Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371110 | XP_003592786.2 | 97.945 | 438 | 9 | 0 | 1 | 438 | 1 | 438 | 0.0 | 881 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371110 | sp|Q9SR06|CLP1_ARATH | 69.977 | 443 | 128 | 3 | 1 | 438 | 1 | 443 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371110 | G7IF21 | 97.945 | 438 | 9 | 0 | 1 | 438 | 1 | 438 | 0.0 | 881 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0793180 | Msa1371110 | 0.845124 | 4.939757e-59 | -8.615850e-47 |
| Msa0437880 | Msa1371110 | 0.810400 | 1.174578e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371110 | MtrunA17_Chr1g0213211 | 97.945 | 438 | 9 | 0 | 1 | 438 | 1 | 438 | 0.0 | 881 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371110 | AT3G04680.1 | 69.977 | 443 | 128 | 3 | 1 | 438 | 1 | 443 | 0.0 | 649 |
| Msa1371110 | AT3G04680.3 | 69.977 | 443 | 128 | 3 | 1 | 438 | 1 | 443 | 0.0 | 649 |
| Msa1371110 | AT3G04680.2 | 69.977 | 443 | 128 | 3 | 1 | 438 | 1 | 443 | 0.0 | 649 |
| Msa1371110 | AT5G39930.1 | 53.444 | 421 | 191 | 3 | 17 | 435 | 4 | 421 | 4.12e-157 | 451 |
| Msa1371110 | AT5G11010.1 | 29.851 | 134 | 90 | 4 | 130 | 259 | 33 | 166 | 1.19e-12 | 68.9 |
| Msa1371110 | AT5G11010.4 | 29.851 | 134 | 90 | 4 | 130 | 259 | 33 | 166 | 1.52e-12 | 69.3 |
| Msa1371110 | AT5G11010.2 | 29.851 | 134 | 90 | 4 | 130 | 259 | 33 | 166 | 1.52e-12 | 69.3 |
| Msa1371110 | AT5G11010.3 | 29.851 | 134 | 90 | 4 | 130 | 259 | 33 | 166 | 1.52e-12 | 69.3 |
Find 161 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAGCAAGTATTTAATTA+TGG | 0.144919 | tig0019145:+15766 | Msa1371110:CDS |
| CTTCGTCTTCGACTCCTTAA+TGG | 0.169227 | tig0019145:+12383 | Msa1371110:CDS |
| ATAATAATTATATTATAATT+TGG | 0.177480 | tig0019145:-15983 | None:intergenic |
| TACCCTTATCCTATTACTTC+TGG | 0.205288 | tig0019145:-14135 | None:intergenic |
| GACAATTAAGCAAGTGAAAT+TGG | 0.240765 | tig0019145:+12319 | Msa1371110:CDS |
| GTTGTTGGACCTTCAGATTC+TGG | 0.241641 | tig0019145:+13152 | Msa1371110:CDS |
| TCCTATTACTTCTGGACTTC+TGG | 0.246775 | tig0019145:-14127 | None:intergenic |
| GGAAAATTGAGCCAGATTTC+AGG | 0.267757 | tig0019145:-12437 | None:intergenic |
| ACCTTTGTTGACTTGGATAT+TGG | 0.269551 | tig0019145:+13233 | Msa1371110:CDS |
| GGTGCAGGTCCCGCTGTTAC+TGG | 0.269582 | tig0019145:+12281 | Msa1371110:CDS |
| AAATCTCAGCGTTTCCATTA+AGG | 0.272061 | tig0019145:-12397 | None:intergenic |
| GGTGGAGCTGCCGTGGTATT+TGG | 0.277365 | tig0019145:-12133 | None:intergenic |
| CCACGCTCTGCCTTGCCAAT+TGG | 0.286604 | tig0019145:+14924 | Msa1371110:CDS |
| CCAAGCAAGTATTTAATTAT+GGG | 0.286724 | tig0019145:+15767 | Msa1371110:CDS |
| ATTCAAGGCTGATGTTGTTT+TGG | 0.292392 | tig0019145:+13832 | Msa1371110:CDS |
| ACCCAAACCCTAGTCTTTAA+TGG | 0.292695 | tig0019145:+12250 | Msa1371110:exon |
| TCCGCGGTATAACCAGTTTC+AGG | 0.300467 | tig0019145:-12608 | None:intergenic |
| AAAATTGAATTGAATTGAAT+TGG | 0.307309 | tig0019145:+12057 | Msa1371110:five_prime_UTR |
| GTTTGTGAGGCGGCGGAGAT+AGG | 0.343346 | tig0019145:-12229 | None:intergenic |
| CAAGGAGCTCGCGGGGATAC+TGG | 0.343687 | tig0019145:+13554 | Msa1371110:CDS |
| CGCCATTAAAGACTAGGGTT+TGG | 0.347434 | tig0019145:-12252 | None:intergenic |
| GCCATTAAAGACTAGGGTTT+GGG | 0.348947 | tig0019145:-12251 | None:intergenic |
| GTCAAGGATGCTTCTTAGTT+GGG | 0.351155 | tig0019145:+13187 | Msa1371110:CDS |
| TTATGGTGCAGCAATGTTGC+CGG | 0.356449 | tig0019145:+15585 | Msa1371110:intron |
| GGCCCTAGGGTGATTGTTGT+TGG | 0.362138 | tig0019145:+13137 | Msa1371110:CDS |
| GGATCGATGGGCATTTCAAT+TGG | 0.380336 | tig0019145:-13296 | None:intergenic |
| TGTCAAGGATGCTTCTTAGT+TGG | 0.381883 | tig0019145:+13186 | Msa1371110:CDS |
| AAGTAAGTAATAATAGATAA+GGG | 0.383752 | tig0019145:-12197 | None:intergenic |
| CCGAGCTTCCACCTGAAATC+TGG | 0.383905 | tig0019145:+12426 | Msa1371110:CDS |
| AGATGTGAAGTGAAGTCTTT+TGG | 0.394122 | tig0019145:-12103 | None:intergenic |
| AGTTACGGCGAACTTGAGTC+TGG | 0.395870 | tig0019145:-12462 | None:intergenic |
| AATTTCACTTGCTTAATTGT+CGG | 0.397547 | tig0019145:-12317 | None:intergenic |
| TTTGCTCAGAGACGTGCTTA+AGG | 0.408263 | tig0019145:+14034 | Msa1371110:CDS |
| AGTCCAGAAGTAATAGGATA+AGG | 0.412890 | tig0019145:+14132 | Msa1371110:CDS |
| CAAGGGTCTATAACAATTCC+TGG | 0.414153 | tig0019145:+13257 | Msa1371110:CDS |
| TCAAGTTTCAAGCCATGTTA+AGG | 0.417129 | tig0019145:-15792 | None:intergenic |
| CATTGATCAAGACTTGAGAT+TGG | 0.426789 | tig0019145:-15876 | None:intergenic |
| TACCTTGAAATGATCTCATC+AGG | 0.434012 | tig0019145:-15041 | None:intergenic |
| TTGCTCAGAGACGTGCTTAA+GGG | 0.434050 | tig0019145:+14035 | Msa1371110:CDS |
| ATTTGATTGGTCAGGGCCCT+AGG | 0.434217 | tig0019145:+13123 | Msa1371110:intron |
| AAAGTAAGTAATAATAGATA+AGG | 0.436695 | tig0019145:-12198 | None:intergenic |
| TAACACCATTCCAGCAGCTC+TGG | 0.437054 | tig0019145:-13604 | None:intergenic |
| GCCAGAAGTCCAGAAGTAAT+AGG | 0.441249 | tig0019145:+14126 | Msa1371110:CDS |
| AGTAAGTAATAATAGATAAG+GGG | 0.441912 | tig0019145:-12196 | None:intergenic |
| TTTGTTTATCGAGTTGGTGG+TGG | 0.447219 | tig0019145:+14891 | Msa1371110:CDS |
| GTCCAGAAGTAATAGGATAA+GGG | 0.451342 | tig0019145:+14133 | Msa1371110:CDS |
| CCCATAATTAAATACTTGCT+TGG | 0.452098 | tig0019145:-15767 | None:intergenic |
| GACTTATTTGTTTATCGAGT+TGG | 0.455222 | tig0019145:+14885 | Msa1371110:CDS |
| AATGATCTCATCAGGTTCCT+TGG | 0.459020 | tig0019145:-15033 | None:intergenic |
| AGTTTCACAACATCTACTTT+AGG | 0.461880 | tig0019145:-14062 | None:intergenic |
| GCATGCAATCCGTACATTCA+AGG | 0.462451 | tig0019145:+13817 | Msa1371110:CDS |
| GACTTCTGGCGGAACTTCAC+AGG | 0.465905 | tig0019145:-14113 | None:intergenic |
