Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378650 | XP_003608867.1 | 92.937 | 269 | 16 | 1 | 1 | 269 | 1 | 266 | 6.71e-175 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378650 | G7JMK4 | 92.937 | 269 | 16 | 1 | 1 | 269 | 1 | 266 | 3.20e-175 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0284820 | Msa1378650 | 0.803439 | 3.484434e-49 | -8.615850e-47 |
| Msa0872440 | Msa1378650 | 0.816124 | 6.499014e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378650 | MtrunA17_Chr4g0057841 | 92.937 | 269 | 16 | 1 | 1 | 269 | 1 | 266 | 6.17e-179 | 493 |
| Msa1378650 | MtrunA17_Chr3g0116301 | 47.566 | 267 | 86 | 13 | 17 | 265 | 1 | 231 | 3.16e-56 | 180 |
| Msa1378650 | MtrunA17_Chr6g0459051 | 36.082 | 291 | 130 | 12 | 15 | 267 | 20 | 292 | 1.03e-36 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1378650 | AT3G48510.1 | 46.441 | 295 | 127 | 9 | 1 | 265 | 1 | 294 | 1.20e-69 | 217 |
| Msa1378650 | AT5G63350.1 | 45.426 | 317 | 106 | 11 | 1 | 265 | 1 | 302 | 2.51e-63 | 201 |
| Msa1378650 | AT5G50360.1 | 43.003 | 293 | 135 | 8 | 1 | 265 | 1 | 289 | 1.03e-58 | 189 |
| Msa1378650 | AT5G40800.1 | 38.043 | 276 | 129 | 10 | 14 | 267 | 17 | 272 | 1.02e-40 | 142 |
| Msa1378650 | AT3G27250.1 | 36.972 | 284 | 132 | 11 | 14 | 267 | 16 | 282 | 1.03e-39 | 139 |
| Msa1378650 | AT3G27250.2 | 36.972 | 284 | 132 | 11 | 14 | 267 | 16 | 282 | 1.03e-39 | 139 |
| Msa1378650 | AT5G40790.1 | 37.421 | 318 | 129 | 21 | 1 | 265 | 1 | 301 | 3.50e-32 | 120 |
Find 74 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTTCACGTGTAGGGTT+AGG | 0.295491 | tig0020091:-59607 | Msa1378650:CDS |
| CGTGGACAAACGGTGCTTAT+AGG | 0.312504 | tig0020091:-59691 | Msa1378650:CDS |
| GGGTTTATATCGGACGGTTA+TGG | 0.345110 | tig0020091:-59722 | Msa1378650:CDS |
| GTGGACAAACGGTGCTTATA+GGG | 0.359052 | tig0020091:-59690 | Msa1378650:CDS |
| TCGGAAGCAGTGGTGGTTCC+AGG | 0.368423 | tig0020091:+60154 | None:intergenic |
| GTTCCAGGAACTACAGGTTT+TGG | 0.376841 | tig0020091:+60169 | None:intergenic |
| CTGAGCGTGGACACGTGTCC+AGG | 0.384049 | tig0020091:-59743 | Msa1378650:CDS |
| GCGTTGGTGATGAAAATAAA+TGG | 0.399692 | tig0020091:-59644 | Msa1378650:CDS |
| GCACCAAAACCTGTAGTTCC+TGG | 0.400098 | tig0020091:-60172 | Msa1378650:CDS |
| GCTGCTCTTAGCTTGAGATT+AGG | 0.409253 | tig0020091:-59482 | Msa1378650:CDS |
| CGGTGCTTATAGGGAGATGA+TGG | 0.409317 | tig0020091:-59681 | Msa1378650:CDS |
| GGCAGTAAAGGAAGAGTTAC+CGG | 0.412328 | tig0020091:+59977 | None:intergenic |
| GTCGTTCACGTGTAGGGTTA+GGG | 0.440516 | tig0020091:-59606 | Msa1378650:CDS |
| TCCTTTACTGCCGGAAACTC+CGG | 0.444561 | tig0020091:-59966 | Msa1378650:CDS |
| TGTATCCGTCGTTCACGTGT+AGG | 0.446716 | tig0020091:-59613 | Msa1378650:CDS |
| AAAGTAGAAGCTGAACCTTA+TGG | 0.466213 | tig0020091:-59878 | Msa1378650:CDS |
| GGTTGTTGCATCGTTAGAAA+TGG | 0.478430 | tig0020091:-60247 | Msa1378650:CDS |
