
| TTGCAGAACTTATTCTTGTA+TGG | - | tig0019144:141577-141596 | Msa1371050:CDS | 30.0% | |
| TGCAGAACTTATTCTTGTAT+GGG | - | tig0019144:141578-141597 | Msa1371050:CDS | 30.0% | |
| AACTTATTCTTGTATGGGTA+TGG | - | tig0019144:141583-141602 | Msa1371050:CDS | 30.0% | |
| ! | AGAAGCAAATTCCTGATTTT+GGG | + | tig0019144:141737-141756 | None:intergenic | 30.0% |
| ! | AAGAAGCAAATTCCTGATTT+TGG | + | tig0019144:141738-141757 | None:intergenic | 30.0% |
| AAGTTAAAGATCCAAGACAA+GGG | + | tig0019144:141810-141829 | None:intergenic | 30.0% | |
| TGCATATTTGAAGAAGAAAG+AGG | + | tig0019144:142213-142232 | None:intergenic | 30.0% | |
| TCTTTCTTCTTCAAATATGC+AGG | - | tig0019144:142212-142231 | Msa1371050:intron | 30.0% | |
| ATTGCCTTCTATATTGTAGA+TGG | - | tig0019144:142291-142310 | Msa1371050:intron | 30.0% | |
| GTATCTGCAACATATTGAAT+AGG | + | tig0019144:142345-142364 | None:intergenic | 30.0% | |
| AAATGGAATTCGAAAGATTC+TGG | - | tig0019144:142497-142516 | Msa1371050:intron | 30.0% | |
| TGCACAGTGTTATAACAAAA+TGG | + | tig0019144:142597-142616 | None:intergenic | 30.0% | |
| AATGGTGAAAAAAACTGAAG+AGG | + | tig0019144:142623-142642 | None:intergenic | 30.0% | |
| ! | CATATGCGTCTACTTAATTT+TGG | - | tig0019144:142772-142791 | Msa1371050:CDS | 30.0% |
| TAGTCAACATGTCATAAAGT+CGG | + | tig0019144:142833-142852 | None:intergenic | 30.0% | |
| ! | ATTGTTATTGTAGAGGAAGA+AGG | + | tig0019144:142981-143000 | None:intergenic | 30.0% |
| ! | ACAAGCAATTGTTATTGTAG+AGG | + | tig0019144:142988-143007 | None:intergenic | 30.0% |
| CAATTGCTTGTGTTAATTTC+AGG | - | tig0019144:142997-143016 | Msa1371050:CDS | 30.0% | |
| ! | TTGTGTTAATTTCAGGTCAA+AGG | - | tig0019144:143004-143023 | Msa1371050:CDS | 30.0% |
| TGATTAATATGCACATTTCC+AGG | - | tig0019144:143139-143158 | Msa1371050:CDS | 30.0% | |
| !! | AAATTACAGTAGGTTGATCT+AGG | + | tig0019144:143210-143229 | None:intergenic | 30.0% |
| GGTCATAAATCATTAGAAAG+TGG | + | tig0019144:143406-143425 | None:intergenic | 30.0% | |
| ATATGTGTGCATATTATTGC+AGG | - | tig0019144:143459-143478 | Msa1371050:five_prime_UTR | 30.0% | |
| TATTACGACTTTAAACTGTG+CGG | + | tig0019144:143528-143547 | None:intergenic | 30.0% | |
| ! | AAAATATTTTGCTGCCTTTC+TGG | - | tig0019144:143557-143576 | Msa1371050:five_prime_UTR | 30.0% |
| ! | AAATATTTTGCTGCCTTTCT+GGG | - | tig0019144:143558-143577 | Msa1371050:five_prime_UTR | 30.0% |
| TTAAAAGGTTTCATAAAGGC+AGG | - | tig0019144:143604-143623 | Msa1371050:five_prime_UTR | 30.0% | |
| TCTATCAAAATCTTCAGCAA+CGG | + | tig0019144:143674-143693 | None:intergenic | 30.0% | |
| CCAGGAAAACAAAGATAATA+AGG | + | tig0019144:143788-143807 | None:intergenic | 30.0% | |
| !!! | CCTTATTATCTTTGTTTTCC+TGG | - | tig0019144:143785-143804 | Msa1371050:five_prime_UTR | 30.0% |
| TTTCTTTCTCTTGTCTTGTC+TGG | - | tig0019144:138995-139014 | Msa1371050:three_prime_UTR | 35.0% | |
| ! | TTCCGAGGAATTCTTTTCTT+TGG | + | tig0019144:139075-139094 | None:intergenic | 35.0% |
| GAACTCAATTCAGATTTGAG+AGG | + | tig0019144:139098-139117 | None:intergenic | 35.0% | |