| GCAGCAGGTTCTGCTCCAAT+TGG | 0.466934 | tig0019145:-14939 | None:intergenic |
| AATGCCGAGTCCAGAGCTGC+TGG | 0.468900 | tig0019145:+13594 | Msa1371110:CDS |
| CAACATCAGCCTTGAATGTA+CGG | 0.471086 | tig0019145:-13826 | None:intergenic |
| GTATGGTGCTACCATTGAAA+TGG | 0.476019 | tig0019145:+12577 | Msa1371110:CDS |
| AATACCATGGGATGGATAGA+AGG | 0.476207 | tig0019145:+13627 | Msa1371110:CDS |
| GAAGCCCACCTTTGTTGACT+TGG | 0.477215 | tig0019145:+13226 | Msa1371110:CDS |
| ATGGATGGTACTCCTGAAAC+TGG | 0.480202 | tig0019145:+12596 | Msa1371110:CDS |
| AGGAGTACCATCCATTTCAA+TGG | 0.480948 | tig0019145:-12588 | None:intergenic |
| GTTGACTTGGATATTGGCCA+AGG | 0.482675 | tig0019145:+13239 | Msa1371110:CDS |
| GGTCGGGTGGAGTTGTATCT+AGG | 0.483284 | tig0019145:+14090 | Msa1371110:CDS |
| CAGGAATTGTTATAGACCCT+TGG | 0.485244 | tig0019145:-13256 | None:intergenic |
| AGATGACTCTGTATTATCTC+AGG | 0.490721 | tig0019145:+12808 | Msa1371110:CDS |
| TTTGTGAGGCGGCGGAGATA+GGG | 0.492876 | tig0019145:-12228 | None:intergenic |
| GTAATAGACAGTCATTCTCT+TGG | 0.494768 | tig0019145:+15831 | Msa1371110:three_prime_UTR |
| GAGGAGAAAGATCATTTGTA+AGG | 0.495205 | tig0019145:-14839 | None:intergenic |
| ACATACCTTACACCATCTGC+TGG | 0.496857 | tig0019145:+15737 | Msa1371110:CDS |
| TTAATGGCGTATGGCGGTGC+AGG | 0.497042 | tig0019145:+12266 | Msa1371110:exon |
| ATACTGGAGAGACAATTTGC+TGG | 0.500426 | tig0019145:+13570 | Msa1371110:CDS |
| TAGGGTTTGGGTTTGTGAGG+CGG | 0.500563 | tig0019145:-12239 | None:intergenic |
| CTTGGAAGTTCTCCAGCAGA+TGG | 0.504121 | tig0019145:-15749 | None:intergenic |
| AATTGAAATGCCCATCGATC+CGG | 0.504848 | tig0019145:+13298 | Msa1371110:CDS |
| GTTCTCCAGCAGATGGTGTA+AGG | 0.505096 | tig0019145:-15742 | None:intergenic |
| AGGGCTTCGCGGAAGTGCGA+CGG | 0.506037 | tig0019145:-12164 | None:intergenic |
| TAACAGACATTGACATTCAG+AGG | 0.512887 | tig0019145:+15619 | Msa1371110:CDS |
| GTTGGGCAGCAAAACAAGGT+TGG | 0.516790 | tig0019145:+13204 | Msa1371110:CDS |
| AAGGCAGAGCGTGGAGCTTG+TGG | 0.519634 | tig0019145:-14915 | None:intergenic |
| CCCTAGTCTTTAATGGCGTA+TGG | 0.520280 | tig0019145:+12257 | Msa1371110:exon |
| AATTCCCTCCACCGGATCGA+TGG | 0.521049 | tig0019145:-13309 | None:intergenic |
| GGGCTTCGCGGAAGTGCGAC+GGG | 0.521592 | tig0019145:-12163 | None:intergenic |
| CTTAGTTGGGCAGCAAAACA+AGG | 0.522514 | tig0019145:+13200 | Msa1371110:CDS |
| GTTGTGAAACTTCAGAGGTC+GGG | 0.523003 | tig0019145:+14074 | Msa1371110:CDS |
| GACTAGGGTTTGGGTTTGTG+AGG | 0.527820 | tig0019145:-12242 | None:intergenic |
| TTGTTTATCGAGTTGGTGGT+GGG | 0.535155 | tig0019145:+14892 | Msa1371110:CDS |
| GGGAGAATGATAGGGCTTCG+CGG | 0.541609 | tig0019145:-12175 | None:intergenic |
| AAATTTGAAATATTAGAATG+AGG | 0.541936 | tig0019145:-14858 | None:intergenic |
| AACTGGTTATACCGCGGATG+AGG | 0.542046 | tig0019145:+12613 | Msa1371110:CDS |
| TCAAGAGGAATTCCCTCCAC+CGG | 0.542450 | tig0019145:-13317 | None:intergenic |
| TTATTTGTTTATCGAGTTGG+TGG | 0.548071 | tig0019145:+14888 | Msa1371110:CDS |
| GTAAGTAATAATAGATAAGG+GGG | 0.549372 | tig0019145:-12195 | None:intergenic |
| ACATTTACATAACTAACCAT+TGG | 0.551977 | tig0019145:-12737 | None:intergenic |
| ATTCCCTCCACCGGATCGAT+GGG | 0.554654 | tig0019145:-13308 | None:intergenic |
| GTCTGTTACATAGATAAAGC+CGG | 0.555833 | tig0019145:-15604 | None:intergenic |
| TTGACTTGGATATTGGCCAA+GGG | 0.556103 | tig0019145:+13240 | Msa1371110:CDS |
| CCAATTGGCAAGGCAGAGCG+TGG | 0.557049 | tig0019145:-14924 | None:intergenic |
| GTGCTTGTCAAGGAGCTCGC+GGG | 0.558666 | tig0019145:+13546 | Msa1371110:CDS |
| ACTCTCGTTGGATCTGCAGC+AGG | 0.559383 | tig0019145:-14954 | None:intergenic |
| CGAGTCCAGAGCTGCTGGAA+TGG | 0.560247 | tig0019145:+13599 | Msa1371110:CDS |
| AATGCCCATCGATCCGGTGG+AGG | 0.563074 | tig0019145:+13304 | Msa1371110:CDS |
| CCTTGCTGTCTCATTTGCCA+AGG | 0.564042 | tig0019145:+15016 | Msa1371110:CDS |
| TTCACAGCTACAACTCTCGT+TGG | 0.566936 | tig0019145:-14966 | None:intergenic |
| GCCATACGCCATTAAAGACT+AGG | 0.567735 | tig0019145:-12258 | None:intergenic |
| CCATACGCCATTAAAGACTA+GGG | 0.568872 | tig0019145:-12257 | None:intergenic |
| CACTCCTTCTATCCATCCCA+TGG | 0.569058 | tig0019145:-13631 | None:intergenic |
| GGAGTGGCAGCAATGCATCC+AGG | 0.569729 | tig0019145:-13275 | None:intergenic |
| TTTGATTGGTCAGGGCCCTA+GGG | 0.570927 | tig0019145:+13124 | Msa1371110:intron |
| CCAGATTTCAGGTGGAAGCT+CGG | 0.573098 | tig0019145:-12426 | None:intergenic |
| TGTCCATAAAAGTAAACAAG+AGG | 0.573566 | tig0019145:-13344 | None:intergenic |
| TGTTGTGAAACTTCAGAGGT+CGG | 0.573910 | tig0019145:+14073 | Msa1371110:CDS |
| AACCTGATGAGATCATTTCA+AGG | 0.575187 | tig0019145:+15039 | Msa1371110:CDS |
| TAATTATGGGAACCTTAACA+TGG | 0.575215 | tig0019145:+15780 | Msa1371110:CDS |
| TCGAAGACGAAGAGGTGAGT+CGG | 0.575469 | tig0019145:-12372 | None:intergenic |
| GGTCCAACAACAATCACCCT+AGG | 0.575548 | tig0019145:-13140 | None:intergenic |
| ATGCCCATCGATCCGGTGGA+GGG | 0.575608 | tig0019145:+13305 | Msa1371110:CDS |
| TTGATCAATGTAAATACTAA+CGG | 0.575996 | tig0019145:+15889 | Msa1371110:three_prime_UTR |
| GAGGCGGCGGAGATAGGGAA+TGG | 0.577986 | tig0019145:-12223 | None:intergenic |
| CCACGACGGTGGAGCTGCCG+TGG | 0.585467 | tig0019145:-12140 | None:intergenic |
| AGTGCGACGGGCCACGACGG+TGG | 0.586841 | tig0019145:-12151 | None:intergenic |
| GCCAATATCCAAGTCAACAA+AGG | 0.588558 | tig0019145:-13234 | None:intergenic |
| TGGTGTTAAATACCATGGGA+TGG | 0.592447 | tig0019145:+13619 | Msa1371110:CDS |
| AATATCCAAGTCAACAAAGG+TGG | 0.592672 | tig0019145:-13231 | None:intergenic |
| TGAAATGCCCATCGATCCGG+TGG | 0.592811 | tig0019145:+13301 | Msa1371110:CDS |
| AGAAAGGTCAGCATTCCACT+AGG | 0.597108 | tig0019145:-15944 | None:intergenic |