| GTATCCGTCGTTCACGTGTA+GGG | 0.479224 | tig0020091:-59612 | Msa1378650:CDS |
| AAGATCATTATGGATGGTAG+AGG | 0.485353 | tig0020091:-60271 | None:intergenic |
| GGCACCGGATGAACTTGTTC+CGG | 0.487946 | tig0020091:+59998 | None:intergenic |
| GTGGTGGTTCCAGGAACTAC+AGG | 0.492666 | tig0020091:+60163 | None:intergenic |
| GCCGGAGTTTCCGGCAGTAA+AGG | 0.499276 | tig0020091:+59965 | None:intergenic |
| TTGGTATAGCACGGTGGAGC+CGG | 0.504742 | tig0020091:-59855 | Msa1378650:CDS |
| TGGGTGGAGGGAGAAGGACT+AGG | 0.508812 | tig0020091:-59794 | Msa1378650:CDS |
| TTCACCGGAACAAGTTCATC+CGG | 0.512019 | tig0020091:-60002 | Msa1378650:CDS |
| AAAGGAAGAGTTACCGGCAC+CGG | 0.524694 | tig0020091:+59983 | None:intergenic |
| GGTAACTCTTCCTTTACTGC+CGG | 0.525629 | tig0020091:-59975 | Msa1378650:CDS |
| ACGGTTAACCGCACCGTCAC+CGG | 0.527230 | tig0020091:+59836 | None:intergenic |
| GTGTGGAGAATGGACTGTGG+TGG | 0.537151 | tig0020091:-59530 | Msa1378650:CDS |
| TGGACTGTGGTGGGTTTGCA+TGG | 0.544264 | tig0020091:-59520 | Msa1378650:CDS |
| GGAAGAGTGACGTGGACAAA+CGG | 0.551187 | tig0020091:-59701 | Msa1378650:CDS |
| TGTGGAGAATGGACTGTGGT+GGG | 0.552318 | tig0020091:-59529 | Msa1378650:CDS |
| GAGAGAAAGATCATTATGGA+TGG | 0.559862 | tig0020091:-60277 | None:intergenic |
| ACCTTGTGATGTGTGGAGAA+TGG | 0.563435 | tig0020091:-59540 | Msa1378650:CDS |
| CACGTGTCCAGGGTTTATAT+CGG | 0.563575 | tig0020091:-59732 | Msa1378650:CDS |
| GGGTGGAGGGAGAAGGACTA+GGG | 0.564010 | tig0020091:-59793 | Msa1378650:CDS |
| ACCGTGCTATACCAACCATA+AGG | 0.570916 | tig0020091:+59863 | None:intergenic |
| GACGCATGGGTGGAGGGAGA+AGG | 0.571304 | tig0020091:-59800 | Msa1378650:CDS |
| ATCATTATGGATGGTAGAGG+AGG | 0.584055 | tig0020091:-60268 | None:intergenic |
| TAACCGTCCGATATAAACCC+TGG | 0.584912 | tig0020091:+59725 | None:intergenic |
| TAGCACGGTGGAGCCGGTGA+CGG | 0.587904 | tig0020091:-59849 | Msa1378650:CDS |
| TATAGGGAGATGATGGGTGA+TGG | 0.589637 | tig0020091:-59674 | Msa1378650:CDS |
| GTCTGATGAAGAAGTACCAT+CGG | 0.593115 | tig0020091:+60135 | None:intergenic |
| TGTGACTGACGCATGGGTGG+AGG | 0.595200 | tig0020091:-59807 | Msa1378650:CDS |
| TGCGTCAGTCACATACTCTA+CGG | 0.595234 | tig0020091:+59817 | None:intergenic |
| TCCATTCTCCACACATCACA+AGG | 0.595386 | tig0020091:+59539 | None:intergenic |
| TTACGTTACCTTGTGATGTG+TGG | 0.599508 | tig0020091:-59547 | Msa1378650:CDS |
| TCGGATTCTTCGTTTATCAG+TGG | 0.599552 | tig0020091:+60042 | None:intergenic |
| GGAACAAGTTCATCCGGTGC+CGG | 0.600072 | tig0020091:-59996 | Msa1378650:CDS |
| TAGAGTATGTGACTGACGCA+TGG | 0.605305 | tig0020091:-59814 | Msa1378650:CDS |
| TGAGCGTGGACACGTGTCCA+GGG | 0.605930 | tig0020091:-59742 | Msa1378650:CDS |
| TAGAAGCTGAACCTTATGGT+TGG | 0.610063 | tig0020091:-59874 | Msa1378650:CDS |
| ACCTTATGGTTGGTATAGCA+CGG | 0.612818 | tig0020091:-59864 | Msa1378650:CDS |