| CTCAAATCTGAATTGAGTTC+CGG | - | tig0019144:139098-139117 | Msa1371050:intron | 35.0% | |
| TGCAGATCGAGTTCATTAAT+AGG | - | tig0019144:139298-139317 | Msa1371050:intron | 35.0% | |
| ATGCAAATACCAACGAGTAA+TGG | - | tig0019144:139331-139350 | Msa1371050:intron | 35.0% | |
| TGCAAATACCAACGAGTAAT+GGG | - | tig0019144:139332-139351 | Msa1371050:intron | 35.0% | |
| CAGTGTCTGTCATTCAAAAT+TGG | - | tig0019144:139366-139385 | Msa1371050:intron | 35.0% | |
| ACGTGTTCTTAACATCTTGT+TGG | - | tig0019144:139465-139484 | Msa1371050:intron | 35.0% | |
| GTTCTTAACATCTTGTTGGT+TGG | - | tig0019144:139469-139488 | Msa1371050:intron | 35.0% | |
| ACATATAGACTAGAATAGGC+TGG | + | tig0019144:139519-139538 | None:intergenic | 35.0% | |
| !! | ATTGAATTTGCCATCGACTT+TGG | + | tig0019144:139542-139561 | None:intergenic | 35.0% |
| TATTGTTATGCTTCTTCTCC+AGG | - | tig0019144:139615-139634 | Msa1371050:intron | 35.0% | |
| !! | CTCTATTTCTACATTCATGC+AGG | - | tig0019144:139672-139691 | Msa1371050:intron | 35.0% |
| ATTTCTACATTCATGCAGGT+AGG | - | tig0019144:139676-139695 | Msa1371050:intron | 35.0% | |
| CTTGAATCTAGCTAGTGTTA+AGG | + | tig0019144:139743-139762 | None:intergenic | 35.0% | |
| ATTCATCCTTCATCTCTTGT+AGG | - | tig0019144:139772-139791 | Msa1371050:intron | 35.0% | |
| CAGAGATCTTTCTTTCCTTT+AGG | - | tig0019144:139921-139940 | Msa1371050:CDS | 35.0% | |
| ! | TGATGCATGATATGTTGACT+TGG | - | tig0019144:140070-140089 | Msa1371050:intron | 35.0% |
| GTTTCACTGACGTAACTTAT+GGG | - | tig0019144:140097-140116 | Msa1371050:intron | 35.0% | |
| ! | GTTTTCTTACAATGGTTCCT+TGG | - | tig0019144:140374-140393 | Msa1371050:CDS | 35.0% |
| GAATATTTCCAATTGTCCCA+AGG | + | tig0019144:140394-140413 | None:intergenic | 35.0% | |
| AACAGCCAACCATTAAAAAC+AGG | + | tig0019144:140444-140463 | None:intergenic | 35.0% | |
| TCCGTCATGTATATAGGATA+AGG | - | tig0019144:140555-140574 | Msa1371050:intron | 35.0% | |
| CCCTTATCCTATATACATGA+CGG | + | tig0019144:140559-140578 | None:intergenic | 35.0% | |
| CCGTCATGTATATAGGATAA+GGG | - | tig0019144:140556-140575 | Msa1371050:intron | 35.0% | |
| TGATACAAGCATATATCTGC+AGG | - | tig0019144:141009-141028 | Msa1371050:intron | 35.0% | |
| GAACTCGTTCAAACAATTTC+AGG | + | tig0019144:141095-141114 | None:intergenic | 35.0% | |
| GTAGTCTGTCCAACATTATA+AGG | + | tig0019144:141155-141174 | None:intergenic | 35.0% | |
| ! | TCTAGTTAGTTTCAGTTGTC+AGG | + | tig0019144:141404-141423 | None:intergenic | 35.0% |
| !!! | TTACTTCACTTTTGACTTCC+AGG | + | tig0019144:141443-141462 | None:intergenic | 35.0% |
| TTTCAAGAACTGCACTTTAG+TGG | - | tig0019144:141482-141501 | Msa1371050:intron | 35.0% | |
| ! | GGAGCTATGTTCAATTTTCT+CGG | - | tig0019144:141604-141623 | Msa1371050:CDS | 35.0% |
| !!! | GTTGTGACTGCTATTTTCAA+AGG | - | tig0019144:141631-141650 | Msa1371050:intron | 35.0% |
| ACAATAGAATGCCCAAAATC+AGG | - | tig0019144:141723-141742 | Msa1371050:intron | 35.0% | |