| GGTTTGGGTTTGTGAGGCGG+CGG | 0.601948 | tig0019145:-12236 | None:intergenic |
| GAATTTGAACCAGTAACAGC+GGG | 0.608811 | tig0019145:-12290 | None:intergenic |
| CTGGAAAGACTACCTTGTCA+AGG | 0.612870 | tig0019145:+13171 | Msa1371110:CDS |
| GGAAGTGCGACGGGCCACGA+CGG | 0.613029 | tig0019145:-12154 | None:intergenic |
| ATATCCAAGTCAACAAAGGT+GGG | 0.613831 | tig0019145:-13230 | None:intergenic |
| GTAGTCTTTCCAGAATCTGA+AGG | 0.614463 | tig0019145:-13161 | None:intergenic |
| AAATTGAGCCAGATTTCAGG+TGG | 0.615483 | tig0019145:-12434 | None:intergenic |
| ATTGTATAAAGTGCTTGTCA+AGG | 0.615803 | tig0019145:+13536 | Msa1371110:CDS |
| GATAATACAGAGTCATCTGA+AGG | 0.618694 | tig0019145:-12803 | None:intergenic |
| GATGGGCATTTCAATTGGAG+TGG | 0.619367 | tig0019145:-13291 | None:intergenic |
| TAAACAAGAGGCATTTCAAG+AGG | 0.619620 | tig0019145:-13332 | None:intergenic |
| CATTCCAGCAGCTCTGGACT+CGG | 0.622880 | tig0019145:-13598 | None:intergenic |
| AGGTTCTGCTCCAATTGGCA+AGG | 0.623138 | tig0019145:-14934 | None:intergenic |
| GTTACGGCGAACTTGAGTCT+GGG | 0.624730 | tig0019145:-12461 | None:intergenic |
| TGCTTGTCAAGGAGCTCGCG+GGG | 0.630947 | tig0019145:+13547 | Msa1371110:CDS |
| TATTACTTCTGGACTTCTGG+CGG | 0.638427 | tig0019145:-14124 | None:intergenic |
| GTGAAACTTCAGAGGTCGGG+TGG | 0.639286 | tig0019145:+14077 | Msa1371110:CDS |
| CCTTGGCAAATGAGACAGCA+AGG | 0.641711 | tig0019145:-15016 | None:intergenic |
| ACTAAGAAGCATCCTTGACA+AGG | 0.644015 | tig0019145:-13183 | None:intergenic |
| TGGAATGGTGTTAAATACCA+TGG | 0.644511 | tig0019145:+13614 | Msa1371110:CDS |
| CATGGGATGGATAGAAGGAG+TGG | 0.650431 | tig0019145:+13632 | Msa1371110:CDS |
| TAGATGTTGTGAAACTTCAG+AGG | 0.652011 | tig0019145:+14069 | Msa1371110:CDS |
| ATGAGACAGCAAGGACTGCG+TGG | 0.652105 | tig0019145:-15007 | None:intergenic |
| GGAATGGTGTTAAATACCAT+GGG | 0.654726 | tig0019145:+13615 | Msa1371110:CDS |
| TTAAGGAGTCGAAGACGAAG+AGG | 0.656307 | tig0019145:-12380 | None:intergenic |
| GTCCAACAACAATCACCCTA+GGG | 0.657175 | tig0019145:-13139 | None:intergenic |
| GGTGCTACCATTGAAATGGA+TGG | 0.657214 | tig0019145:+12581 | Msa1371110:CDS |
| CCACGGCAGCTCCACCGTCG+TGG | 0.657497 | tig0019145:+12140 | Msa1371110:five_prime_UTR |
| AGTGCTTGTCAAGGAGCTCG+CGG | 0.657958 | tig0019145:+13545 | Msa1371110:CDS |
| ATGGGATGGATAGAAGGAGT+GGG | 0.661981 | tig0019145:+13633 | Msa1371110:CDS |
| TCCTGAAACTGGTTATACCG+CGG | 0.672527 | tig0019145:+12607 | Msa1371110:CDS |
| TCTGTTGTCGCCAAATACCA+CGG | 0.678735 | tig0019145:+12123 | Msa1371110:five_prime_UTR |
| CGAATTTGAACCAGTAACAG+CGG | 0.691935 | tig0019145:-12291 | None:intergenic |
| TAGTCTTTAATGGCGTATGG+CGG | 0.711686 | tig0019145:+12260 | Msa1371110:exon |
| ACGGCGAACTTGAGTCTGGG+AGG | 0.717660 | tig0019145:-12458 | None:intergenic |
| TTTATGGACACACATCTCCG+AGG | 0.722635 | tig0019145:+13357 | Msa1371110:CDS |
| AAAGTGATTTACCTCATCCG+CGG | 0.723753 | tig0019145:-12624 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTATTATTAA+GGG | + | tig0019145:12988-13007 | Msa1371110:intron | 0.0% |
| !! | ATAATAATTATATTATAATT+TGG | - | tig0019145:15986-16005 | None:intergenic | 0.0% |
| !!! | TATTATAATTTTTGTAAACT+TGG | + | tig0019145:13967-13986 | Msa1371110:intron | 10.0% |
| !!! | ATTTTTAAATGTTAGTTAAA+TGG | + | tig0019145:14239-14258 | Msa1371110:intron | 10.0% |
| !!! | TTTTTAAATGTTAGTTAAAT+GGG | + | tig0019145:14240-14259 | Msa1371110:intron | 10.0% |
| !! | ACATAAAAATAATATAACTA+AGG | + | tig0019145:15417-15436 | Msa1371110:intron | 10.0% |
| !! | AAAATTGAATTGAATTGAAT+TGG | + | tig0019145:12057-12076 | Msa1371110:five_prime_UTR | 15.0% |
| !! | AAGTAAGTAATAATAGATAA+GGG | - | tig0019145:12200-12219 | None:intergenic | 15.0% |
| !! | AAAGTAAGTAATAATAGATA+AGG | - | tig0019145:12201-12220 | None:intergenic | 15.0% |
| !! | TTAATAGTTGAAAATATGAT+AGG | - | tig0019145:13400-13419 | None:intergenic | 15.0% |
| !!! | TCATATTTTCAACTATTAAT+TGG | + | tig0019145:13401-13420 | Msa1371110:intron | 15.0% |
| !! | TACTGAAAAAAAGAATTATT+TGG | - | tig0019145:13506-13525 | None:intergenic | 15.0% |
| !! | AAATAGATAGAATTAAGTAT+TGG | + | tig0019145:14481-14500 | Msa1371110:intron | 15.0% |
| !!! | AAATTTGAAATATTAGAATG+AGG | - | tig0019145:14861-14880 | None:intergenic | 15.0% |
| !! | AGTAAGTAATAATAGATAAG+GGG | - | tig0019145:12199-12218 | None:intergenic | 20.0% |
| !! | ATTGAAAATTGGTATAAAAG+AGG | - | tig0019145:12505-12524 | None:intergenic | 20.0% |
| !! | ACATAATTTATTTGTGTGTT+AGG | + | tig0019145:12544-12563 | Msa1371110:intron | 20.0% |
| !!! | TTTTTTGTTTGTTTTGTGTA+TGG | + | tig0019145:12909-12928 | Msa1371110:intron | 20.0% |
| !! | TAAGTATCAAATGATTTGAT+TGG | + | tig0019145:13110-13129 | Msa1371110:intron | 20.0% |
| !! | TTCAATTCAACAATAATGTA+AGG | - | tig0019145:13682-13701 | None:intergenic | 20.0% |
| !!! | AAAATCAAGGTATTAGTTAT+GGG | - | tig0019145:13905-13924 | None:intergenic | 20.0% |
| !!! | AAAAATCAAGGTATTAGTTA+TGG | - | tig0019145:13906-13925 | None:intergenic | 20.0% |
| !!! | TTATTTTGAGTGAAAAATCA+AGG | - | tig0019145:13918-13937 | None:intergenic | 20.0% |
| !! | AAAATAAATGAATCTTCCTT+TGG | + | tig0019145:13931-13950 | Msa1371110:intron | 20.0% |
| !! | AAATAAATGAATCTTCCTTT+GGG | + | tig0019145:13932-13951 | Msa1371110:intron | 20.0% |
| !!! | TCTTATTTTTTTCGTTTTAG+AGG | + | tig0019145:14210-14229 | Msa1371110:intron | 20.0% |
| !! | AAAACATAAAATTTGAGTGA+AGG | + | tig0019145:14531-14550 | Msa1371110:intron | 20.0% |
| !! | AAACATAAAATTTGAGTGAA+GGG | + | tig0019145:14532-14551 | Msa1371110:intron | 20.0% |
| !!! | ATAGTTCTTTTGAAAATAGT+AGG | + | tig0019145:14557-14576 | Msa1371110:intron | 20.0% |