| AGTACCATCGGAAGCAGTGG+TGG | 0.613233 | tig0020091:+60147 | None:intergenic |
| GGCAAAAGAGCAAAGCCTAA+CGG | 0.614102 | tig0020091:-59945 | Msa1378650:CDS |
| GGAACCACCACTGCTTCCGA+TGG | 0.618784 | tig0020091:-60151 | Msa1378650:CDS |
| AGAAGTACCATCGGAAGCAG+TGG | 0.636051 | tig0020091:+60144 | None:intergenic |
| GGTGATGAAAATAAATGGTG+TGG | 0.641717 | tig0020091:-59639 | Msa1378650:CDS |
| GGGTGATGGAGTTGTAGCGT+TGG | 0.642877 | tig0020091:-59660 | Msa1378650:CDS |
| AGAGTATGTGACTGACGCAT+GGG | 0.647584 | tig0020091:-59813 | Msa1378650:CDS |
| GGTGCTTATAGGGAGATGAT+GGG | 0.655686 | tig0020091:-59680 | Msa1378650:CDS |
| GTATGTGACTGACGCATGGG+TGG | 0.660130 | tig0020091:-59810 | Msa1378650:CDS |
| AAGAAAATAATACAAATCAG+TGG | 0.662764 | tig0020091:-59922 | Msa1378650:CDS |
| TGTCCAGGGTTTATATCGGA+CGG | 0.664184 | tig0020091:-59728 | Msa1378650:CDS |
| CTAACCCTACACGTGAACGA+CGG | 0.667492 | tig0020091:+59608 | None:intergenic |
| CGGTGGAGCCGGTGACGGTG+CGG | 0.668027 | tig0020091:-59844 | Msa1378650:CDS |
| GAGGACAGTGAATCTGAGCG+TGG | 0.673825 | tig0020091:-59756 | Msa1378650:CDS |
| TAGGGAATACAGATGAAGAG+AGG | 0.676172 | tig0020091:-59775 | Msa1378650:CDS |
| TGCACATGATATGTCTACCA+TGG | 0.683929 | tig0020091:-60224 | Msa1378650:CDS |
| GATGTGTGGAGAATGGACTG+TGG | 0.688057 | tig0020091:-59533 | Msa1378650:CDS |
| CTGATAAACGAAGAATCCGA+CGG | 0.703075 | tig0020091:-60039 | Msa1378650:CDS |
| ACGGTTATGGAAGAGTGACG+TGG | 0.711703 | tig0020091:-59709 | Msa1378650:CDS |
| GGTACTTCTTCATCAGACAG+CGG | 0.753530 | tig0020091:-60130 | Msa1378650:CDS |
| TTATGGTTGGTATAGCACGG+TGG | 0.827433 | tig0020091:-59861 | Msa1378650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAATAATACAAATCAG+TGG | - | tig0020091:59815-59834 | Msa1378650:CDS | 20.0% |
| !! | AAGAAAATAATACAAATCAG+TGG | - | tig0020091:59815-59834 | Msa1378650:CDS | 20.0% |
| !!! | TTTTTTAACGTACTTTCTTC+TGG | + | tig0020091:59659-59678 | None:intergenic | 25.0% |
| !! | TTGTATTATTTTCTTCCGTT+AGG | + | tig0020091:59810-59829 | None:intergenic | 25.0% |
| !!! | TTTTTTAACGTACTTTCTTC+TGG | + | tig0020091:59659-59678 | None:intergenic | 25.0% |
| !! | TTGTATTATTTTCTTCCGTT+AGG | + | tig0020091:59810-59829 | None:intergenic | 25.0% |
| !!! | CCTAAGCATTATTTTTTCCA+TGG | + | tig0020091:59533-59552 | None:intergenic | 30.0% |
| CCATGGAAAAAATAATGCTT+AGG | - | tig0020091:59530-59549 | Msa1378650:CDS | 30.0% | |
| !!! | CCTAAGCATTATTTTTTCCA+TGG | + | tig0020091:59533-59552 | None:intergenic | 30.0% |
| CCATGGAAAAAATAATGCTT+AGG | - | tig0020091:59530-59549 | Msa1378650:CDS | 30.0% | |
| AAAGTAGAAGCTGAACCTTA+TGG | - | tig0020091:59859-59878 | Msa1378650:CDS | 35.0% | |
| !! | GCGTTGGTGATGAAAATAAA+TGG | - | tig0020091:60093-60112 | Msa1378650:CDS | 35.0% |
| GGTGATGAAAATAAATGGTG+TGG | - | tig0020091:60098-60117 | Msa1378650:CDS | 35.0% | |