| !!! | GAATTTTTTCTCCCTTGTCT+TGG | - | tig0019144:141796-141815 | Msa1371050:CDS | 35.0% |
| GAAGTTAAAGATCCAAGACA+AGG | + | tig0019144:141811-141830 | None:intergenic | 35.0% | |
| !! | TTGATTTGTCTGTGTTGGTA+GGG | + | tig0019144:141868-141887 | None:intergenic | 35.0% |
| !! | ATTGATTTGTCTGTGTTGGT+AGG | + | tig0019144:141869-141888 | None:intergenic | 35.0% |
| !! | TGACATTGATTTGTCTGTGT+TGG | + | tig0019144:141873-141892 | None:intergenic | 35.0% |
| ! | ATCGATGTGTTTTCATAGCA+AGG | - | tig0019144:141896-141915 | Msa1371050:intron | 35.0% |
| TTCTATACACACAACTTCCA+AGG | - | tig0019144:141933-141952 | Msa1371050:intron | 35.0% | |
| TCTATACACACAACTTCCAA+GGG | - | tig0019144:141934-141953 | Msa1371050:intron | 35.0% | |
| AAAAGAAATGTATACACCGC+CGG | + | tig0019144:142053-142072 | None:intergenic | 35.0% | |
| AATGTGGATTCAAATGTTCC+AGG | - | tig0019144:142104-142123 | Msa1371050:intron | 35.0% | |
| GTTTGCAATCAATAACATGG+TGG | + | tig0019144:142168-142187 | None:intergenic | 35.0% | |
| ATGGCCATCTACAATATAGA+AGG | + | tig0019144:142298-142317 | None:intergenic | 35.0% | |
| GAGAGAAGAGGAAAATAACA+TGG | + | tig0019144:142317-142336 | None:intergenic | 35.0% | |
| GAATAGGTTATTGAGAGAAG+AGG | + | tig0019144:142329-142348 | None:intergenic | 35.0% | |
| AACAGTTGCCACAATCTTTA+CGG | - | tig0019144:142386-142405 | Msa1371050:intron | 35.0% | |
| ATAGCATCTGCAGTACTATT+TGG | - | tig0019144:142411-142430 | Msa1371050:CDS | 35.0% | |
| TCTTTCGAATTCCATTTACC+TGG | + | tig0019144:142494-142513 | None:intergenic | 35.0% | |
| TTGGGGAAAAAACAAACAAG+TGG | + | tig0019144:142546-142565 | None:intergenic | 35.0% | |
| !!! | TTGTTTGTTTTTTCCCCAAG+TGG | - | tig0019144:142547-142566 | Msa1371050:intron | 35.0% |
| !!! | TGTTTGTTTTTTCCCCAAGT+GGG | - | tig0019144:142548-142567 | Msa1371050:intron | 35.0% |
| ! | TCATCTCTGACTTTTGACAA+TGG | + | tig0019144:142641-142660 | None:intergenic | 35.0% |
| AAAGTCAGAGATGAACAGAA+TGG | - | tig0019144:142647-142666 | Msa1371050:intron | 35.0% | |
| AGTCAACATGTCATAAAGTC+GGG | + | tig0019144:142832-142851 | None:intergenic | 35.0% | |
| TTGTAGAGGAAGAAGGAAAA+GGG | + | tig0019144:142974-142993 | None:intergenic | 35.0% | |
| ATTGTAGAGGAAGAAGGAAA+AGG | + | tig0019144:142975-142994 | None:intergenic | 35.0% | |
| !! | TCGTTTTTAAATATGGCAGC+TGG | - | tig0019144:143029-143048 | Msa1371050:CDS | 35.0% |
| TTTCTTCTGCACTGAACAAA+AGG | + | tig0019144:143358-143377 | None:intergenic | 35.0% | |
| GCACACATATAAAAAACCAG+TGG | + | tig0019144:143449-143468 | None:intergenic | 35.0% | |
| ! | TTGGTGATATCTCATAGCTA+TGG | - | tig0019144:143501-143520 | Msa1371050:five_prime_UTR | 35.0% |
| ATAAAGGCAGGCATGAATTA+TGG | - | tig0019144:143616-143635 | Msa1371050:five_prime_UTR | 35.0% | |
| TAAAGGCAGGCATGAATTAT+GGG | - | tig0019144:143617-143636 | Msa1371050:five_prime_UTR | 35.0% | |
| !! | AATGGATTCGTATGAGCTTT+TGG | - | tig0019144:143702-143721 | Msa1371050:five_prime_UTR | 35.0% |
| ! | TGAGCTTTTGGATATCAATG+TGG | - | tig0019144:143714-143733 | Msa1371050:five_prime_UTR | 35.0% |