| !! | CAAAAGCAACAAATAATATA+GGG | - | tig0019145:15156-15175 | None:intergenic | 20.0% |
| !! | TCAAAAGCAACAAATAATAT+AGG | - | tig0019145:15157-15176 | None:intergenic | 20.0% |
| !! | AAAGTTCAAAATAACCAAAA+TGG | - | tig0019145:15255-15274 | None:intergenic | 20.0% |
| !!! | AGATTTTGTTATGTTGTTTA+TGG | + | tig0019145:15653-15672 | Msa1371110:intron | 20.0% |
| !! | TCTATTACAAAAATGTTCAT+CGG | - | tig0019145:15819-15838 | None:intergenic | 20.0% |
| !! | TTGATCAATGTAAATACTAA+CGG | + | tig0019145:15889-15908 | Msa1371110:three_prime_UTR | 20.0% |
| ! | GTAAGTAATAATAGATAAGG+GGG | - | tig0019145:12198-12217 | None:intergenic | 25.0% |
| ! | AATTTCACTTGCTTAATTGT+CGG | - | tig0019145:12320-12339 | None:intergenic | 25.0% |
| ! | AAAATTGGTATAAAAGAGGA+TGG | - | tig0019145:12501-12520 | None:intergenic | 25.0% |
| ! | CTAGCAGAAAAATTGAAAAT+TGG | - | tig0019145:12516-12535 | None:intergenic | 25.0% |
| !! | TTTTAAATTTCAGACACCAA+TGG | + | tig0019145:12721-12740 | Msa1371110:intron | 25.0% |
| ! | ACATTTACATAACTAACCAT+TGG | - | tig0019145:12740-12759 | None:intergenic | 25.0% |
| !! | AATTACAGCTTTAATTACCT+CGG | - | tig0019145:13377-13396 | None:intergenic | 25.0% |
| !! | GATTGTATTTTCATTTCCTT+GGG | - | tig0019145:13482-13501 | None:intergenic | 25.0% |
| !! | TGATTGTATTTTCATTTCCT+TGG | - | tig0019145:13483-13502 | None:intergenic | 25.0% |
| ! | AACAATAATGTAAGGTTCAA+AGG | - | tig0019145:13674-13693 | None:intergenic | 25.0% |
| ! | TGATTACTACATCTTGATTA+TGG | + | tig0019145:13734-13753 | Msa1371110:intron | 25.0% |
| !! | AAATCAAGGTATTAGTTATG+GGG | - | tig0019145:13904-13923 | None:intergenic | 25.0% |
| ! | TATTGAAAAGTGGAAAAGTA+GGG | - | tig0019145:14162-14181 | None:intergenic | 25.0% |
| ! | ATATTGAAAAGTGGAAAAGT+AGG | - | tig0019145:14163-14182 | None:intergenic | 25.0% |
| ! | ATGCAGAAAATATTGAAAAG+TGG | - | tig0019145:14172-14191 | None:intergenic | 25.0% |
| !! | TTTTACAATAGAACCTCAAT+GGG | - | tig0019145:14305-14324 | None:intergenic | 25.0% |
| !! | TTTTTACAATAGAACCTCAA+TGG | - | tig0019145:14306-14325 | None:intergenic | 25.0% |
| ! | TAACATTTGATATGTTGAAG+TGG | - | tig0019145:14398-14417 | None:intergenic | 25.0% |
| ! | ATTTCAAGGTAACTATGATT+TGG | + | tig0019145:15053-15072 | Msa1371110:intron | 25.0% |
| ! | AGAAATAAAAGTGACAGAAA+TGG | + | tig0019145:15197-15216 | Msa1371110:intron | 25.0% |
| !! | AAGACTTAGTTTAACCATTT+TGG | + | tig0019145:15238-15257 | Msa1371110:intron | 25.0% |
| ! | AAGATACAATGTAGGAAATT+GGG | - | tig0019145:15550-15569 | None:intergenic | 25.0% |
| ! | TAAGATACAATGTAGGAAAT+TGG | - | tig0019145:15551-15570 | None:intergenic | 25.0% |
| !! | TTAATGTGTCACATCTTTTA+TGG | + | tig0019145:15568-15587 | Msa1371110:intron | 25.0% |
| !!! | TTTTGTTATGTTGTTTATGG+AGG | + | tig0019145:15656-15675 | Msa1371110:intron | 25.0% |
| ! | TCCAAGCAAGTATTTAATTA+TGG | + | tig0019145:15766-15785 | Msa1371110:CDS | 25.0% |
| ! | CCAAGCAAGTATTTAATTAT+GGG | + | tig0019145:15767-15786 | Msa1371110:CDS | 25.0% |
| !! | GTAATTTATGATCCTTTTGT+GGG | + | tig0019145:15911-15930 | Msa1371110:three_prime_UTR | 25.0% |
| !! | TAATTTATGATCCTTTTGTG+GGG | + | tig0019145:15912-15931 | Msa1371110:three_prime_UTR | 25.0% |
| ! | ATATTGCTTGAAAAAGAGAA+AGG | - | tig0019145:15963-15982 | None:intergenic | 25.0% |
| GACAATTAAGCAAGTGAAAT+TGG | + | tig0019145:12319-12338 | Msa1371110:CDS | 30.0% | |
| ! | TTGTGTGTTAGGTTTTTACT+TGG | + | tig0019145:12555-12574 | Msa1371110:intron | 30.0% |
| ! | TGTTAGGTTTTTACTTGGTA+TGG | + | tig0019145:12560-12579 | Msa1371110:intron | 30.0% |
| !!! | AATGTGCATGCTATTTTAGA+AGG | + | tig0019145:12755-12774 | Msa1371110:CDS | 30.0% |
| ! | TTTTATTGTGTCTCGTGATT+AGG | + | tig0019145:12839-12858 | Msa1371110:intron | 30.0% |
| TTATTATAGATTGCCGTGTT+TGG | + | tig0019145:13028-13047 | Msa1371110:intron | 30.0% | |
| AAATTTCGTTCTTCCAAACA+CGG | - | tig0019145:13044-13063 | None:intergenic | 30.0% | |
| ! | ATCAAATGATTTGATTGGTC+AGG | + | tig0019145:13115-13134 | Msa1371110:intron | 30.0% |
| ! | TCAAATGATTTGATTGGTCA+GGG | + | tig0019145:13116-13135 | Msa1371110:intron | 30.0% |
| !! | ATGCCTCTTGTTTACTTTTA+TGG | + | tig0019145:13341-13360 | Msa1371110:CDS | 30.0% |
| TGTCCATAAAAGTAAACAAG+AGG | - | tig0019145:13347-13366 | None:intergenic | 30.0% | |
| ! | ATTGTATAAAGTGCTTGTCA+AGG | + | tig0019145:13536-13555 | Msa1371110:CDS | 30.0% |
| TTACTACATCTTGATTATGG+TGG | + | tig0019145:13737-13756 | Msa1371110:intron | 30.0% | |
| AGTGTGATGCATAATAGATA+AGG | - | tig0019145:13880-13899 | None:intergenic | 30.0% | |
| ! | ATTTTTGTAAACTTGGTCTC+AGG | + | tig0019145:13974-13993 | Msa1371110:intron | 30.0% |
| TTTCCTATAAGGAGTTCAAA+CGG | - | tig0019145:14004-14023 | None:intergenic | 30.0% | |
| AGTTTCACAACATCTACTTT+AGG | - | tig0019145:14065-14084 | None:intergenic | 30.0% | |
| ACTTACATAGCATTTGCAAA+AGG | + | tig0019145:14329-14348 | Msa1371110:intron | 30.0% | |
| ATATGTTGAAGTGGAATCAT+GGG | - | tig0019145:14389-14408 | None:intergenic | 30.0% | |
| CTTGTAAGCACATATTTGTT+TGG | + | tig0019145:14618-14637 | Msa1371110:intron | 30.0% | |
| AATATCCAGAAGCAATCTTT+GGG | - | tig0019145:14660-14679 | None:intergenic | 30.0% | |
| AAATATCCAGAAGCAATCTT+TGG | - | tig0019145:14661-14680 | None:intergenic | 30.0% | |
| ! | GATATTTTGCTTAGTAGCTT+TGG | + | tig0019145:14674-14693 | Msa1371110:intron | 30.0% |
| CAAGAAAAAAACTAACCCAA+AGG | - | tig0019145:14700-14719 | None:intergenic | 30.0% | |
| GAGTTACAAAATAGTTGAAC+AGG | - | tig0019145:14771-14790 | None:intergenic | 30.0% | |
| ! | TTGATGCAGGAATACTTTTA+TGG | + | tig0019145:14816-14835 | Msa1371110:intron | 30.0% |
| GACTTATTTGTTTATCGAGT+TGG | + | tig0019145:14885-14904 | Msa1371110:CDS | 30.0% | |