| AAAGTAGAAGCTGAACCTTA+TGG | - | tig0020091:59859-59878 | Msa1378650:CDS | 35.0% | |
| !! | GCGTTGGTGATGAAAATAAA+TGG | - | tig0020091:60093-60112 | Msa1378650:CDS | 35.0% |
| GGTGATGAAAATAAATGGTG+TGG | - | tig0020091:60098-60117 | Msa1378650:CDS | 35.0% | |
| GGTTGTTGCATCGTTAGAAA+TGG | - | tig0020091:59490-59509 | Msa1378650:CDS | 40.0% | |
| TGCACATGATATGTCTACCA+TGG | - | tig0020091:59513-59532 | Msa1378650:CDS | 40.0% | |
| !!! | ACTACAGGTTTTGGTGCTAT+AGG | + | tig0020091:59562-59581 | None:intergenic | 40.0% |
| !! | GTCTGATGAAGAAGTACCAT+CGG | + | tig0020091:59605-59624 | None:intergenic | 40.0% |
| TCGGATTCTTCGTTTATCAG+TGG | + | tig0020091:59698-59717 | None:intergenic | 40.0% | |
| CTGATAAACGAAGAATCCGA+CGG | - | tig0020091:59698-59717 | Msa1378650:CDS | 40.0% | |
| ! | AAGAGACGTTTTTCTTCCGT+CGG | + | tig0020091:59717-59736 | None:intergenic | 40.0% |
| GAAGAAAAACGTCTCTTCAC+CGG | - | tig0020091:59720-59739 | Msa1378650:CDS | 40.0% | |
| TAGAAGCTGAACCTTATGGT+TGG | - | tig0020091:59863-59882 | Msa1378650:CDS | 40.0% | |
| ! | ACCTTATGGTTGGTATAGCA+CGG | - | tig0020091:59873-59892 | Msa1378650:CDS | 40.0% |
| TAGGGAATACAGATGAAGAG+AGG | - | tig0020091:59962-59981 | Msa1378650:CDS | 40.0% | |
| TTACGTTACCTTGTGATGTG+TGG | - | tig0020091:60190-60209 | Msa1378650:CDS | 40.0% | |
| GGTTGTTGCATCGTTAGAAA+TGG | - | tig0020091:59490-59509 | Msa1378650:CDS | 40.0% | |
| TGCACATGATATGTCTACCA+TGG | - | tig0020091:59513-59532 | Msa1378650:CDS | 40.0% | |
| !!! | ACTACAGGTTTTGGTGCTAT+AGG | + | tig0020091:59562-59581 | None:intergenic | 40.0% |
| !! | GTCTGATGAAGAAGTACCAT+CGG | + | tig0020091:59605-59624 | None:intergenic | 40.0% |
| TCGGATTCTTCGTTTATCAG+TGG | + | tig0020091:59698-59717 | None:intergenic | 40.0% | |
| CTGATAAACGAAGAATCCGA+CGG | - | tig0020091:59698-59717 | Msa1378650:CDS | 40.0% | |
| ! | AAGAGACGTTTTTCTTCCGT+CGG | + | tig0020091:59717-59736 | None:intergenic | 40.0% |
| GAAGAAAAACGTCTCTTCAC+CGG | - | tig0020091:59720-59739 | Msa1378650:CDS | 40.0% | |
| TAGAAGCTGAACCTTATGGT+TGG | - | tig0020091:59863-59882 | Msa1378650:CDS | 40.0% | |
| ! | ACCTTATGGTTGGTATAGCA+CGG | - | tig0020091:59873-59892 | Msa1378650:CDS | 40.0% |
| TAGGGAATACAGATGAAGAG+AGG | - | tig0020091:59962-59981 | Msa1378650:CDS | 40.0% | |
| TTACGTTACCTTGTGATGTG+TGG | - | tig0020091:60190-60209 | Msa1378650:CDS | 40.0% | |
| ! | GTTCCAGGAACTACAGGTTT+TGG | + | tig0020091:59571-59590 | None:intergenic | 45.0% |
| GGTACTTCTTCATCAGACAG+CGG | - | tig0020091:59607-59626 | Msa1378650:CDS | 45.0% | |
| TTCACCGGAACAAGTTCATC+CGG | - | tig0020091:59735-59754 | Msa1378650:CDS | 45.0% | |
| GGCAGTAAAGGAAGAGTTAC+CGG | + | tig0020091:59763-59782 | None:intergenic | 45.0% | |
| GGTAACTCTTCCTTTACTGC+CGG | - | tig0020091:59762-59781 | Msa1378650:CDS | 45.0% | |