| !! | TATAGATAGAATGGGTTGTG+AGG | + | tig0019144:143819-143838 | None:intergenic | 35.0% |
| AAAGTGGAGTCAAACCAAAC+TGG | + | tig0019144:138718-138737 | None:intergenic | 40.0% | |
| TTTCATTTCTCGCACCTCAT+TGG | - | tig0019144:138749-138768 | Msa1371050:three_prime_UTR | 40.0% | |
| !! | TTTTGAGTGATGACACGTGA+TGG | + | tig0019144:138776-138795 | None:intergenic | 40.0% |
| ATTGACGGTTGTTTGTGATC+TGG | + | tig0019144:139133-139152 | None:intergenic | 40.0% | |
| CTAGGTAGGTTTCTCTTTGT+CGG | - | tig0019144:139171-139190 | Msa1371050:intron | 40.0% | |
| TCTATCATCCCATTACTCGT+TGG | + | tig0019144:139343-139362 | None:intergenic | 40.0% | |
| !!! | AGTTTTTGATGATGCAGCAG+CGG | + | tig0019144:139398-139417 | None:intergenic | 40.0% |
| ! | CTTAACATCTTGTTGGTTGG+TGG | - | tig0019144:139472-139491 | Msa1371050:intron | 40.0% |
| GTCTATATGTCCAAAGTCGA+TGG | - | tig0019144:139529-139548 | Msa1371050:CDS | 40.0% | |
| AGGCTAGGAATCAAAAGGTT+GGG | - | tig0019144:139635-139654 | Msa1371050:intron | 40.0% | |
| AGCATACAGAAATGCTGGAA+CGG | + | tig0019144:139822-139841 | None:intergenic | 40.0% | |
| CTATCTCAAGTTTGTCATGC+AGG | - | tig0019144:139850-139869 | Msa1371050:intron | 40.0% | |
| AGGGTGCATATGAAACCTAA+AGG | + | tig0019144:139939-139958 | None:intergenic | 40.0% | |
| !! | CATGATATGTTGACTTGGCT+GGG | - | tig0019144:140075-140094 | Msa1371050:intron | 40.0% |
| GGTTTCACTGACGTAACTTA+TGG | - | tig0019144:140096-140115 | Msa1371050:intron | 40.0% | |
| CTTAACATCTTCACAGTAGC+AGG | + | tig0019144:140156-140175 | None:intergenic | 40.0% | |
| AGCCAAATAATGCCTTGCTT+AGG | - | tig0019144:140234-140253 | Msa1371050:intron | 40.0% | |
| ! | TGCCTAAGCAAGGCATTATT+TGG | + | tig0019144:140239-140258 | None:intergenic | 40.0% |
| TCATATGCAATGCCTAAGCA+AGG | + | tig0019144:140249-140268 | None:intergenic | 40.0% | |
| ! | ATATAGCTTGTGACAGCTGA+TGG | - | tig0019144:140268-140287 | Msa1371050:intron | 40.0% |
| ! | AAGGGATTTAAGAGGTACAC+TGG | - | tig0019144:140574-140593 | Msa1371050:intron | 40.0% |
| TTTAGGTCTTCCTGTCACAA+TGG | - | tig0019144:140781-140800 | Msa1371050:intron | 40.0% | |
| TTAGGTCTTCCTGTCACAAT+GGG | - | tig0019144:140782-140801 | Msa1371050:intron | 40.0% | |
| TTATAAACAGAGGCCATCGA+TGG | + | tig0019144:140965-140984 | None:intergenic | 40.0% | |
| TTTCAGAGACATAGTGACCA+AGG | + | tig0019144:141320-141339 | None:intergenic | 40.0% | |
| !! | TTAAAAGTGTCCTAGCAGTC+TGG | + | tig0019144:141510-141529 | None:intergenic | 40.0% |
| AACTCATGTGGTTGAGGTAA+GGG | + | tig0019144:141840-141859 | None:intergenic | 40.0% | |
| TAACTCATGTGGTTGAGGTA+AGG | + | tig0019144:141841-141860 | None:intergenic | 40.0% | |
| ! | TGATTTGTCTGTGTTGGTAG+GGG | + | tig0019144:141867-141886 | None:intergenic | 40.0% |
| TCAAGGATATCAAAGCTGCT+GGG | + | tig0019144:142131-142150 | None:intergenic | 40.0% | |
| TTCAAGGATATCAAAGCTGC+TGG | + | tig0019144:142132-142151 | None:intergenic | 40.0% | |