| !! | TTATTTGTTTATCGAGTTGG+TGG | + | tig0019145:14888-14907 | Msa1371110:CDS | 30.0% |
| CTTGAACGAGTATTAAGATT+TGG | - | tig0019145:15096-15115 | None:intergenic | 30.0% | |
| !! | GATTTTCTTTTGAAGGACAA+AGG | - | tig0019145:15281-15300 | None:intergenic | 30.0% |
| GTTATAGATTTGACGTGTAA+TGG | + | tig0019145:15344-15363 | Msa1371110:intron | 30.0% | |
| AAAATACCAAAACTGTGTTG+TGG | + | tig0019145:15380-15399 | Msa1371110:intron | 30.0% | |
| ! | AAAATTCCACAACACAGTTT+TGG | - | tig0019145:15389-15408 | None:intergenic | 30.0% |
| ATAACTAAGGAAAATGCTAC+TGG | + | tig0019145:15430-15449 | Msa1371110:intron | 30.0% | |
| AGATACAATGTAGGAAATTG+GGG | - | tig0019145:15549-15568 | None:intergenic | 30.0% | |
| GACACATTAAGATACAATGT+AGG | - | tig0019145:15558-15577 | None:intergenic | 30.0% | |
| CCCATAATTAAATACTTGCT+TGG | - | tig0019145:15770-15789 | None:intergenic | 30.0% | |
| TAATTATGGGAACCTTAACA+TGG | + | tig0019145:15780-15799 | Msa1371110:CDS | 30.0% | |
| ! | GGTAATTTATGATCCTTTTG+TGG | + | tig0019145:15910-15929 | Msa1371110:three_prime_UTR | 30.0% |
| ! | AATTTATGATCCTTTTGTGG+GGG | + | tig0019145:15913-15932 | Msa1371110:three_prime_UTR | 30.0% |
| ! | AGATGTGAAGTGAAGTCTTT+TGG | - | tig0019145:12106-12125 | None:intergenic | 35.0% |
| AAATCTCAGCGTTTCCATTA+AGG | - | tig0019145:12400-12419 | None:intergenic | 35.0% | |
| ! | AATGGAAACGCTGAGATTTT+TGG | + | tig0019145:12401-12420 | Msa1371110:CDS | 35.0% |
| TGGTATAAAAGAGGATGGAA+GGG | - | tig0019145:12496-12515 | None:intergenic | 35.0% | |
| TTGGTATAAAAGAGGATGGA+AGG | - | tig0019145:12497-12516 | None:intergenic | 35.0% | |
| !! | CTTTCTTTGAAACTCACTCA+TGG | + | tig0019145:12665-12684 | Msa1371110:intron | 35.0% |
| GATAATACAGAGTCATCTGA+AGG | - | tig0019145:12806-12825 | None:intergenic | 35.0% | |
| AGATGACTCTGTATTATCTC+AGG | + | tig0019145:12808-12827 | Msa1371110:CDS | 35.0% | |
| GGAAGAACGAAATTTGTGAT+TGG | + | tig0019145:13049-13068 | Msa1371110:intron | 35.0% | |
| ! | AACGAAATTTGTGATTGGTC+AGG | + | tig0019145:13054-13073 | Msa1371110:intron | 35.0% |
| ATATCCAAGTCAACAAAGGT+GGG | - | tig0019145:13233-13252 | None:intergenic | 35.0% | |
| AATATCCAAGTCAACAAAGG+TGG | - | tig0019145:13234-13253 | None:intergenic | 35.0% | |
| !! | ACCTTTGTTGACTTGGATAT+TGG | + | tig0019145:13233-13252 | Msa1371110:CDS | 35.0% |
| !! | TAAACAAGAGGCATTTCAAG+AGG | - | tig0019145:13335-13354 | None:intergenic | 35.0% |
| AATCATTAACAGCAAACCCA+AGG | + | tig0019145:13463-13482 | Msa1371110:intron | 35.0% | |
| ! | TGGAATGGTGTTAAATACCA+TGG | + | tig0019145:13614-13633 | Msa1371110:CDS | 35.0% |
| ! | GGAATGGTGTTAAATACCAT+GGG | + | tig0019145:13615-13634 | Msa1371110:CDS | 35.0% |
| CAAAAGAACAAGTAAGAGAG+GGG | - | tig0019145:13772-13791 | None:intergenic | 35.0% | |
| CCAAAAGAACAAGTAAGAGA+GGG | - | tig0019145:13773-13792 | None:intergenic | 35.0% | |
| ACCAAAAGAACAAGTAAGAG+AGG | - | tig0019145:13774-13793 | None:intergenic | 35.0% | |
| !! | ATTCAAGGCTGATGTTGTTT+TGG | + | tig0019145:13832-13851 | Msa1371110:CDS | 35.0% |
| !!! | GCTGATGTTGTTTTGGTTTT+GGG | + | tig0019145:13839-13858 | Msa1371110:CDS | 35.0% |
| TAAATGAATCTTCCTTTGGG+AGG | + | tig0019145:13935-13954 | Msa1371110:intron | 35.0% | |
| TTTCCGTTTGAACTCCTTAT+AGG | + | tig0019145:13998-14017 | Msa1371110:intron | 35.0% | |
| ! | ACTGCACAGTTTTTCCTATA+AGG | - | tig0019145:14015-14034 | None:intergenic | 35.0% |
| TAGATGTTGTGAAACTTCAG+AGG | + | tig0019145:14069-14088 | Msa1371110:CDS | 35.0% | |
| AGTCCAGAAGTAATAGGATA+AGG | + | tig0019145:14132-14151 | Msa1371110:CDS | 35.0% | |
| GTCCAGAAGTAATAGGATAA+GGG | + | tig0019145:14133-14152 | Msa1371110:CDS | 35.0% | |
| TACCCTTATCCTATTACTTC+TGG | - | tig0019145:14138-14157 | None:intergenic | 35.0% | |
| GATATGTTGAAGTGGAATCA+TGG | - | tig0019145:14390-14409 | None:intergenic | 35.0% | |
| ATTAACTGCAATTAGCAGCT+TGG | - | tig0019145:14436-14455 | None:intergenic | 35.0% | |
| !! | AACAGTGCTGATAAATGCAA+AGG | - | tig0019145:14585-14604 | None:intergenic | 35.0% |
| TACAAAATAGTTGAACAGGC+AGG | - | tig0019145:14767-14786 | None:intergenic | 35.0% | |
| !! | CTGCTATTTGATTTTGATGC+AGG | + | tig0019145:14803-14822 | Msa1371110:intron | 35.0% |
| GAGGAGAAAGATCATTTGTA+AGG | - | tig0019145:14842-14861 | None:intergenic | 35.0% | |
| AACCTGATGAGATCATTTCA+AGG | + | tig0019145:15039-15058 | Msa1371110:CDS | 35.0% | |
| TACCTTGAAATGATCTCATC+AGG | - | tig0019145:15044-15063 | None:intergenic | 35.0% | |
| TAGGGATCAAACACTATCAT+CGG | - | tig0019145:15138-15157 | None:intergenic | 35.0% | |
| !! | TTTCTTTTGAAGGACAAAGG+AGG | - | tig0019145:15278-15297 | None:intergenic | 35.0% |
| ! | TGCACAGGATTTTCTTTTGA+AGG | - | tig0019145:15288-15307 | None:intergenic | 35.0% |
| ATAGCATCACATCTCACAAA+CGG | - | tig0019145:15318-15337 | None:intergenic | 35.0% | |
| TGAGATGTGATGCTATATCA+AGG | + | tig0019145:15322-15341 | Msa1371110:intron | 35.0% | |
| AAGCCACCTAAATAAGGTTA+GGG | - | tig0019145:15465-15484 | None:intergenic | 35.0% | |
| AAAGCCACCTAAATAAGGTT+AGG | - | tig0019145:15466-15485 | None:intergenic | 35.0% | |
| TCAACAAAGCCACCTAAATA+AGG | - | tig0019145:15471-15490 | None:intergenic | 35.0% | |
| GTCTGTTACATAGATAAAGC+CGG | - | tig0019145:15607-15626 | None:intergenic | 35.0% | |
| TAACAGACATTGACATTCAG+AGG | + | tig0019145:15619-15638 | Msa1371110:CDS | 35.0% | |
| TCAAGTTTCAAGCCATGTTA+AGG | - | tig0019145:15795-15814 | None:intergenic | 35.0% | |
| GTAATAGACAGTCATTCTCT+TGG | + | tig0019145:15831-15850 | Msa1371110:three_prime_UTR | 35.0% | |
| CATTGATCAAGACTTGAGAT+TGG | - | tig0019145:15879-15898 | None:intergenic | 35.0% | |
| ! | ATTTATGATCCTTTTGTGGG+GGG | + | tig0019145:15914-15933 | Msa1371110:three_prime_UTR | 35.0% |