| ! | GTTAGGCTTTGCTCTTTTGC+CGG | + | tig0020091:59793-59812 | None:intergenic | 45.0% |
| GGCAAAAGAGCAAAGCCTAA+CGG | - | tig0020091:59792-59811 | Msa1378650:CDS | 45.0% | |
| ACCGTGCTATACCAACCATA+AGG | + | tig0020091:59877-59896 | None:intergenic | 45.0% | |
| ! | TTATGGTTGGTATAGCACGG+TGG | - | tig0020091:59876-59895 | Msa1378650:CDS | 45.0% |
| TGCGTCAGTCACATACTCTA+CGG | + | tig0020091:59923-59942 | None:intergenic | 45.0% | |
| TAGAGTATGTGACTGACGCA+TGG | - | tig0020091:59923-59942 | Msa1378650:CDS | 45.0% | |
| AGAGTATGTGACTGACGCAT+GGG | - | tig0020091:59924-59943 | Msa1378650:CDS | 45.0% | |
| CACGTGTCCAGGGTTTATAT+CGG | - | tig0020091:60005-60024 | Msa1378650:CDS | 45.0% | |
| TGTCCAGGGTTTATATCGGA+CGG | - | tig0020091:60009-60028 | Msa1378650:CDS | 45.0% | |
| TAACCGTCCGATATAAACCC+TGG | + | tig0020091:60015-60034 | None:intergenic | 45.0% | |
| GGGTTTATATCGGACGGTTA+TGG | - | tig0020091:60015-60034 | Msa1378650:CDS | 45.0% | |
| GTGGACAAACGGTGCTTATA+GGG | - | tig0020091:60047-60066 | Msa1378650:CDS | 45.0% | |
| GGTGCTTATAGGGAGATGAT+GGG | - | tig0020091:60057-60076 | Msa1378650:CDS | 45.0% | |
| !! | TATAGGGAGATGATGGGTGA+TGG | - | tig0020091:60063-60082 | Msa1378650:CDS | 45.0% |
| ACCTTGTGATGTGTGGAGAA+TGG | - | tig0020091:60197-60216 | Msa1378650:CDS | 45.0% | |
| TCCATTCTCCACACATCACA+AGG | + | tig0020091:60201-60220 | None:intergenic | 45.0% | |
| ! | GCTGCTCTTAGCTTGAGATT+AGG | - | tig0020091:60255-60274 | Msa1378650:CDS | 45.0% |
| ! | GTTCCAGGAACTACAGGTTT+TGG | + | tig0020091:59571-59590 | None:intergenic | 45.0% |
| GGTACTTCTTCATCAGACAG+CGG | - | tig0020091:59607-59626 | Msa1378650:CDS | 45.0% | |
| TTCACCGGAACAAGTTCATC+CGG | - | tig0020091:59735-59754 | Msa1378650:CDS | 45.0% | |
| GGCAGTAAAGGAAGAGTTAC+CGG | + | tig0020091:59763-59782 | None:intergenic | 45.0% | |
| GGTAACTCTTCCTTTACTGC+CGG | - | tig0020091:59762-59781 | Msa1378650:CDS | 45.0% | |
| ! | GTTAGGCTTTGCTCTTTTGC+CGG | + | tig0020091:59793-59812 | None:intergenic | 45.0% |
| GGCAAAAGAGCAAAGCCTAA+CGG | - | tig0020091:59792-59811 | Msa1378650:CDS | 45.0% | |
| ACCGTGCTATACCAACCATA+AGG | + | tig0020091:59877-59896 | None:intergenic | 45.0% | |
| ! | TTATGGTTGGTATAGCACGG+TGG | - | tig0020091:59876-59895 | Msa1378650:CDS | 45.0% |
| TGCGTCAGTCACATACTCTA+CGG | + | tig0020091:59923-59942 | None:intergenic | 45.0% | |
| TAGAGTATGTGACTGACGCA+TGG | - | tig0020091:59923-59942 | Msa1378650:CDS | 45.0% | |
| AGAGTATGTGACTGACGCAT+GGG | - | tig0020091:59924-59943 | Msa1378650:CDS | 45.0% | |
| CACGTGTCCAGGGTTTATAT+CGG | - | tig0020091:60005-60024 | Msa1378650:CDS | 45.0% | |
| TGTCCAGGGTTTATATCGGA+CGG | - | tig0020091:60009-60028 | Msa1378650:CDS | 45.0% | |
| TAACCGTCCGATATAAACCC+TGG | + | tig0020091:60015-60034 | None:intergenic | 45.0% | |
| GGGTTTATATCGGACGGTTA+TGG | - | tig0020091:60015-60034 | Msa1378650:CDS | 45.0% | |