| ! | AGCAGCTTTGATATCCTTGA+AGG | - | tig0019144:142131-142150 | Msa1371050:intron | 40.0% |
| ATTGCAAACAATGCTGCACA+AGG | - | tig0019144:142179-142198 | Msa1371050:intron | 40.0% | |
| TTGCAAACAATGCTGCACAA+GGG | - | tig0019144:142180-142199 | Msa1371050:intron | 40.0% | |
| CAATATAGAAGGCAATGCGA+TGG | + | tig0019144:142287-142306 | None:intergenic | 40.0% | |
| ACAGTTGCCACAATCTTTAC+GGG | - | tig0019144:142387-142406 | Msa1371050:intron | 40.0% | |
| ATCTCAATGCACCAGGTAAA+TGG | - | tig0019144:142480-142499 | Msa1371050:intron | 40.0% | |
| !!! | GTTTGTTTTTTCCCCAAGTG+GGG | - | tig0019144:142549-142568 | Msa1371050:intron | 40.0% |
| ATGATGTTCAGGAGAAGCAA+AGG | - | tig0019144:142684-142703 | Msa1371050:intron | 40.0% | |
| !! | TACAGTAGGTTGATCTAGGT+GGG | + | tig0019144:143206-143225 | None:intergenic | 40.0% |
| !! | TTACAGTAGGTTGATCTAGG+TGG | + | tig0019144:143207-143226 | None:intergenic | 40.0% |
| ! | AAGTTGCTTTGACGAAATCC+TGG | - | tig0019144:143255-143274 | Msa1371050:exon | 40.0% |
| CTGAACAAAAGGAACTGCTT+AGG | + | tig0019144:143347-143366 | None:intergenic | 40.0% | |
| ACCCATTGTATACCTTGAGT+AGG | - | tig0019144:143423-143442 | Msa1371050:five_prime_UTR | 40.0% | |
| GCCTACTCAAGGTATACAAT+GGG | + | tig0019144:143427-143446 | None:intergenic | 40.0% | |
| GGTTGTGAGGTAAATATACC+AGG | + | tig0019144:143806-143825 | None:intergenic | 40.0% | |
| TTCAGATTTGAGAGGTTCCG+AGG | + | tig0019144:139090-139109 | None:intergenic | 45.0% | |
| GAGATGTGAGAGAGAGATCT+TGG | + | tig0019144:139203-139222 | None:intergenic | 45.0% | |
| !!! | GTTTTTGATGATGCAGCAGC+GGG | + | tig0019144:139397-139416 | None:intergenic | 45.0% |
| GGTGGTGATTGTATGCTTGT+TGG | - | tig0019144:139490-139509 | Msa1371050:intron | 45.0% | |
| TTATGCTTCTTCTCCAGGCT+AGG | - | tig0019144:139620-139639 | Msa1371050:intron | 45.0% | |
| TCTCCAGGCTAGGAATCAAA+AGG | - | tig0019144:139630-139649 | Msa1371050:intron | 45.0% | |
| !! | CAACCTTTTGATTCCTAGCC+TGG | + | tig0019144:139636-139655 | None:intergenic | 45.0% |
| CAGGCTAGGAATCAAAAGGT+TGG | - | tig0019144:139634-139653 | Msa1371050:intron | 45.0% | |
| GGCTAGGAATCAAAAGGTTG+GGG | - | tig0019144:139636-139655 | Msa1371050:intron | 45.0% | |
| !! | GCATGATATGTTGACTTGGC+TGG | - | tig0019144:140074-140093 | Msa1371050:intron | 45.0% |
| CAATGGTTCCTTGGGACAAT+TGG | - | tig0019144:140383-140402 | Msa1371050:CDS | 45.0% | |
| !!! | GCGCCGTTTTTCTATCATTC+AGG | - | tig0019144:140519-140538 | Msa1371050:intron | 45.0% |
| ! | AGAGGTACACTGGCCATATT+TGG | - | tig0019144:140584-140603 | Msa1371050:intron | 45.0% |
| CGGTAGTACAGAGCCAAATA+TGG | + | tig0019144:140600-140619 | None:intergenic | 45.0% | |
| ACCTAAAGCTGTAGTTCCCT+CGG | + | tig0019144:140768-140787 | None:intergenic | 45.0% | |
| AGATATGCACCCATTGTGAC+AGG | + | tig0019144:140794-140813 | None:intergenic | 45.0% | |
| !! | AAGAGAGTGTCTCCAGACAT+GGG | + | tig0019144:141259-141278 | None:intergenic | 45.0% |
| !! | TAAGAGAGTGTCTCCAGACA+TGG | + | tig0019144:141260-141279 | None:intergenic | 45.0% |