| AGATAAGGGGGAGAATGATA+GGG | - | tig0019145:12186-12205 | None:intergenic | 40.0% | |
| TAGATAAGGGGGAGAATGAT+AGG | - | tig0019145:12187-12206 | None:intergenic | 40.0% | |
| ! | ACCCAAACCCTAGTCTTTAA+TGG | + | tig0019145:12250-12269 | Msa1371110:exon | 40.0% |
| GCCATTAAAGACTAGGGTTT+GGG | - | tig0019145:12254-12273 | None:intergenic | 40.0% | |
| CCATACGCCATTAAAGACTA+GGG | - | tig0019145:12260-12279 | None:intergenic | 40.0% | |
| TAGTCTTTAATGGCGTATGG+CGG | + | tig0019145:12260-12279 | Msa1371110:exon | 40.0% | |
| GAATTTGAACCAGTAACAGC+GGG | - | tig0019145:12293-12312 | None:intergenic | 40.0% | |
| CGAATTTGAACCAGTAACAG+CGG | - | tig0019145:12294-12313 | None:intergenic | 40.0% | |
| AAATTGAGCCAGATTTCAGG+TGG | - | tig0019145:12437-12456 | None:intergenic | 40.0% | |
| GGAAAATTGAGCCAGATTTC+AGG | - | tig0019145:12440-12459 | None:intergenic | 40.0% | |
| GGAAGGGAATAGAAGAGTTA+CGG | - | tig0019145:12480-12499 | None:intergenic | 40.0% | |
| !! | GTATGGTGCTACCATTGAAA+TGG | + | tig0019145:12577-12596 | Msa1371110:CDS | 40.0% |
| !! | AGGAGTACCATCCATTTCAA+TGG | - | tig0019145:12591-12610 | None:intergenic | 40.0% |
| AAAGTGATTTACCTCATCCG+CGG | - | tig0019145:12627-12646 | None:intergenic | 40.0% | |
| TCTCGTGATTAGGAGAAGAT+TGG | + | tig0019145:12849-12868 | Msa1371110:intron | 40.0% | |
| TGGATGCTTCATGTATCTGT+TGG | + | tig0019145:12869-12888 | Msa1371110:intron | 40.0% | |
| GTAGTCTTTCCAGAATCTGA+AGG | - | tig0019145:13164-13183 | None:intergenic | 40.0% | |
| !! | ACTAAGAAGCATCCTTGACA+AGG | - | tig0019145:13186-13205 | None:intergenic | 40.0% |
| TGTCAAGGATGCTTCTTAGT+TGG | + | tig0019145:13186-13205 | Msa1371110:CDS | 40.0% | |
| GTCAAGGATGCTTCTTAGTT+GGG | + | tig0019145:13187-13206 | Msa1371110:CDS | 40.0% | |
| GCCAATATCCAAGTCAACAA+AGG | - | tig0019145:13237-13256 | None:intergenic | 40.0% | |
| !! | TTGACTTGGATATTGGCCAA+GGG | + | tig0019145:13240-13259 | Msa1371110:CDS | 40.0% |
| CAGGAATTGTTATAGACCCT+TGG | - | tig0019145:13259-13278 | None:intergenic | 40.0% | |
| CAAGGGTCTATAACAATTCC+TGG | + | tig0019145:13257-13276 | Msa1371110:CDS | 40.0% | |
| AATTGAAATGCCCATCGATC+CGG | + | tig0019145:13298-13317 | Msa1371110:CDS | 40.0% | |
| ATACTGGAGAGACAATTTGC+TGG | + | tig0019145:13570-13589 | Msa1371110:CDS | 40.0% | |
| ! | TGGTGTTAAATACCATGGGA+TGG | + | tig0019145:13619-13638 | Msa1371110:CDS | 40.0% |
| AATACCATGGGATGGATAGA+AGG | + | tig0019145:13627-13646 | Msa1371110:CDS | 40.0% | |
| ! | CCCTCTCTTACTTGTTCTTT+TGG | + | tig0019145:13770-13789 | Msa1371110:intron | 40.0% |
| CAACATCAGCCTTGAATGTA+CGG | - | tig0019145:13829-13848 | None:intergenic | 40.0% | |
| !!! | GGCTGATGTTGTTTTGGTTT+TGG | + | tig0019145:13838-13857 | Msa1371110:CDS | 40.0% |
| TGTTGTGAAACTTCAGAGGT+CGG | + | tig0019145:14073-14092 | Msa1371110:CDS | 40.0% | |
| TATTACTTCTGGACTTCTGG+CGG | - | tig0019145:14127-14146 | None:intergenic | 40.0% | |
| TCCTATTACTTCTGGACTTC+TGG | - | tig0019145:14130-14149 | None:intergenic | 40.0% | |
| ATCATGGGAATATGAGGTCA+CGG | - | tig0019145:14374-14393 | None:intergenic | 40.0% | |
| AGTGGAATCATGGGAATATG+AGG | - | tig0019145:14380-14399 | None:intergenic | 40.0% | |
| GTGAATGTTAAGAATGCCCA+AGG | - | tig0019145:14736-14755 | None:intergenic | 40.0% | |
| !! | TTTGTTTATCGAGTTGGTGG+TGG | + | tig0019145:14891-14910 | Msa1371110:CDS | 40.0% |
| !! | TTGTTTATCGAGTTGGTGGT+GGG | + | tig0019145:14892-14911 | Msa1371110:CDS | 40.0% |
| AATGATCTCATCAGGTTCCT+TGG | - | tig0019145:15036-15055 | None:intergenic | 40.0% | |
| AGGGATCAAACACTATCATC+GGG | - | tig0019145:15137-15156 | None:intergenic | 40.0% | |
| AAGAAAATCCTGTGCAAACG+AGG | + | tig0019145:15292-15311 | Msa1371110:intron | 40.0% | |
| ! | GCTTGACCCTAACCTTATTT+AGG | + | tig0019145:15456-15475 | Msa1371110:intron | 40.0% |
| ! | TGACCCTAACCTTATTTAGG+TGG | + | tig0019145:15459-15478 | Msa1371110:intron | 40.0% |
| CAATGTAGGAAATTGGGGAT+GGG | - | tig0019145:15544-15563 | None:intergenic | 40.0% | |
| ACAATGTAGGAAATTGGGGA+TGG | - | tig0019145:15545-15564 | None:intergenic | 40.0% | |
| TCTGTTGTCGCCAAATACCA+CGG | + | tig0019145:12123-12142 | Msa1371110:five_prime_UTR | 45.0% | |
| CGCCATTAAAGACTAGGGTT+TGG | - | tig0019145:12255-12274 | None:intergenic | 45.0% | |
| ! | CCCTAGTCTTTAATGGCGTA+TGG | + | tig0019145:12257-12276 | Msa1371110:exon | 45.0% |
| GCCATACGCCATTAAAGACT+AGG | - | tig0019145:12261-12280 | None:intergenic | 45.0% | |
| TTAAGGAGTCGAAGACGAAG+AGG | - | tig0019145:12383-12402 | None:intergenic | 45.0% | |
| CTTCGTCTTCGACTCCTTAA+TGG | + | tig0019145:12383-12402 | Msa1371110:CDS | 45.0% | |
| ! | GGTGCTACCATTGAAATGGA+TGG | + | tig0019145:12581-12600 | Msa1371110:CDS | 45.0% |
| ATGGATGGTACTCCTGAAAC+TGG | + | tig0019145:12596-12615 | Msa1371110:CDS | 45.0% | |
| TCCTGAAACTGGTTATACCG+CGG | + | tig0019145:12607-12626 | Msa1371110:CDS | 45.0% | |
| !! | CTTTGAAACTCACTCATGGC+TGG | + | tig0019145:12669-12688 | Msa1371110:intron | 45.0% |
| GTCCAACAACAATCACCCTA+GGG | - | tig0019145:13142-13161 | None:intergenic | 45.0% | |
| GTTGTTGGACCTTCAGATTC+TGG | + | tig0019145:13152-13171 | Msa1371110:CDS | 45.0% | |
| CTGGAAAGACTACCTTGTCA+AGG | + | tig0019145:13171-13190 | Msa1371110:CDS | 45.0% | |
| CTTAGTTGGGCAGCAAAACA+AGG | + | tig0019145:13200-13219 | Msa1371110:CDS | 45.0% | |
| !! | GTTGACTTGGATATTGGCCA+AGG | + | tig0019145:13239-13258 | Msa1371110:CDS | 45.0% |
| GATGGGCATTTCAATTGGAG+TGG | - | tig0019145:13294-13313 | None:intergenic | 45.0% | |
| GGATCGATGGGCATTTCAAT+TGG | - | tig0019145:13299-13318 | None:intergenic | 45.0% | |
| TTTATGGACACACATCTCCG+AGG | + | tig0019145:13357-13376 | Msa1371110:CDS | 45.0% | |