| GTGGACAAACGGTGCTTATA+GGG | - | tig0020091:60047-60066 | Msa1378650:CDS | 45.0% | |
| GGTGCTTATAGGGAGATGAT+GGG | - | tig0020091:60057-60076 | Msa1378650:CDS | 45.0% | |
| !! | TATAGGGAGATGATGGGTGA+TGG | - | tig0020091:60063-60082 | Msa1378650:CDS | 45.0% |
| ACCTTGTGATGTGTGGAGAA+TGG | - | tig0020091:60197-60216 | Msa1378650:CDS | 45.0% | |
| TCCATTCTCCACACATCACA+AGG | + | tig0020091:60201-60220 | None:intergenic | 45.0% | |
| ! | GCTGCTCTTAGCTTGAGATT+AGG | - | tig0020091:60255-60274 | Msa1378650:CDS | 45.0% |
| GCACCAAAACCTGTAGTTCC+TGG | - | tig0020091:59565-59584 | Msa1378650:CDS | 50.0% | |
| !! | AGAAGTACCATCGGAAGCAG+TGG | + | tig0020091:59596-59615 | None:intergenic | 50.0% |
| AAAGGAAGAGTTACCGGCAC+CGG | + | tig0020091:59757-59776 | None:intergenic | 50.0% | |
| TCCTTTACTGCCGGAAACTC+CGG | - | tig0020091:59771-59790 | Msa1378650:CDS | 50.0% | |
| ! | TGCTCTTTTGCCGGAGTTTC+CGG | + | tig0020091:59784-59803 | None:intergenic | 50.0% |
| ACGGTTATGGAAGAGTGACG+TGG | - | tig0020091:60028-60047 | Msa1378650:CDS | 50.0% | |
| GGAAGAGTGACGTGGACAAA+CGG | - | tig0020091:60036-60055 | Msa1378650:CDS | 50.0% | |
| CGTGGACAAACGGTGCTTAT+AGG | - | tig0020091:60046-60065 | Msa1378650:CDS | 50.0% | |
| CGGTGCTTATAGGGAGATGA+TGG | - | tig0020091:60056-60075 | Msa1378650:CDS | 50.0% | |
| TGTATCCGTCGTTCACGTGT+AGG | - | tig0020091:60124-60143 | Msa1378650:CDS | 50.0% | |
| GTATCCGTCGTTCACGTGTA+GGG | - | tig0020091:60125-60144 | Msa1378650:CDS | 50.0% | |
| CTAACCCTACACGTGAACGA+CGG | + | tig0020091:60132-60151 | None:intergenic | 50.0% | |
| GTCGTTCACGTGTAGGGTTA+GGG | - | tig0020091:60131-60150 | Msa1378650:CDS | 50.0% | |
| ! | AGGGTTGTGCAGTTTTCGTG+TGG | - | tig0020091:60150-60169 | Msa1378650:CDS | 50.0% |
| ! | GGGTTGTGCAGTTTTCGTGT+GGG | - | tig0020091:60151-60170 | Msa1378650:CDS | 50.0% |
| ! | TTGTGCAGTTTTCGTGTGGG+AGG | - | tig0020091:60154-60173 | Msa1378650:CDS | 50.0% |
| ! | TGTGCAGTTTTCGTGTGGGA+GGG | - | tig0020091:60155-60174 | Msa1378650:CDS | 50.0% |
| !! | GATGTGTGGAGAATGGACTG+TGG | - | tig0020091:60204-60223 | Msa1378650:CDS | 50.0% |
| !! | TGTGGAGAATGGACTGTGGT+GGG | - | tig0020091:60208-60227 | Msa1378650:CDS | 50.0% |
| GCACCAAAACCTGTAGTTCC+TGG | - | tig0020091:59565-59584 | Msa1378650:CDS | 50.0% | |
| !! | AGAAGTACCATCGGAAGCAG+TGG | + | tig0020091:59596-59615 | None:intergenic | 50.0% |
| AAAGGAAGAGTTACCGGCAC+CGG | + | tig0020091:59757-59776 | None:intergenic | 50.0% | |
| TCCTTTACTGCCGGAAACTC+CGG | - | tig0020091:59771-59790 | Msa1378650:CDS | 50.0% | |
| ! | TGCTCTTTTGCCGGAGTTTC+CGG | + | tig0020091:59784-59803 | None:intergenic | 50.0% |
| ACGGTTATGGAAGAGTGACG+TGG | - | tig0020091:60028-60047 | Msa1378650:CDS | 50.0% | |
| GGAAGAGTGACGTGGACAAA+CGG | - | tig0020091:60036-60055 | Msa1378650:CDS | 50.0% | |
| CGTGGACAAACGGTGCTTAT+AGG | - | tig0020091:60046-60065 | Msa1378650:CDS | 50.0% | |