| ! | ATTTGTCTGTGTTGGTAGGG+GGG | + | tig0019144:141865-141884 | None:intergenic | 45.0% |
| ! | GATTTGTCTGTGTTGGTAGG+GGG | + | tig0019144:141866-141885 | None:intergenic | 45.0% |
| !! | CCACGCTTTTCACTTTTCAC+CGG | - | tig0019144:142031-142050 | Msa1371050:intron | 45.0% |
| TGCTATGCCCGTAAAGATTG+TGG | + | tig0019144:142397-142416 | None:intergenic | 45.0% | |
| CGTATTCATCTCAATGCACC+AGG | - | tig0019144:142473-142492 | Msa1371050:intron | 45.0% | |
| AGATGAACAGAATGGTGCAC+TGG | - | tig0019144:142655-142674 | Msa1371050:intron | 45.0% | |
| ACTGGAACTGCATGATGTTC+AGG | - | tig0019144:142673-142692 | Msa1371050:intron | 45.0% | |
| TTTGGGCCCCCAGAAAATTA+TGG | - | tig0019144:142790-142809 | Msa1371050:intron | 45.0% | |
| CTAACCACATGATCGATGTG+AGG | - | tig0019144:142850-142869 | Msa1371050:intron | 45.0% | |
| TACTCCTCACATCGATCATG+TGG | + | tig0019144:142857-142876 | None:intergenic | 45.0% | |
| !! | ACAGTAGGTTGATCTAGGTG+GGG | + | tig0019144:143205-143224 | None:intergenic | 45.0% |
| GGCCTACTCAAGGTATACAA+TGG | + | tig0019144:143428-143447 | None:intergenic | 45.0% | |
| AAAAACCAGTGGCCTACTCA+AGG | + | tig0019144:143438-143457 | None:intergenic | 45.0% | |
| ! | TCTTCAGCAACGGAAAGCAT+TGG | + | tig0019144:143664-143683 | None:intergenic | 45.0% |
| !!! | TTTTTTATTAATTTTCATTA+TGG | - | tig0019144:139271-139290 | Msa1371050:intron | 5.0% |
| !! | TATTAAAATATTTAATAATG+TGG | - | tig0019144:142088-142107 | Msa1371050:CDS | 5.0% |
| !! | TGACACGTGATGGACCAATG+AGG | + | tig0019144:138766-138785 | None:intergenic | 50.0% |
| ACAACCGTCAATGCTCCAGT+TGG | - | tig0019144:139141-139160 | Msa1371050:intron | 50.0% | |
| !! | GAGTCCAACTGGAGCATTGA+CGG | + | tig0019144:139148-139167 | None:intergenic | 50.0% |
| CTACCTAGATCGAGTCCAAC+TGG | + | tig0019144:139159-139178 | None:intergenic | 50.0% | |
| CAGTTGGACTCGATCTAGGT+AGG | - | tig0019144:139157-139176 | Msa1371050:intron | 50.0% | |
| GAGCTGCCTACAAGAGATGA+AGG | + | tig0019144:139781-139800 | None:intergenic | 50.0% | |
| ! | CTGTTGACTGTGCTTGTTGC+AGG | - | tig0019144:140459-140478 | Msa1371050:intron | 50.0% |
| GCTCTTGCTCTCTTGCTCAT+TGG | - | tig0019144:140713-140732 | Msa1371050:intron | 50.0% | |
| TCAGCTACGATCTTTACCCG+AGG | - | tig0019144:140748-140767 | Msa1371050:intron | 50.0% | |
| CAGCTACGATCTTTACCCGA+GGG | - | tig0019144:140749-140768 | Msa1371050:intron | 50.0% | |
| CCTAAAGCTGTAGTTCCCTC+GGG | + | tig0019144:140767-140786 | None:intergenic | 50.0% | |
| ! | TTTAGTGGTGCCAGACTGCT+AGG | - | tig0019144:141497-141516 | Msa1371050:intron | 50.0% |
| ! | TTTGTCTGTGTTGGTAGGGG+GGG | + | tig0019144:141864-141883 | None:intergenic | 50.0% |
| CCGGTGAAAAGTGAAAAGCG+TGG | + | tig0019144:142034-142053 | None:intergenic | 50.0% | |
| !! | CGCTTTTCACTTTTCACCGG+CGG | - | tig0019144:142034-142053 | Msa1371050:intron | 50.0% |
| ATATCAAAGCTGCTGGGACC+TGG | + | tig0019144:142125-142144 | None:intergenic | 50.0% | |
| !!! | TGTTTTTTCCCCAAGTGGGG+TGG | - | tig0019144:142552-142571 | Msa1371050:intron | 50.0% |