| ATGGGATGGATAGAAGGAGT+GGG | + | tig0019145:13633-13652 | Msa1371110:CDS | 45.0% | |
| GCATGCAATCCGTACATTCA+AGG | + | tig0019145:13817-13836 | Msa1371110:CDS | 45.0% | |
| !!! | TGTTGTTTTGGTTTTGGGCC+AGG | + | tig0019145:13844-13863 | Msa1371110:CDS | 45.0% |
| AGATAAGGCTACCATCTACC+TGG | - | tig0019145:13865-13884 | None:intergenic | 45.0% | |
| ! | ATATACAGAGCACCTCCCAA+AGG | - | tig0019145:13950-13969 | None:intergenic | 45.0% |
| TTTGCTCAGAGACGTGCTTA+AGG | + | tig0019145:14034-14053 | Msa1371110:CDS | 45.0% | |
| TTGCTCAGAGACGTGCTTAA+GGG | + | tig0019145:14035-14054 | Msa1371110:CDS | 45.0% | |
| GTTGTGAAACTTCAGAGGTC+GGG | + | tig0019145:14074-14093 | Msa1371110:CDS | 45.0% | |
| GCCAGAAGTCCAGAAGTAAT+AGG | + | tig0019145:14126-14145 | Msa1371110:CDS | 45.0% | |
| GGCAAGTTGTAACCACAGTT+GGG | + | tig0019145:14261-14280 | Msa1371110:intron | 45.0% | |
| GCAAGTTGTAACCACAGTTG+GGG | + | tig0019145:14262-14281 | Msa1371110:intron | 45.0% | |
| TGTAACCACAGTTGGGGTTT+AGG | + | tig0019145:14268-14287 | Msa1371110:intron | 45.0% | |
| GTAACCACAGTTGGGGTTTA+GGG | + | tig0019145:14269-14288 | Msa1371110:intron | 45.0% | |
| CAAAAGGCCTATTACACGAC+TGG | + | tig0019145:14345-14364 | Msa1371110:intron | 45.0% | |
| TCATGGGAATATGAGGTCAC+GGG | - | tig0019145:14373-14392 | None:intergenic | 45.0% | |
| CATTGCCCAAAGATTGCTTC+TGG | + | tig0019145:14652-14671 | Msa1371110:intron | 45.0% | |
| !! | TGCTTAGTAGCTTTGGCCTT+TGG | + | tig0019145:14681-14700 | Msa1371110:intron | 45.0% |
| !! | GCTTAGTAGCTTTGGCCTTT+GGG | + | tig0019145:14682-14701 | Msa1371110:intron | 45.0% |
| ! | TTGTTTTCTCCCTGCTCCTT+GGG | + | tig0019145:14717-14736 | Msa1371110:intron | 45.0% |
| TTAAGAATGCCCAAGGAGCA+GGG | - | tig0019145:14729-14748 | None:intergenic | 45.0% | |
| TTCACAGCTACAACTCTCGT+TGG | - | tig0019145:14969-14988 | None:intergenic | 45.0% | |
| AGGAAATTGGGGATGGGAAA+GGG | - | tig0019145:15538-15557 | None:intergenic | 45.0% | |
| TAGGAAATTGGGGATGGGAA+AGG | - | tig0019145:15539-15558 | None:intergenic | 45.0% | |
| TTATGGTGCAGCAATGTTGC+CGG | + | tig0019145:15585-15604 | Msa1371110:intron | 45.0% | |
| ACATACCTTACACCATCTGC+TGG | + | tig0019145:15737-15756 | Msa1371110:CDS | 45.0% | |
| AGAAAGGTCAGCATTCCACT+AGG | - | tig0019145:15947-15966 | None:intergenic | 45.0% | |
| !! | CATTATTATTATTATTATTA+AGG | + | tig0019145:12987-13006 | Msa1371110:intron | 5.0% |
| ! | TAGGGTTTGGGTTTGTGAGG+CGG | - | tig0019145:12242-12261 | None:intergenic | 50.0% |
| ! | GACTAGGGTTTGGGTTTGTG+AGG | - | tig0019145:12245-12264 | None:intergenic | 50.0% |
| TCGAAGACGAAGAGGTGAGT+CGG | - | tig0019145:12375-12394 | None:intergenic | 50.0% | |
| ! | CCAGATTTCAGGTGGAAGCT+CGG | - | tig0019145:12429-12448 | None:intergenic | 50.0% |
| GTTACGGCGAACTTGAGTCT+GGG | - | tig0019145:12464-12483 | None:intergenic | 50.0% | |
| AGTTACGGCGAACTTGAGTC+TGG | - | tig0019145:12465-12484 | None:intergenic | 50.0% | |
| TCCGCGGTATAACCAGTTTC+AGG | - | tig0019145:12611-12630 | None:intergenic | 50.0% | |
| AACTGGTTATACCGCGGATG+AGG | + | tig0019145:12613-12632 | Msa1371110:CDS | 50.0% | |
| TGAAACTCACTCATGGCTGG+CGG | + | tig0019145:12672-12691 | Msa1371110:intron | 50.0% | |
| ! | ATTTGATTGGTCAGGGCCCT+AGG | + | tig0019145:13123-13142 | Msa1371110:intron | 50.0% |
| ! | TTTGATTGGTCAGGGCCCTA+GGG | + | tig0019145:13124-13143 | Msa1371110:intron | 50.0% |
| GGTCCAACAACAATCACCCT+AGG | - | tig0019145:13143-13162 | None:intergenic | 50.0% | |
| GTTGGGCAGCAAAACAAGGT+TGG | + | tig0019145:13204-13223 | Msa1371110:CDS | 50.0% | |
| ! | GAAGCCCACCTTTGTTGACT+TGG | + | tig0019145:13226-13245 | Msa1371110:CDS | 50.0% |
| TCAAGAGGAATTCCCTCCAC+CGG | - | tig0019145:13320-13339 | None:intergenic | 50.0% | |
| TAACACCATTCCAGCAGCTC+TGG | - | tig0019145:13607-13626 | None:intergenic | 50.0% | |
| CACTCCTTCTATCCATCCCA+TGG | - | tig0019145:13634-13653 | None:intergenic | 50.0% | |
| CATGGGATGGATAGAAGGAG+TGG | + | tig0019145:13632-13651 | Msa1371110:CDS | 50.0% | |
| !!! | TTGGTTTTGGGCCAGGTAGA+TGG | + | tig0019145:13851-13870 | Msa1371110:intron | 50.0% |
| GGGCAAGTTGTAACCACAGT+TGG | + | tig0019145:14260-14279 | Msa1371110:intron | 50.0% | |
| ACGGGTTCCAGTCGTGTAAT+AGG | - | tig0019145:14355-14374 | None:intergenic | 50.0% | |
| !! | CTTGTTTTCTCCCTGCTCCT+TGG | + | tig0019145:14716-14735 | Msa1371110:intron | 50.0% |
| GTTAAGAATGCCCAAGGAGC+AGG | - | tig0019145:14730-14749 | None:intergenic | 50.0% | |
| AGGTTCTGCTCCAATTGGCA+AGG | - | tig0019145:14937-14956 | None:intergenic | 50.0% | |
| CCTTGGCAAATGAGACAGCA+AGG | - | tig0019145:15019-15038 | None:intergenic | 50.0% | |
| ! | CCTTGCTGTCTCATTTGCCA+AGG | + | tig0019145:15016-15035 | Msa1371110:CDS | 50.0% |
| GTTCTCCAGCAGATGGTGTA+AGG | - | tig0019145:15745-15764 | None:intergenic | 50.0% | |
| CTTGGAAGTTCTCCAGCAGA+TGG | - | tig0019145:15752-15771 | None:intergenic | 50.0% | |
| GGGAGAATGATAGGGCTTCG+CGG | - | tig0019145:12178-12197 | None:intergenic | 55.0% | |
| TTTGTGAGGCGGCGGAGATA+GGG | - | tig0019145:12231-12250 | None:intergenic | 55.0% | |
| TTAATGGCGTATGGCGGTGC+AGG | + | tig0019145:12266-12285 | Msa1371110:exon | 55.0% | |
| CCGAGCTTCCACCTGAAATC+TGG | + | tig0019145:12426-12445 | Msa1371110:CDS | 55.0% | |
| GGCCCTAGGGTGATTGTTGT+TGG | + | tig0019145:13137-13156 | Msa1371110:CDS | 55.0% | |
| TGAAATGCCCATCGATCCGG+TGG | + | tig0019145:13301-13320 | Msa1371110:CDS | 55.0% | |
| ATTCCCTCCACCGGATCGAT+GGG | - | tig0019145:13311-13330 | None:intergenic | 55.0% | |
| AATTCCCTCCACCGGATCGA+TGG | - | tig0019145:13312-13331 | None:intergenic | 55.0% | |
| AGTGCTTGTCAAGGAGCTCG+CGG | + | tig0019145:13545-13564 | Msa1371110:CDS | 55.0% | |