| CGGTGCTTATAGGGAGATGA+TGG | - | tig0020091:60056-60075 | Msa1378650:CDS | 50.0% | |
| TGTATCCGTCGTTCACGTGT+AGG | - | tig0020091:60124-60143 | Msa1378650:CDS | 50.0% | |
| GTATCCGTCGTTCACGTGTA+GGG | - | tig0020091:60125-60144 | Msa1378650:CDS | 50.0% | |
| CTAACCCTACACGTGAACGA+CGG | + | tig0020091:60132-60151 | None:intergenic | 50.0% | |
| GTCGTTCACGTGTAGGGTTA+GGG | - | tig0020091:60131-60150 | Msa1378650:CDS | 50.0% | |
| ! | AGGGTTGTGCAGTTTTCGTG+TGG | - | tig0020091:60150-60169 | Msa1378650:CDS | 50.0% |
| ! | GGGTTGTGCAGTTTTCGTGT+GGG | - | tig0020091:60151-60170 | Msa1378650:CDS | 50.0% |
| ! | TTGTGCAGTTTTCGTGTGGG+AGG | - | tig0020091:60154-60173 | Msa1378650:CDS | 50.0% |
| ! | TGTGCAGTTTTCGTGTGGGA+GGG | - | tig0020091:60155-60174 | Msa1378650:CDS | 50.0% |
| !! | GATGTGTGGAGAATGGACTG+TGG | - | tig0020091:60204-60223 | Msa1378650:CDS | 50.0% |
| !! | TGTGGAGAATGGACTGTGGT+GGG | - | tig0020091:60208-60227 | Msa1378650:CDS | 50.0% |
| GTGGTGGTTCCAGGAACTAC+AGG | + | tig0020091:59577-59596 | None:intergenic | 55.0% | |
| AGTACCATCGGAAGCAGTGG+TGG | + | tig0020091:59593-59612 | None:intergenic | 55.0% | |
| ! | GGCACCGGATGAACTTGTTC+CGG | + | tig0020091:59742-59761 | None:intergenic | 55.0% |
| GGAACAAGTTCATCCGGTGC+CGG | - | tig0020091:59741-59760 | Msa1378650:CDS | 55.0% | |
| TTGGTATAGCACGGTGGAGC+CGG | - | tig0020091:59882-59901 | Msa1378650:CDS | 55.0% | |
| GTATGTGACTGACGCATGGG+TGG | - | tig0020091:59927-59946 | Msa1378650:CDS | 55.0% | |
| GAGGACAGTGAATCTGAGCG+TGG | - | tig0020091:59981-60000 | Msa1378650:CDS | 55.0% | |
| !! | GGGTGATGGAGTTGTAGCGT+TGG | - | tig0020091:60077-60096 | Msa1378650:CDS | 55.0% |
| CGTCGTTCACGTGTAGGGTT+AGG | - | tig0020091:60130-60149 | Msa1378650:CDS | 55.0% | |
| !! | GTGTGGAGAATGGACTGTGG+TGG | - | tig0020091:60207-60226 | Msa1378650:CDS | 55.0% |
| !! | TGGACTGTGGTGGGTTTGCA+TGG | - | tig0020091:60217-60236 | Msa1378650:CDS | 55.0% |
| GTGGTGGTTCCAGGAACTAC+AGG | + | tig0020091:59577-59596 | None:intergenic | 55.0% | |
| AGTACCATCGGAAGCAGTGG+TGG | + | tig0020091:59593-59612 | None:intergenic | 55.0% | |
| ! | GGCACCGGATGAACTTGTTC+CGG | + | tig0020091:59742-59761 | None:intergenic | 55.0% |
| GGAACAAGTTCATCCGGTGC+CGG | - | tig0020091:59741-59760 | Msa1378650:CDS | 55.0% | |
| TTGGTATAGCACGGTGGAGC+CGG | - | tig0020091:59882-59901 | Msa1378650:CDS | 55.0% | |
| GTATGTGACTGACGCATGGG+TGG | - | tig0020091:59927-59946 | Msa1378650:CDS | 55.0% | |
| GAGGACAGTGAATCTGAGCG+TGG | - | tig0020091:59981-60000 | Msa1378650:CDS | 55.0% | |
| !! | GGGTGATGGAGTTGTAGCGT+TGG | - | tig0020091:60077-60096 | Msa1378650:CDS | 55.0% |
| CGTCGTTCACGTGTAGGGTT+AGG | - | tig0020091:60130-60149 | Msa1378650:CDS | 55.0% | |
| !! | GTGTGGAGAATGGACTGTGG+TGG | - | tig0020091:60207-60226 | Msa1378650:CDS | 55.0% |