| !!! | GTTTTTTCCCCAAGTGGGGT+GGG | - | tig0019144:142553-142572 | Msa1371050:intron | 50.0% |
| !!! | TTTTTTCCCCAAGTGGGGTG+GGG | - | tig0019144:142554-142573 | Msa1371050:intron | 50.0% |
| TTGATCTAGGTGGGGAGAAG+TGG | + | tig0019144:143197-143216 | None:intergenic | 50.0% | |
| GTATACCTTGAGTAGGCCAC+TGG | - | tig0019144:143430-143449 | Msa1371050:five_prime_UTR | 50.0% | |
| !! | TCTGCGGAAGTATCCCAGAA+AGG | + | tig0019144:143574-143593 | None:intergenic | 50.0% |
| ! | GAATTATGGGCATCGTGAGC+TGG | - | tig0019144:143630-143649 | Msa1371050:five_prime_UTR | 50.0% |
| ! | TGTGATCTGGAACGAGCTGC+CGG | + | tig0019144:139120-139139 | None:intergenic | 55.0% |
| GCTCCAGTTGGACTCGATCT+AGG | - | tig0019144:139153-139172 | Msa1371050:intron | 55.0% | |
| GAAATGCTGGAACGGCGAGA+AGG | + | tig0019144:139814-139833 | None:intergenic | 55.0% | |
| CCCGAGGGAACTACAGCTTT+AGG | - | tig0019144:140764-140783 | Msa1371050:intron | 55.0% | |
| GCAGGTCACTGTTCCATCGA+TGG | - | tig0019144:140949-140968 | Msa1371050:CDS | 55.0% | |
| GGGGGTAACTCATGTGGTTG+AGG | + | tig0019144:141846-141865 | None:intergenic | 55.0% | |
| ! | TTTTTCCCCAAGTGGGGTGG+GGG | - | tig0019144:142555-142574 | Msa1371050:intron | 55.0% |
| GGCAGCTGGAGCAAATGAAG+AGG | - | tig0019144:143043-143062 | Msa1371050:CDS | 55.0% | |
| TTTCCAGGCCAGTCATCGAG+TGG | - | tig0019144:143154-143173 | Msa1371050:CDS | 55.0% | |
| TTCCAGGCCAGTCATCGAGT+GGG | - | tig0019144:143155-143174 | Msa1371050:CDS | 55.0% | |
| ATCGTGTCCCACTCGATGAC+TGG | + | tig0019144:143165-143184 | None:intergenic | 55.0% | |
| GCATGCACGTGGGCACAAAC+TGG | + | tig0019144:141237-141256 | None:intergenic | 60.0% | |
| CCAGACATGGGCATGCACGT+GGG | + | tig0019144:141247-141266 | None:intergenic | 60.0% | |
| TCCAGACATGGGCATGCACG+TGG | + | tig0019144:141248-141267 | None:intergenic | 60.0% | |
| GGTAGGGGGGGTAACTCATG+TGG | + | tig0019144:141852-141871 | None:intergenic | 60.0% | |
| ! | TTTTCCCCAAGTGGGGTGGG+GGG | - | tig0019144:142556-142575 | Msa1371050:intron | 60.0% |
| CCCACGTGCATGCCCATGTC+TGG | - | tig0019144:141244-141263 | Msa1371050:intron | 65.0% | |
| TTTCCCCAAGTGGGGTGGGG+GGG | - | tig0019144:142557-142576 | Msa1371050:intron | 65.0% | |
| ! | GTCCCACTCGATGACTGGCC+TGG | + | tig0019144:143160-143179 | None:intergenic | 65.0% |
| TGTCCCCCCCACCCCACTTG+GGG | + | tig0019144:142563-142582 | None:intergenic | 70.0% | |
| CTGTCCCCCCCACCCCACTT+GGG | + | tig0019144:142564-142583 | None:intergenic | 70.0% | |
| ACTGTCCCCCCCACCCCACT+TGG | + | tig0019144:142565-142584 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019144 | gene | 138660 | 143933 | 138660 | ID=Msa1371050;Name=Msa1371050 |
| tig0019144 | mRNA | 138660 | 143933 | 138660 | ID=Msa1371050-mRNA-1;Parent=Msa1371050;Name=Msa1371050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=543|1|1|1|0.84|0.71|14|464|410 |