| !! | CATTCCAGCAGCTCTGGACT+CGG | - | tig0019145:13601-13620 | None:intergenic | 55.0% |
| GTGAAACTTCAGAGGTCGGG+TGG | + | tig0019145:14077-14096 | Msa1371110:CDS | 55.0% | |
| GGTCGGGTGGAGTTGTATCT+AGG | + | tig0019145:14090-14109 | Msa1371110:CDS | 55.0% | |
| GACTTCTGGCGGAACTTCAC+AGG | - | tig0019145:14116-14135 | None:intergenic | 55.0% | |
| CCTTCCCTAAACCCCAACTG+TGG | - | tig0019145:14276-14295 | None:intergenic | 55.0% | |
| CCACAGTTGGGGTTTAGGGA+AGG | + | tig0019145:14273-14292 | Msa1371110:intron | 55.0% | |
| GGGAAGGTTTGAGCCCATTG+AGG | + | tig0019145:14289-14308 | Msa1371110:intron | 55.0% | |
| GCAGCAGGTTCTGCTCCAAT+TGG | - | tig0019145:14942-14961 | None:intergenic | 55.0% | |
| ACTCTCGTTGGATCTGCAGC+AGG | - | tig0019145:14957-14976 | None:intergenic | 55.0% | |
| ATGAGACAGCAAGGACTGCG+TGG | - | tig0019145:15010-15029 | None:intergenic | 55.0% | |
| ACAAACGGCCTCGTTTGCAC+AGG | - | tig0019145:15303-15322 | None:intergenic | 55.0% | |
| GGAGAACAACCCCCCACAAA+AGG | - | tig0019145:15926-15945 | None:intergenic | 55.0% | |
| GGTGGAGCTGCCGTGGTATT+TGG | - | tig0019145:12136-12155 | None:intergenic | 60.0% | |
| GTTTGTGAGGCGGCGGAGAT+AGG | - | tig0019145:12232-12251 | None:intergenic | 60.0% | |
| ! | GGTTTGGGTTTGTGAGGCGG+CGG | - | tig0019145:12239-12258 | None:intergenic | 60.0% |
| ACGGCGAACTTGAGTCTGGG+AGG | - | tig0019145:12461-12480 | None:intergenic | 60.0% | |
| GGAGTGGCAGCAATGCATCC+AGG | - | tig0019145:13278-13297 | None:intergenic | 60.0% | |
| AATGCCCATCGATCCGGTGG+AGG | + | tig0019145:13304-13323 | Msa1371110:CDS | 60.0% | |
| ATGCCCATCGATCCGGTGGA+GGG | + | tig0019145:13305-13324 | Msa1371110:CDS | 60.0% | |
| GTGCTTGTCAAGGAGCTCGC+GGG | + | tig0019145:13546-13565 | Msa1371110:CDS | 60.0% | |
| TGCTTGTCAAGGAGCTCGCG+GGG | + | tig0019145:13547-13566 | Msa1371110:CDS | 60.0% | |
| AATGCCGAGTCCAGAGCTGC+TGG | + | tig0019145:13594-13613 | Msa1371110:CDS | 60.0% | |
| CGAGTCCAGAGCTGCTGGAA+TGG | + | tig0019145:13599-13618 | Msa1371110:CDS | 60.0% | |
| AAGGCAGAGCGTGGAGCTTG+TGG | - | tig0019145:14918-14937 | None:intergenic | 60.0% | |
| CCAATTGGCAAGGCAGAGCG+TGG | - | tig0019145:14927-14946 | None:intergenic | 60.0% | |
| CCACGCTCTGCCTTGCCAAT+TGG | + | tig0019145:14924-14943 | Msa1371110:CDS | 60.0% | |
| GTGGGGGGTTGTTCTCCTAG+TGG | + | tig0019145:15929-15948 | Msa1371110:three_prime_UTR | 60.0% | |
| ! | AGGGCTTCGCGGAAGTGCGA+CGG | - | tig0019145:12167-12186 | None:intergenic | 65.0% |
| GAGGCGGCGGAGATAGGGAA+TGG | - | tig0019145:12226-12245 | None:intergenic | 65.0% | |
| GGTGCAGGTCCCGCTGTTAC+TGG | + | tig0019145:12281-12300 | Msa1371110:CDS | 65.0% | |
| CTCACTCATGGCTGGCGGAG+AGG | + | tig0019145:12677-12696 | Msa1371110:intron | 65.0% | |
| CAAGGAGCTCGCGGGGATAC+TGG | + | tig0019145:13554-13573 | Msa1371110:CDS | 65.0% | |
| ! | GGAAGTGCGACGGGCCACGA+CGG | - | tig0019145:12157-12176 | None:intergenic | 70.0% |
| ! | GGGCTTCGCGGAAGTGCGAC+GGG | - | tig0019145:12166-12185 | None:intergenic | 70.0% |
| CCACGACGGTGGAGCTGCCG+TGG | - | tig0019145:12143-12162 | None:intergenic | 75.0% | |
| CCACGGCAGCTCCACCGTCG+TGG | + | tig0019145:12140-12159 | Msa1371110:five_prime_UTR | 75.0% | |
| AGTGCGACGGGCCACGACGG+TGG | - | tig0019145:12154-12173 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019145 | gene | 12055 | 16012 | 12055 | ID=Msa1371110;Name=Msa1371110 |
| tig0019145 | mRNA | 12055 | 16012 | 12055 | ID=Msa1371110-mRNA-1;Parent=Msa1371110;Name=Msa1371110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=214|1|1|1|1|1|10|198|438 |
| tig0019145 | exon | 12055 | 12478 | 12055 | ID=Msa1371110-mRNA-1:exon:2053;Parent=Msa1371110-mRNA-1 |
| tig0019145 | exon | 12566 | 12634 | 12566 | ID=Msa1371110-mRNA-1:exon:2054;Parent=Msa1371110-mRNA-1 |
| tig0019145 | exon | 12734 | 12829 | 12734 | ID=Msa1371110-mRNA-1:exon:2055;Parent=Msa1371110-mRNA-1 |
| tig0019145 | exon | 13137 | 13378 | 13137 | ID=Msa1371110-mRNA-1:exon:2056;Parent=Msa1371110-mRNA-1 |
| tig0019145 | exon | 13524 | 13662 | 13524 | ID=Msa1371110-mRNA-1:exon:2057;Parent=Msa1371110-mRNA-1 |
| tig0019145 | exon | 13809 | 13865 | 13809 | ID=Msa1371110-mRNA-1:exon:2058;Parent=Msa1371110-mRNA-1 |
| tig0019145 | exon | 14020 | 14154 | 14020 | ID=Msa1371110-mRNA-1:exon:2059;Parent=Msa1371110-mRNA-1 |
| tig0019145 | exon | 14825 | 15060 | 14825 | ID=Msa1371110-mRNA-1:exon:2060;Parent=Msa1371110-mRNA-1 |
| tig0019145 | exon | 15596 | 15640 | 15596 | ID=Msa1371110-mRNA-1:exon:2061;Parent=Msa1371110-mRNA-1 |
| tig0019145 | exon | 15727 | 16012 | 15727 | ID=Msa1371110-mRNA-1:exon:2062;Parent=Msa1371110-mRNA-1 |
| tig0019145 | five_prime_UTR | 12055 | 12268 | 12055 | ID=Msa1371110-mRNA-1:five_prime_utr;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 12269 | 12478 | 12269 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 12566 | 12634 | 12566 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 12734 | 12829 | 12734 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 13137 | 13378 | 13137 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 13524 | 13662 | 13524 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 13809 | 13865 | 13809 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 14020 | 14154 | 14020 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 14825 | 15060 | 14825 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 15596 | 15640 | 15596 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | CDS | 15727 | 15814 | 15727 | ID=Msa1371110-mRNA-1:cds;Parent=Msa1371110-mRNA-1 |
| tig0019145 | three_prime_UTR | 15815 | 16012 | 15815 | ID=Msa1371110-mRNA-1:three_prime_utr;Parent=Msa1371110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