| !! | TGGACTGTGGTGGGTTTGCA+TGG | - | tig0020091:60217-60236 | Msa1378650:CDS | 55.0% |
| TCGGAAGCAGTGGTGGTTCC+AGG | + | tig0020091:59586-59605 | None:intergenic | 60.0% | |
| GGAACCACCACTGCTTCCGA+TGG | - | tig0020091:59586-59605 | Msa1378650:CDS | 60.0% | |
| GCCGGAGTTTCCGGCAGTAA+AGG | + | tig0020091:59775-59794 | None:intergenic | 60.0% | |
| ACGGTTAACCGCACCGTCAC+CGG | + | tig0020091:59904-59923 | None:intergenic | 60.0% | |
| TGTGACTGACGCATGGGTGG+AGG | - | tig0020091:59930-59949 | Msa1378650:CDS | 60.0% | |
| GTGACTGACGCATGGGTGGA+GGG | - | tig0020091:59931-59950 | Msa1378650:CDS | 60.0% | |
| TGGGTGGAGGGAGAAGGACT+AGG | - | tig0020091:59943-59962 | Msa1378650:CDS | 60.0% | |
| GGGTGGAGGGAGAAGGACTA+GGG | - | tig0020091:59944-59963 | Msa1378650:CDS | 60.0% | |
| TGAGCGTGGACACGTGTCCA+GGG | - | tig0020091:59995-60014 | Msa1378650:CDS | 60.0% | |
| TCGGAAGCAGTGGTGGTTCC+AGG | + | tig0020091:59586-59605 | None:intergenic | 60.0% | |
| GGAACCACCACTGCTTCCGA+TGG | - | tig0020091:59586-59605 | Msa1378650:CDS | 60.0% | |
| GCCGGAGTTTCCGGCAGTAA+AGG | + | tig0020091:59775-59794 | None:intergenic | 60.0% | |
| ACGGTTAACCGCACCGTCAC+CGG | + | tig0020091:59904-59923 | None:intergenic | 60.0% | |
| TGTGACTGACGCATGGGTGG+AGG | - | tig0020091:59930-59949 | Msa1378650:CDS | 60.0% | |
| GTGACTGACGCATGGGTGGA+GGG | - | tig0020091:59931-59950 | Msa1378650:CDS | 60.0% | |
| TGGGTGGAGGGAGAAGGACT+AGG | - | tig0020091:59943-59962 | Msa1378650:CDS | 60.0% | |
| GGGTGGAGGGAGAAGGACTA+GGG | - | tig0020091:59944-59963 | Msa1378650:CDS | 60.0% | |
| TGAGCGTGGACACGTGTCCA+GGG | - | tig0020091:59995-60014 | Msa1378650:CDS | 60.0% | |
| TAGCACGGTGGAGCCGGTGA+CGG | - | tig0020091:59888-59907 | Msa1378650:CDS | 65.0% | |
| GACGCATGGGTGGAGGGAGA+AGG | - | tig0020091:59937-59956 | Msa1378650:CDS | 65.0% | |
| CTGAGCGTGGACACGTGTCC+AGG | - | tig0020091:59994-60013 | Msa1378650:CDS | 65.0% | |
| TAGCACGGTGGAGCCGGTGA+CGG | - | tig0020091:59888-59907 | Msa1378650:CDS | 65.0% | |
| GACGCATGGGTGGAGGGAGA+AGG | - | tig0020091:59937-59956 | Msa1378650:CDS | 65.0% | |
| CTGAGCGTGGACACGTGTCC+AGG | - | tig0020091:59994-60013 | Msa1378650:CDS | 65.0% | |
| ! | CGGTGGAGCCGGTGACGGTG+CGG | - | tig0020091:59893-59912 | Msa1378650:CDS | 75.0% |
| ! | CGGTGGAGCCGGTGACGGTG+CGG | - | tig0020091:59893-59912 | Msa1378650:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020091 | gene | 59475 | 60284 | 59475 | ID=Msa1378650;Name=Msa1378650 |
| tig0020091 | mRNA | 59475 | 60284 | 59475 | ID=Msa1378650-mRNA-1;Parent=Msa1378650;Name=Msa1378650-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|269 |
| tig0020091 | exon | 59475 | 60284 | 59475 | ID=Msa1378650-mRNA-1:exon:6131;Parent=Msa1378650-mRNA-1 |
| tig0020091 | CDS | 59475 | 60284 | 59475 | ID=Msa1378650-mRNA-1:cds;Parent=Msa1378650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