| tig0019144 | exon | 138660 | 139112 | 138660 | ID=Msa1371050-mRNA-1:exon:2010;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 139371 | 139432 | 139371 | ID=Msa1371050-mRNA-1:exon:2009;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 139529 | 139574 | 139529 | ID=Msa1371050-mRNA-1:exon:2008;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 139888 | 139964 | 139888 | ID=Msa1371050-mRNA-1:exon:2007;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 140099 | 140232 | 140099 | ID=Msa1371050-mRNA-1:exon:2006;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 140360 | 140467 | 140360 | ID=Msa1371050-mRNA-1:exon:2005;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 140941 | 141010 | 140941 | ID=Msa1371050-mRNA-1:exon:2004;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 141563 | 141640 | 141563 | ID=Msa1371050-mRNA-1:exon:2003;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 141764 | 141886 | 141764 | ID=Msa1371050-mRNA-1:exon:2002;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 142053 | 142112 | 142053 | ID=Msa1371050-mRNA-1:exon:2001;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 142408 | 142452 | 142408 | ID=Msa1371050-mRNA-1:exon:2000;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 142722 | 142799 | 142722 | ID=Msa1371050-mRNA-1:exon:1999;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 142900 | 143290 | 142900 | ID=Msa1371050-mRNA-1:exon:1998;Parent=Msa1371050-mRNA-1 |
| tig0019144 | exon | 143419 | 143933 | 143419 | ID=Msa1371050-mRNA-1:exon:1997;Parent=Msa1371050-mRNA-1 |
| tig0019144 | five_prime_UTR | 143419 | 143933 | 143419 | ID=Msa1371050-mRNA-1:five_prime_utr;Parent=Msa1371050-mRNA-1 |
| tig0019144 | five_prime_UTR | 143263 | 143290 | 143263 | ID=Msa1371050-mRNA-1:five_prime_utr;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 142900 | 143262 | 142900 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 142722 | 142799 | 142722 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 142408 | 142452 | 142408 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 142053 | 142112 | 142053 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 141764 | 141886 | 141764 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 141563 | 141640 | 141563 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 140941 | 141010 | 140941 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 140360 | 140467 | 140360 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 140099 | 140232 | 140099 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 139888 | 139964 | 139888 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 139529 | 139574 | 139529 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | CDS | 139382 | 139432 | 139382 | ID=Msa1371050-mRNA-1:cds;Parent=Msa1371050-mRNA-1 |
| tig0019144 | three_prime_UTR | 139371 | 139381 | 139371 | ID=Msa1371050-mRNA-1:three_prime_utr;Parent=Msa1371050-mRNA-1 |
| tig0019144 | three_prime_UTR | 138660 | 139112 | 138660 | ID=Msa1371050-mRNA-1:three_prime_utr;Parent=Msa1371050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
